Publications

Publications describing rDiff

• Accurate Detection of Differential RNA Processing, Drewe P, Stegle O, Hartmann L, Kahles A, Bohnert R, Wachter A, Borgward K, Rätsch G, Nucl. Acids Res. (2013) 41 (10): 5189-5198, online access

  • Supplemental data

    Dataset 1 (small biological variance)	Dataset 2 (large biological variance)
    Bam Files: condition_A_replicate_1.bam condition_A_replicate_2.bam condition_B_replicate_1.bam condition_B_replicate_2.bam	Bam Files: condition_A_replicate_1_large_var.bam condition_A_replicate_2_large_var.bam condition_B_replicate_1_large_var.bam condition_B_replicate_2_large_var.bam
    Genome annotation with label: genes_label.mat	Genome annotation with label: genes_label_large_var.mat

• Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts, Stegle O, Drewe P, Bohnert R,Borgwardt K , Rätsch G, Nature Precedings, 2012 online access

rDiff use cases

• Polypyrimidine tract binding protein homologs from Arabidopsis are key regulators of alternative splicing with implications in fundamental developmental processes, Rühl C, Stauffer E, Kahles A, Wagner G, Drechsel G, Rätsch G, Wachter A, Plant Cell, 2012 Nov;24(11):4360-75 online access