QPalma paper data
-----------------

The file allReads.full contains the 2.98 x 10^6 reads used for the evaluation
of QPalma described in the paper "QPalma - Optimal Spliced Alignments of Short
Sequence Reads"

Data Format
-----------

The format of the data is as follows:

- column  1: unique read id 
- column  2: chromosome id
- column  3: strand info  D/P i.e. +/-
- column  4: sequence of the read
- column  5: internal vmatch info
- column  6: internal vmatch info
- column  7: probabilities (quality values, used by QPalma)
- column  8: calibrated probabilities (alternative quality values)
- column  9: chastity (another alternative quality values)
- column 10: Gene id
- column 11: start in the first exon
- column 12: stop in the first exon
- column 13: start in the second exon
- column 14: stop in the second exon
- column 15: overlap


The spliced reads are those with an id less than 1000000300000. Also the will
have column 13 and 15 set to -1.