InstallationHow to get the code please see: Download
To setup rDiff, please follow these steps:
Download the SAMTools (version 0.1.7) from http://samtools.sourceforge.net/ and install it. You need to add the flag -fPIC in the SAMTools Makefile for compilation.
Change to directory that contains rDiff and configure rDiff by typing:
this detects and stores paths of dependencies necessary to compile and run rDiff. You can also set these variables manually using the interactive configuration:
- To compile rDiff, type:
When successfully completed, rDiff is usable. Check out the <Examples>:
This will download an example dataset and run the rDiff.parametric on it. You can also run rDiff.parametric, rDiff.nonparametric or rDiff.poisson by typing: