rDiff: Accurate detection of differential RNA processing

How to get the code please see: Download

To setup rDiff, please follow these steps:

Download the SAMTools (version 0.1.7) from http://samtools.sourceforge.net/ and install it. You need to add the flag -fPIC in the SAMTools Makefile for compilation.
Change to directory that contains rDiff and configure rDiff by typing:
```
./configure 
```
this detects and stores paths of dependencies necessary to compile and run rDiff. You can also set these variables manually using the interactive configuration:
```
./configure -i 
```
To compile rDiff, type:
```
make
```
When successfully completed, rDiff is usable. Check out the <Examples>:
```
make example
```
This will download an example dataset and run the rDiff.parametric on it. You can also run rDiff.parametric, rDiff.nonparametric or rDiff.poisson by typing:
```
make more_examples
```

Documentation