FML Splice Site Prediction FTP Server README (March 17, 2010) Currently the FTP server at ftp://ftp.tuebingen.mpg.de/fml/raetsch-lab/predictions/ contains the following organisms Splice Site Prediction files for download: 1) A_lyrata (FilteredModels6) 2) A_thaliana (TAIR9) 3) C_briggsae (WS210) 4) C_elegans (WS200) 5) C_remanei (WS210) 6) D_melanogaster (r5-19) 7) D_rerio () 8) H_sapiens (hg19) 9) M_musculus (M37) 10) P_pacificus (WS210) 11) Z_mays (B73_AGPv1) CONTENTS ******** Organism -------- Genus{1}_species/ Genus{1}_species_SpliceSitePred_{version}.tar.bz2 This directory contains a bzip2 compressed archive containing three subdirectories called genome, don_pred.bspf and acc_pred.bspf e.g. A_thaliana_SpliceSitePred_TAIR9.tar.bz2 Genome Sequence --------------- genome/ Genus{1}_species_{version}_genome.fasta.bz2 The genome directory contains a bzip2 compressed archive of genome sequences in FASTA format of the selected organism. e.g. A_thaliana_TAIR9_genome.fasta.bz2 Donor Splice Site Prediction ---------------------------- don_pred.bspf/ contig_{contig number}{+/-}.Conf_cum contig_{contig number}{+/-}.pos e.g. contig_1-.Conf_cum, contig_1-.pos Acceptor Splice Site Prediction ------------------------------- acc_pred.bspf/ contig_{contig number}{+/-}.Conf_cum contig_{contig number}{+/-}.pos e.g. contig_1-.Conf_cum, contig_1-.pos