chr13	juncbase	jcn_only_AD	101133374	101132617	.	-	.	gene_id "jcn_only_AD.1"; transcript_id "jcn_only_AD.1"; gene_name "CUFF.1570"; flanks "101133374-,101132617^"; structure "1^,2^"; splice_chain "101133374^,101133234^";
chr13	juncbase	jcn_only_AD	24463271	24460645	.	-	.	gene_id "jcn_only_AD.2"; transcript_id "jcn_only_AD.2"; gene_name "CUFF.1571"; flanks "24463271-,24460645^"; structure "1^,2^"; splice_chain "24463271^,24462817^";
chr13	juncbase	jcn_only_AD	21205241	21228015	.	+	.	gene_id "jcn_only_AD.3"; transcript_id "jcn_only_AD.3"; gene_name "CUFF.1548"; flanks "21205241-,21228015^"; structure "1^,2^"; splice_chain "21205241^,21219097^";
chr13	juncbase	jcn_only_AA	21205241	21228015	.	+	.	gene_id "jcn_only_AA.1"; transcript_id "jcn_only_AA.1"; gene_name "CUFF.1548,CUFF.1562"; flanks "21205241-,21228015^"; structure "1-,2-"; splice_chain "21212471-,21228015-";
chr13	juncbase	intron_retention	103518261	103518612	.	+	.	gene_id "intron_retention.1"; transcript_id "intron_retention.1"; gene_name "CUFF.1573"; flanks "103518261-,103518612^"; structure "0,1^2-"; splice_chain ",103518261^103518612-";
chr13	juncbase	jcn_only_AA	97640029	97642012	.	-	.	gene_id "jcn_only_AA.2"; transcript_id "jcn_only_AA.2"; gene_name "CUFF.1570"; flanks "97640029-,97642012^"; structure "1-,2-"; splice_chain "97640087-,97640029-";
chr13	juncbase	cassette	21230569	21237637	.	+	.	gene_id "cassette.1"; transcript_id "cassette.1"; gene_name "CUFF.1548"; flanks "21230569-,21237637^"; structure "0,1-2^"; splice_chain ",21237402-21237525^";
chr13	juncbase	alternative_donor	33629452	33634816	.	+	.	gene_id "alternative_donor.1"; transcript_id "alternative_donor.1"; gene_name "CUFF.1558"; flanks "33629452-,33634816^"; structure "1^,2^"; splice_chain "33629452^,33629502^";
chr13	juncbase	alternative_donor	103525693	103527657	.	+	.	gene_id "alternative_donor.2"; transcript_id "alternative_donor.2"; gene_name "CUFF.1573"; flanks "103525693-,103527657^"; structure "1^,2^"; splice_chain "103525693^,103527208^";
chr13	juncbase	alternative_acceptor	21179244	21189932	.	+	.	gene_id "alternative_acceptor.1"; transcript_id "alternative_acceptor.1"; gene_name "CUFF.1548"; flanks "21179244-,21189932^"; structure "1-,2-"; splice_chain "21188496-,21189932-";
chr13	juncbase	jcn_only_AD	78493532	78492759	.	-	.	gene_id "jcn_only_AD.4"; transcript_id "jcn_only_AD.4"; gene_name "CUFF.1568,CUFF.1570"; flanks "78493532-,78492759^"; structure "1^,2^"; splice_chain "78493532^,78493142^";
chr13	juncbase	alternative_donor	33590451	33627904	.	+	.	gene_id "alternative_donor.3"; transcript_id "alternative_donor.3"; gene_name "CUFF.1558"; flanks "33590451-,33627904^"; structure "1^,2^"; splice_chain "33590451^,33591397^";
chr13	juncbase	alternative_acceptor	97640029	97642012	.	-	.	gene_id "alternative_acceptor.2"; transcript_id "alternative_acceptor.2"; gene_name "CUFF.1570"; flanks "97640029-,97642012^"; structure "1-,2-"; splice_chain "97640087-,97640029-";
chr13	juncbase	jcn_only_AD	103525693	103527657	.	+	.	gene_id "jcn_only_AD.5"; transcript_id "jcn_only_AD.5"; gene_name "CUFF.1573"; flanks "103525693-,103527657^"; structure "1^,2^"; splice_chain "103525693^,103527208^";
chr13	juncbase	alternative_donor	78493532	78492759	.	-	.	gene_id "alternative_donor.4"; transcript_id "alternative_donor.4"; gene_name "CUFF.1568,CUFF.1570"; flanks "78493532-,78492759^"; structure "1^,2^"; splice_chain "78493532^,78493142^";
chr13	juncbase	jcn_only_AA	21179244	21189932	.	+	.	gene_id "jcn_only_AA.3"; transcript_id "jcn_only_AA.3"; gene_name "CUFF.1548"; flanks "21179244-,21189932^"; structure "1-,2-"; splice_chain "21188496-,21189932-";
chr13	juncbase	jcn_only_AD	24380089	24334356	.	-	.	gene_id "jcn_only_AD.6"; transcript_id "jcn_only_AD.6"; gene_name ""; flanks "24380089-,24334356^"; structure "1^,2^"; splice_chain "24380089^,24334672^";
chr13	juncbase	alternative_donor	97644762	97642063	.	-	.	gene_id "alternative_donor.5"; transcript_id "alternative_donor.5"; gene_name "CUFF.1570"; flanks "97644762-,97642063^"; structure "1^,2^"; splice_chain "97644762^,97644676^";
chr13	juncbase	alternative_acceptor	52028465	52034808	.	+	.	gene_id "alternative_acceptor.3"; transcript_id "alternative_acceptor.3"; gene_name ""; flanks "52028465-,52034808^"; structure "1-,2-"; splice_chain "52034621-,52034808-";
chr13	juncbase	jcn_only_AA	25525626	25542344	.	-	.	gene_id "jcn_only_AA.4"; transcript_id "jcn_only_AA.4"; gene_name "CUFF.1556"; flanks "25525626-,25542344^"; structure "1-,2-"; splice_chain "25541591-,25525626-";
chr13	juncbase	jcn_only_AA	25507674	25525535	.	-	.	gene_id "jcn_only_AA.5"; transcript_id "jcn_only_AA.5"; gene_name "CUFF.1556"; flanks "25507674-,25525535^"; structure "1-,2-"; splice_chain "25517159-,25507674-";
chr13	juncbase	intron_retention	21141924	21142024	.	+	.	gene_id "intron_retention.2"; transcript_id "intron_retention.2"; gene_name "CUFF.1548"; flanks "21141924-,21142024^"; structure "0,1^2-"; splice_chain ",21141924^21142024-";
chr13	juncbase	alternative_donor	21179244	21189932	.	+	.	gene_id "alternative_donor.6"; transcript_id "alternative_donor.6"; gene_name "CUFF.1548"; flanks "21179244-,21189932^"; structure "1^,2^"; splice_chain "21179244^,21188574^";
chr13	juncbase	alternative_donor	24380089	24334356	.	-	.	gene_id "alternative_donor.7"; transcript_id "alternative_donor.7"; gene_name ""; flanks "24380089-,24334356^"; structure "1^,2^"; splice_chain "24380089^,24334672^";
chr13	juncbase	jcn_only_AD	33629452	33634816	.	+	.	gene_id "jcn_only_AD.7"; transcript_id "jcn_only_AD.7"; gene_name "CUFF.1558"; flanks "33629452-,33634816^"; structure "1^,2^"; splice_chain "33629452^,33629502^";
chr13	juncbase	jcn_only_AA	25525626	25541530	.	-	.	gene_id "jcn_only_AA.6"; transcript_id "jcn_only_AA.6"; gene_name "CUFF.1556"; flanks "25525626-,25541530^"; structure "1-,2-"; splice_chain "25539718-,25525626-";
chr13	juncbase	intron_retention	21237525	21237637	.	+	.	gene_id "intron_retention.3"; transcript_id "intron_retention.3"; gene_name "CUFF.1548"; flanks "21237525-,21237637^"; structure "0,1^2-"; splice_chain ",21237525^21237637-";
chr13	juncbase	alternative_acceptor	24415627	24432999	.	-	.	gene_id "alternative_acceptor.4"; transcript_id "alternative_acceptor.4"; gene_name "CUFF.1554"; flanks "24415627-,24432999^"; structure "1-,2-"; splice_chain "24416708-,24415627-";
chr13	juncbase	jcn_only_AA	78470693	78473994	.	-	.	gene_id "jcn_only_AA.7"; transcript_id "jcn_only_AA.7"; gene_name "CUFF.1568"; flanks "78470693-,78473994^"; structure "1-,2-"; splice_chain "78472469-,78470693-";
chr13	juncbase	jcn_only_AD	33590451	33627904	.	+	.	gene_id "jcn_only_AD.8"; transcript_id "jcn_only_AD.8"; gene_name "CUFF.1558"; flanks "33590451-,33627904^"; structure "1^,2^"; splice_chain "33590451^,33591397^";
chr13	juncbase	jcn_only_AD	21179244	21189932	.	+	.	gene_id "jcn_only_AD.9"; transcript_id "jcn_only_AD.9"; gene_name "CUFF.1548"; flanks "21179244-,21189932^"; structure "1^,2^"; splice_chain "21179244^,21188574^";
chr13	juncbase	jcn_only_AA	24415627	24432999	.	-	.	gene_id "jcn_only_AA.8"; transcript_id "jcn_only_AA.8"; gene_name "CUFF.1554"; flanks "24415627-,24432999^"; structure "1-,2-"; splice_chain "24416708-,24415627-";
chr13	juncbase	jcn_only_AD	97644762	97642063	.	-	.	gene_id "jcn_only_AD.10"; transcript_id "jcn_only_AD.10"; gene_name "CUFF.1570"; flanks "97644762-,97642063^"; structure "1^,2^"; splice_chain "97644762^,97644676^";
chr13	juncbase	alternative_donor	101133374	101132617	.	-	.	gene_id "alternative_donor.8"; transcript_id "alternative_donor.8"; gene_name "CUFF.1570"; flanks "101133374-,101132617^"; structure "1^,2^"; splice_chain "101133374^,101133234^";
chr13	juncbase	cassette	31192193	31195901	.	+	.	gene_id "cassette.2"; transcript_id "cassette.2"; gene_name "CUFF.1557"; flanks "31192193-,31195901^"; structure "0,1-2^"; splice_chain ",31195210-31195376^";
chr13	juncbase	jcn_only_AA	51796705	51805484	.	+	.	gene_id "jcn_only_AA.9"; transcript_id "jcn_only_AA.9"; gene_name "CUFF.1562"; flanks "51796705-,51805484^"; structure "1-,2-"; splice_chain "51799257-,51805484-";
chr13	juncbase	alternative_acceptor	78470693	78473994	.	-	.	gene_id "alternative_acceptor.5"; transcript_id "alternative_acceptor.5"; gene_name "CUFF.1568"; flanks "78470693-,78473994^"; structure "1-,2-"; splice_chain "78472469-,78470693-";
chr13	juncbase	cassette	21157158	21165106	.	+	.	gene_id "cassette.3"; transcript_id "cassette.3"; gene_name "CUFF.1548"; flanks "21157158-,21165106^"; structure "0,1-2^"; splice_chain ",21163950-21164006^";
chr13	juncbase	alternative_donor	24463271	24460645	.	-	.	gene_id "alternative_donor.9"; transcript_id "alternative_donor.9"; gene_name "CUFF.1571"; flanks "24463271-,24460645^"; structure "1^,2^"; splice_chain "24463271^,24462817^";
chr13	juncbase	intron_retention	78493532	78492759	.	-	.	gene_id "intron_retention.4"; transcript_id "intron_retention.4"; gene_name "CUFF.1568"; flanks "78493532-,78492759^"; structure "0,1^2-"; splice_chain ",78493532^78492759-";
chr13	juncbase	jcn_only_AA	52028465	52034808	.	+	.	gene_id "jcn_only_AA.10"; transcript_id "jcn_only_AA.10"; gene_name ""; flanks "52028465-,52034808^"; structure "1-,2-"; splice_chain "52034621-,52034808-";
chr12	juncbase	jcn_only_AA	48272898	48298738	.	-	.	gene_id "jcn_only_AA.11"; transcript_id "jcn_only_AA.11"; gene_name "CUFF.1477"; flanks "48272898-,48298738^"; structure "1-,2-"; splice_chain "48293741-,48272898-";
chr12	juncbase	jcn_only_AA	48276557	48298738	.	-	.	gene_id "jcn_only_AA.12"; transcript_id "jcn_only_AA.12"; gene_name "CUFF.1477"; flanks "48276557-,48298738^"; structure "1-,2-"; splice_chain "48293741-,48276557-";
chr12	juncbase	jcn_only_AD	102874097	102869577	.	-	.	gene_id "jcn_only_AD.11"; transcript_id "jcn_only_AD.11"; gene_name "CUFF.1532"; flanks "102874097-,102869577^"; structure "1^,2^"; splice_chain "102874097^,102872265^";
chr12	juncbase	alternative_acceptor	22666324	22676360	.	-	.	gene_id "alternative_acceptor.6"; transcript_id "alternative_acceptor.6"; gene_name "CUFF.1466"; flanks "22666324-,22676360^"; structure "1-,2-"; splice_chain "22671071-,22666324-";
chr12	juncbase	alternative_acceptor	22672173	22676360	.	-	.	gene_id "alternative_acceptor.7"; transcript_id "alternative_acceptor.7"; gene_name "CUFF.1466"; flanks "22672173-,22676360^"; structure "1-,2-"; splice_chain "22672173-,22671071-";
chr12	juncbase	cassette	7090756	7088741	.	-	.	gene_id "cassette.4"; transcript_id "cassette.4"; gene_name "CUFF.1450"; flanks "7090756-,7088741^"; structure "0,1-2^"; splice_chain ",7090344-7090166^";
chr12	juncbase	cassette	120148345	120146123	.	-	.	gene_id "cassette.5"; transcript_id "cassette.5"; gene_name "CUFF.1544"; flanks "120148345-,120146123^"; structure "0,1-2^"; splice_chain ",120148191-120148056^";
chr12	juncbase	intron_retention	58017881	58018649	.	+	.	gene_id "intron_retention.5"; transcript_id "intron_retention.5"; gene_name ""; flanks "58017881-,58018649^"; structure "0,1^2-"; splice_chain ",58017881^58018649-";
chr12	juncbase	jcn_only_AA	21200151	21207513	.	+	.	gene_id "jcn_only_AA.13"; transcript_id "jcn_only_AA.13"; gene_name "CUFF.1462,CUFF.1500"; flanks "21200151-,21207513^"; structure "1-,2-"; splice_chain "21201646-,21207513-";
chr12	juncbase	alternative_acceptor	49332630	49351093	.	-	.	gene_id "alternative_acceptor.8"; transcript_id "alternative_acceptor.8"; gene_name "CUFF.1485"; flanks "49332630-,49351093^"; structure "1-,2-"; splice_chain "49335360-,49332630-";
chr12	juncbase	alternative_acceptor	49349980	49351093	.	-	.	gene_id "alternative_acceptor.9"; transcript_id "alternative_acceptor.9"; gene_name "CUFF.1485"; flanks "49349980-,49351093^"; structure "1-,2-"; splice_chain "49349980-,49335360-";
chr12	juncbase	alternative_acceptor	49350318	49351093	.	-	.	gene_id "alternative_acceptor.10"; transcript_id "alternative_acceptor.10"; gene_name "CUFF.1485"; flanks "49350318-,49351093^"; structure "1-,2-"; splice_chain "49350318-,49335360-";
chr12	juncbase	jcn_only_AA	22671071	22676360	.	-	.	gene_id "jcn_only_AA.14"; transcript_id "jcn_only_AA.14"; gene_name "CUFF.1466"; flanks "22671071-,22676360^"; structure "1-,2-"; splice_chain "22671071-,22666324-";
chr12	juncbase	jcn_only_AA	22672173	22676360	.	-	.	gene_id "jcn_only_AA.15"; transcript_id "jcn_only_AA.15"; gene_name "CUFF.1466"; flanks "22672173-,22676360^"; structure "1-,2-"; splice_chain "22672173-,22666324-";
chr12	juncbase	intron_retention	58018389	58018507	.	+	.	gene_id "intron_retention.6"; transcript_id "intron_retention.6"; gene_name "CUFF.1518"; flanks "58018389-,58018507^"; structure "0,1^2-"; splice_chain ",58018389^58018507-";
chr12	juncbase	cassette	56577959	56575863	.	-	.	gene_id "cassette.6"; transcript_id "cassette.6"; gene_name "CUFF.1513"; flanks "56577959-,56575863^"; structure "0,1-2^"; splice_chain ",56577714-56577645^";
chr12	juncbase	jcn_only_AA	333282	333567	.	-	.	gene_id "jcn_only_AA.16"; transcript_id "jcn_only_AA.16"; gene_name "CUFF.1436"; flanks "333282-,333567^"; structure "1-,2-"; splice_chain "333295-,333282-";
chr12	juncbase	jcn_only_AA	48272898	48293620	.	-	.	gene_id "jcn_only_AA.17"; transcript_id "jcn_only_AA.17"; gene_name ""; flanks "48272898-,48293620^"; structure "1-,2-"; splice_chain "48276557-,48272898-";
chr12	juncbase	intron_retention	58018576	58018649	.	+	.	gene_id "intron_retention.7"; transcript_id "intron_retention.7"; gene_name "CUFF.1518"; flanks "58018576-,58018649^"; structure "0,1^2-"; splice_chain ",58018576^58018649-";
chr12	juncbase	alternative_donor	69202271	69202988	.	+	.	gene_id "alternative_donor.10"; transcript_id "alternative_donor.10"; gene_name "CUFF.1521"; flanks "69202271-,69202988^"; structure "1^,2^"; splice_chain "69202271^,69202866^";
chr12	juncbase	jcn_only_AD	77256956	77254193	.	-	.	gene_id "jcn_only_AD.12"; transcript_id "jcn_only_AD.12"; gene_name "CUFF.1531"; flanks "77256956-,77254193^"; structure "1^,2^"; splice_chain "77256956^,77256590^";
chr12	juncbase	intron_retention	56575266	56574885	.	-	.	gene_id "intron_retention.8"; transcript_id "intron_retention.8"; gene_name "CUFF.1513"; flanks "56575266-,56574885^"; structure "0,1^2-"; splice_chain ",56575266^56574885-";
chr12	juncbase	alternative_donor	113618786	113617810	.	-	.	gene_id "alternative_donor.11"; transcript_id "alternative_donor.11"; gene_name ""; flanks "113618786-,113617810^"; structure "1^,2^"; splice_chain "113618786^,113618734^";
chr12	juncbase	cassette	56566212	56565216	.	-	.	gene_id "cassette.7"; transcript_id "cassette.7"; gene_name "CUFF.1513"; flanks "56566212-,56565216^"; structure "0,1-2^"; splice_chain ",56565721-56565463^";
chr12	juncbase	intron_retention	7090972	7090793	.	-	.	gene_id "intron_retention.9"; transcript_id "intron_retention.9"; gene_name "CUFF.1450"; flanks "7090972-,7090793^"; structure "0,1^2-"; splice_chain ",7090972^7090793-";
chr12	juncbase	jcn_only_AA	120156621	120158283	.	-	.	gene_id "jcn_only_AA.18"; transcript_id "jcn_only_AA.18"; gene_name "CUFF.1544"; flanks "120156621-,120158283^"; structure "1-,2-"; splice_chain "120156666-,120156621-";
chr12	juncbase	jcn_only_AA	53853187	53854799	.	+	.	gene_id "jcn_only_AA.19"; transcript_id "jcn_only_AA.19"; gene_name "CUFF.1500"; flanks "53853187-,53854799^"; structure "1-,2-"; splice_chain "53854115-,53854799-";
chr12	juncbase	jcn_only_AA	53853187	53853584	.	+	.	gene_id "jcn_only_AA.20"; transcript_id "jcn_only_AA.20"; gene_name "CUFF.1500"; flanks "53853187-,53853584^"; structure "1-,2-"; splice_chain "53853584-,53854115-";
chr12	juncbase	jcn_only_AA	113646064	113658802	.	-	.	gene_id "jcn_only_AA.21"; transcript_id "jcn_only_AA.21"; gene_name "CUFF.1542"; flanks "113646064-,113658802^"; structure "1-,2-"; splice_chain "113646314-,113646064-";
chr12	juncbase	jcn_only_AD	21229503	21279042	.	+	.	gene_id "jcn_only_AD.13"; transcript_id "jcn_only_AD.13"; gene_name "CUFF.1462"; flanks "21229503-,21279042^"; structure "1^,2^"; splice_chain "21229503^,21242863^";
chr12	juncbase	jcn_only_AD	21272561	21279042	.	+	.	gene_id "jcn_only_AD.14"; transcript_id "jcn_only_AD.14"; gene_name "CUFF.1462"; flanks "21272561-,21279042^"; structure "1^,2^"; splice_chain "21242863^,21272561^";
chr12	juncbase	intron_retention	52407656	52407559	.	-	.	gene_id "intron_retention.10"; transcript_id "intron_retention.10"; gene_name ""; flanks "52407656-,52407559^"; structure "0,1^2-"; splice_chain ",52407656^52407559-";
chr12	juncbase	intron_retention	102874365	102874178	.	-	.	gene_id "intron_retention.11"; transcript_id "intron_retention.11"; gene_name "CUFF.1532"; flanks "102874365-,102874178^"; structure "0,1^2-"; splice_chain ",102874365^102874178-";
chr12	juncbase	cassette	49349881	49334971	.	-	.	gene_id "cassette.8"; transcript_id "cassette.8"; gene_name "CUFF.1485"; flanks "49349881-,49334971^"; structure "0,1-2^"; splice_chain ",49347057-49346896^";
chr12	juncbase	intron_retention	56579939	56578876	.	-	.	gene_id "intron_retention.12"; transcript_id "intron_retention.12"; gene_name ""; flanks "56579939-,56578876^"; structure "0,1^2-"; splice_chain ",56579939^56578876-";
chr12	juncbase	intron_retention	53861077	53861589	.	+	.	gene_id "intron_retention.13"; transcript_id "intron_retention.13"; gene_name ""; flanks "53861077-,53861589^"; structure "0,1^2-"; splice_chain ",53861077^53861589-";
chr12	juncbase	cassette	49351093	49334971	.	-	.	gene_id "cassette.9"; transcript_id "cassette.9"; gene_name "CUFF.1485"; flanks "49351093-,49334971^"; structure "0,1-2^"; splice_chain ",49350318-49349881^";
chr12	juncbase	intron_retention	13364522	13366413	.	+	.	gene_id "intron_retention.14"; transcript_id "intron_retention.14"; gene_name "CUFF.1455"; flanks "13364522-,13366413^"; structure "0,1^2-"; splice_chain ",13364522^13366413-";
chr12	juncbase	jcn_only_AA	49335360	49351093	.	-	.	gene_id "jcn_only_AA.22"; transcript_id "jcn_only_AA.22"; gene_name "CUFF.1485"; flanks "49335360-,49351093^"; structure "1-,2-"; splice_chain "49349980-,49335360-";
chr12	juncbase	jcn_only_AA	49332630	49351093	.	-	.	gene_id "jcn_only_AA.23"; transcript_id "jcn_only_AA.23"; gene_name "CUFF.1485"; flanks "49332630-,49351093^"; structure "1-,2-"; splice_chain "49349980-,49332630-";
chr12	juncbase	jcn_only_AA	49350318	49351093	.	-	.	gene_id "jcn_only_AA.24"; transcript_id "jcn_only_AA.24"; gene_name "CUFF.1485"; flanks "49350318-,49351093^"; structure "1-,2-"; splice_chain "49350318-,49349980-";
chr12	juncbase	cassette	120210574	120204986	.	-	.	gene_id "cassette.10"; transcript_id "cassette.10"; gene_name "CUFF.1544"; flanks "120210574-,120204986^"; structure "0,1-2^"; splice_chain ",120208714-120208589^";
chr12	juncbase	alternative_donor	53853187	53854799	.	+	.	gene_id "alternative_donor.12"; transcript_id "alternative_donor.12"; gene_name "CUFF.1500"; flanks "53853187-,53854799^"; structure "1^,2^"; splice_chain "53853187^,53854209^";
chr12	juncbase	jcn_only_AD	113645243	113633694	.	-	.	gene_id "jcn_only_AD.15"; transcript_id "jcn_only_AD.15"; gene_name "CUFF.1542"; flanks "113645243-,113633694^"; structure "1^,2^"; splice_chain "113645243^,113635346^";
chr12	juncbase	intron_retention	72094805	72097757	.	+	.	gene_id "intron_retention.15"; transcript_id "intron_retention.15"; gene_name "CUFF.1528"; flanks "72094805-,72097757^"; structure "0,1^2-"; splice_chain ",72094805^72097757-";
chr12	juncbase	intron_retention	48393702	48392214	.	-	.	gene_id "intron_retention.16"; transcript_id "intron_retention.16"; gene_name ""; flanks "48393702-,48392214^"; structure "0,1^2-"; splice_chain ",48393702^48392214-";
chr12	juncbase	cassette	25801428	25679889	.	-	.	gene_id "cassette.11"; transcript_id "cassette.11"; gene_name "CUFF.1467"; flanks "25801428-,25679889^"; structure "0,1-2^"; splice_chain ",25699488-25699308^";
chr12	juncbase	jcn_only_AD	48398020	48393908	.	-	.	gene_id "jcn_only_AD.16"; transcript_id "jcn_only_AD.16"; gene_name "CUFF.1480,CUFF.1531"; flanks "48398020-,48393908^"; structure "1^,2^"; splice_chain "48398020^,48394768^";
chr12	juncbase	intron_retention	13366755	13367505	.	+	.	gene_id "intron_retention.17"; transcript_id "intron_retention.17"; gene_name "CUFF.1455"; flanks "13366755-,13367505^"; structure "0,1^2-"; splice_chain ",13366755^13367505-";
chr12	juncbase	alternative_donor	113645243	113633694	.	-	.	gene_id "alternative_donor.13"; transcript_id "alternative_donor.13"; gene_name "CUFF.1542"; flanks "113645243-,113633694^"; structure "1^,2^"; splice_chain "113645243^,113635346^";
chr12	juncbase	cassette	69207408	69222551	.	+	.	gene_id "cassette.12"; transcript_id "cassette.12"; gene_name "CUFF.1521"; flanks "69207408-,69222551^"; structure "0,1-2^"; splice_chain ",69214105-69214154^";
chr12	juncbase	cassette	69207408	69233054	.	+	.	gene_id "cassette.13"; transcript_id "cassette.13"; gene_name "CUFF.1521"; flanks "69207408-,69233054^"; structure "0,1-2^"; splice_chain ",69214105-69214154^";
chr12	juncbase	cassette	69207408	69218143	.	+	.	gene_id "cassette.14"; transcript_id "cassette.14"; gene_name "CUFF.1521"; flanks "69207408-,69218143^"; structure "0,1-2^"; splice_chain ",69214105-69214154^";
chr12	juncbase	cassette	69203072	69218143	.	+	.	gene_id "cassette.15"; transcript_id "cassette.15"; gene_name "CUFF.1521"; flanks "69203072-,69218143^"; structure "0,1-2^"; splice_chain ",69214105-69214154^";
chr12	juncbase	cassette	69203072	69233054	.	+	.	gene_id "cassette.16"; transcript_id "cassette.16"; gene_name "CUFF.1521"; flanks "69203072-,69233054^"; structure "0,1-2^"; splice_chain ",69214105-69214154^";
chr12	juncbase	jcn_only_AA	25673009	25679703	.	-	.	gene_id "jcn_only_AA.25"; transcript_id "jcn_only_AA.25"; gene_name "CUFF.1467"; flanks "25673009-,25679703^"; structure "1-,2-"; splice_chain "25679152-,25673009-";
chr12	juncbase	jcn_only_AA	57854338	57858456	.	+	.	gene_id "jcn_only_AA.26"; transcript_id "jcn_only_AA.26"; gene_name ""; flanks "57854338-,57858456^"; structure "1-,2-"; splice_chain "57857448-,57858456-";
chr12	juncbase	jcn_only_AA	120128256	120135464	.	-	.	gene_id "jcn_only_AA.27"; transcript_id "jcn_only_AA.27"; gene_name "CUFF.1544"; flanks "120128256-,120135464^"; structure "1-,2-"; splice_chain "120128259-,120128256-";
chr12	juncbase	alternative_donor	4653070	4654385	.	+	.	gene_id "alternative_donor.14"; transcript_id "alternative_donor.14"; gene_name ""; flanks "4653070-,4654385^"; structure "1^,2^"; splice_chain "4653070^,4653077^";
chr12	juncbase	jcn_only_AA	56706669	56708635	.	-	.	gene_id "jcn_only_AA.28"; transcript_id "jcn_only_AA.28"; gene_name ""; flanks "56706669-,56708635^"; structure "1-,2-"; splice_chain "56706669-,56705179-";
chr12	juncbase	jcn_only_AA	56705237	56708635	.	-	.	gene_id "jcn_only_AA.29"; transcript_id "jcn_only_AA.29"; gene_name ""; flanks "56705237-,56708635^"; structure "1-,2-"; splice_chain "56705237-,56705179-";
chr12	juncbase	jcn_only_AA	56705198	56708635	.	-	.	gene_id "jcn_only_AA.30"; transcript_id "jcn_only_AA.30"; gene_name ""; flanks "56705198-,56708635^"; structure "1-,2-"; splice_chain "56705198-,56705179-";
chr12	juncbase	jcn_only_AD	48272751	48258960	.	-	.	gene_id "jcn_only_AD.17"; transcript_id "jcn_only_AD.17"; gene_name "CUFF.1477"; flanks "48272751-,48258960^"; structure "1^,2^"; splice_chain "48272751^,48272599^";
chr12	juncbase	jcn_only_AA	26205929	26208212	.	+	.	gene_id "jcn_only_AA.31"; transcript_id "jcn_only_AA.31"; gene_name "CUFF.1469"; flanks "26205929-,26208212^"; structure "1-,2-"; splice_chain "26208169-,26208212-";
chr12	juncbase	jcn_only_AD	53853187	53854799	.	+	.	gene_id "jcn_only_AD.18"; transcript_id "jcn_only_AD.18"; gene_name "CUFF.1500"; flanks "53853187-,53854799^"; structure "1^,2^"; splice_chain "53853187^,53854209^";
chr12	juncbase	jcn_only_AD	22631247	22627825	.	-	.	gene_id "jcn_only_AD.19"; transcript_id "jcn_only_AD.19"; gene_name "CUFF.1466"; flanks "22631247-,22627825^"; structure "1^,2^"; splice_chain "22631247^,22630196^";
chr12	juncbase	alternative_acceptor	26205535	26208212	.	+	.	gene_id "alternative_acceptor.11"; transcript_id "alternative_acceptor.11"; gene_name ""; flanks "26205535-,26208212^"; structure "1-,2-"; splice_chain "26208169-,26208212-";
chr12	juncbase	jcn_only_AD	22672049	22666313	.	-	.	gene_id "jcn_only_AD.20"; transcript_id "jcn_only_AD.20"; gene_name ""; flanks "22672049-,22666313^"; structure "1^,2^"; splice_chain "22672049^,22670920^";
chr12	juncbase	alternative_donor	77256956	77254193	.	-	.	gene_id "alternative_donor.15"; transcript_id "alternative_donor.15"; gene_name "CUFF.1531"; flanks "77256956-,77254193^"; structure "1^,2^"; splice_chain "77256956^,77256590^";
chr12	juncbase	alternative_donor	48398020	48393908	.	-	.	gene_id "alternative_donor.16"; transcript_id "alternative_donor.16"; gene_name "CUFF.1480,CUFF.1531"; flanks "48398020-,48393908^"; structure "1^,2^"; splice_chain "48398020^,48394768^";
chr12	juncbase	alternative_donor	22631247	22627825	.	-	.	gene_id "alternative_donor.17"; transcript_id "alternative_donor.17"; gene_name "CUFF.1466"; flanks "22631247-,22627825^"; structure "1^,2^"; splice_chain "22631247^,22630196^";
chr12	juncbase	cassette	371955	352979	.	-	.	gene_id "cassette.17"; transcript_id "cassette.17"; gene_name "CUFF.1436"; flanks "371955-,352979^"; structure "0,1-2^"; splice_chain ",369223-369017^";
chr12	juncbase	alternative_donor	102874097	102869577	.	-	.	gene_id "alternative_donor.18"; transcript_id "alternative_donor.18"; gene_name "CUFF.1532"; flanks "102874097-,102869577^"; structure "1^,2^"; splice_chain "102874097^,102872265^";
chr12	juncbase	jcn_only_AD	344256	332400	.	-	.	gene_id "jcn_only_AD.21"; transcript_id "jcn_only_AD.21"; gene_name "CUFF.1436,CUFF.1450"; flanks "344256-,332400^"; structure "1^,2^"; splice_chain "344256^,332912^";
chr12	juncbase	jcn_only_AD	333158	332400	.	-	.	gene_id "jcn_only_AD.22"; transcript_id "jcn_only_AD.22"; gene_name "CUFF.1436,CUFF.1450"; flanks "333158-,332400^"; structure "1^,2^"; splice_chain "333158^,332912^";
chr12	juncbase	jcn_only_AD	1742071	1754960	.	+	.	gene_id "jcn_only_AD.23"; transcript_id "jcn_only_AD.23"; gene_name "CUFF.1437"; flanks "1742071-,1754960^"; structure "1^,2^"; splice_chain "1742071^,1754227^";
chr12	juncbase	jcn_only_AD	1749142	1754960	.	+	.	gene_id "jcn_only_AD.24"; transcript_id "jcn_only_AD.24"; gene_name "CUFF.1437"; flanks "1749142-,1754960^"; structure "1^,2^"; splice_chain "1749142^,1754227^";
chr12	juncbase	intron_retention	58019470	58019781	.	+	.	gene_id "intron_retention.18"; transcript_id "intron_retention.18"; gene_name "CUFF.1518"; flanks "58019470-,58019781^"; structure "0,1^2-"; splice_chain ",58019470^58019781-";
chr12	juncbase	jcn_only_AD	21242863	21279042	.	+	.	gene_id "jcn_only_AD.25"; transcript_id "jcn_only_AD.25"; gene_name "CUFF.1462"; flanks "21242863-,21279042^"; structure "1^,2^"; splice_chain "21229503^,21242863^";
chr12	juncbase	jcn_only_AD	21272561	21279042	.	+	.	gene_id "jcn_only_AD.26"; transcript_id "jcn_only_AD.26"; gene_name "CUFF.1462"; flanks "21272561-,21279042^"; structure "1^,2^"; splice_chain "21229503^,21272561^";
chr12	juncbase	alternative_acceptor	49335360	49351093	.	-	.	gene_id "alternative_acceptor.12"; transcript_id "alternative_acceptor.12"; gene_name "CUFF.1485"; flanks "49335360-,49351093^"; structure "1-,2-"; splice_chain "49335360-,49332630-";
chr12	juncbase	alternative_acceptor	49349980	49351093	.	-	.	gene_id "alternative_acceptor.13"; transcript_id "alternative_acceptor.13"; gene_name "CUFF.1485"; flanks "49349980-,49351093^"; structure "1-,2-"; splice_chain "49349980-,49332630-";
chr12	juncbase	alternative_acceptor	49350318	49351093	.	-	.	gene_id "alternative_acceptor.14"; transcript_id "alternative_acceptor.14"; gene_name "CUFF.1485"; flanks "49350318-,49351093^"; structure "1-,2-"; splice_chain "49350318-,49332630-";
chr12	juncbase	intron_retention	335819	335680	.	-	.	gene_id "intron_retention.19"; transcript_id "intron_retention.19"; gene_name "CUFF.1436"; flanks "335819-,335680^"; structure "0,1^2-"; splice_chain ",335819^335680-";
chr12	juncbase	intron_retention	56708635	56705237	.	-	.	gene_id "intron_retention.20"; transcript_id "intron_retention.20"; gene_name ""; flanks "56708635-,56705237^"; structure "0,1^2-"; splice_chain ",56708635^56705237-";
chr12	juncbase	jcn_only_AD	1754227	1754960	.	+	.	gene_id "jcn_only_AD.27"; transcript_id "jcn_only_AD.27"; gene_name "CUFF.1437"; flanks "1754227-,1754960^"; structure "1^,2^"; splice_chain "1742071^,1754227^";
chr12	juncbase	jcn_only_AD	1749142	1754960	.	+	.	gene_id "jcn_only_AD.28"; transcript_id "jcn_only_AD.28"; gene_name "CUFF.1437"; flanks "1749142-,1754960^"; structure "1^,2^"; splice_chain "1742071^,1749142^";
chr12	juncbase	jcn_only_AD	77272743	77260041	.	-	.	gene_id "jcn_only_AD.29"; transcript_id "jcn_only_AD.29"; gene_name "CUFF.1531"; flanks "77272743-,77260041^"; structure "1^,2^"; splice_chain "77272743^,77272718^";
chr12	juncbase	alternative_acceptor	347176	369017	.	-	.	gene_id "alternative_acceptor.15"; transcript_id "alternative_acceptor.15"; gene_name "CUFF.1436"; flanks "347176-,369017^"; structure "1-,2-"; splice_chain "352979-,347176-";
chr12	juncbase	intron_retention	7087583	7086687	.	-	.	gene_id "intron_retention.21"; transcript_id "intron_retention.21"; gene_name ""; flanks "7087583-,7086687^"; structure "0,1^2-"; splice_chain ",7087583^7086687-";
chr12	juncbase	alternative_donor	72094658	72097757	.	+	.	gene_id "alternative_donor.19"; transcript_id "alternative_donor.19"; gene_name "CUFF.1528"; flanks "72094658-,72097757^"; structure "1^,2^"; splice_chain "72094658^,72094805^";
chr12	juncbase	intron_retention	56558432	56558152	.	-	.	gene_id "intron_retention.22"; transcript_id "intron_retention.22"; gene_name "CUFF.1513"; flanks "56558432-,56558152^"; structure "0,1^2-"; splice_chain ",56558432^56558152-";
chr12	juncbase	cassette	7125578	7092700	.	-	.	gene_id "cassette.18"; transcript_id "cassette.18"; gene_name "CUFF.1450"; flanks "7125578-,7092700^"; structure "0,1-2^"; splice_chain ",7108791-7108733^";
chr12	juncbase	jcn_only_AD	22676360	22671071	.	-	.	gene_id "jcn_only_AD.30"; transcript_id "jcn_only_AD.30"; gene_name "CUFF.1466"; flanks "22676360-,22671071^"; structure "1^,2^"; splice_chain "22676360^,22671974^";
chr12	juncbase	jcn_only_AA	53854927	53856277	.	+	.	gene_id "jcn_only_AA.32"; transcript_id "jcn_only_AA.32"; gene_name "CUFF.1500"; flanks "53854927-,53856277^"; structure "1-,2-"; splice_chain "53856265-,53856277-";
chr12	juncbase	cassette	48398020	48392214	.	-	.	gene_id "cassette.19"; transcript_id "cassette.19"; gene_name "CUFF.1480"; flanks "48398020-,48392214^"; structure "0,1-2^"; splice_chain ",48393908-48393702^";
chr12	juncbase	jcn_only_AA	22666324	22676360	.	-	.	gene_id "jcn_only_AA.33"; transcript_id "jcn_only_AA.33"; gene_name "CUFF.1466"; flanks "22666324-,22676360^"; structure "1-,2-"; splice_chain "22671071-,22666324-";
chr12	juncbase	jcn_only_AA	22672173	22676360	.	-	.	gene_id "jcn_only_AA.34"; transcript_id "jcn_only_AA.34"; gene_name "CUFF.1466"; flanks "22672173-,22676360^"; structure "1-,2-"; splice_chain "22672173-,22671071-";
chr12	juncbase	cassette	13349806	13366413	.	+	.	gene_id "cassette.20"; transcript_id "cassette.20"; gene_name "CUFF.1455"; flanks "13349806-,13366413^"; structure "0,1-2^"; splice_chain ",13364403-13364522^";
chr12	juncbase	cassette	9723488	9725599	.	+	.	gene_id "cassette.21"; transcript_id "cassette.21"; gene_name "CUFF.1451"; flanks "9723488-,9725599^"; structure "0,1-2^"; splice_chain ",9724057-9724169^";
chr12	juncbase	jcn_only_AD	120149983	120148425	.	-	.	gene_id "jcn_only_AD.31"; transcript_id "jcn_only_AD.31"; gene_name "CUFF.1544"; flanks "120149983-,120148425^"; structure "1^,2^"; splice_chain "120149983^,120148854^";
chr12	juncbase	intron_retention	13366755	13367468	.	+	.	gene_id "intron_retention.23"; transcript_id "intron_retention.23"; gene_name "CUFF.1455"; flanks "13366755-,13367468^"; structure "0,1^2-"; splice_chain ",13366755^13367468-";
chr12	juncbase	alternative_acceptor	53471045	53473095	.	-	.	gene_id "alternative_acceptor.16"; transcript_id "alternative_acceptor.16"; gene_name "CUFF.1495"; flanks "53471045-,53473095^"; structure "1-,2-"; splice_chain "53471955-,53471045-";
chr12	juncbase	cassette	22612426	22610095	.	-	.	gene_id "cassette.22"; transcript_id "cassette.22"; gene_name "CUFF.1466"; flanks "22612426-,22610095^"; structure "0,1-2^"; splice_chain ",22611519-22611418^";
chr12	juncbase	alternative_acceptor	26205929	26208212	.	+	.	gene_id "alternative_acceptor.17"; transcript_id "alternative_acceptor.17"; gene_name "CUFF.1469"; flanks "26205929-,26208212^"; structure "1-,2-"; splice_chain "26208169-,26208212-";
chr12	juncbase	jcn_only_AA	56705179	56708635	.	-	.	gene_id "jcn_only_AA.35"; transcript_id "jcn_only_AA.35"; gene_name ""; flanks "56705179-,56708635^"; structure "1-,2-"; splice_chain "56705198-,56705179-";
chr12	juncbase	jcn_only_AA	56706669	56708635	.	-	.	gene_id "jcn_only_AA.36"; transcript_id "jcn_only_AA.36"; gene_name ""; flanks "56706669-,56708635^"; structure "1-,2-"; splice_chain "56706669-,56705198-";
chr12	juncbase	jcn_only_AA	56705237	56708635	.	-	.	gene_id "jcn_only_AA.37"; transcript_id "jcn_only_AA.37"; gene_name ""; flanks "56705237-,56708635^"; structure "1-,2-"; splice_chain "56705237-,56705198-";
chr12	juncbase	cassette	49350768	49334971	.	-	.	gene_id "cassette.23"; transcript_id "cassette.23"; gene_name "CUFF.1485"; flanks "49350768-,49334971^"; structure "0,1-2^"; splice_chain ",49350133-49349881^";
chr12	juncbase	alternative_acceptor	26148063	26208212	.	+	.	gene_id "alternative_acceptor.18"; transcript_id "alternative_acceptor.18"; gene_name ""; flanks "26148063-,26208212^"; structure "1-,2-"; splice_chain "26208169-,26208212-";
chr12	juncbase	intron_retention	56709605	56709026	.	-	.	gene_id "intron_retention.24"; transcript_id "intron_retention.24"; gene_name ""; flanks "56709605-,56709026^"; structure "0,1^2-"; splice_chain ",56709605^56709026-";
chr12	juncbase	intron_retention	69237044	69237521	.	+	.	gene_id "intron_retention.25"; transcript_id "intron_retention.25"; gene_name "CUFF.1521"; flanks "69237044-,69237521^"; structure "0,1^2-"; splice_chain ",69237044^69237521-";
chr12	juncbase	intron_retention	56708635	56705198	.	-	.	gene_id "intron_retention.26"; transcript_id "intron_retention.26"; gene_name ""; flanks "56708635-,56705198^"; structure "0,1^2-"; splice_chain ",56708635^56705198-";
chr12	juncbase	jcn_only_AA	49332630	49351093	.	-	.	gene_id "jcn_only_AA.38"; transcript_id "jcn_only_AA.38"; gene_name "CUFF.1485"; flanks "49332630-,49351093^"; structure "1-,2-"; splice_chain "49335360-,49332630-";
chr12	juncbase	jcn_only_AA	49349980	49351093	.	-	.	gene_id "jcn_only_AA.39"; transcript_id "jcn_only_AA.39"; gene_name "CUFF.1485"; flanks "49349980-,49351093^"; structure "1-,2-"; splice_chain "49349980-,49335360-";
chr12	juncbase	jcn_only_AA	49350318	49351093	.	-	.	gene_id "jcn_only_AA.40"; transcript_id "jcn_only_AA.40"; gene_name "CUFF.1485"; flanks "49350318-,49351093^"; structure "1-,2-"; splice_chain "49350318-,49335360-";
chr12	juncbase	intron_retention	77256590	77254193	.	-	.	gene_id "intron_retention.27"; transcript_id "intron_retention.27"; gene_name "CUFF.1531"; flanks "77256590-,77254193^"; structure "0,1^2-"; splice_chain ",77256590^77254193-";
chr12	juncbase	alternative_donor	77272743	77260041	.	-	.	gene_id "alternative_donor.20"; transcript_id "alternative_donor.20"; gene_name "CUFF.1531"; flanks "77272743-,77260041^"; structure "1^,2^"; splice_chain "77272743^,77272718^";
chr12	juncbase	cassette	4654478	4655475	.	+	.	gene_id "cassette.24"; transcript_id "cassette.24"; gene_name "CUFF.1443"; flanks "4654478-,4655475^"; structure "0,1-2^"; splice_chain ",4654948-4654998^";
chr12	juncbase	cassette	4653070	4655475	.	+	.	gene_id "cassette.25"; transcript_id "cassette.25"; gene_name "CUFF.1443"; flanks "4653070-,4655475^"; structure "0,1-2^"; splice_chain ",4654948-4654998^";
chr12	juncbase	intron_retention	53846759	53848510	.	+	.	gene_id "intron_retention.28"; transcript_id "intron_retention.28"; gene_name ""; flanks "53846759-,53848510^"; structure "0,1^2-"; splice_chain ",53846759^53848510-";
chr12	juncbase	alternative_acceptor	120156621	120158283	.	-	.	gene_id "alternative_acceptor.19"; transcript_id "alternative_acceptor.19"; gene_name "CUFF.1544"; flanks "120156621-,120158283^"; structure "1-,2-"; splice_chain "120156666-,120156621-";
chr12	juncbase	jcn_only_AA	53853187	53854115	.	+	.	gene_id "jcn_only_AA.41"; transcript_id "jcn_only_AA.41"; gene_name "CUFF.1500"; flanks "53853187-,53854115^"; structure "1-,2-"; splice_chain "53853584-,53854115-";
chr12	juncbase	jcn_only_AA	53853187	53854799	.	+	.	gene_id "jcn_only_AA.42"; transcript_id "jcn_only_AA.42"; gene_name "CUFF.1500"; flanks "53853187-,53854799^"; structure "1-,2-"; splice_chain "53853584-,53854799-";
chr12	juncbase	jcn_only_AD	113618786	113617810	.	-	.	gene_id "jcn_only_AD.32"; transcript_id "jcn_only_AD.32"; gene_name ""; flanks "113618786-,113617810^"; structure "1^,2^"; splice_chain "113618786^,113618734^";
chr12	juncbase	alternative_donor	52404925	52407471	.	+	.	gene_id "alternative_donor.21"; transcript_id "alternative_donor.21"; gene_name "CUFF.1491"; flanks "52404925-,52407471^"; structure "1^,2^"; splice_chain "52404925^,52404991^";
chr12	juncbase	intron_retention	72094658	72097757	.	+	.	gene_id "intron_retention.29"; transcript_id "intron_retention.29"; gene_name "CUFF.1528"; flanks "72094658-,72097757^"; structure "0,1^2-"; splice_chain ",72094658^72097757-";
chr12	juncbase	alternative_donor	13349806	13364403	.	+	.	gene_id "alternative_donor.22"; transcript_id "alternative_donor.22"; gene_name "CUFF.1455"; flanks "13349806-,13364403^"; structure "1^,2^"; splice_chain "13349806^,13352467^";
chr12	juncbase	intron_retention	58018389	58018649	.	+	.	gene_id "intron_retention.30"; transcript_id "intron_retention.30"; gene_name "CUFF.1518"; flanks "58018389-,58018649^"; structure "0,1^2-"; splice_chain ",58018389^58018649-";
chr12	juncbase	cassette	69207408	69214105	.	+	.	gene_id "cassette.26"; transcript_id "cassette.26"; gene_name "CUFF.1521"; flanks "69207408-,69214105^"; structure "0,1-2^"; splice_chain ",69210592-69210725^";
chr12	juncbase	cassette	69203072	69214105	.	+	.	gene_id "cassette.27"; transcript_id "cassette.27"; gene_name "CUFF.1521"; flanks "69203072-,69214105^"; structure "0,1-2^"; splice_chain ",69210592-69210725^";
chr12	juncbase	intron_retention	53849154	53849245	.	+	.	gene_id "intron_retention.31"; transcript_id "intron_retention.31"; gene_name "CUFF.1500"; flanks "53849154-,53849245^"; structure "0,1^2-"; splice_chain ",53849154^53849245-";
chr12	juncbase	jcn_only_AD	7087583	7086687	.	-	.	gene_id "jcn_only_AD.33"; transcript_id "jcn_only_AD.33"; gene_name ""; flanks "7087583-,7086687^"; structure "1^,2^"; splice_chain "7087583^,7086760^";
chr12	juncbase	jcn_only_AD	72094658	72097757	.	+	.	gene_id "jcn_only_AD.34"; transcript_id "jcn_only_AD.34"; gene_name "CUFF.1528"; flanks "72094658-,72097757^"; structure "1^,2^"; splice_chain "72094658^,72094805^";
chr12	juncbase	jcn_only_AD	133181292	133181170	.	-	.	gene_id "jcn_only_AD.35"; transcript_id "jcn_only_AD.35"; gene_name "CUFF.1547"; flanks "133181292-,133181170^"; structure "1^,2^"; splice_chain "133181292^,133181287^";
chr12	juncbase	jcn_only_AD	69202271	69202988	.	+	.	gene_id "jcn_only_AD.36"; transcript_id "jcn_only_AD.36"; gene_name "CUFF.1521"; flanks "69202271-,69202988^"; structure "1^,2^"; splice_chain "69202271^,69202866^";
chr12	juncbase	intron_retention	120135781	120135643	.	-	.	gene_id "intron_retention.32"; transcript_id "intron_retention.32"; gene_name "CUFF.1544"; flanks "120135781-,120135643^"; structure "0,1^2-"; splice_chain ",120135781^120135643-";
chr12	juncbase	intron_retention	52407564	52407661	.	+	.	gene_id "intron_retention.33"; transcript_id "intron_retention.33"; gene_name "CUFF.1491"; flanks "52407564-,52407661^"; structure "0,1^2-"; splice_chain ",52407564^52407661-";
chr12	juncbase	jcn_only_AA	77254193	77256956	.	-	.	gene_id "jcn_only_AA.43"; transcript_id "jcn_only_AA.43"; gene_name "CUFF.1531"; flanks "77254193-,77256956^"; structure "1-,2-"; splice_chain "77256739-,77254193-";
chr12	juncbase	cassette	58018939	58019193	.	+	.	gene_id "cassette.28"; transcript_id "cassette.28"; gene_name "CUFF.1518"; flanks "58018939-,58019193^"; structure "0,1-2^"; splice_chain ",58019019-58019101^";
chr12	juncbase	cassette	52963643	52962173	.	-	.	gene_id "cassette.29"; transcript_id "cassette.29"; gene_name "CUFF.1493"; flanks "52963643-,52962173^"; structure "0,1-2^"; splice_chain ",52963315-52963274^";
chr12	juncbase	intron_retention	11709018	11709870	.	+	.	gene_id "intron_retention.34"; transcript_id "intron_retention.34"; gene_name "CUFF.1453"; flanks "11709018-,11709870^"; structure "0,1^2-"; splice_chain ",11709018^11709870-";
chr12	juncbase	jcn_only_AD	53473095	53471045	.	-	.	gene_id "jcn_only_AD.37"; transcript_id "jcn_only_AD.37"; gene_name "CUFF.1495"; flanks "53473095-,53471045^"; structure "1^,2^"; splice_chain "53473095^,53471845^";
chr12	juncbase	jcn_only_AD	56709605	56709026	.	-	.	gene_id "jcn_only_AD.38"; transcript_id "jcn_only_AD.38"; gene_name "CUFF.1515"; flanks "56709605-,56709026^"; structure "1^,2^"; splice_chain "56709691^,56709605^";
chr12	juncbase	jcn_only_AD	56709501	56709026	.	-	.	gene_id "jcn_only_AD.39"; transcript_id "jcn_only_AD.39"; gene_name "CUFF.1515"; flanks "56709501-,56709026^"; structure "1^,2^"; splice_chain "56709691^,56709501^";
chr12	juncbase	cassette	69218210	69222551	.	+	.	gene_id "cassette.30"; transcript_id "cassette.30"; gene_name "CUFF.1521"; flanks "69218210-,69222551^"; structure "0,1-2^"; splice_chain ",69218335-69218431^";
chr12	juncbase	intron_retention	56577959	56577714	.	-	.	gene_id "intron_retention.35"; transcript_id "intron_retention.35"; gene_name "CUFF.1513"; flanks "56577959-,56577714^"; structure "0,1^2-"; splice_chain ",56577959^56577714-";
chr12	juncbase	alternative_acceptor	57857574	57858486	.	+	.	gene_id "alternative_acceptor.20"; transcript_id "alternative_acceptor.20"; gene_name "CUFF.1469,CUFF.1516"; flanks "57857574-,57858486^"; structure "1-,2-"; splice_chain "57857782-,57858486-";
chr12	juncbase	alternative_acceptor	333282	333567	.	-	.	gene_id "alternative_acceptor.21"; transcript_id "alternative_acceptor.21"; gene_name "CUFF.1436"; flanks "333282-,333567^"; structure "1-,2-"; splice_chain "333295-,333282-";
chr12	juncbase	jcn_only_AD	13349806	13364403	.	+	.	gene_id "jcn_only_AD.40"; transcript_id "jcn_only_AD.40"; gene_name "CUFF.1455"; flanks "13349806-,13364403^"; structure "1^,2^"; splice_chain "13349806^,13352467^";
chr12	juncbase	alternative_donor	113600737	113599802	.	-	.	gene_id "alternative_donor.23"; transcript_id "alternative_donor.23"; gene_name "CUFF.1541"; flanks "113600737-,113599802^"; structure "1^,2^"; splice_chain "113600737^,113600701^";
chr12	juncbase	intron_retention	120148854	120148425	.	-	.	gene_id "intron_retention.36"; transcript_id "intron_retention.36"; gene_name "CUFF.1544"; flanks "120148854-,120148425^"; structure "0,1^2-"; splice_chain ",120148854^120148425-";
chr12	juncbase	cassette	49351093	49334971	.	-	.	gene_id "cassette.31"; transcript_id "cassette.31"; gene_name "CUFF.1485"; flanks "49351093-,49334971^"; structure "0,1-2^"; splice_chain ",49349980-49349881^";
chr12	juncbase	intron_retention	26205535	26208212	.	+	.	gene_id "intron_retention.37"; transcript_id "intron_retention.37"; gene_name ""; flanks "26205535-,26208212^"; structure "0,1^2-"; splice_chain ",26205535^26208212-";
chr12	juncbase	alternative_donor	4430469	4440446	.	+	.	gene_id "alternative_donor.24"; transcript_id "alternative_donor.24"; gene_name "CUFF.1444"; flanks "4430469-,4440446^"; structure "1^,2^"; splice_chain "4430469^,4433929^";
chr12	juncbase	cassette	27627846	27641393	.	+	.	gene_id "cassette.32"; transcript_id "cassette.32"; gene_name "CUFF.1471"; flanks "27627846-,27641393^"; structure "0,1-2^"; splice_chain ",27628515-27628664^";
chr12	juncbase	jcn_only_AA	49335360	49351093	.	-	.	gene_id "jcn_only_AA.44"; transcript_id "jcn_only_AA.44"; gene_name "CUFF.1485"; flanks "49335360-,49351093^"; structure "1-,2-"; splice_chain "49335360-,49332630-";
chr12	juncbase	jcn_only_AA	49349980	49351093	.	-	.	gene_id "jcn_only_AA.45"; transcript_id "jcn_only_AA.45"; gene_name "CUFF.1485"; flanks "49349980-,49351093^"; structure "1-,2-"; splice_chain "49349980-,49332630-";
chr12	juncbase	jcn_only_AA	49350318	49351093	.	-	.	gene_id "jcn_only_AA.46"; transcript_id "jcn_only_AA.46"; gene_name "CUFF.1485"; flanks "49350318-,49351093^"; structure "1-,2-"; splice_chain "49350318-,49332630-";
chr12	juncbase	alternative_acceptor	13366755	13367505	.	+	.	gene_id "alternative_acceptor.22"; transcript_id "alternative_acceptor.22"; gene_name "CUFF.1455"; flanks "13366755-,13367505^"; structure "1-,2-"; splice_chain "13367468-,13367505-";
chr12	juncbase	alternative_acceptor	53853187	53854115	.	+	.	gene_id "alternative_acceptor.23"; transcript_id "alternative_acceptor.23"; gene_name "CUFF.1500"; flanks "53853187-,53854115^"; structure "1-,2-"; splice_chain "53854115-,53854799-";
chr12	juncbase	alternative_acceptor	53853187	53853584	.	+	.	gene_id "alternative_acceptor.24"; transcript_id "alternative_acceptor.24"; gene_name "CUFF.1500"; flanks "53853187-,53853584^"; structure "1-,2-"; splice_chain "53853584-,53854799-";
chr12	juncbase	jcn_only_AD	56709691	56709026	.	-	.	gene_id "jcn_only_AD.41"; transcript_id "jcn_only_AD.41"; gene_name ""; flanks "56709691-,56709026^"; structure "1^,2^"; splice_chain "56709691^,56709605^";
chr12	juncbase	jcn_only_AD	56709501	56709026	.	-	.	gene_id "jcn_only_AD.42"; transcript_id "jcn_only_AD.42"; gene_name ""; flanks "56709501-,56709026^"; structure "1^,2^"; splice_chain "56709605^,56709501^";
chr12	juncbase	intron_retention	347337	347176	.	-	.	gene_id "intron_retention.38"; transcript_id "intron_retention.38"; gene_name "CUFF.1436"; flanks "347337-,347176^"; structure "0,1^2-"; splice_chain ",347337^347176-";
chr12	juncbase	jcn_only_AD	56709605	56709026	.	-	.	gene_id "jcn_only_AD.43"; transcript_id "jcn_only_AD.43"; gene_name "CUFF.1477,CUFF.1515"; flanks "56709605-,56709026^"; structure "1^,2^"; splice_chain "56709605^,56709501^";
chr12	juncbase	jcn_only_AD	56709691	56709026	.	-	.	gene_id "jcn_only_AD.44"; transcript_id "jcn_only_AD.44"; gene_name "CUFF.1477,CUFF.1515"; flanks "56709691-,56709026^"; structure "1^,2^"; splice_chain "56709691^,56709501^";
chr12	juncbase	jcn_only_AD	1742071	1754960	.	+	.	gene_id "jcn_only_AD.45"; transcript_id "jcn_only_AD.45"; gene_name "CUFF.1437"; flanks "1742071-,1754960^"; structure "1^,2^"; splice_chain "1742071^,1749142^";
chr12	juncbase	jcn_only_AD	1754227	1754960	.	+	.	gene_id "jcn_only_AD.46"; transcript_id "jcn_only_AD.46"; gene_name "CUFF.1437"; flanks "1754227-,1754960^"; structure "1^,2^"; splice_chain "1749142^,1754227^";
chr12	juncbase	jcn_only_AA	13366509	13369378	.	+	.	gene_id "jcn_only_AA.47"; transcript_id "jcn_only_AA.47"; gene_name "CUFF.1469"; flanks "13366509-,13369378^"; structure "1-,2-"; splice_chain "13366615-,13369378-";
chr12	juncbase	alternative_donor	336731	335680	.	-	.	gene_id "alternative_donor.25"; transcript_id "alternative_donor.25"; gene_name "CUFF.1436"; flanks "336731-,335680^"; structure "1^,2^"; splice_chain "336731^,335819^";
chr12	juncbase	intron_retention	48298738	48276557	.	-	.	gene_id "intron_retention.39"; transcript_id "intron_retention.39"; gene_name "CUFF.1477"; flanks "48298738-,48276557^"; structure "0,1^2-"; splice_chain ",48298738^48276557-";
chr12	juncbase	alternative_donor	133181292	133181170	.	-	.	gene_id "alternative_donor.26"; transcript_id "alternative_donor.26"; gene_name "CUFF.1547"; flanks "133181292-,133181170^"; structure "1^,2^"; splice_chain "133181292^,133181287^";
chr12	juncbase	jcn_only_AA	332400	333158	.	-	.	gene_id "jcn_only_AA.48"; transcript_id "jcn_only_AA.48"; gene_name "CUFF.1436"; flanks "332400-,333158^"; structure "1-,2-"; splice_chain "333011-,332400-";
chr12	juncbase	jcn_only_AA	21229507	21242847	.	+	.	gene_id "jcn_only_AA.49"; transcript_id "jcn_only_AA.49"; gene_name ""; flanks "21229507-,21242847^"; structure "1-,2-"; splice_chain "21242845-,21242847-";
chr12	juncbase	alternative_donor	58014836	58015046	.	+	.	gene_id "alternative_donor.27"; transcript_id "alternative_donor.27"; gene_name "CUFF.1518"; flanks "58014836-,58015046^"; structure "1^,2^"; splice_chain "58014836^,58014875^";
chr12	juncbase	cassette	69229764	69233054	.	+	.	gene_id "cassette.33"; transcript_id "cassette.33"; gene_name "CUFF.1521"; flanks "69229764-,69233054^"; structure "0,1-2^"; splice_chain ",69230452-69230529^";
chr12	juncbase	intron_retention	56708914	56708750	.	-	.	gene_id "intron_retention.40"; transcript_id "intron_retention.40"; gene_name ""; flanks "56708914-,56708750^"; structure "0,1^2-"; splice_chain ",56708914^56708750-";
chr12	juncbase	intron_retention	11461583	11461375	.	-	.	gene_id "intron_retention.41"; transcript_id "intron_retention.41"; gene_name "CUFF.1452"; flanks "11461583-,11461375^"; structure "0,1^2-"; splice_chain ",11461583^11461375-";
chr12	juncbase	alternative_donor	48272751	48258960	.	-	.	gene_id "alternative_donor.28"; transcript_id "alternative_donor.28"; gene_name "CUFF.1477"; flanks "48272751-,48258960^"; structure "1^,2^"; splice_chain "48272751^,48272599^";
chr12	juncbase	intron_retention	7090972	7090344	.	-	.	gene_id "intron_retention.42"; transcript_id "intron_retention.42"; gene_name "CUFF.1450"; flanks "7090972-,7090344^"; structure "0,1^2-"; splice_chain ",7090972^7090344-";
chr12	juncbase	intron_retention	56579939	56578895	.	-	.	gene_id "intron_retention.43"; transcript_id "intron_retention.43"; gene_name "CUFF.1513"; flanks "56579939-,56578895^"; structure "0,1^2-"; splice_chain ",56579939^56578895-";
chr12	juncbase	jcn_only_AD	344256	332400	.	-	.	gene_id "jcn_only_AD.47"; transcript_id "jcn_only_AD.47"; gene_name ""; flanks "344256-,332400^"; structure "1^,2^"; splice_chain "344256^,333158^";
chr12	juncbase	jcn_only_AD	332912	332400	.	-	.	gene_id "jcn_only_AD.48"; transcript_id "jcn_only_AD.48"; gene_name ""; flanks "332912-,332400^"; structure "1^,2^"; splice_chain "333158^,332912^";
chr12	juncbase	alternative_acceptor	120172162	120172965	.	-	.	gene_id "alternative_acceptor.25"; transcript_id "alternative_acceptor.25"; gene_name "CUFF.1544"; flanks "120172162-,120172965^"; structure "1-,2-"; splice_chain "120172211-,120172162-";
chr12	juncbase	cassette	25706003	25702480	.	-	.	gene_id "cassette.34"; transcript_id "cassette.34"; gene_name "CUFF.1467"; flanks "25706003-,25702480^"; structure "0,1-2^"; splice_chain ",25705923-25705805^";
chr12	juncbase	alternative_donor	21011505	21174395	.	+	.	gene_id "alternative_donor.29"; transcript_id "alternative_donor.29"; gene_name "CUFF.1462"; flanks "21011505-,21174395^"; structure "1^,2^"; splice_chain "21011505^,21172314^";
chr12	juncbase	cassette	56567480	56566488	.	-	.	gene_id "cassette.35"; transcript_id "cassette.35"; gene_name "CUFF.1513"; flanks "56567480-,56566488^"; structure "0,1-2^"; splice_chain ",56566813-56566721^";
chr12	juncbase	cassette	56558432	56557549	.	-	.	gene_id "cassette.36"; transcript_id "cassette.36"; gene_name "CUFF.1513"; flanks "56558432-,56557549^"; structure "0,1-2^"; splice_chain ",56558152-56558087^";
chr12	juncbase	alternative_acceptor	77254193	77256956	.	-	.	gene_id "alternative_acceptor.26"; transcript_id "alternative_acceptor.26"; gene_name "CUFF.1531"; flanks "77254193-,77256956^"; structure "1-,2-"; splice_chain "77256739-,77254193-";
chr12	juncbase	jcn_only_AD	336731	335680	.	-	.	gene_id "jcn_only_AD.49"; transcript_id "jcn_only_AD.49"; gene_name "CUFF.1436"; flanks "336731-,335680^"; structure "1^,2^"; splice_chain "336731^,335819^";
chr12	juncbase	alternative_acceptor	72083484	72090216	.	+	.	gene_id "alternative_acceptor.27"; transcript_id "alternative_acceptor.27"; gene_name "CUFF.1444,CUFF.1528"; flanks "72083484-,72090216^"; structure "1-,2-"; splice_chain "72084119-,72090216-";
chr12	juncbase	alternative_acceptor	22671071	22676360	.	-	.	gene_id "alternative_acceptor.28"; transcript_id "alternative_acceptor.28"; gene_name "CUFF.1466"; flanks "22671071-,22676360^"; structure "1-,2-"; splice_chain "22671071-,22666324-";
chr12	juncbase	alternative_acceptor	22672173	22676360	.	-	.	gene_id "alternative_acceptor.29"; transcript_id "alternative_acceptor.29"; gene_name "CUFF.1466"; flanks "22672173-,22676360^"; structure "1-,2-"; splice_chain "22672173-,22666324-";
chr12	juncbase	cassette	4653077	4657258	.	+	.	gene_id "cassette.37"; transcript_id "cassette.37"; gene_name "CUFF.1443"; flanks "4653077-,4657258^"; structure "0,1-2^"; splice_chain ",4655475-4655584^";
chr12	juncbase	cassette	4653070	4657258	.	+	.	gene_id "cassette.38"; transcript_id "cassette.38"; gene_name "CUFF.1443"; flanks "4653070-,4657258^"; structure "0,1-2^"; splice_chain ",4655475-4655584^";
chr12	juncbase	cassette	12765121	12788711	.	+	.	gene_id "cassette.39"; transcript_id "cassette.39"; gene_name "CUFF.1454"; flanks "12765121-,12788711^"; structure "0,1-2^"; splice_chain ",12785423-12785525^";
chr12	juncbase	cassette	53856351	53859716	.	+	.	gene_id "cassette.40"; transcript_id "cassette.40"; gene_name "CUFF.1500"; flanks "53856351-,53859716^"; structure "0,1-2^"; splice_chain ",53858544-53858636^";
chr12	juncbase	cassette	53856351	53861005	.	+	.	gene_id "cassette.41"; transcript_id "cassette.41"; gene_name "CUFF.1500"; flanks "53856351-,53861005^"; structure "0,1-2^"; splice_chain ",53858544-53858636^";
chr12	juncbase	cassette	25801428	25699488	.	-	.	gene_id "cassette.42"; transcript_id "cassette.42"; gene_name "CUFF.1467"; flanks "25801428-,25699488^"; structure "0,1-2^"; splice_chain ",25702480-25702260^";
chr12	juncbase	jcn_only_AA	49335360	49351093	.	-	.	gene_id "jcn_only_AA.50"; transcript_id "jcn_only_AA.50"; gene_name "CUFF.1485"; flanks "49335360-,49351093^"; structure "1-,2-"; splice_chain "49350318-,49335360-";
chr12	juncbase	jcn_only_AA	49332630	49351093	.	-	.	gene_id "jcn_only_AA.51"; transcript_id "jcn_only_AA.51"; gene_name "CUFF.1485"; flanks "49332630-,49351093^"; structure "1-,2-"; splice_chain "49350318-,49332630-";
chr12	juncbase	jcn_only_AA	49349980	49351093	.	-	.	gene_id "jcn_only_AA.52"; transcript_id "jcn_only_AA.52"; gene_name "CUFF.1485"; flanks "49349980-,49351093^"; structure "1-,2-"; splice_chain "49350318-,49349980-";
chr12	juncbase	jcn_only_AA	113596914	113599075	.	-	.	gene_id "jcn_only_AA.53"; transcript_id "jcn_only_AA.53"; gene_name "CUFF.1541"; flanks "113596914-,113599075^"; structure "1-,2-"; splice_chain "113596917-,113596914-";
chr12	juncbase	jcn_only_AA	72083484	72090216	.	+	.	gene_id "jcn_only_AA.54"; transcript_id "jcn_only_AA.54"; gene_name "CUFF.1444,CUFF.1528"; flanks "72083484-,72090216^"; structure "1-,2-"; splice_chain "72084119-,72090216-";
chr12	juncbase	jcn_only_AD	4658002	4662149	.	+	.	gene_id "jcn_only_AD.50"; transcript_id "jcn_only_AD.50"; gene_name "CUFF.1443"; flanks "4658002-,4662149^"; structure "1^,2^"; splice_chain "4658002^,4659713^";
chr12	juncbase	jcn_only_AA	48293741	48298738	.	-	.	gene_id "jcn_only_AA.55"; transcript_id "jcn_only_AA.55"; gene_name "CUFF.1477"; flanks "48293741-,48298738^"; structure "1-,2-"; splice_chain "48293741-,48272898-";
chr12	juncbase	jcn_only_AA	48276557	48298738	.	-	.	gene_id "jcn_only_AA.56"; transcript_id "jcn_only_AA.56"; gene_name "CUFF.1477"; flanks "48276557-,48298738^"; structure "1-,2-"; splice_chain "48276557-,48272898-";
chr12	juncbase	jcn_only_AD	66187083	66451371	.	+	.	gene_id "jcn_only_AD.51"; transcript_id "jcn_only_AD.51"; gene_name ""; flanks "66187083-,66451371^"; structure "1^,2^"; splice_chain "66187083^,66232791^";
chr12	juncbase	jcn_only_AA	26205535	26208212	.	+	.	gene_id "jcn_only_AA.57"; transcript_id "jcn_only_AA.57"; gene_name ""; flanks "26205535-,26208212^"; structure "1-,2-"; splice_chain "26208169-,26208212-";
chr12	juncbase	cassette	56709605	56708750	.	-	.	gene_id "cassette.43"; transcript_id "cassette.43"; gene_name "CUFF.1515"; flanks "56709605-,56708750^"; structure "0,1-2^"; splice_chain ",56709026-56708914^";
chr12	juncbase	alternative_acceptor	53861627	53862564	.	+	.	gene_id "alternative_acceptor.30"; transcript_id "alternative_acceptor.30"; gene_name "CUFF.1437"; flanks "53861627-,53862564^"; structure "1-,2-"; splice_chain "53862561-,53862564-";
chr12	juncbase	intron_retention	56709691	56709026	.	-	.	gene_id "intron_retention.44"; transcript_id "intron_retention.44"; gene_name ""; flanks "56709691-,56709026^"; structure "0,1^2-"; splice_chain ",56709691^56709026-";
chr12	juncbase	jcn_only_AA	120172162	120172965	.	-	.	gene_id "jcn_only_AA.58"; transcript_id "jcn_only_AA.58"; gene_name "CUFF.1544"; flanks "120172162-,120172965^"; structure "1-,2-"; splice_chain "120172211-,120172162-";
chr12	juncbase	intron_retention	120221712	120220441	.	-	.	gene_id "intron_retention.45"; transcript_id "intron_retention.45"; gene_name "CUFF.1544"; flanks "120221712-,120220441^"; structure "0,1^2-"; splice_chain ",120221712^120220441-";
chr12	juncbase	cassette	4662313	4668023	.	+	.	gene_id "cassette.44"; transcript_id "cassette.44"; gene_name "CUFF.1443"; flanks "4662313-,4668023^"; structure "0,1-2^"; splice_chain ",4665519-4665668^";
chr12	juncbase	alternative_donor	53473095	53471045	.	-	.	gene_id "alternative_donor.30"; transcript_id "alternative_donor.30"; gene_name "CUFF.1495"; flanks "53473095-,53471045^"; structure "1^,2^"; splice_chain "53473095^,53471845^";
chr12	juncbase	jcn_only_AA	53853187	53854115	.	+	.	gene_id "jcn_only_AA.59"; transcript_id "jcn_only_AA.59"; gene_name "CUFF.1500"; flanks "53853187-,53854115^"; structure "1-,2-"; splice_chain "53854115-,53854799-";
chr12	juncbase	jcn_only_AA	53853187	53853584	.	+	.	gene_id "jcn_only_AA.60"; transcript_id "jcn_only_AA.60"; gene_name "CUFF.1500"; flanks "53853187-,53853584^"; structure "1-,2-"; splice_chain "53853584-,53854799-";
chr12	juncbase	cassette	69207408	69222551	.	+	.	gene_id "cassette.45"; transcript_id "cassette.45"; gene_name "CUFF.1521"; flanks "69207408-,69222551^"; structure "0,1-2^"; splice_chain ",69218143-69218210^";
chr12	juncbase	cassette	69214154	69222551	.	+	.	gene_id "cassette.46"; transcript_id "cassette.46"; gene_name "CUFF.1521"; flanks "69214154-,69222551^"; structure "0,1-2^"; splice_chain ",69218143-69218210^";
chr12	juncbase	intron_retention	69236304	69237544	.	+	.	gene_id "intron_retention.46"; transcript_id "intron_retention.46"; gene_name ""; flanks "69236304-,69237544^"; structure "0,1^2-"; splice_chain ",69236304^69237544-";
chr12	juncbase	jcn_only_AD	58014836	58015046	.	+	.	gene_id "jcn_only_AD.52"; transcript_id "jcn_only_AD.52"; gene_name "CUFF.1518"; flanks "58014836-,58015046^"; structure "1^,2^"; splice_chain "58014836^,58014875^";
chr12	juncbase	alternative_acceptor	113646064	113658802	.	-	.	gene_id "alternative_acceptor.31"; transcript_id "alternative_acceptor.31"; gene_name "CUFF.1542"; flanks "113646064-,113658802^"; structure "1-,2-"; splice_chain "113646314-,113646064-";
chr12	juncbase	jcn_only_AD	102809482	102796344	.	-	.	gene_id "jcn_only_AD.53"; transcript_id "jcn_only_AD.53"; gene_name "CUFF.1532"; flanks "102809482-,102796344^"; structure "1^,2^"; splice_chain "102813287^,102809482^";
chr12	juncbase	jcn_only_AD	102811733	102796344	.	-	.	gene_id "jcn_only_AD.54"; transcript_id "jcn_only_AD.54"; gene_name "CUFF.1532"; flanks "102811733-,102796344^"; structure "1^,2^"; splice_chain "102813287^,102811733^";
chr12	juncbase	jcn_only_AA	347176	369017	.	-	.	gene_id "jcn_only_AA.61"; transcript_id "jcn_only_AA.61"; gene_name "CUFF.1436"; flanks "347176-,369017^"; structure "1-,2-"; splice_chain "352979-,347176-";
chr12	juncbase	alternative_donor	22676360	22671071	.	-	.	gene_id "alternative_donor.31"; transcript_id "alternative_donor.31"; gene_name "CUFF.1466"; flanks "22676360-,22671071^"; structure "1^,2^"; splice_chain "22676360^,22671974^";
chr12	juncbase	jcn_only_AA	57853984	57858456	.	+	.	gene_id "jcn_only_AA.62"; transcript_id "jcn_only_AA.62"; gene_name "CUFF.1516"; flanks "57853984-,57858456^"; structure "1-,2-"; splice_chain "57857448-,57858456-";
chr12	juncbase	jcn_only_AA	56705179	56708635	.	-	.	gene_id "jcn_only_AA.63"; transcript_id "jcn_only_AA.63"; gene_name ""; flanks "56705179-,56708635^"; structure "1-,2-"; splice_chain "56706669-,56705179-";
chr12	juncbase	jcn_only_AA	56705237	56708635	.	-	.	gene_id "jcn_only_AA.64"; transcript_id "jcn_only_AA.64"; gene_name ""; flanks "56705237-,56708635^"; structure "1-,2-"; splice_chain "56706669-,56705237-";
chr12	juncbase	jcn_only_AA	56705198	56708635	.	-	.	gene_id "jcn_only_AA.65"; transcript_id "jcn_only_AA.65"; gene_name ""; flanks "56705198-,56708635^"; structure "1-,2-"; splice_chain "56706669-,56705198-";
chr12	juncbase	alternative_acceptor	133181417	133182733	.	-	.	gene_id "alternative_acceptor.32"; transcript_id "alternative_acceptor.32"; gene_name "CUFF.1547"; flanks "133181417-,133182733^"; structure "1-,2-"; splice_chain "133181604-,133181417-";
chr12	juncbase	alternative_acceptor	113596914	113599075	.	-	.	gene_id "alternative_acceptor.33"; transcript_id "alternative_acceptor.33"; gene_name "CUFF.1541"; flanks "113596914-,113599075^"; structure "1-,2-"; splice_chain "113596917-,113596914-";
chr12	juncbase	intron_retention	58013661	58014125	.	+	.	gene_id "intron_retention.47"; transcript_id "intron_retention.47"; gene_name "CUFF.1518"; flanks "58013661-,58014125^"; structure "0,1^2-"; splice_chain ",58013661^58014125-";
chr12	juncbase	cassette	53848653	53849245	.	+	.	gene_id "cassette.47"; transcript_id "cassette.47"; gene_name "CUFF.1500"; flanks "53848653-,53849245^"; structure "0,1-2^"; splice_chain ",53849131-53849154^";
chr12	juncbase	intron_retention	22697254	22697113	.	-	.	gene_id "intron_retention.48"; transcript_id "intron_retention.48"; gene_name "CUFF.1466"; flanks "22697254-,22697113^"; structure "0,1^2-"; splice_chain ",22697254^22697113-";
chr12	juncbase	cassette	58017881	58018649	.	+	.	gene_id "cassette.48"; transcript_id "cassette.48"; gene_name "CUFF.1518"; flanks "58017881-,58018649^"; structure "0,1-2^"; splice_chain ",58018283-58018389^";
chr12	juncbase	intron_retention	53459486	53459058	.	-	.	gene_id "intron_retention.49"; transcript_id "intron_retention.49"; gene_name "CUFF.1495"; flanks "53459486-,53459058^"; structure "0,1^2-"; splice_chain ",53459486^53459058-";
chr12	juncbase	jcn_only_AA	56705179	56708635	.	-	.	gene_id "jcn_only_AA.66"; transcript_id "jcn_only_AA.66"; gene_name ""; flanks "56705179-,56708635^"; structure "1-,2-"; splice_chain "56705237-,56705179-";
chr12	juncbase	jcn_only_AA	56706669	56708635	.	-	.	gene_id "jcn_only_AA.67"; transcript_id "jcn_only_AA.67"; gene_name ""; flanks "56706669-,56708635^"; structure "1-,2-"; splice_chain "56706669-,56705237-";
chr12	juncbase	jcn_only_AA	56705198	56708635	.	-	.	gene_id "jcn_only_AA.68"; transcript_id "jcn_only_AA.68"; gene_name ""; flanks "56705198-,56708635^"; structure "1-,2-"; splice_chain "56705237-,56705198-";
chr12	juncbase	intron_retention	69237612	69237714	.	+	.	gene_id "intron_retention.50"; transcript_id "intron_retention.50"; gene_name ""; flanks "69237612-,69237714^"; structure "0,1^2-"; splice_chain ",69237612^69237714-";
chr12	juncbase	cassette	22659645	22643152	.	-	.	gene_id "cassette.49"; transcript_id "cassette.49"; gene_name "CUFF.1466"; flanks "22659645-,22643152^"; structure "0,1-2^"; splice_chain ",22646271-22646157^";
chr12	juncbase	jcn_only_AD	21011505	21174395	.	+	.	gene_id "jcn_only_AD.55"; transcript_id "jcn_only_AD.55"; gene_name "CUFF.1462"; flanks "21011505-,21174395^"; structure "1^,2^"; splice_chain "21011505^,21172314^";
chr12	juncbase	jcn_only_AD	4653070	4654385	.	+	.	gene_id "jcn_only_AD.56"; transcript_id "jcn_only_AD.56"; gene_name ""; flanks "4653070-,4654385^"; structure "1^,2^"; splice_chain "4653070^,4653077^";
chr12	juncbase	jcn_only_AD	48383011	48381492	.	-	.	gene_id "jcn_only_AD.57"; transcript_id "jcn_only_AD.57"; gene_name "CUFF.1480"; flanks "48383011-,48381492^"; structure "1^,2^"; splice_chain "48383011^,48382209^";
chr12	juncbase	intron_retention	13364474	13367970	.	+	.	gene_id "intron_retention.51"; transcript_id "intron_retention.51"; gene_name "CUFF.1455"; flanks "13364474-,13367970^"; structure "0,1^2-"; splice_chain ",13364474^13367970-";
chr12	juncbase	alternative_acceptor	21220317	21229386	.	+	.	gene_id "alternative_acceptor.34"; transcript_id "alternative_acceptor.34"; gene_name "CUFF.1462"; flanks "21220317-,21229386^"; structure "1-,2-"; splice_chain "21228194-,21229386-";
chr12	juncbase	intron_retention	133182733	133181417	.	-	.	gene_id "intron_retention.52"; transcript_id "intron_retention.52"; gene_name "CUFF.1547"; flanks "133182733-,133181417^"; structure "0,1^2-"; splice_chain ",133182733^133181417-";
chr12	juncbase	intron_retention	53861627	53862564	.	+	.	gene_id "intron_retention.53"; transcript_id "intron_retention.53"; gene_name ""; flanks "53861627-,53862564^"; structure "0,1^2-"; splice_chain ",53861627^53862564-";
chr12	juncbase	intron_retention	56708635	56705179	.	-	.	gene_id "intron_retention.54"; transcript_id "intron_retention.54"; gene_name ""; flanks "56708635-,56705179^"; structure "0,1^2-"; splice_chain ",56708635^56705179-";
chr12	juncbase	jcn_only_AD	26112081	26147970	.	+	.	gene_id "jcn_only_AD.58"; transcript_id "jcn_only_AD.58"; gene_name "CUFF.1469"; flanks "26112081-,26147970^"; structure "1^,2^"; splice_chain "26112081^,26126820^";
chr12	juncbase	intron_retention	4662313	4665597	.	+	.	gene_id "intron_retention.55"; transcript_id "intron_retention.55"; gene_name "CUFF.1443"; flanks "4662313-,4665597^"; structure "0,1^2-"; splice_chain ",4662313^4665597-";
chr12	juncbase	intron_retention	52404991	52407471	.	+	.	gene_id "intron_retention.56"; transcript_id "intron_retention.56"; gene_name "CUFF.1491"; flanks "52404991-,52407471^"; structure "0,1^2-"; splice_chain ",52404991^52407471-";
chr12	juncbase	alternative_acceptor	53853187	53854799	.	+	.	gene_id "alternative_acceptor.35"; transcript_id "alternative_acceptor.35"; gene_name "CUFF.1500"; flanks "53853187-,53854799^"; structure "1-,2-"; splice_chain "53854115-,53854799-";
chr12	juncbase	alternative_acceptor	53853187	53853584	.	+	.	gene_id "alternative_acceptor.36"; transcript_id "alternative_acceptor.36"; gene_name "CUFF.1500"; flanks "53853187-,53853584^"; structure "1-,2-"; splice_chain "53853584-,53854115-";
chr12	juncbase	cassette	113603449	113601079	.	-	.	gene_id "cassette.50"; transcript_id "cassette.50"; gene_name "CUFF.1541"; flanks "113603449-,113601079^"; structure "0,1-2^"; splice_chain ",113602090-113601872^";
chr12	juncbase	cassette	52994811	52992896	.	-	.	gene_id "cassette.51"; transcript_id "cassette.51"; gene_name "CUFF.1493"; flanks "52994811-,52992896^"; structure "0,1-2^"; splice_chain ",52993086-52993055^";
chr12	juncbase	jcn_only_AA	26148063	26208212	.	+	.	gene_id "jcn_only_AA.69"; transcript_id "jcn_only_AA.69"; gene_name ""; flanks "26148063-,26208212^"; structure "1-,2-"; splice_chain "26208169-,26208212-";
chr12	juncbase	intron_retention	58019247	58019408	.	+	.	gene_id "intron_retention.57"; transcript_id "intron_retention.57"; gene_name "CUFF.1518"; flanks "58019247-,58019408^"; structure "0,1^2-"; splice_chain ",58019247^58019408-";
chr12	juncbase	alternative_donor	72083484	72090216	.	+	.	gene_id "alternative_donor.32"; transcript_id "alternative_donor.32"; gene_name "CUFF.1528"; flanks "72083484-,72090216^"; structure "1^,2^"; splice_chain "72083484^,72084210^";
chr12	juncbase	intron_retention	7086760	7086687	.	-	.	gene_id "intron_retention.58"; transcript_id "intron_retention.58"; gene_name ""; flanks "7086760-,7086687^"; structure "0,1^2-"; splice_chain ",7086760^7086687-";
chr12	juncbase	jcn_only_AA	351920	352845	.	-	.	gene_id "jcn_only_AA.70"; transcript_id "jcn_only_AA.70"; gene_name ""; flanks "351920-,352845^"; structure "1-,2-"; splice_chain "351931-,351920-";
chr12	juncbase	alternative_donor	4653070	4654948	.	+	.	gene_id "alternative_donor.33"; transcript_id "alternative_donor.33"; gene_name "CUFF.1443"; flanks "4653070-,4654948^"; structure "1^,2^"; splice_chain "4653070^,4654478^";
chr12	juncbase	cassette	69207408	69233054	.	+	.	gene_id "cassette.52"; transcript_id "cassette.52"; gene_name "CUFF.1521"; flanks "69207408-,69233054^"; structure "0,1-2^"; splice_chain ",69222551-69222711^";
chr12	juncbase	cassette	69214154	69233054	.	+	.	gene_id "cassette.53"; transcript_id "cassette.53"; gene_name "CUFF.1521"; flanks "69214154-,69233054^"; structure "0,1-2^"; splice_chain ",69222551-69222711^";
chr12	juncbase	cassette	69207408	69229609	.	+	.	gene_id "cassette.54"; transcript_id "cassette.54"; gene_name "CUFF.1521"; flanks "69207408-,69229609^"; structure "0,1-2^"; splice_chain ",69222551-69222711^";
chr12	juncbase	cassette	69218431	69233054	.	+	.	gene_id "cassette.55"; transcript_id "cassette.55"; gene_name "CUFF.1521"; flanks "69218431-,69233054^"; structure "0,1-2^"; splice_chain ",69222551-69222711^";
chr12	juncbase	cassette	69218431	69229609	.	+	.	gene_id "cassette.56"; transcript_id "cassette.56"; gene_name "CUFF.1521"; flanks "69218431-,69229609^"; structure "0,1-2^"; splice_chain ",69222551-69222711^";
chr12	juncbase	cassette	69207408	69233054	.	+	.	gene_id "cassette.57"; transcript_id "cassette.57"; gene_name "CUFF.1521"; flanks "69207408-,69233054^"; structure "0,1-2^"; splice_chain ",69229609-69229764^";
chr12	juncbase	cassette	69222711	69233054	.	+	.	gene_id "cassette.58"; transcript_id "cassette.58"; gene_name "CUFF.1521"; flanks "69222711-,69233054^"; structure "0,1-2^"; splice_chain ",69229609-69229764^";
chr12	juncbase	cassette	69203072	69233054	.	+	.	gene_id "cassette.59"; transcript_id "cassette.59"; gene_name "CUFF.1521"; flanks "69203072-,69233054^"; structure "0,1-2^"; splice_chain ",69229609-69229764^";
chr12	juncbase	cassette	69218431	69233054	.	+	.	gene_id "cassette.60"; transcript_id "cassette.60"; gene_name "CUFF.1521"; flanks "69218431-,69233054^"; structure "0,1-2^"; splice_chain ",69229609-69229764^";
chr12	juncbase	intron_retention	56578814	56578720	.	-	.	gene_id "intron_retention.59"; transcript_id "intron_retention.59"; gene_name "CUFF.1513"; flanks "56578814-,56578720^"; structure "0,1^2-"; splice_chain ",56578814^56578720-";
chr12	juncbase	alternative_acceptor	49335360	49351093	.	-	.	gene_id "alternative_acceptor.37"; transcript_id "alternative_acceptor.37"; gene_name "CUFF.1485"; flanks "49335360-,49351093^"; structure "1-,2-"; splice_chain "49350318-,49335360-";
chr12	juncbase	alternative_acceptor	49332630	49351093	.	-	.	gene_id "alternative_acceptor.38"; transcript_id "alternative_acceptor.38"; gene_name "CUFF.1485"; flanks "49332630-,49351093^"; structure "1-,2-"; splice_chain "49350318-,49332630-";
chr12	juncbase	alternative_acceptor	49349980	49351093	.	-	.	gene_id "alternative_acceptor.39"; transcript_id "alternative_acceptor.39"; gene_name "CUFF.1485"; flanks "49349980-,49351093^"; structure "1-,2-"; splice_chain "49350318-,49349980-";
chr12	juncbase	alternative_donor	7087583	7086687	.	-	.	gene_id "alternative_donor.34"; transcript_id "alternative_donor.34"; gene_name ""; flanks "7087583-,7086687^"; structure "1^,2^"; splice_chain "7087583^,7086760^";
chr12	juncbase	jcn_only_AA	133181417	133182733	.	-	.	gene_id "jcn_only_AA.71"; transcript_id "jcn_only_AA.71"; gene_name "CUFF.1547"; flanks "133181417-,133182733^"; structure "1-,2-"; splice_chain "133181604-,133181417-";
chr12	juncbase	jcn_only_AD	4430469	4440446	.	+	.	gene_id "jcn_only_AD.59"; transcript_id "jcn_only_AD.59"; gene_name "CUFF.1444"; flanks "4430469-,4440446^"; structure "1^,2^"; splice_chain "4430469^,4433929^";
chr12	juncbase	intron_retention	50357439	50357875	.	+	.	gene_id "intron_retention.60"; transcript_id "intron_retention.60"; gene_name "CUFF.1488"; flanks "50357439-,50357875^"; structure "0,1^2-"; splice_chain ",50357439^50357875-";
chr12	juncbase	alternative_acceptor	332400	333158	.	-	.	gene_id "alternative_acceptor.40"; transcript_id "alternative_acceptor.40"; gene_name "CUFF.1436"; flanks "332400-,333158^"; structure "1-,2-"; splice_chain "333011-,332400-";
chr12	juncbase	intron_retention	22672049	22666313	.	-	.	gene_id "intron_retention.61"; transcript_id "intron_retention.61"; gene_name ""; flanks "22672049-,22666313^"; structure "0,1^2-"; splice_chain ",22672049^22666313-";
chr12	juncbase	intron_retention	69210618	69233542	.	+	.	gene_id "intron_retention.62"; transcript_id "intron_retention.62"; gene_name ""; flanks "69210618-,69233542^"; structure "0,1^2-"; splice_chain ",69210618^69233542-";
chr12	juncbase	alternative_donor	120222764	120221855	.	-	.	gene_id "alternative_donor.35"; transcript_id "alternative_donor.35"; gene_name "CUFF.1544"; flanks "120222764-,120221855^"; structure "1^,2^"; splice_chain "120222764^,120221993^";
chr12	juncbase	jcn_only_AD	4653070	4654948	.	+	.	gene_id "jcn_only_AD.60"; transcript_id "jcn_only_AD.60"; gene_name "CUFF.1443"; flanks "4653070-,4654948^"; structure "1^,2^"; splice_chain "4653070^,4654478^";
chr12	juncbase	alternative_donor	48375890	48375612	.	-	.	gene_id "alternative_donor.36"; transcript_id "alternative_donor.36"; gene_name "CUFF.1480"; flanks "48375890-,48375612^"; structure "1^,2^"; splice_chain "48375890^,48375728^";
chr12	juncbase	intron_retention	52979747	52979619	.	-	.	gene_id "intron_retention.63"; transcript_id "intron_retention.63"; gene_name "CUFF.1493"; flanks "52979747-,52979619^"; structure "0,1^2-"; splice_chain ",52979747^52979619-";
chr12	juncbase	intron_retention	53861627	53862561	.	+	.	gene_id "intron_retention.64"; transcript_id "intron_retention.64"; gene_name ""; flanks "53861627-,53862561^"; structure "0,1^2-"; splice_chain ",53861627^53862561-";
chr12	juncbase	alternative_acceptor	58019247	58019408	.	+	.	gene_id "alternative_acceptor.41"; transcript_id "alternative_acceptor.41"; gene_name "CUFF.1518"; flanks "58019247-,58019408^"; structure "1-,2-"; splice_chain "58019365-,58019408-";
chr12	juncbase	jcn_only_AD	120222764	120221855	.	-	.	gene_id "jcn_only_AD.61"; transcript_id "jcn_only_AD.61"; gene_name "CUFF.1544"; flanks "120222764-,120221855^"; structure "1^,2^"; splice_chain "120222764^,120221993^";
chr12	juncbase	alternative_acceptor	22671071	22676360	.	-	.	gene_id "alternative_acceptor.42"; transcript_id "alternative_acceptor.42"; gene_name "CUFF.1466"; flanks "22671071-,22676360^"; structure "1-,2-"; splice_chain "22672173-,22671071-";
chr12	juncbase	alternative_acceptor	22666324	22676360	.	-	.	gene_id "alternative_acceptor.43"; transcript_id "alternative_acceptor.43"; gene_name "CUFF.1466"; flanks "22666324-,22676360^"; structure "1-,2-"; splice_chain "22672173-,22666324-";
chr12	juncbase	jcn_only_AD	72083484	72090216	.	+	.	gene_id "jcn_only_AD.62"; transcript_id "jcn_only_AD.62"; gene_name "CUFF.1528"; flanks "72083484-,72090216^"; structure "1^,2^"; splice_chain "72083484^,72084210^";
chr12	juncbase	cassette	58018389	58018649	.	+	.	gene_id "cassette.61"; transcript_id "cassette.61"; gene_name "CUFF.1518"; flanks "58018389-,58018649^"; structure "0,1-2^"; splice_chain ",58018507-58018576^";
chr12	juncbase	intron_retention	77256956	77254193	.	-	.	gene_id "intron_retention.65"; transcript_id "intron_retention.65"; gene_name "CUFF.1531"; flanks "77256956-,77254193^"; structure "0,1^2-"; splice_chain ",77256956^77254193-";
chr12	juncbase	alternative_acceptor	347176	351780	.	-	.	gene_id "alternative_acceptor.44"; transcript_id "alternative_acceptor.44"; gene_name ""; flanks "347176-,351780^"; structure "1-,2-"; splice_chain "347509-,347176-";
chr12	juncbase	intron_retention	26221856	26224589	.	+	.	gene_id "intron_retention.66"; transcript_id "intron_retention.66"; gene_name ""; flanks "26221856-,26224589^"; structure "0,1^2-"; splice_chain ",26221856^26224589-";
chr12	juncbase	alternative_donor	58019470	58019781	.	+	.	gene_id "alternative_donor.37"; transcript_id "alternative_donor.37"; gene_name "CUFF.1518"; flanks "58019470-,58019781^"; structure "1^,2^"; splice_chain "58019470^,58019535^";
chr12	juncbase	alternative_donor	56709605	56709026	.	-	.	gene_id "alternative_donor.38"; transcript_id "alternative_donor.38"; gene_name "CUFF.1515"; flanks "56709605-,56709026^"; structure "1^,2^"; splice_chain "56709691^,56709605^";
chr12	juncbase	alternative_donor	56709501	56709026	.	-	.	gene_id "alternative_donor.39"; transcript_id "alternative_donor.39"; gene_name "CUFF.1515"; flanks "56709501-,56709026^"; structure "1^,2^"; splice_chain "56709691^,56709501^";
chr12	juncbase	intron_retention	53854209	53854799	.	+	.	gene_id "intron_retention.67"; transcript_id "intron_retention.67"; gene_name ""; flanks "53854209-,53854799^"; structure "0,1^2-"; splice_chain ",53854209^53854799-";
chr12	juncbase	cassette	49334731	49333562	.	-	.	gene_id "cassette.62"; transcript_id "cassette.62"; gene_name "CUFF.1485"; flanks "49334731-,49333562^"; structure "0,1-2^"; splice_chain ",49333890-49333780^";
chr12	juncbase	jcn_only_AD	333158	332400	.	-	.	gene_id "jcn_only_AD.63"; transcript_id "jcn_only_AD.63"; gene_name "CUFF.1436"; flanks "333158-,332400^"; structure "1^,2^"; splice_chain "344256^,333158^";
chr12	juncbase	jcn_only_AD	332912	332400	.	-	.	gene_id "jcn_only_AD.64"; transcript_id "jcn_only_AD.64"; gene_name "CUFF.1436"; flanks "332912-,332400^"; structure "1^,2^"; splice_chain "344256^,332912^";
chr12	juncbase	intron_retention	3432618	3434256	.	+	.	gene_id "intron_retention.68"; transcript_id "intron_retention.68"; gene_name "CUFF.1441"; flanks "3432618-,3434256^"; structure "0,1^2-"; splice_chain ",3432618^3434256-";
chr12	juncbase	jcn_only_AD	52404925	52407471	.	+	.	gene_id "jcn_only_AD.65"; transcript_id "jcn_only_AD.65"; gene_name "CUFF.1491"; flanks "52404925-,52407471^"; structure "1^,2^"; splice_chain "52404925^,52404991^";
chr12	juncbase	jcn_only_AA	13366755	13367505	.	+	.	gene_id "jcn_only_AA.72"; transcript_id "jcn_only_AA.72"; gene_name "CUFF.1455"; flanks "13366755-,13367505^"; structure "1-,2-"; splice_chain "13367468-,13367505-";
chr12	juncbase	alternative_donor	22672049	22666313	.	-	.	gene_id "alternative_donor.40"; transcript_id "alternative_donor.40"; gene_name ""; flanks "22672049-,22666313^"; structure "1^,2^"; splice_chain "22672049^,22670920^";
chr12	juncbase	intron_retention	69218348	69233555	.	+	.	gene_id "intron_retention.69"; transcript_id "intron_retention.69"; gene_name ""; flanks "69218348-,69233555^"; structure "0,1^2-"; splice_chain ",69218348^69233555-";
chr12	juncbase	jcn_only_AD	48375890	48375612	.	-	.	gene_id "jcn_only_AD.66"; transcript_id "jcn_only_AD.66"; gene_name "CUFF.1480"; flanks "48375890-,48375612^"; structure "1^,2^"; splice_chain "48375890^,48375728^";
chr12	juncbase	jcn_only_AA	347176	351780	.	-	.	gene_id "jcn_only_AA.73"; transcript_id "jcn_only_AA.73"; gene_name ""; flanks "347176-,351780^"; structure "1-,2-"; splice_chain "347509-,347176-";
chr12	juncbase	jcn_only_AA	57857574	57858486	.	+	.	gene_id "jcn_only_AA.74"; transcript_id "jcn_only_AA.74"; gene_name "CUFF.1469,CUFF.1516"; flanks "57857574-,57858486^"; structure "1-,2-"; splice_chain "57857782-,57858486-";
chr12	juncbase	intron_retention	77259929	77257124	.	-	.	gene_id "intron_retention.70"; transcript_id "intron_retention.70"; gene_name "CUFF.1531"; flanks "77259929-,77257124^"; structure "0,1^2-"; splice_chain ",77259929^77257124-";
chr12	juncbase	intron_retention	53861077	53862561	.	+	.	gene_id "intron_retention.71"; transcript_id "intron_retention.71"; gene_name ""; flanks "53861077-,53862561^"; structure "0,1^2-"; splice_chain ",53861077^53862561-";
chr12	juncbase	alternative_donor	26112081	26147970	.	+	.	gene_id "alternative_donor.41"; transcript_id "alternative_donor.41"; gene_name "CUFF.1469"; flanks "26112081-,26147970^"; structure "1^,2^"; splice_chain "26112081^,26126820^";
chr12	juncbase	alternative_donor	120149983	120148425	.	-	.	gene_id "alternative_donor.42"; transcript_id "alternative_donor.42"; gene_name "CUFF.1544"; flanks "120149983-,120148425^"; structure "1^,2^"; splice_chain "120149983^,120148854^";
chr12	juncbase	jcn_only_AA	21220317	21229386	.	+	.	gene_id "jcn_only_AA.75"; transcript_id "jcn_only_AA.75"; gene_name "CUFF.1462"; flanks "21220317-,21229386^"; structure "1-,2-"; splice_chain "21228194-,21229386-";
chr12	juncbase	jcn_only_AD	113623083	113618863	.	-	.	gene_id "jcn_only_AD.67"; transcript_id "jcn_only_AD.67"; gene_name "CUFF.1541"; flanks "113623083-,113618863^"; structure "1^,2^"; splice_chain "113623083^,113621528^";
chr12	juncbase	cassette	53861077	53862561	.	+	.	gene_id "cassette.63"; transcript_id "cassette.63"; gene_name "CUFF.1500"; flanks "53861077-,53862561^"; structure "0,1-2^"; splice_chain ",53861589-53861627^";
chr12	juncbase	intron_retention	58019535	58019781	.	+	.	gene_id "intron_retention.72"; transcript_id "intron_retention.72"; gene_name "CUFF.1518"; flanks "58019535-,58019781^"; structure "0,1^2-"; splice_chain ",58019535^58019781-";
chr12	juncbase	alternative_donor	50236637	50232798	.	-	.	gene_id "alternative_donor.43"; transcript_id "alternative_donor.43"; gene_name "CUFF.1487"; flanks "50236637-,50232798^"; structure "1^,2^"; splice_chain "50236637^,50236169^";
chr12	juncbase	jcn_only_AA	53471045	53473095	.	-	.	gene_id "jcn_only_AA.76"; transcript_id "jcn_only_AA.76"; gene_name "CUFF.1495"; flanks "53471045-,53473095^"; structure "1-,2-"; splice_chain "53471955-,53471045-";
chr12	juncbase	jcn_only_AD	102811733	102796344	.	-	.	gene_id "jcn_only_AD.68"; transcript_id "jcn_only_AD.68"; gene_name "CUFF.1532"; flanks "102811733-,102796344^"; structure "1^,2^"; splice_chain "102811733^,102809482^";
chr12	juncbase	jcn_only_AD	102813287	102796344	.	-	.	gene_id "jcn_only_AD.69"; transcript_id "jcn_only_AD.69"; gene_name "CUFF.1532"; flanks "102813287-,102796344^"; structure "1^,2^"; splice_chain "102813287^,102809482^";
chr12	juncbase	alternative_acceptor	49335360	49351093	.	-	.	gene_id "alternative_acceptor.45"; transcript_id "alternative_acceptor.45"; gene_name "CUFF.1485"; flanks "49335360-,49351093^"; structure "1-,2-"; splice_chain "49349980-,49335360-";
chr12	juncbase	alternative_acceptor	49332630	49351093	.	-	.	gene_id "alternative_acceptor.46"; transcript_id "alternative_acceptor.46"; gene_name "CUFF.1485"; flanks "49332630-,49351093^"; structure "1-,2-"; splice_chain "49349980-,49332630-";
chr12	juncbase	alternative_acceptor	49350318	49351093	.	-	.	gene_id "alternative_acceptor.47"; transcript_id "alternative_acceptor.47"; gene_name "CUFF.1485"; flanks "49350318-,49351093^"; structure "1-,2-"; splice_chain "49350318-,49349980-";
chr12	juncbase	jcn_only_AA	22671071	22676360	.	-	.	gene_id "jcn_only_AA.77"; transcript_id "jcn_only_AA.77"; gene_name "CUFF.1466"; flanks "22671071-,22676360^"; structure "1-,2-"; splice_chain "22672173-,22671071-";
chr12	juncbase	jcn_only_AA	22666324	22676360	.	-	.	gene_id "jcn_only_AA.78"; transcript_id "jcn_only_AA.78"; gene_name "CUFF.1466"; flanks "22666324-,22676360^"; structure "1-,2-"; splice_chain "22672173-,22666324-";
chr12	juncbase	jcn_only_AA	53861627	53862564	.	+	.	gene_id "jcn_only_AA.79"; transcript_id "jcn_only_AA.79"; gene_name "CUFF.1437"; flanks "53861627-,53862564^"; structure "1-,2-"; splice_chain "53862561-,53862564-";
chr12	juncbase	intron_retention	54758177	54757643	.	-	.	gene_id "intron_retention.73"; transcript_id "intron_retention.73"; gene_name "CUFF.1507"; flanks "54758177-,54757643^"; structure "0,1^2-"; splice_chain ",54758177^54757643-";
chr12	juncbase	intron_retention	53468879	53468568	.	-	.	gene_id "intron_retention.74"; transcript_id "intron_retention.74"; gene_name "CUFF.1495"; flanks "53468879-,53468568^"; structure "0,1^2-"; splice_chain ",53468879^53468568-";
chr12	juncbase	cassette	22622643	22610095	.	-	.	gene_id "cassette.64"; transcript_id "cassette.64"; gene_name "CUFF.1466"; flanks "22622643-,22610095^"; structure "0,1-2^"; splice_chain ",22612476-22612426^";
chr12	juncbase	alternative_donor	4658002	4662149	.	+	.	gene_id "alternative_donor.44"; transcript_id "alternative_donor.44"; gene_name "CUFF.1443"; flanks "4658002-,4662149^"; structure "1^,2^"; splice_chain "4658002^,4659713^";
chr12	juncbase	jcn_only_AA	58019247	58019408	.	+	.	gene_id "jcn_only_AA.80"; transcript_id "jcn_only_AA.80"; gene_name "CUFF.1518"; flanks "58019247-,58019408^"; structure "1-,2-"; splice_chain "58019365-,58019408-";
chr12	juncbase	alternative_donor	56709605	56709026	.	-	.	gene_id "alternative_donor.45"; transcript_id "alternative_donor.45"; gene_name "CUFF.1477,CUFF.1515"; flanks "56709605-,56709026^"; structure "1^,2^"; splice_chain "56709605^,56709501^";
chr12	juncbase	alternative_donor	56709691	56709026	.	-	.	gene_id "alternative_donor.46"; transcript_id "alternative_donor.46"; gene_name "CUFF.1477,CUFF.1515"; flanks "56709691-,56709026^"; structure "1^,2^"; splice_chain "56709691^,56709501^";
chr12	juncbase	jcn_only_AD	120287978	120158390	.	-	.	gene_id "jcn_only_AD.70"; transcript_id "jcn_only_AD.70"; gene_name ""; flanks "120287978-,120158390^"; structure "1^,2^"; splice_chain "120287978^,120159114^";
chr12	juncbase	jcn_only_AD	113600737	113599802	.	-	.	gene_id "jcn_only_AD.71"; transcript_id "jcn_only_AD.71"; gene_name "CUFF.1541"; flanks "113600737-,113599802^"; structure "1^,2^"; splice_chain "113600737^,113600701^";
chr12	juncbase	alternative_acceptor	53853187	53854115	.	+	.	gene_id "alternative_acceptor.48"; transcript_id "alternative_acceptor.48"; gene_name "CUFF.1500"; flanks "53853187-,53854115^"; structure "1-,2-"; splice_chain "53853584-,53854115-";
chr12	juncbase	alternative_acceptor	53853187	53854799	.	+	.	gene_id "alternative_acceptor.49"; transcript_id "alternative_acceptor.49"; gene_name "CUFF.1500"; flanks "53853187-,53854799^"; structure "1-,2-"; splice_chain "53853584-,53854799-";
chr12	juncbase	cassette	53858636	53861005	.	+	.	gene_id "cassette.65"; transcript_id "cassette.65"; gene_name "CUFF.1500"; flanks "53858636-,53861005^"; structure "0,1-2^"; splice_chain ",53859716-53859757^";
chr12	juncbase	cassette	53856351	53861005	.	+	.	gene_id "cassette.66"; transcript_id "cassette.66"; gene_name "CUFF.1500"; flanks "53856351-,53861005^"; structure "0,1-2^"; splice_chain ",53859716-53859757^";
chr12	juncbase	cassette	13349806	13366615	.	+	.	gene_id "cassette.67"; transcript_id "cassette.67"; gene_name "CUFF.1455"; flanks "13349806-,13366615^"; structure "0,1-2^"; splice_chain ",13366413-13366509^";
chr12	juncbase	jcn_only_AD	102809482	102796344	.	-	.	gene_id "jcn_only_AD.72"; transcript_id "jcn_only_AD.72"; gene_name ""; flanks "102809482-,102796344^"; structure "1^,2^"; splice_chain "102811733^,102809482^";
chr12	juncbase	jcn_only_AD	102813287	102796344	.	-	.	gene_id "jcn_only_AD.73"; transcript_id "jcn_only_AD.73"; gene_name ""; flanks "102813287-,102796344^"; structure "1^,2^"; splice_chain "102813287^,102811733^";
chr12	juncbase	alternative_acceptor	120128256	120135464	.	-	.	gene_id "alternative_acceptor.50"; transcript_id "alternative_acceptor.50"; gene_name "CUFF.1544"; flanks "120128256-,120135464^"; structure "1-,2-"; splice_chain "120128259-,120128256-";
chr12	juncbase	jcn_only_AD	50236637	50232798	.	-	.	gene_id "jcn_only_AD.74"; transcript_id "jcn_only_AD.74"; gene_name "CUFF.1487"; flanks "50236637-,50232798^"; structure "1^,2^"; splice_chain "50236637^,50236169^";
chr12	juncbase	cassette	53468879	53467255	.	-	.	gene_id "cassette.68"; transcript_id "cassette.68"; gene_name "CUFF.1495"; flanks "53468879-,53467255^"; structure "0,1-2^"; splice_chain ",53468568-53468433^";
chr12	juncbase	intron_retention	52404925	52407471	.	+	.	gene_id "intron_retention.75"; transcript_id "intron_retention.75"; gene_name "CUFF.1491"; flanks "52404925-,52407471^"; structure "0,1^2-"; splice_chain ",52404925^52407471-";
chr12	juncbase	alternative_acceptor	13366509	13369378	.	+	.	gene_id "alternative_acceptor.51"; transcript_id "alternative_acceptor.51"; gene_name "CUFF.1469"; flanks "13366509-,13369378^"; structure "1-,2-"; splice_chain "13366615-,13369378-";
chr12	juncbase	intron_retention	369017	347176	.	-	.	gene_id "intron_retention.76"; transcript_id "intron_retention.76"; gene_name "CUFF.1436"; flanks "369017-,347176^"; structure "0,1^2-"; splice_chain ",369017^347176-";
chr12	juncbase	jcn_only_AD	58019470	58019781	.	+	.	gene_id "jcn_only_AD.75"; transcript_id "jcn_only_AD.75"; gene_name "CUFF.1518"; flanks "58019470-,58019781^"; structure "1^,2^"; splice_chain "58019470^,58019535^";
chr12	juncbase	alternative_donor	56709691	56709026	.	-	.	gene_id "alternative_donor.47"; transcript_id "alternative_donor.47"; gene_name ""; flanks "56709691-,56709026^"; structure "1^,2^"; splice_chain "56709691^,56709605^";
chr12	juncbase	alternative_donor	56709501	56709026	.	-	.	gene_id "alternative_donor.48"; transcript_id "alternative_donor.48"; gene_name ""; flanks "56709501-,56709026^"; structure "1^,2^"; splice_chain "56709605^,56709501^";
chr12	juncbase	jcn_only_AD	21242863	21279042	.	+	.	gene_id "jcn_only_AD.76"; transcript_id "jcn_only_AD.76"; gene_name "CUFF.1462"; flanks "21242863-,21279042^"; structure "1^,2^"; splice_chain "21242863^,21272561^";
chr12	juncbase	jcn_only_AD	21229503	21279042	.	+	.	gene_id "jcn_only_AD.77"; transcript_id "jcn_only_AD.77"; gene_name "CUFF.1462"; flanks "21229503-,21279042^"; structure "1^,2^"; splice_chain "21229503^,21272561^";
chr12	juncbase	intron_retention	58017881	58018283	.	+	.	gene_id "intron_retention.77"; transcript_id "intron_retention.77"; gene_name ""; flanks "58017881-,58018283^"; structure "0,1^2-"; splice_chain ",58017881^58018283-";
chr12	juncbase	alternative_acceptor	56578876	56579939	.	-	.	gene_id "alternative_acceptor.52"; transcript_id "alternative_acceptor.52"; gene_name "CUFF.1513"; flanks "56578876-,56579939^"; structure "1-,2-"; splice_chain "56578895-,56578876-";
chr12	juncbase	alternative_donor	113623083	113618863	.	-	.	gene_id "alternative_donor.49"; transcript_id "alternative_donor.49"; gene_name "CUFF.1541"; flanks "113623083-,113618863^"; structure "1^,2^"; splice_chain "113623083^,113621528^";
chr12	juncbase	intron_retention	56572594	56572318	.	-	.	gene_id "intron_retention.78"; transcript_id "intron_retention.78"; gene_name "CUFF.1513"; flanks "56572594-,56572318^"; structure "0,1^2-"; splice_chain ",56572594^56572318-";
chr12	juncbase	alternative_acceptor	53854927	53856277	.	+	.	gene_id "alternative_acceptor.53"; transcript_id "alternative_acceptor.53"; gene_name "CUFF.1500"; flanks "53854927-,53856277^"; structure "1-,2-"; splice_chain "53856265-,53856277-";
chr12	juncbase	cassette	69203072	69229609	.	+	.	gene_id "cassette.69"; transcript_id "cassette.69"; gene_name "CUFF.1521"; flanks "69203072-,69229609^"; structure "0,1-2^"; splice_chain ",69207334-69207408^";
chr12	juncbase	cassette	69203072	69214105	.	+	.	gene_id "cassette.70"; transcript_id "cassette.70"; gene_name "CUFF.1521"; flanks "69203072-,69214105^"; structure "0,1-2^"; splice_chain ",69207334-69207408^";
chr12	juncbase	cassette	69203072	69210592	.	+	.	gene_id "cassette.71"; transcript_id "cassette.71"; gene_name "CUFF.1521"; flanks "69203072-,69210592^"; structure "0,1-2^"; splice_chain ",69207334-69207408^";
chr12	juncbase	cassette	69203072	69233054	.	+	.	gene_id "cassette.72"; transcript_id "cassette.72"; gene_name "CUFF.1521"; flanks "69203072-,69233054^"; structure "0,1-2^"; splice_chain ",69207334-69207408^";
chr12	juncbase	cassette	69203072	69218143	.	+	.	gene_id "cassette.73"; transcript_id "cassette.73"; gene_name "CUFF.1521"; flanks "69203072-,69218143^"; structure "0,1-2^"; splice_chain ",69207334-69207408^";
chr12	juncbase	jcn_only_AA	48272898	48298738	.	-	.	gene_id "jcn_only_AA.81"; transcript_id "jcn_only_AA.81"; gene_name "CUFF.1477"; flanks "48272898-,48298738^"; structure "1-,2-"; splice_chain "48276557-,48272898-";
chr12	juncbase	jcn_only_AA	48293741	48298738	.	-	.	gene_id "jcn_only_AA.82"; transcript_id "jcn_only_AA.82"; gene_name "CUFF.1477"; flanks "48293741-,48298738^"; structure "1-,2-"; splice_chain "48293741-,48276557-";
chr12	juncbase	intron_retention	56709605	56708750	.	-	.	gene_id "intron_retention.79"; transcript_id "intron_retention.79"; gene_name ""; flanks "56709605-,56708750^"; structure "0,1^2-"; splice_chain ",56709605^56708750-";
chr12	juncbase	intron_retention	7090756	7090344	.	-	.	gene_id "intron_retention.80"; transcript_id "intron_retention.80"; gene_name "CUFF.1450"; flanks "7090756-,7090344^"; structure "0,1^2-"; splice_chain ",7090756^7090344-";
chr12	juncbase	jcn_only_AA	56578876	56579939	.	-	.	gene_id "jcn_only_AA.83"; transcript_id "jcn_only_AA.83"; gene_name "CUFF.1513"; flanks "56578876-,56579939^"; structure "1-,2-"; splice_chain "56578895-,56578876-";
chr12	juncbase	cassette	52985248	52981635	.	-	.	gene_id "cassette.74"; transcript_id "cassette.74"; gene_name "CUFF.1493"; flanks "52985248-,52981635^"; structure "0,1-2^"; splice_chain ",52984745-52984620^";
chr12	juncbase	intron_retention	56578628	56578028	.	-	.	gene_id "intron_retention.81"; transcript_id "intron_retention.81"; gene_name "CUFF.1513"; flanks "56578628-,56578028^"; structure "0,1^2-"; splice_chain ",56578628^56578028-";
chr12	juncbase	intron_retention	72080100	72080440	.	+	.	gene_id "intron_retention.82"; transcript_id "intron_retention.82"; gene_name ""; flanks "72080100-,72080440^"; structure "0,1^2-"; splice_chain ",72080100^72080440-";
chr12	juncbase	alternative_donor	48383011	48381492	.	-	.	gene_id "alternative_donor.50"; transcript_id "alternative_donor.50"; gene_name "CUFF.1480"; flanks "48383011-,48381492^"; structure "1^,2^"; splice_chain "48383011^,48382209^";
chr12	juncbase	intron_retention	58017696	58017786	.	+	.	gene_id "intron_retention.83"; transcript_id "intron_retention.83"; gene_name "CUFF.1518"; flanks "58017696-,58017786^"; structure "0,1^2-"; splice_chain ",58017696^58017786-";
chr12	juncbase	jcn_only_AA	332400	344256	.	-	.	gene_id "jcn_only_AA.84"; transcript_id "jcn_only_AA.84"; gene_name "CUFF.1436"; flanks "332400-,344256^"; structure "1-,2-"; splice_chain "336834-,332400-";
chr11	juncbase	jcn_only_AD	10821791	10821303	.	-	.	gene_id "jcn_only_AD.78"; transcript_id "jcn_only_AD.78"; gene_name "CUFF.1349"; flanks "10821791-,10821303^"; structure "1^,2^"; splice_chain "10821791^,10821637^";
chr11	juncbase	jcn_only_AD	830713	831224	.	+	.	gene_id "jcn_only_AD.79"; transcript_id "jcn_only_AD.79"; gene_name "CUFF.1318"; flanks "830713-,831224^"; structure "1^,2^"; splice_chain "830713^,831032^";
chr11	juncbase	alternative_donor	65480526	65480819	.	+	.	gene_id "alternative_donor.51"; transcript_id "alternative_donor.51"; gene_name "CUFF.1381"; flanks "65480526-,65480819^"; structure "1^,2^"; splice_chain "65480526^,65480529^";
chr11	juncbase	jcn_only_AD	102962413	102960047	.	-	.	gene_id "jcn_only_AD.80"; transcript_id "jcn_only_AD.80"; gene_name "CUFF.1406"; flanks "102962413-,102960047^"; structure "1^,2^"; splice_chain "102962516^,102962413^";
chr11	juncbase	jcn_only_AD	102962245	102960047	.	-	.	gene_id "jcn_only_AD.81"; transcript_id "jcn_only_AD.81"; gene_name "CUFF.1406"; flanks "102962245-,102960047^"; structure "1^,2^"; splice_chain "102962516^,102962245^";
chr11	juncbase	intron_retention	2906864	2906696	.	-	.	gene_id "intron_retention.84"; transcript_id "intron_retention.84"; gene_name "CUFF.1327"; flanks "2906864-,2906696^"; structure "0,1^2-"; splice_chain ",2906864^2906696-";
chr11	juncbase	alternative_acceptor	63998412	63999343	.	+	.	gene_id "alternative_acceptor.54"; transcript_id "alternative_acceptor.54"; gene_name "CUFF.1376"; flanks "63998412-,63999343^"; structure "1-,2-"; splice_chain "63998504-,63999343-";
chr11	juncbase	jcn_only_AA	2188715	2189096	.	-	.	gene_id "jcn_only_AA.85"; transcript_id "jcn_only_AA.85"; gene_name "CUFF.1325"; flanks "2188715-,2189096^"; structure "1-,2-"; splice_chain "2188746-,2188715-";
chr11	juncbase	jcn_only_AD	104915918	104915385	.	-	.	gene_id "jcn_only_AD.82"; transcript_id "jcn_only_AD.82"; gene_name ""; flanks "104915918-,104915385^"; structure "1^,2^"; splice_chain "104916018^,104915918^";
chr11	juncbase	jcn_only_AD	104972135	104915385	.	-	.	gene_id "jcn_only_AD.83"; transcript_id "jcn_only_AD.83"; gene_name ""; flanks "104972135-,104915385^"; structure "1^,2^"; splice_chain "104972135^,104916018^";
chr11	juncbase	alternative_acceptor	75520419	75522469	.	-	.	gene_id "alternative_acceptor.55"; transcript_id "alternative_acceptor.55"; gene_name "CUFF.1395"; flanks "75520419-,75522469^"; structure "1-,2-"; splice_chain "75520419-,75514562-";
chr11	juncbase	alternative_acceptor	75514770	75522469	.	-	.	gene_id "alternative_acceptor.56"; transcript_id "alternative_acceptor.56"; gene_name "CUFF.1395"; flanks "75514770-,75522469^"; structure "1-,2-"; splice_chain "75514770-,75514562-";
chr11	juncbase	alternative_acceptor	118404844	118404984	.	+	.	gene_id "alternative_acceptor.57"; transcript_id "alternative_acceptor.57"; gene_name "CUFF.1417"; flanks "118404844-,118404984^"; structure "1-,2-"; splice_chain "118404981-,118404984-";
chr11	juncbase	jcn_only_AD	63998412	63999343	.	+	.	gene_id "jcn_only_AD.84"; transcript_id "jcn_only_AD.84"; gene_name "CUFF.1376"; flanks "63998412-,63999343^"; structure "1^,2^"; splice_chain "63998412^,63998619^";
chr11	juncbase	cassette	118401949	118403632	.	+	.	gene_id "cassette.75"; transcript_id "cassette.75"; gene_name "CUFF.1417"; flanks "118401949-,118403632^"; structure "0,1-2^"; splice_chain ",118402493-118402586^";
chr11	juncbase	intron_retention	64000337	64001366	.	+	.	gene_id "intron_retention.85"; transcript_id "intron_retention.85"; gene_name "CUFF.1376"; flanks "64000337-,64001366^"; structure "0,1^2-"; splice_chain ",64000337^64001366-";
chr11	juncbase	jcn_only_AD	10823841	10819428	.	-	.	gene_id "jcn_only_AD.85"; transcript_id "jcn_only_AD.85"; gene_name "CUFF.1335"; flanks "10823841-,10819428^"; structure "1^,2^"; splice_chain "10823841^,10820539^";
chr11	juncbase	intron_retention	102962516	102960047	.	-	.	gene_id "intron_retention.86"; transcript_id "intron_retention.86"; gene_name ""; flanks "102962516-,102960047^"; structure "0,1^2-"; splice_chain ",102962516^102960047-";
chr11	juncbase	jcn_only_AD	6633295	6632683	.	-	.	gene_id "jcn_only_AD.86"; transcript_id "jcn_only_AD.86"; gene_name ""; flanks "6633295-,6632683^"; structure "1^,2^"; splice_chain "6633295^,6632895^";
chr11	juncbase	intron_retention	104916018	104915385	.	-	.	gene_id "intron_retention.87"; transcript_id "intron_retention.87"; gene_name ""; flanks "104916018-,104915385^"; structure "0,1^2-"; splice_chain ",104916018^104915385-";
chr11	juncbase	alternative_donor	94706453	94705357	.	-	.	gene_id "alternative_donor.52"; transcript_id "alternative_donor.52"; gene_name "CUFF.1349,CUFF.1402"; flanks "94706453-,94705357^"; structure "1^,2^"; splice_chain "94706453^,94706437^";
chr11	juncbase	alternative_donor	94706662	94705357	.	-	.	gene_id "alternative_donor.53"; transcript_id "alternative_donor.53"; gene_name "CUFF.1349,CUFF.1402"; flanks "94706662-,94705357^"; structure "1^,2^"; splice_chain "94706662^,94706437^";
chr11	juncbase	cassette	36398254	36422547	.	+	.	gene_id "cassette.76"; transcript_id "cassette.76"; gene_name "CUFF.1357"; flanks "36398254-,36422547^"; structure "0,1-2^"; splice_chain ",36415396-36415561^";
chr11	juncbase	alternative_acceptor	104915385	104916018	.	-	.	gene_id "alternative_acceptor.58"; transcript_id "alternative_acceptor.58"; gene_name "CUFF.1409"; flanks "104915385-,104916018^"; structure "1-,2-"; splice_chain "104915658-,104915385-";
chr11	juncbase	alternative_acceptor	8496613	8502081	.	-	.	gene_id "alternative_acceptor.59"; transcript_id "alternative_acceptor.59"; gene_name ""; flanks "8496613-,8502081^"; structure "1-,2-"; splice_chain "8496613-,8496363-";
chr11	juncbase	alternative_acceptor	8498830	8502081	.	-	.	gene_id "alternative_acceptor.60"; transcript_id "alternative_acceptor.60"; gene_name ""; flanks "8498830-,8502081^"; structure "1-,2-"; splice_chain "8498830-,8496363-";
chr11	juncbase	intron_retention	3427945	3428852	.	+	.	gene_id "intron_retention.88"; transcript_id "intron_retention.88"; gene_name ""; flanks "3427945-,3428852^"; structure "0,1^2-"; splice_chain ",3427945^3428852-";
chr11	juncbase	intron_retention	8950924	8949229	.	-	.	gene_id "intron_retention.89"; transcript_id "intron_retention.89"; gene_name ""; flanks "8950924-,8949229^"; structure "0,1^2-"; splice_chain ",8950924^8949229-";
chr11	juncbase	alternative_donor	119249717	119244231	.	-	.	gene_id "alternative_donor.54"; transcript_id "alternative_donor.54"; gene_name ""; flanks "119249717-,119244231^"; structure "1^,2^"; splice_chain "119249717^,119246934^";
chr11	juncbase	alternative_donor	119252183	119244231	.	-	.	gene_id "alternative_donor.55"; transcript_id "alternative_donor.55"; gene_name ""; flanks "119252183-,119244231^"; structure "1^,2^"; splice_chain "119252183^,119246934^";
chr11	juncbase	intron_retention	10823596	10822634	.	-	.	gene_id "intron_retention.90"; transcript_id "intron_retention.90"; gene_name ""; flanks "10823596-,10822634^"; structure "0,1^2-"; splice_chain ",10823596^10822634-";
chr11	juncbase	jcn_only_AD	61588940	61593755	.	+	.	gene_id "jcn_only_AD.87"; transcript_id "jcn_only_AD.87"; gene_name "CUFF.1367"; flanks "61588940-,61593755^"; structure "1^,2^"; splice_chain "61588940^,61593609^";
chr11	juncbase	intron_retention	63999436	64001366	.	+	.	gene_id "intron_retention.91"; transcript_id "intron_retention.91"; gene_name ""; flanks "63999436-,64001366^"; structure "0,1^2-"; splice_chain ",63999436^64001366-";
chr11	juncbase	cassette	8615291	8496613	.	-	.	gene_id "cassette.77"; transcript_id "cassette.77"; gene_name "CUFF.1344"; flanks "8615291-,8496613^"; structure "0,1-2^"; splice_chain ",8602507-8602361^";
chr11	juncbase	intron_retention	407062	406993	.	-	.	gene_id "intron_retention.92"; transcript_id "intron_retention.92"; gene_name "CUFF.1316"; flanks "407062-,406993^"; structure "0,1^2-"; splice_chain ",407062^406993-";
chr11	juncbase	jcn_only_AD	94706437	94705357	.	-	.	gene_id "jcn_only_AD.88"; transcript_id "jcn_only_AD.88"; gene_name "CUFF.1402"; flanks "94706437-,94705357^"; structure "1^,2^"; splice_chain "94706453^,94706437^";
chr11	juncbase	jcn_only_AD	94706662	94705357	.	-	.	gene_id "jcn_only_AD.89"; transcript_id "jcn_only_AD.89"; gene_name "CUFF.1402"; flanks "94706662-,94705357^"; structure "1^,2^"; splice_chain "94706662^,94706453^";
chr11	juncbase	intron_retention	115267609	115267984	.	+	.	gene_id "intron_retention.93"; transcript_id "intron_retention.93"; gene_name "CUFF.1411"; flanks "115267609-,115267984^"; structure "0,1^2-"; splice_chain ",115267609^115267984-";
chr11	juncbase	jcn_only_AD	8615291	8502161	.	-	.	gene_id "jcn_only_AD.90"; transcript_id "jcn_only_AD.90"; gene_name ""; flanks "8615291-,8502161^"; structure "1^,2^"; splice_chain "8615291^,8587257^";
chr11	juncbase	jcn_only_AD	8615630	8502161	.	-	.	gene_id "jcn_only_AD.91"; transcript_id "jcn_only_AD.91"; gene_name ""; flanks "8615630-,8502161^"; structure "1^,2^"; splice_chain "8615630^,8587257^";
chr11	juncbase	jcn_only_AA	826266	828260	.	+	.	gene_id "jcn_only_AA.86"; transcript_id "jcn_only_AA.86"; gene_name "CUFF.1318,CUFF.1426"; flanks "826266-,828260^"; structure "1-,2-"; splice_chain "828230-,828260-";
chr11	juncbase	intron_retention	118403176	118403805	.	+	.	gene_id "intron_retention.94"; transcript_id "intron_retention.94"; gene_name ""; flanks "118403176-,118403805^"; structure "0,1^2-"; splice_chain ",118403176^118403805-";
chr11	juncbase	cassette	3405514	3422989	.	+	.	gene_id "cassette.78"; transcript_id "cassette.78"; gene_name "CUFF.1331"; flanks "3405514-,3422989^"; structure "0,1-2^"; splice_chain ",3418347-3418636^";
chr11	juncbase	jcn_only_AA	8496613	8498797	.	-	.	gene_id "jcn_only_AA.87"; transcript_id "jcn_only_AA.87"; gene_name ""; flanks "8496613-,8498797^"; structure "1-,2-"; splice_chain "8498298-,8496613-";
chr11	juncbase	jcn_only_AA	124767528	124767622	.	-	.	gene_id "jcn_only_AA.88"; transcript_id "jcn_only_AA.88"; gene_name "CUFF.1432"; flanks "124767528-,124767622^"; structure "1-,2-"; splice_chain "124767528-,124766951-";
chr11	juncbase	jcn_only_AA	124767157	124767622	.	-	.	gene_id "jcn_only_AA.89"; transcript_id "jcn_only_AA.89"; gene_name "CUFF.1432"; flanks "124767157-,124767622^"; structure "1-,2-"; splice_chain "124767157-,124766951-";
chr11	juncbase	alternative_acceptor	119291088	119291579	.	-	.	gene_id "alternative_acceptor.61"; transcript_id "alternative_acceptor.61"; gene_name "CUFF.1424"; flanks "119291088-,119291579^"; structure "1-,2-"; splice_chain "119291096-,119291088-";
chr11	juncbase	alternative_acceptor	119291045	119291579	.	-	.	gene_id "alternative_acceptor.62"; transcript_id "alternative_acceptor.62"; gene_name "CUFF.1424"; flanks "119291045-,119291579^"; structure "1-,2-"; splice_chain "119291096-,119291045-";
chr11	juncbase	alternative_acceptor	119291158	119291579	.	-	.	gene_id "alternative_acceptor.63"; transcript_id "alternative_acceptor.63"; gene_name "CUFF.1424"; flanks "119291158-,119291579^"; structure "1-,2-"; splice_chain "119291158-,119291096-";
chr11	juncbase	intron_retention	62365994	62365862	.	-	.	gene_id "intron_retention.95"; transcript_id "intron_retention.95"; gene_name "CUFF.1370"; flanks "62365994-,62365862^"; structure "0,1^2-"; splice_chain ",62365994^62365862-";
chr11	juncbase	intron_retention	556492	556375	.	-	.	gene_id "intron_retention.96"; transcript_id "intron_retention.96"; gene_name "CUFF.1317"; flanks "556492-,556375^"; structure "0,1^2-"; splice_chain ",556492^556375-";
chr11	juncbase	jcn_only_AD	119246934	119244231	.	-	.	gene_id "jcn_only_AD.92"; transcript_id "jcn_only_AD.92"; gene_name ""; flanks "119246934-,119244231^"; structure "1^,2^"; splice_chain "119249717^,119246934^";
chr11	juncbase	jcn_only_AD	119252183	119244231	.	-	.	gene_id "jcn_only_AD.93"; transcript_id "jcn_only_AD.93"; gene_name ""; flanks "119252183-,119244231^"; structure "1^,2^"; splice_chain "119252183^,119249717^";
chr11	juncbase	alternative_donor	10829081	10828928	.	-	.	gene_id "alternative_donor.56"; transcript_id "alternative_donor.56"; gene_name ""; flanks "10829081-,10828928^"; structure "1^,2^"; splice_chain "10829096^,10829081^";
chr11	juncbase	alternative_donor	10829721	10828928	.	-	.	gene_id "alternative_donor.57"; transcript_id "alternative_donor.57"; gene_name ""; flanks "10829721-,10828928^"; structure "1^,2^"; splice_chain "10829721^,10829096^";
chr11	juncbase	alternative_donor	10829292	10828928	.	-	.	gene_id "alternative_donor.58"; transcript_id "alternative_donor.58"; gene_name ""; flanks "10829292-,10828928^"; structure "1^,2^"; splice_chain "10829292^,10829096^";
chr11	juncbase	intron_retention	67788995	67795519	.	+	.	gene_id "intron_retention.97"; transcript_id "intron_retention.97"; gene_name "CUFF.1387"; flanks "67788995-,67795519^"; structure "0,1^2-"; splice_chain ",67788995^67795519-";
chr11	juncbase	jcn_only_AA	118405070	118405222	.	+	.	gene_id "jcn_only_AA.90"; transcript_id "jcn_only_AA.90"; gene_name "CUFF.1417"; flanks "118405070-,118405222^"; structure "1-,2-"; splice_chain "118405222-,118416834-";
chr11	juncbase	jcn_only_AA	118405070	118406223	.	+	.	gene_id "jcn_only_AA.91"; transcript_id "jcn_only_AA.91"; gene_name "CUFF.1417"; flanks "118405070-,118406223^"; structure "1-,2-"; splice_chain "118406223-,118416834-";
chr11	juncbase	jcn_only_AD	119243417	119230944	.	-	.	gene_id "jcn_only_AD.94"; transcript_id "jcn_only_AD.94"; gene_name "CUFF.1424"; flanks "119243417-,119230944^"; structure "1^,2^"; splice_chain "119243417^,119234559^";
chr11	juncbase	jcn_only_AD	119252183	119230944	.	-	.	gene_id "jcn_only_AD.95"; transcript_id "jcn_only_AD.95"; gene_name "CUFF.1424"; flanks "119252183-,119230944^"; structure "1^,2^"; splice_chain "119252183^,119234559^";
chr11	juncbase	alternative_donor	102962516	102954055	.	-	.	gene_id "alternative_donor.59"; transcript_id "alternative_donor.59"; gene_name ""; flanks "102962516-,102954055^"; structure "1^,2^"; splice_chain "102962516^,102959956^";
chr11	juncbase	intron_retention	117070148	117073718	.	+	.	gene_id "intron_retention.98"; transcript_id "intron_retention.98"; gene_name "CUFF.1412"; flanks "117070148-,117073718^"; structure "0,1^2-"; splice_chain ",117070148^117073718-";
chr11	juncbase	intron_retention	65482381	65484138	.	+	.	gene_id "intron_retention.99"; transcript_id "intron_retention.99"; gene_name "CUFF.1381"; flanks "65482381-,65484138^"; structure "0,1^2-"; splice_chain ",65482381^65484138-";
chr11	juncbase	jcn_only_AD	8502081	8496363	.	-	.	gene_id "jcn_only_AD.96"; transcript_id "jcn_only_AD.96"; gene_name ""; flanks "8502081-,8496363^"; structure "1^,2^"; splice_chain "8588798^,8502081^";
chr11	juncbase	jcn_only_AD	8615291	8496363	.	-	.	gene_id "jcn_only_AD.97"; transcript_id "jcn_only_AD.97"; gene_name ""; flanks "8615291-,8496363^"; structure "1^,2^"; splice_chain "8615291^,8588798^";
chr11	juncbase	alternative_donor	117070545	117073718	.	+	.	gene_id "alternative_donor.60"; transcript_id "alternative_donor.60"; gene_name "CUFF.1412"; flanks "117070545-,117073718^"; structure "1^,2^"; splice_chain "117070148^,117070545^";
chr11	juncbase	alternative_donor	117072657	117073718	.	+	.	gene_id "alternative_donor.61"; transcript_id "alternative_donor.61"; gene_name "CUFF.1412"; flanks "117072657-,117073718^"; structure "1^,2^"; splice_chain "117070148^,117072657^";
chr11	juncbase	alternative_donor	117071058	117073718	.	+	.	gene_id "alternative_donor.62"; transcript_id "alternative_donor.62"; gene_name "CUFF.1412"; flanks "117071058-,117073718^"; structure "1^,2^"; splice_chain "117070148^,117071058^";
chr11	juncbase	intron_retention	117074600	117074931	.	+	.	gene_id "intron_retention.100"; transcript_id "intron_retention.100"; gene_name "CUFF.1412"; flanks "117074600-,117074931^"; structure "0,1^2-"; splice_chain ",117074600^117074931-";
chr11	juncbase	cassette	119057399	119058273	.	+	.	gene_id "cassette.79"; transcript_id "cassette.79"; gene_name "CUFF.1426"; flanks "119057399-,119058273^"; structure "0,1-2^"; splice_chain ",119057979-119058168^";
chr11	juncbase	cassette	36459026	36472759	.	+	.	gene_id "cassette.80"; transcript_id "cassette.80"; gene_name "CUFF.1357"; flanks "36459026-,36472759^"; structure "0,1-2^"; splice_chain ",36467850-36467990^";
chr11	juncbase	jcn_only_AD	118533497	118532438	.	-	.	gene_id "jcn_only_AD.98"; transcript_id "jcn_only_AD.98"; gene_name "CUFF.1418"; flanks "118533497-,118532438^"; structure "1^,2^"; splice_chain "118533497^,118532599^";
chr11	juncbase	intron_retention	6640427	6640146	.	-	.	gene_id "intron_retention.101"; transcript_id "intron_retention.101"; gene_name "CUFF.1339"; flanks "6640427-,6640146^"; structure "0,1^2-"; splice_chain ",6640427^6640146-";
chr11	juncbase	intron_retention	119056337	119056558	.	+	.	gene_id "intron_retention.102"; transcript_id "intron_retention.102"; gene_name ""; flanks "119056337-,119056558^"; structure "0,1^2-"; splice_chain ",119056337^119056558-";
chr11	juncbase	alternative_acceptor	67766775	67766989	.	-	.	gene_id "alternative_acceptor.64"; transcript_id "alternative_acceptor.64"; gene_name "CUFF.1386"; flanks "67766775-,67766989^"; structure "1-,2-"; splice_chain "67766845-,67766775-";
chr11	juncbase	intron_retention	417325	410027	.	-	.	gene_id "intron_retention.103"; transcript_id "intron_retention.103"; gene_name ""; flanks "417325-,410027^"; structure "0,1^2-"; splice_chain ",417325^410027-";
chr11	juncbase	intron_retention	555734	555503	.	-	.	gene_id "intron_retention.104"; transcript_id "intron_retention.104"; gene_name "CUFF.1317"; flanks "555734-,555503^"; structure "0,1^2-"; splice_chain ",555734^555503-";
chr11	juncbase	intron_retention	118919188	118919082	.	-	.	gene_id "intron_retention.105"; transcript_id "intron_retention.105"; gene_name "CUFF.1422"; flanks "118919188-,118919082^"; structure "0,1^2-"; splice_chain ",118919188^118919082-";
chr11	juncbase	alternative_acceptor	119056219	119056634	.	+	.	gene_id "alternative_acceptor.65"; transcript_id "alternative_acceptor.65"; gene_name "CUFF.1426"; flanks "119056219-,119056634^"; structure "1-,2-"; splice_chain "119056631-,119056634-";
chr11	juncbase	alternative_acceptor	119056219	119056558	.	+	.	gene_id "alternative_acceptor.66"; transcript_id "alternative_acceptor.66"; gene_name "CUFF.1426"; flanks "119056219-,119056558^"; structure "1-,2-"; splice_chain "119056558-,119056631-";
chr11	juncbase	jcn_only_AA	118405070	118416834	.	+	.	gene_id "jcn_only_AA.92"; transcript_id "jcn_only_AA.92"; gene_name "CUFF.1417"; flanks "118405070-,118416834^"; structure "1-,2-"; splice_chain "118406223-,118416834-";
chr11	juncbase	jcn_only_AA	118405070	118405222	.	+	.	gene_id "jcn_only_AA.93"; transcript_id "jcn_only_AA.93"; gene_name "CUFF.1417"; flanks "118405070-,118405222^"; structure "1-,2-"; splice_chain "118405222-,118406223-";
chr11	juncbase	jcn_only_AD	102962413	102960047	.	-	.	gene_id "jcn_only_AD.99"; transcript_id "jcn_only_AD.99"; gene_name "CUFF.1323,CUFF.1406"; flanks "102962413-,102960047^"; structure "1^,2^"; splice_chain "102962413^,102962245^";
chr11	juncbase	jcn_only_AD	102962516	102960047	.	-	.	gene_id "jcn_only_AD.100"; transcript_id "jcn_only_AD.100"; gene_name "CUFF.1323,CUFF.1406"; flanks "102962516-,102960047^"; structure "1^,2^"; splice_chain "102962516^,102962245^";
chr11	juncbase	cassette	8494710	8483456	.	-	.	gene_id "cassette.81"; transcript_id "cassette.81"; gene_name "CUFF.1344"; flanks "8494710-,8483456^"; structure "0,1-2^"; splice_chain ",8486369-8486256^";
chr11	juncbase	alternative_acceptor	119056337	119056631	.	+	.	gene_id "alternative_acceptor.67"; transcript_id "alternative_acceptor.67"; gene_name ""; flanks "119056337-,119056631^"; structure "1-,2-"; splice_chain "119056558-,119056631-";
chr11	juncbase	intron_retention	62363930	62363809	.	-	.	gene_id "intron_retention.106"; transcript_id "intron_retention.106"; gene_name "CUFF.1370"; flanks "62363930-,62363809^"; structure "0,1^2-"; splice_chain ",62363930^62363809-";
chr11	juncbase	jcn_only_AA	75514562	75522469	.	-	.	gene_id "jcn_only_AA.94"; transcript_id "jcn_only_AA.94"; gene_name "CUFF.1395"; flanks "75514562-,75522469^"; structure "1-,2-"; splice_chain "75514770-,75514562-";
chr11	juncbase	jcn_only_AA	75520419	75522469	.	-	.	gene_id "jcn_only_AA.95"; transcript_id "jcn_only_AA.95"; gene_name "CUFF.1395"; flanks "75520419-,75522469^"; structure "1-,2-"; splice_chain "75520419-,75514770-";
chr11	juncbase	jcn_only_AD	8615630	8474453	.	-	.	gene_id "jcn_only_AD.101"; transcript_id "jcn_only_AD.101"; gene_name ""; flanks "8615630-,8474453^"; structure "1^,2^"; splice_chain "8615630^,8476291^";
chr11	juncbase	intron_retention	67771418	67771268	.	-	.	gene_id "intron_retention.107"; transcript_id "intron_retention.107"; gene_name "CUFF.1386"; flanks "67771418-,67771268^"; structure "0,1^2-"; splice_chain ",67771418^67771268-";
chr11	juncbase	intron_retention	115268246	115268301	.	+	.	gene_id "intron_retention.108"; transcript_id "intron_retention.108"; gene_name "CUFF.1411"; flanks "115268246-,115268301^"; structure "0,1^2-"; splice_chain ",115268246^115268301-";
chr11	juncbase	intron_retention	8615630	8474453	.	-	.	gene_id "intron_retention.109"; transcript_id "intron_retention.109"; gene_name ""; flanks "8615630-,8474453^"; structure "0,1^2-"; splice_chain ",8615630^8474453-";
chr11	juncbase	intron_retention	57003266	57001332	.	-	.	gene_id "intron_retention.110"; transcript_id "intron_retention.110"; gene_name "CUFF.1364"; flanks "57003266-,57001332^"; structure "0,1^2-"; splice_chain ",57003266^57001332-";
chr11	juncbase	alternative_acceptor	67790229	67793477	.	+	.	gene_id "alternative_acceptor.68"; transcript_id "alternative_acceptor.68"; gene_name "CUFF.1387"; flanks "67790229-,67793477^"; structure "1-,2-"; splice_chain "67791676-,67793477-";
chr11	juncbase	cassette	67782929	67786242	.	+	.	gene_id "cassette.82"; transcript_id "cassette.82"; gene_name "CUFF.1387"; flanks "67782929-,67786242^"; structure "0,1-2^"; splice_chain ",67785997-67786106^";
chr11	juncbase	jcn_only_AA	63669802	63670076	.	+	.	gene_id "jcn_only_AA.96"; transcript_id "jcn_only_AA.96"; gene_name "CUFF.1318,CUFF.1374"; flanks "63669802-,63670076^"; structure "1-,2-"; splice_chain "63670073-,63670076-";
chr11	juncbase	intron_retention	407062	406538	.	-	.	gene_id "intron_retention.111"; transcript_id "intron_retention.111"; gene_name ""; flanks "407062-,406538^"; structure "0,1^2-"; splice_chain ",407062^406538-";
chr11	juncbase	alternative_donor	124767622	124767157	.	-	.	gene_id "alternative_donor.63"; transcript_id "alternative_donor.63"; gene_name "CUFF.1432"; flanks "124767622-,124767157^"; structure "1^,2^"; splice_chain "124767622^,124767484^";
chr11	juncbase	alternative_donor	124768294	124767157	.	-	.	gene_id "alternative_donor.64"; transcript_id "alternative_donor.64"; gene_name "CUFF.1432"; flanks "124768294-,124767157^"; structure "1^,2^"; splice_chain "124768294^,124767484^";
chr11	juncbase	intron_retention	119059260	119059349	.	+	.	gene_id "intron_retention.112"; transcript_id "intron_retention.112"; gene_name "CUFF.1426"; flanks "119059260-,119059349^"; structure "0,1^2-"; splice_chain ",119059260^119059349-";
chr11	juncbase	jcn_only_AD	8615630	8486369	.	-	.	gene_id "jcn_only_AD.102"; transcript_id "jcn_only_AD.102"; gene_name "CUFF.1339"; flanks "8615630-,8486369^"; structure "1^,2^"; splice_chain "8615630^,8494710^";
chr11	juncbase	jcn_only_AA	124766951	124767622	.	-	.	gene_id "jcn_only_AA.97"; transcript_id "jcn_only_AA.97"; gene_name "CUFF.1432"; flanks "124766951-,124767622^"; structure "1-,2-"; splice_chain "124767528-,124766951-";
chr11	juncbase	jcn_only_AA	124767157	124767622	.	-	.	gene_id "jcn_only_AA.98"; transcript_id "jcn_only_AA.98"; gene_name "CUFF.1432"; flanks "124767157-,124767622^"; structure "1-,2-"; splice_chain "124767528-,124767157-";
chr11	juncbase	alternative_acceptor	407534	407817	.	-	.	gene_id "alternative_acceptor.69"; transcript_id "alternative_acceptor.69"; gene_name "CUFF.1316"; flanks "407534-,407817^"; structure "1-,2-"; splice_chain "407568-,407534-";
chr11	juncbase	cassette	107917096	107923387	.	+	.	gene_id "cassette.83"; transcript_id "cassette.83"; gene_name "CUFF.1410"; flanks "107917096-,107923387^"; structure "0,1-2^"; splice_chain ",107920617-107920793^";
chr11	juncbase	alternative_acceptor	119230944	119252183	.	-	.	gene_id "alternative_acceptor.70"; transcript_id "alternative_acceptor.70"; gene_name "CUFF.1424"; flanks "119230944-,119252183^"; structure "1-,2-"; splice_chain "119244231-,119230944-";
chr11	juncbase	intron_retention	830713	830866	.	+	.	gene_id "intron_retention.113"; transcript_id "intron_retention.113"; gene_name "CUFF.1318"; flanks "830713-,830866^"; structure "0,1^2-"; splice_chain ",830713^830866-";
chr11	juncbase	jcn_only_AA	75514562	75522469	.	-	.	gene_id "jcn_only_AA.99"; transcript_id "jcn_only_AA.99"; gene_name "CUFF.1395"; flanks "75514562-,75522469^"; structure "1-,2-"; splice_chain "75520419-,75514562-";
chr11	juncbase	jcn_only_AA	75514770	75522469	.	-	.	gene_id "jcn_only_AA.100"; transcript_id "jcn_only_AA.100"; gene_name "CUFF.1395"; flanks "75514770-,75522469^"; structure "1-,2-"; splice_chain "75520419-,75514770-";
chr11	juncbase	alternative_donor	828963	829360	.	+	.	gene_id "alternative_donor.65"; transcript_id "alternative_donor.65"; gene_name "CUFF.1318"; flanks "828963-,829360^"; structure "1^,2^"; splice_chain "828963^,829183^";
chr11	juncbase	alternative_donor	65486220	65486344	.	+	.	gene_id "alternative_donor.66"; transcript_id "alternative_donor.66"; gene_name "CUFF.1381"; flanks "65486220-,65486344^"; structure "1^,2^"; splice_chain "65486220^,65486246^";
chr11	juncbase	intron_retention	119056874	119057188	.	+	.	gene_id "intron_retention.114"; transcript_id "intron_retention.114"; gene_name "CUFF.1426"; flanks "119056874-,119057188^"; structure "0,1^2-"; splice_chain ",119056874^119057188-";
chr11	juncbase	jcn_only_AD	10829081	10828928	.	-	.	gene_id "jcn_only_AD.103"; transcript_id "jcn_only_AD.103"; gene_name "CUFF.1349"; flanks "10829081-,10828928^"; structure "1^,2^"; splice_chain "10829292^,10829081^";
chr11	juncbase	jcn_only_AD	10829721	10828928	.	-	.	gene_id "jcn_only_AD.104"; transcript_id "jcn_only_AD.104"; gene_name "CUFF.1349"; flanks "10829721-,10828928^"; structure "1^,2^"; splice_chain "10829721^,10829292^";
chr11	juncbase	jcn_only_AD	10829096	10828928	.	-	.	gene_id "jcn_only_AD.105"; transcript_id "jcn_only_AD.105"; gene_name "CUFF.1349"; flanks "10829096-,10828928^"; structure "1^,2^"; splice_chain "10829292^,10829096^";
chr11	juncbase	jcn_only_AA	8950975	8953689	.	-	.	gene_id "jcn_only_AA.101"; transcript_id "jcn_only_AA.101"; gene_name "CUFF.1347"; flanks "8950975-,8953689^"; structure "1-,2-"; splice_chain "8951080-,8950975-";
chr11	juncbase	intron_retention	2192927	2190925	.	-	.	gene_id "intron_retention.115"; transcript_id "intron_retention.115"; gene_name ""; flanks "2192927-,2190925^"; structure "0,1^2-"; splice_chain ",2192927^2190925-";
chr11	juncbase	jcn_only_AA	829540	829986	.	+	.	gene_id "jcn_only_AA.102"; transcript_id "jcn_only_AA.102"; gene_name "CUFF.1318"; flanks "829540-,829986^"; structure "1-,2-"; splice_chain "829968-,829986-";
chr11	juncbase	intron_retention	94704539	94704229	.	-	.	gene_id "intron_retention.116"; transcript_id "intron_retention.116"; gene_name "CUFF.1402"; flanks "94704539-,94704229^"; structure "0,1^2-"; splice_chain ",94704539^94704229-";
chr11	juncbase	intron_retention	67766989	67766775	.	-	.	gene_id "intron_retention.117"; transcript_id "intron_retention.117"; gene_name "CUFF.1386"; flanks "67766989-,67766775^"; structure "0,1^2-"; splice_chain ",67766989^67766775-";
chr11	juncbase	jcn_only_AD	417325	410027	.	-	.	gene_id "jcn_only_AD.106"; transcript_id "jcn_only_AD.106"; gene_name "CUFF.1370"; flanks "417325-,410027^"; structure "1^,2^"; splice_chain "417325^,417294^";
chr11	juncbase	jcn_only_AD	117070545	117073718	.	+	.	gene_id "jcn_only_AD.107"; transcript_id "jcn_only_AD.107"; gene_name "CUFF.1412"; flanks "117070545-,117073718^"; structure "1^,2^"; splice_chain "117070148^,117070545^";
chr11	juncbase	jcn_only_AD	117072657	117073718	.	+	.	gene_id "jcn_only_AD.108"; transcript_id "jcn_only_AD.108"; gene_name "CUFF.1412"; flanks "117072657-,117073718^"; structure "1^,2^"; splice_chain "117070148^,117072657^";
chr11	juncbase	jcn_only_AD	117071058	117073718	.	+	.	gene_id "jcn_only_AD.109"; transcript_id "jcn_only_AD.109"; gene_name "CUFF.1412"; flanks "117071058-,117073718^"; structure "1^,2^"; splice_chain "117070148^,117071058^";
chr11	juncbase	intron_retention	5699434	5687311	.	-	.	gene_id "intron_retention.118"; transcript_id "intron_retention.118"; gene_name "CUFF.1335"; flanks "5699434-,5687311^"; structure "0,1^2-"; splice_chain ",5699434^5687311-";
chr11	juncbase	jcn_only_AA	8941997	8947010	.	-	.	gene_id "jcn_only_AA.103"; transcript_id "jcn_only_AA.103"; gene_name "CUFF.1347"; flanks "8941997-,8947010^"; structure "1-,2-"; splice_chain "8943062-,8941997-";
chr11	juncbase	jcn_only_AA	67786362	67786639	.	+	.	gene_id "jcn_only_AA.104"; transcript_id "jcn_only_AA.104"; gene_name "CUFF.1381,CUFF.1387"; flanks "67786362-,67786639^"; structure "1-,2-"; splice_chain "67786535-,67786639-";
chr11	juncbase	jcn_only_AD	102962516	102960047	.	-	.	gene_id "jcn_only_AD.110"; transcript_id "jcn_only_AD.110"; gene_name ""; flanks "102962516-,102960047^"; structure "1^,2^"; splice_chain "102962516^,102962413^";
chr11	juncbase	jcn_only_AD	102962245	102960047	.	-	.	gene_id "jcn_only_AD.111"; transcript_id "jcn_only_AD.111"; gene_name ""; flanks "102962245-,102960047^"; structure "1^,2^"; splice_chain "102962413^,102962245^";
chr11	juncbase	intron_retention	8502081	8496363	.	-	.	gene_id "intron_retention.119"; transcript_id "intron_retention.119"; gene_name ""; flanks "8502081-,8496363^"; structure "0,1^2-"; splice_chain ",8502081^8496363-";
chr11	juncbase	jcn_only_AD	118927786	118927129	.	-	.	gene_id "jcn_only_AD.112"; transcript_id "jcn_only_AD.112"; gene_name "CUFF.1325"; flanks "118927786-,118927129^"; structure "1^,2^"; splice_chain "118927786^,118927731^";
chr11	juncbase	cassette	407062	406538	.	-	.	gene_id "cassette.84"; transcript_id "cassette.84"; gene_name "CUFF.1316"; flanks "407062-,406538^"; structure "0,1-2^"; splice_chain ",406993-406843^";
chr11	juncbase	jcn_only_AA	558979	559347	.	-	.	gene_id "jcn_only_AA.105"; transcript_id "jcn_only_AA.105"; gene_name "CUFF.1317"; flanks "558979-,559347^"; structure "1-,2-"; splice_chain "559062-,558979-";
chr11	juncbase	cassette	8457041	8414257	.	-	.	gene_id "cassette.85"; transcript_id "cassette.85"; gene_name "CUFF.1344"; flanks "8457041-,8414257^"; structure "0,1-2^"; splice_chain ",8435239-8435042^";
chr11	juncbase	jcn_only_AD	119058367	119058649	.	+	.	gene_id "jcn_only_AD.113"; transcript_id "jcn_only_AD.113"; gene_name "CUFF.1426"; flanks "119058367-,119058649^"; structure "1^,2^"; splice_chain "119058367^,119058409^";
chr11	juncbase	intron_retention	119058409	119058649	.	+	.	gene_id "intron_retention.120"; transcript_id "intron_retention.120"; gene_name "CUFF.1426"; flanks "119058409-,119058649^"; structure "0,1^2-"; splice_chain ",119058409^119058649-";
chr11	juncbase	jcn_only_AD	2906432	2905364	.	-	.	gene_id "jcn_only_AD.114"; transcript_id "jcn_only_AD.114"; gene_name "CUFF.1327"; flanks "2906432-,2905364^"; structure "1^,2^"; splice_chain "2906432^,2905900^";
chr11	juncbase	intron_retention	6621716	6621495	.	-	.	gene_id "intron_retention.121"; transcript_id "intron_retention.121"; gene_name "CUFF.1340"; flanks "6621716-,6621495^"; structure "0,1^2-"; splice_chain ",6621716^6621495-";
chr11	juncbase	jcn_only_AD	94706453	94705357	.	-	.	gene_id "jcn_only_AD.115"; transcript_id "jcn_only_AD.115"; gene_name "CUFF.1349,CUFF.1402"; flanks "94706453-,94705357^"; structure "1^,2^"; splice_chain "94706453^,94706437^";
chr11	juncbase	jcn_only_AD	94706662	94705357	.	-	.	gene_id "jcn_only_AD.116"; transcript_id "jcn_only_AD.116"; gene_name "CUFF.1349,CUFF.1402"; flanks "94706662-,94705357^"; structure "1^,2^"; splice_chain "94706662^,94706437^";
chr11	juncbase	intron_retention	75524648	75522581	.	-	.	gene_id "intron_retention.122"; transcript_id "intron_retention.122"; gene_name "CUFF.1395"; flanks "75524648-,75522581^"; structure "0,1^2-"; splice_chain ",75524648^75522581-";
chr11	juncbase	cassette	10823596	10822634	.	-	.	gene_id "cassette.86"; transcript_id "cassette.86"; gene_name "CUFF.1349"; flanks "10823596-,10822634^"; structure "0,1-2^"; splice_chain ",10823321-10823208^";
chr11	juncbase	intron_retention	3418636	3422989	.	+	.	gene_id "intron_retention.123"; transcript_id "intron_retention.123"; gene_name "CUFF.1331"; flanks "3418636-,3422989^"; structure "0,1^2-"; splice_chain ",3418636^3422989-";
chr11	juncbase	intron_retention	119291579	119291096	.	-	.	gene_id "intron_retention.124"; transcript_id "intron_retention.124"; gene_name ""; flanks "119291579-,119291096^"; structure "0,1^2-"; splice_chain ",119291579^119291096-";
chr11	juncbase	jcn_only_AA	827711	828260	.	+	.	gene_id "jcn_only_AA.106"; transcript_id "jcn_only_AA.106"; gene_name ""; flanks "827711-,828260^"; structure "1-,2-"; splice_chain "828230-,828260-";
chr11	juncbase	cassette	102962516	102937296	.	-	.	gene_id "cassette.87"; transcript_id "cassette.87"; gene_name "CUFF.1406"; flanks "102962516-,102937296^"; structure "0,1-2^"; splice_chain ",102954055-102953985^";
chr11	juncbase	cassette	2188665	2187779	.	-	.	gene_id "cassette.88"; transcript_id "cassette.88"; gene_name "CUFF.1325"; flanks "2188665-,2187779^"; structure "0,1-2^"; splice_chain ",2187998-2187863^";
chr11	juncbase	jcn_only_AD	104916018	104915385	.	-	.	gene_id "jcn_only_AD.117"; transcript_id "jcn_only_AD.117"; gene_name "CUFF.1409"; flanks "104916018-,104915385^"; structure "1^,2^"; splice_chain "104916018^,104915918^";
chr11	juncbase	jcn_only_AD	104972135	104915385	.	-	.	gene_id "jcn_only_AD.118"; transcript_id "jcn_only_AD.118"; gene_name "CUFF.1409"; flanks "104972135-,104915385^"; structure "1^,2^"; splice_chain "104972135^,104915918^";
chr11	juncbase	intron_retention	118402586	118403125	.	+	.	gene_id "intron_retention.125"; transcript_id "intron_retention.125"; gene_name ""; flanks "118402586-,118403125^"; structure "0,1^2-"; splice_chain ",118402586^118403125-";
chr11	juncbase	jcn_only_AA	63656436	63662631	.	+	.	gene_id "jcn_only_AA.107"; transcript_id "jcn_only_AA.107"; gene_name ""; flanks "63656436-,63662631^"; structure "1-,2-"; splice_chain "63657694-,63662631-";
chr11	juncbase	jcn_only_AD	65486220	65486344	.	+	.	gene_id "jcn_only_AD.119"; transcript_id "jcn_only_AD.119"; gene_name "CUFF.1381"; flanks "65486220-,65486344^"; structure "1^,2^"; splice_chain "65486220^,65486246^";
chr11	juncbase	intron_retention	119291579	119291045	.	-	.	gene_id "intron_retention.126"; transcript_id "intron_retention.126"; gene_name ""; flanks "119291579-,119291045^"; structure "0,1^2-"; splice_chain ",119291579^119291045-";
chr11	juncbase	cassette	118401949	118403632	.	+	.	gene_id "cassette.89"; transcript_id "cassette.89"; gene_name "CUFF.1417"; flanks "118401949-,118403632^"; structure "0,1-2^"; splice_chain ",118402490-118402586^";
chr11	juncbase	alternative_donor	124767484	124767157	.	-	.	gene_id "alternative_donor.67"; transcript_id "alternative_donor.67"; gene_name ""; flanks "124767484-,124767157^"; structure "1^,2^"; splice_chain "124767622^,124767484^";
chr11	juncbase	alternative_donor	124768294	124767157	.	-	.	gene_id "alternative_donor.68"; transcript_id "alternative_donor.68"; gene_name ""; flanks "124768294-,124767157^"; structure "1^,2^"; splice_chain "124768294^,124767622^";
chr11	juncbase	jcn_only_AD	117070545	117073718	.	+	.	gene_id "jcn_only_AD.120"; transcript_id "jcn_only_AD.120"; gene_name "CUFF.1412"; flanks "117070545-,117073718^"; structure "1^,2^"; splice_chain "117070545^,117071058^";
chr11	juncbase	jcn_only_AD	117072657	117073718	.	+	.	gene_id "jcn_only_AD.121"; transcript_id "jcn_only_AD.121"; gene_name "CUFF.1412"; flanks "117072657-,117073718^"; structure "1^,2^"; splice_chain "117071058^,117072657^";
chr11	juncbase	jcn_only_AD	117070148	117073718	.	+	.	gene_id "jcn_only_AD.122"; transcript_id "jcn_only_AD.122"; gene_name "CUFF.1412"; flanks "117070148-,117073718^"; structure "1^,2^"; splice_chain "117070148^,117071058^";
chr11	juncbase	cassette	102953477	102937296	.	-	.	gene_id "cassette.90"; transcript_id "cassette.90"; gene_name "CUFF.1406"; flanks "102953477-,102937296^"; structure "0,1-2^"; splice_chain ",102950726-102950638^";
chr11	juncbase	intron_retention	63670604	63671570	.	+	.	gene_id "intron_retention.127"; transcript_id "intron_retention.127"; gene_name ""; flanks "63670604-,63671570^"; structure "0,1^2-"; splice_chain ",63670604^63671570-";
chr11	juncbase	jcn_only_AA	124766951	124767622	.	-	.	gene_id "jcn_only_AA.108"; transcript_id "jcn_only_AA.108"; gene_name "CUFF.1432"; flanks "124766951-,124767622^"; structure "1-,2-"; splice_chain "124767157-,124766951-";
chr11	juncbase	jcn_only_AA	124767528	124767622	.	-	.	gene_id "jcn_only_AA.109"; transcript_id "jcn_only_AA.109"; gene_name "CUFF.1432"; flanks "124767528-,124767622^"; structure "1-,2-"; splice_chain "124767528-,124767157-";
chr11	juncbase	intron_retention	406142	406059	.	-	.	gene_id "intron_retention.128"; transcript_id "intron_retention.128"; gene_name "CUFF.1316"; flanks "406142-,406059^"; structure "0,1^2-"; splice_chain ",406142^406059-";
chr11	juncbase	jcn_only_AA	10821156	10821637	.	-	.	gene_id "jcn_only_AA.110"; transcript_id "jcn_only_AA.110"; gene_name "CUFF.1349"; flanks "10821156-,10821637^"; structure "1-,2-"; splice_chain "10821303-,10821156-";
chr11	juncbase	intron_retention	10823596	10823321	.	-	.	gene_id "intron_retention.129"; transcript_id "intron_retention.129"; gene_name "CUFF.1349"; flanks "10823596-,10823321^"; structure "0,1^2-"; splice_chain ",10823596^10823321-";
chr11	juncbase	jcn_only_AA	119291088	119291579	.	-	.	gene_id "jcn_only_AA.111"; transcript_id "jcn_only_AA.111"; gene_name "CUFF.1424"; flanks "119291088-,119291579^"; structure "1-,2-"; splice_chain "119291158-,119291088-";
chr11	juncbase	jcn_only_AA	119291096	119291579	.	-	.	gene_id "jcn_only_AA.112"; transcript_id "jcn_only_AA.112"; gene_name "CUFF.1424"; flanks "119291096-,119291579^"; structure "1-,2-"; splice_chain "119291158-,119291096-";
chr11	juncbase	jcn_only_AA	119291045	119291579	.	-	.	gene_id "jcn_only_AA.113"; transcript_id "jcn_only_AA.113"; gene_name "CUFF.1424"; flanks "119291045-,119291579^"; structure "1-,2-"; splice_chain "119291158-,119291045-";
chr11	juncbase	alternative_acceptor	65479750	65479850	.	+	.	gene_id "alternative_acceptor.71"; transcript_id "alternative_acceptor.71"; gene_name "CUFF.1381,CUFF.1388"; flanks "65479750-,65479850^"; structure "1-,2-"; splice_chain "65479821-,65479850-";
chr11	juncbase	intron_retention	119291579	119291158	.	-	.	gene_id "intron_retention.130"; transcript_id "intron_retention.130"; gene_name "CUFF.1424"; flanks "119291579-,119291158^"; structure "0,1^2-"; splice_chain ",119291579^119291158-";
chr11	juncbase	alternative_acceptor	118405070	118405222	.	+	.	gene_id "alternative_acceptor.72"; transcript_id "alternative_acceptor.72"; gene_name "CUFF.1417"; flanks "118405070-,118405222^"; structure "1-,2-"; splice_chain "118405222-,118416834-";
chr11	juncbase	alternative_acceptor	118405070	118406223	.	+	.	gene_id "alternative_acceptor.73"; transcript_id "alternative_acceptor.73"; gene_name "CUFF.1417"; flanks "118405070-,118406223^"; structure "1-,2-"; splice_chain "118406223-,118416834-";
chr11	juncbase	cassette	2466714	2549158	.	+	.	gene_id "cassette.91"; transcript_id "cassette.91"; gene_name "CUFF.1326"; flanks "2466714-,2549158^"; structure "0,1-2^"; splice_chain ",2542709-2542800^";
chr11	juncbase	alternative_acceptor	75514562	75522469	.	-	.	gene_id "alternative_acceptor.74"; transcript_id "alternative_acceptor.74"; gene_name "CUFF.1395"; flanks "75514562-,75522469^"; structure "1-,2-"; splice_chain "75520419-,75514562-";
chr11	juncbase	alternative_acceptor	75514770	75522469	.	-	.	gene_id "alternative_acceptor.75"; transcript_id "alternative_acceptor.75"; gene_name "CUFF.1395"; flanks "75514770-,75522469^"; structure "1-,2-"; splice_chain "75520419-,75514770-";
chr11	juncbase	intron_retention	65484453	65486061	.	+	.	gene_id "intron_retention.131"; transcript_id "intron_retention.131"; gene_name "CUFF.1381"; flanks "65484453-,65486061^"; structure "0,1^2-"; splice_chain ",65484453^65486061-";
chr11	juncbase	intron_retention	67766989	67766845	.	-	.	gene_id "intron_retention.132"; transcript_id "intron_retention.132"; gene_name ""; flanks "67766989-,67766845^"; structure "0,1^2-"; splice_chain ",67766989^67766845-";
chr11	juncbase	intron_retention	2905900	2905364	.	-	.	gene_id "intron_retention.133"; transcript_id "intron_retention.133"; gene_name "CUFF.1327"; flanks "2905900-,2905364^"; structure "0,1^2-"; splice_chain ",2905900^2905364-";
chr11	juncbase	jcn_only_AD	406349	406059	.	-	.	gene_id "jcn_only_AD.123"; transcript_id "jcn_only_AD.123"; gene_name "CUFF.1316"; flanks "406349-,406059^"; structure "1^,2^"; splice_chain "406349^,406142^";
chr11	juncbase	alternative_donor	102962516	102960047	.	-	.	gene_id "alternative_donor.69"; transcript_id "alternative_donor.69"; gene_name ""; flanks "102962516-,102960047^"; structure "1^,2^"; splice_chain "102962516^,102962413^";
chr11	juncbase	alternative_donor	102962245	102960047	.	-	.	gene_id "alternative_donor.70"; transcript_id "alternative_donor.70"; gene_name ""; flanks "102962245-,102960047^"; structure "1^,2^"; splice_chain "102962413^,102962245^";
chr11	juncbase	alternative_donor	10829081	10828928	.	-	.	gene_id "alternative_donor.71"; transcript_id "alternative_donor.71"; gene_name "CUFF.1349"; flanks "10829081-,10828928^"; structure "1^,2^"; splice_chain "10829721^,10829081^";
chr11	juncbase	alternative_donor	10829292	10828928	.	-	.	gene_id "alternative_donor.72"; transcript_id "alternative_donor.72"; gene_name "CUFF.1349"; flanks "10829292-,10828928^"; structure "1^,2^"; splice_chain "10829721^,10829292^";
chr11	juncbase	alternative_donor	10829096	10828928	.	-	.	gene_id "alternative_donor.73"; transcript_id "alternative_donor.73"; gene_name "CUFF.1349"; flanks "10829096-,10828928^"; structure "1^,2^"; splice_chain "10829721^,10829096^";
chr11	juncbase	alternative_acceptor	118405070	118416834	.	+	.	gene_id "alternative_acceptor.76"; transcript_id "alternative_acceptor.76"; gene_name "CUFF.1417"; flanks "118405070-,118416834^"; structure "1-,2-"; splice_chain "118406223-,118416834-";
chr11	juncbase	alternative_acceptor	118405070	118405222	.	+	.	gene_id "alternative_acceptor.77"; transcript_id "alternative_acceptor.77"; gene_name "CUFF.1417"; flanks "118405070-,118405222^"; structure "1-,2-"; splice_chain "118405222-,118406223-";
chr11	juncbase	jcn_only_AD	65479916	65480237	.	+	.	gene_id "jcn_only_AD.124"; transcript_id "jcn_only_AD.124"; gene_name "CUFF.1381"; flanks "65479916-,65480237^"; structure "1^,2^"; splice_chain "65479916^,65480068^";
chr11	juncbase	intron_retention	10821637	10821156	.	-	.	gene_id "intron_retention.134"; transcript_id "intron_retention.134"; gene_name ""; flanks "10821637-,10821156^"; structure "0,1^2-"; splice_chain ",10821637^10821156-";
chr11	juncbase	jcn_only_AA	1775368	1776136	.	-	.	gene_id "jcn_only_AA.114"; transcript_id "jcn_only_AA.114"; gene_name "CUFF.1323"; flanks "1775368-,1776136^"; structure "1-,2-"; splice_chain "1775485-,1775368-";
chr11	juncbase	alternative_donor	830713	831224	.	+	.	gene_id "alternative_donor.74"; transcript_id "alternative_donor.74"; gene_name "CUFF.1318"; flanks "830713-,831224^"; structure "1^,2^"; splice_chain "830713^,831032^";
chr11	juncbase	cassette	10827454	10825965	.	-	.	gene_id "cassette.92"; transcript_id "cassette.92"; gene_name "CUFF.1349"; flanks "10827454-,10825965^"; structure "0,1-2^"; splice_chain ",10826562-10826460^";
chr11	juncbase	intron_retention	124757254	124757109	.	-	.	gene_id "intron_retention.135"; transcript_id "intron_retention.135"; gene_name "CUFF.1432"; flanks "124757254-,124757109^"; structure "0,1^2-"; splice_chain ",124757254^124757109-";
chr11	juncbase	jcn_only_AD	10829081	10828928	.	-	.	gene_id "jcn_only_AD.125"; transcript_id "jcn_only_AD.125"; gene_name ""; flanks "10829081-,10828928^"; structure "1^,2^"; splice_chain "10829096^,10829081^";
chr11	juncbase	jcn_only_AD	10829721	10828928	.	-	.	gene_id "jcn_only_AD.126"; transcript_id "jcn_only_AD.126"; gene_name ""; flanks "10829721-,10828928^"; structure "1^,2^"; splice_chain "10829721^,10829096^";
chr11	juncbase	jcn_only_AD	10829292	10828928	.	-	.	gene_id "jcn_only_AD.127"; transcript_id "jcn_only_AD.127"; gene_name ""; flanks "10829292-,10828928^"; structure "1^,2^"; splice_chain "10829292^,10829096^";
chr11	juncbase	cassette	118403176	118404572	.	+	.	gene_id "cassette.93"; transcript_id "cassette.93"; gene_name "CUFF.1417"; flanks "118403176-,118404572^"; structure "0,1-2^"; splice_chain ",118403632-118403922^";
chr11	juncbase	cassette	118403176	118404135	.	+	.	gene_id "cassette.94"; transcript_id "cassette.94"; gene_name "CUFF.1417"; flanks "118403176-,118404135^"; structure "0,1-2^"; splice_chain ",118403632-118403922^";
chr11	juncbase	alternative_acceptor	8941997	8947010	.	-	.	gene_id "alternative_acceptor.78"; transcript_id "alternative_acceptor.78"; gene_name "CUFF.1347"; flanks "8941997-,8947010^"; structure "1-,2-"; splice_chain "8943062-,8941997-";
chr11	juncbase	intron_retention	827318	828260	.	+	.	gene_id "intron_retention.136"; transcript_id "intron_retention.136"; gene_name "CUFF.1318"; flanks "827318-,828260^"; structure "0,1^2-"; splice_chain ",827318^828260-";
chr11	juncbase	alternative_donor	8615630	8486369	.	-	.	gene_id "alternative_donor.75"; transcript_id "alternative_donor.75"; gene_name "CUFF.1339"; flanks "8615630-,8486369^"; structure "1^,2^"; splice_chain "8615630^,8494710^";
chr11	juncbase	alternative_donor	119058367	119058649	.	+	.	gene_id "alternative_donor.76"; transcript_id "alternative_donor.76"; gene_name "CUFF.1426"; flanks "119058367-,119058649^"; structure "1^,2^"; splice_chain "119058367^,119058409^";
chr11	juncbase	intron_retention	115267609	115267987	.	+	.	gene_id "intron_retention.137"; transcript_id "intron_retention.137"; gene_name "CUFF.1411"; flanks "115267609-,115267987^"; structure "0,1^2-"; splice_chain ",115267609^115267987-";
chr11	juncbase	intron_retention	830132	830250	.	+	.	gene_id "intron_retention.138"; transcript_id "intron_retention.138"; gene_name "CUFF.1318"; flanks "830132-,830250^"; structure "0,1^2-"; splice_chain ",830132^830250-";
chr11	juncbase	jcn_only_AA	119056661	119057325	.	+	.	gene_id "jcn_only_AA.115"; transcript_id "jcn_only_AA.115"; gene_name ""; flanks "119056661-,119057325^"; structure "1-,2-"; splice_chain "119056801-,119057325-";
chr11	juncbase	intron_retention	119058853	119059064	.	+	.	gene_id "intron_retention.139"; transcript_id "intron_retention.139"; gene_name "CUFF.1426"; flanks "119058853-,119059064^"; structure "0,1^2-"; splice_chain ",119058853^119059064-";
chr11	juncbase	intron_retention	5686886	5686625	.	-	.	gene_id "intron_retention.140"; transcript_id "intron_retention.140"; gene_name "CUFF.1335"; flanks "5686886-,5686625^"; structure "0,1^2-"; splice_chain ",5686886^5686625-";
chr11	juncbase	jcn_only_AA	119056337	119056631	.	+	.	gene_id "jcn_only_AA.116"; transcript_id "jcn_only_AA.116"; gene_name ""; flanks "119056337-,119056631^"; structure "1-,2-"; splice_chain "119056558-,119056631-";
chr11	juncbase	intron_retention	117070148	117070349	.	+	.	gene_id "intron_retention.141"; transcript_id "intron_retention.141"; gene_name "CUFF.1412"; flanks "117070148-,117070349^"; structure "0,1^2-"; splice_chain ",117070148^117070349-";
chr11	juncbase	intron_retention	118402914	118403050	.	+	.	gene_id "intron_retention.142"; transcript_id "intron_retention.142"; gene_name ""; flanks "118402914-,118403050^"; structure "0,1^2-"; splice_chain ",118402914^118403050-";
chr11	juncbase	cassette	63670630	63672258	.	+	.	gene_id "cassette.95"; transcript_id "cassette.95"; gene_name "CUFF.1374"; flanks "63670630-,63672258^"; structure "0,1-2^"; splice_chain ",63671458-63671619^";
chr11	juncbase	intron_retention	118402586	118402865	.	+	.	gene_id "intron_retention.143"; transcript_id "intron_retention.143"; gene_name ""; flanks "118402586-,118402865^"; structure "0,1^2-"; splice_chain ",118402586^118402865-";
chr11	juncbase	intron_retention	61595696	61595967	.	+	.	gene_id "intron_retention.144"; transcript_id "intron_retention.144"; gene_name ""; flanks "61595696-,61595967^"; structure "0,1^2-"; splice_chain ",61595696^61595967-";
chr11	juncbase	jcn_only_AA	117070148	117073718	.	+	.	gene_id "jcn_only_AA.117"; transcript_id "jcn_only_AA.117"; gene_name "CUFF.1318,CUFF.1412"; flanks "117070148-,117073718^"; structure "1-,2-"; splice_chain "117070349-,117073718-";
chr11	juncbase	intron_retention	2189096	2188715	.	-	.	gene_id "intron_retention.145"; transcript_id "intron_retention.145"; gene_name "CUFF.1325"; flanks "2189096-,2188715^"; structure "0,1^2-"; splice_chain ",2189096^2188715-";
chr11	juncbase	jcn_only_AA	2905140	2905229	.	-	.	gene_id "jcn_only_AA.118"; transcript_id "jcn_only_AA.118"; gene_name "CUFF.1327"; flanks "2905140-,2905229^"; structure "1-,2-"; splice_chain "2905145-,2905140-";
chr11	juncbase	alternative_donor	10821791	10821303	.	-	.	gene_id "alternative_donor.77"; transcript_id "alternative_donor.77"; gene_name "CUFF.1349"; flanks "10821791-,10821303^"; structure "1^,2^"; splice_chain "10821791^,10821637^";
chr11	juncbase	alternative_acceptor	827711	828260	.	+	.	gene_id "alternative_acceptor.79"; transcript_id "alternative_acceptor.79"; gene_name ""; flanks "827711-,828260^"; structure "1-,2-"; splice_chain "828230-,828260-";
chr11	juncbase	jcn_only_AD	36475656	36483892	.	+	.	gene_id "jcn_only_AD.128"; transcript_id "jcn_only_AD.128"; gene_name ""; flanks "36475656-,36483892^"; structure "1^,2^"; splice_chain "36475656^,36476996^";
chr11	juncbase	jcn_only_AD	36476368	36483892	.	+	.	gene_id "jcn_only_AD.129"; transcript_id "jcn_only_AD.129"; gene_name ""; flanks "36476368-,36483892^"; structure "1^,2^"; splice_chain "36476368^,36476996^";
chr11	juncbase	alternative_donor	94706453	94705357	.	-	.	gene_id "alternative_donor.78"; transcript_id "alternative_donor.78"; gene_name "CUFF.1402"; flanks "94706453-,94705357^"; structure "1^,2^"; splice_chain "94706662^,94706453^";
chr11	juncbase	alternative_donor	94706437	94705357	.	-	.	gene_id "alternative_donor.79"; transcript_id "alternative_donor.79"; gene_name "CUFF.1402"; flanks "94706437-,94705357^"; structure "1^,2^"; splice_chain "94706662^,94706437^";
chr11	juncbase	alternative_donor	407852	407568	.	-	.	gene_id "alternative_donor.80"; transcript_id "alternative_donor.80"; gene_name ""; flanks "407852-,407568^"; structure "1^,2^"; splice_chain "407852^,407817^";
chr11	juncbase	jcn_only_AD	6633605	6633049	.	-	.	gene_id "jcn_only_AD.130"; transcript_id "jcn_only_AD.130"; gene_name ""; flanks "6633605-,6633049^"; structure "1^,2^"; splice_chain "6633605^,6633189^";
chr11	juncbase	cassette	77899619	77885629	.	-	.	gene_id "cassette.96"; transcript_id "cassette.96"; gene_name "CUFF.1397"; flanks "77899619-,77885629^"; structure "0,1-2^"; splice_chain ",77889031-77888785^";
chr11	juncbase	intron_retention	10829824	10828928	.	-	.	gene_id "intron_retention.146"; transcript_id "intron_retention.146"; gene_name "CUFF.1349"; flanks "10829824-,10828928^"; structure "0,1^2-"; splice_chain ",10829824^10828928-";
chr11	juncbase	alternative_acceptor	67786362	67786639	.	+	.	gene_id "alternative_acceptor.80"; transcript_id "alternative_acceptor.80"; gene_name "CUFF.1381,CUFF.1387"; flanks "67786362-,67786639^"; structure "1-,2-"; splice_chain "67786535-,67786639-";
chr11	juncbase	alternative_acceptor	36415561	36415946	.	+	.	gene_id "alternative_acceptor.81"; transcript_id "alternative_acceptor.81"; gene_name ""; flanks "36415561-,36415946^"; structure "1-,2-"; splice_chain "36415946-,36422547-";
chr11	juncbase	alternative_acceptor	36415561	36417664	.	+	.	gene_id "alternative_acceptor.82"; transcript_id "alternative_acceptor.82"; gene_name ""; flanks "36415561-,36417664^"; structure "1-,2-"; splice_chain "36417664-,36422547-";
chr11	juncbase	intron_retention	10821791	10821715	.	-	.	gene_id "intron_retention.147"; transcript_id "intron_retention.147"; gene_name ""; flanks "10821791-,10821715^"; structure "0,1^2-"; splice_chain ",10821791^10821715-";
chr11	juncbase	alternative_donor	119246934	119244231	.	-	.	gene_id "alternative_donor.81"; transcript_id "alternative_donor.81"; gene_name ""; flanks "119246934-,119244231^"; structure "1^,2^"; splice_chain "119249717^,119246934^";
chr11	juncbase	alternative_donor	119252183	119244231	.	-	.	gene_id "alternative_donor.82"; transcript_id "alternative_donor.82"; gene_name ""; flanks "119252183-,119244231^"; structure "1^,2^"; splice_chain "119252183^,119249717^";
chr11	juncbase	alternative_acceptor	119056661	119057325	.	+	.	gene_id "alternative_acceptor.83"; transcript_id "alternative_acceptor.83"; gene_name ""; flanks "119056661-,119057325^"; structure "1-,2-"; splice_chain "119056801-,119057325-";
chr11	juncbase	intron_retention	5686399	5685403	.	-	.	gene_id "intron_retention.148"; transcript_id "intron_retention.148"; gene_name "CUFF.1335"; flanks "5686399-,5685403^"; structure "0,1^2-"; splice_chain ",5686399^5685403-";
chr11	juncbase	jcn_only_AD	124767484	124767157	.	-	.	gene_id "jcn_only_AD.131"; transcript_id "jcn_only_AD.131"; gene_name "CUFF.1432"; flanks "124767484-,124767157^"; structure "1^,2^"; splice_chain "124768294^,124767484^";
chr11	juncbase	jcn_only_AD	124767622	124767157	.	-	.	gene_id "jcn_only_AD.132"; transcript_id "jcn_only_AD.132"; gene_name "CUFF.1432"; flanks "124767622-,124767157^"; structure "1^,2^"; splice_chain "124768294^,124767622^";
chr11	juncbase	alternative_acceptor	117070148	117073718	.	+	.	gene_id "alternative_acceptor.84"; transcript_id "alternative_acceptor.84"; gene_name "CUFF.1318,CUFF.1412"; flanks "117070148-,117073718^"; structure "1-,2-"; splice_chain "117070349-,117073718-";
chr11	juncbase	alternative_acceptor	64000086	64000176	.	+	.	gene_id "alternative_acceptor.85"; transcript_id "alternative_acceptor.85"; gene_name "CUFF.1357,CUFF.1376"; flanks "64000086-,64000176^"; structure "1-,2-"; splice_chain "64000173-,64000176-";
chr11	juncbase	jcn_only_AA	827459	828260	.	+	.	gene_id "jcn_only_AA.119"; transcript_id "jcn_only_AA.119"; gene_name ""; flanks "827459-,828260^"; structure "1-,2-"; splice_chain "828230-,828260-";
chr11	juncbase	cassette	65480529	65481064	.	+	.	gene_id "cassette.97"; transcript_id "cassette.97"; gene_name "CUFF.1381"; flanks "65480529-,65481064^"; structure "0,1-2^"; splice_chain ",65480819-65480974^";
chr11	juncbase	alternative_donor	8587257	8502161	.	-	.	gene_id "alternative_donor.83"; transcript_id "alternative_donor.83"; gene_name ""; flanks "8587257-,8502161^"; structure "1^,2^"; splice_chain "8615630^,8587257^";
chr11	juncbase	alternative_donor	8615291	8502161	.	-	.	gene_id "alternative_donor.84"; transcript_id "alternative_donor.84"; gene_name ""; flanks "8615291-,8502161^"; structure "1^,2^"; splice_chain "8615630^,8615291^";
chr11	juncbase	intron_retention	107975629	107976934	.	+	.	gene_id "intron_retention.149"; transcript_id "intron_retention.149"; gene_name ""; flanks "107975629-,107976934^"; structure "0,1^2-"; splice_chain ",107975629^107976934-";
chr11	juncbase	intron_retention	18477625	18478219	.	+	.	gene_id "intron_retention.150"; transcript_id "intron_retention.150"; gene_name "CUFF.1352"; flanks "18477625-,18478219^"; structure "0,1^2-"; splice_chain ",18477625^18478219-";
chr11	juncbase	jcn_only_AA	61584168	61605250	.	+	.	gene_id "jcn_only_AA.120"; transcript_id "jcn_only_AA.120"; gene_name "CUFF.1357"; flanks "61584168-,61605250^"; structure "1-,2-"; splice_chain "61588853-,61605250-";
chr11	juncbase	alternative_acceptor	119291096	119291579	.	-	.	gene_id "alternative_acceptor.86"; transcript_id "alternative_acceptor.86"; gene_name "CUFF.1424"; flanks "119291096-,119291579^"; structure "1-,2-"; splice_chain "119291096-,119291088-";
chr11	juncbase	alternative_acceptor	119291045	119291579	.	-	.	gene_id "alternative_acceptor.87"; transcript_id "alternative_acceptor.87"; gene_name "CUFF.1424"; flanks "119291045-,119291579^"; structure "1-,2-"; splice_chain "119291088-,119291045-";
chr11	juncbase	alternative_acceptor	119291158	119291579	.	-	.	gene_id "alternative_acceptor.88"; transcript_id "alternative_acceptor.88"; gene_name "CUFF.1424"; flanks "119291158-,119291579^"; structure "1-,2-"; splice_chain "119291158-,119291088-";
chr11	juncbase	intron_retention	118402316	118402490	.	+	.	gene_id "intron_retention.151"; transcript_id "intron_retention.151"; gene_name "CUFF.1417"; flanks "118402316-,118402490^"; structure "0,1^2-"; splice_chain ",118402316^118402490-";
chr11	juncbase	jcn_only_AD	61560500	61593504	.	+	.	gene_id "jcn_only_AD.133"; transcript_id "jcn_only_AD.133"; gene_name "CUFF.1367"; flanks "61560500-,61593504^"; structure "1^,2^"; splice_chain "61560500^,61583898^";
chr11	juncbase	intron_retention	119056219	119056634	.	+	.	gene_id "intron_retention.152"; transcript_id "intron_retention.152"; gene_name "CUFF.1426"; flanks "119056219-,119056634^"; structure "0,1^2-"; splice_chain ",119056219^119056634-";
chr11	juncbase	intron_retention	94704141	94703260	.	-	.	gene_id "intron_retention.153"; transcript_id "intron_retention.153"; gene_name "CUFF.1402"; flanks "94704141-,94703260^"; structure "0,1^2-"; splice_chain ",94704141^94703260-";
chr11	juncbase	intron_retention	119290761	119290230	.	-	.	gene_id "intron_retention.154"; transcript_id "intron_retention.154"; gene_name "CUFF.1424"; flanks "119290761-,119290230^"; structure "0,1^2-"; splice_chain ",119290761^119290230-";
chr11	juncbase	intron_retention	119229941	119229844	.	-	.	gene_id "intron_retention.155"; transcript_id "intron_retention.155"; gene_name "CUFF.1424"; flanks "119229941-,119229844^"; structure "0,1^2-"; splice_chain ",119229941^119229844-";
chr11	juncbase	jcn_only_AA	119291096	119291579	.	-	.	gene_id "jcn_only_AA.121"; transcript_id "jcn_only_AA.121"; gene_name "CUFF.1424"; flanks "119291096-,119291579^"; structure "1-,2-"; splice_chain "119291096-,119291088-";
chr11	juncbase	jcn_only_AA	119291045	119291579	.	-	.	gene_id "jcn_only_AA.122"; transcript_id "jcn_only_AA.122"; gene_name "CUFF.1424"; flanks "119291045-,119291579^"; structure "1-,2-"; splice_chain "119291088-,119291045-";
chr11	juncbase	jcn_only_AA	119291158	119291579	.	-	.	gene_id "jcn_only_AA.123"; transcript_id "jcn_only_AA.123"; gene_name "CUFF.1424"; flanks "119291158-,119291579^"; structure "1-,2-"; splice_chain "119291158-,119291088-";
chr11	juncbase	alternative_acceptor	75514562	75522469	.	-	.	gene_id "alternative_acceptor.89"; transcript_id "alternative_acceptor.89"; gene_name "CUFF.1395"; flanks "75514562-,75522469^"; structure "1-,2-"; splice_chain "75514770-,75514562-";
chr11	juncbase	alternative_acceptor	75520419	75522469	.	-	.	gene_id "alternative_acceptor.90"; transcript_id "alternative_acceptor.90"; gene_name "CUFF.1395"; flanks "75520419-,75522469^"; structure "1-,2-"; splice_chain "75520419-,75514770-";
chr11	juncbase	intron_retention	118402586	118403005	.	+	.	gene_id "intron_retention.156"; transcript_id "intron_retention.156"; gene_name ""; flanks "118402586-,118403005^"; structure "0,1^2-"; splice_chain ",118402586^118403005-";
chr11	juncbase	alternative_acceptor	124766951	124768294	.	-	.	gene_id "alternative_acceptor.91"; transcript_id "alternative_acceptor.91"; gene_name ""; flanks "124766951-,124768294^"; structure "1-,2-"; splice_chain "124767157-,124766951-";
chr11	juncbase	jcn_only_AA	558766	558856	.	-	.	gene_id "jcn_only_AA.124"; transcript_id "jcn_only_AA.124"; gene_name "CUFF.1317"; flanks "558766-,558856^"; structure "1-,2-"; splice_chain "558784-,558766-";
chr11	juncbase	cassette	63672515	63676349	.	+	.	gene_id "cassette.98"; transcript_id "cassette.98"; gene_name "CUFF.1374"; flanks "63672515-,63676349^"; structure "0,1-2^"; splice_chain ",63675732-63675776^";
chr11	juncbase	cassette	63673586	63676349	.	+	.	gene_id "cassette.99"; transcript_id "cassette.99"; gene_name "CUFF.1374"; flanks "63673586-,63676349^"; structure "0,1-2^"; splice_chain ",63675732-63675776^";
chr11	juncbase	intron_retention	407425	407164	.	-	.	gene_id "intron_retention.157"; transcript_id "intron_retention.157"; gene_name ""; flanks "407425-,407164^"; structure "0,1^2-"; splice_chain ",407425^407164-";
chr11	juncbase	jcn_only_AA	64000086	64000176	.	+	.	gene_id "jcn_only_AA.125"; transcript_id "jcn_only_AA.125"; gene_name "CUFF.1357,CUFF.1376"; flanks "64000086-,64000176^"; structure "1-,2-"; splice_chain "64000173-,64000176-";
chr11	juncbase	intron_retention	117073888	117074023	.	+	.	gene_id "intron_retention.158"; transcript_id "intron_retention.158"; gene_name ""; flanks "117073888-,117074023^"; structure "0,1^2-"; splice_chain ",117073888^117074023-";
chr11	juncbase	jcn_only_AA	61583898	61605250	.	+	.	gene_id "jcn_only_AA.126"; transcript_id "jcn_only_AA.126"; gene_name ""; flanks "61583898-,61605250^"; structure "1-,2-"; splice_chain "61593504-,61605250-";
chr11	juncbase	intron_retention	61608003	61608096	.	+	.	gene_id "intron_retention.159"; transcript_id "intron_retention.159"; gene_name "CUFF.1367"; flanks "61608003-,61608096^"; structure "0,1^2-"; splice_chain ",61608003^61608096-";
chr11	juncbase	alternative_donor	8502081	8496363	.	-	.	gene_id "alternative_donor.85"; transcript_id "alternative_donor.85"; gene_name ""; flanks "8502081-,8496363^"; structure "1^,2^"; splice_chain "8615291^,8502081^";
chr11	juncbase	alternative_donor	8588798	8496363	.	-	.	gene_id "alternative_donor.86"; transcript_id "alternative_donor.86"; gene_name ""; flanks "8588798-,8496363^"; structure "1^,2^"; splice_chain "8615291^,8588798^";
chr11	juncbase	intron_retention	65480068	65480237	.	+	.	gene_id "intron_retention.160"; transcript_id "intron_retention.160"; gene_name ""; flanks "65480068-,65480237^"; structure "0,1^2-"; splice_chain ",65480068^65480237-";
chr11	juncbase	jcn_only_AA	61608197	61615631	.	+	.	gene_id "jcn_only_AA.127"; transcript_id "jcn_only_AA.127"; gene_name "CUFF.1318,CUFF.1367"; flanks "61608197-,61615631^"; structure "1-,2-"; splice_chain "61615293-,61615631-";
chr11	juncbase	jcn_only_AD	117072657	117073718	.	+	.	gene_id "jcn_only_AD.134"; transcript_id "jcn_only_AD.134"; gene_name "CUFF.1412"; flanks "117072657-,117073718^"; structure "1^,2^"; splice_chain "117070545^,117072657^";
chr11	juncbase	jcn_only_AD	117071058	117073718	.	+	.	gene_id "jcn_only_AD.135"; transcript_id "jcn_only_AD.135"; gene_name "CUFF.1412"; flanks "117071058-,117073718^"; structure "1^,2^"; splice_chain "117070545^,117071058^";
chr11	juncbase	jcn_only_AD	117070148	117073718	.	+	.	gene_id "jcn_only_AD.136"; transcript_id "jcn_only_AD.136"; gene_name "CUFF.1412"; flanks "117070148-,117073718^"; structure "1^,2^"; splice_chain "117070148^,117070545^";
chr11	juncbase	alternative_acceptor	826266	828260	.	+	.	gene_id "alternative_acceptor.92"; transcript_id "alternative_acceptor.92"; gene_name "CUFF.1318,CUFF.1426"; flanks "826266-,828260^"; structure "1-,2-"; splice_chain "828230-,828260-";
chr11	juncbase	jcn_only_AA	119056219	119056634	.	+	.	gene_id "jcn_only_AA.128"; transcript_id "jcn_only_AA.128"; gene_name "CUFF.1426"; flanks "119056219-,119056634^"; structure "1-,2-"; splice_chain "119056558-,119056634-";
chr11	juncbase	jcn_only_AA	119056219	119056631	.	+	.	gene_id "jcn_only_AA.129"; transcript_id "jcn_only_AA.129"; gene_name "CUFF.1426"; flanks "119056219-,119056631^"; structure "1-,2-"; splice_chain "119056558-,119056631-";
chr11	juncbase	jcn_only_AA	63999436	63999902	.	+	.	gene_id "jcn_only_AA.130"; transcript_id "jcn_only_AA.130"; gene_name "CUFF.1376"; flanks "63999436-,63999902^"; structure "1-,2-"; splice_chain "63999866-,63999902-";
chr11	juncbase	jcn_only_AA	63999436	64001366	.	+	.	gene_id "jcn_only_AA.131"; transcript_id "jcn_only_AA.131"; gene_name "CUFF.1376"; flanks "63999436-,64001366^"; structure "1-,2-"; splice_chain "63999866-,64001366-";
chr11	juncbase	jcn_only_AA	63999436	63999982	.	+	.	gene_id "jcn_only_AA.132"; transcript_id "jcn_only_AA.132"; gene_name "CUFF.1376"; flanks "63999436-,63999982^"; structure "1-,2-"; splice_chain "63999866-,63999982-";
chr11	juncbase	cassette	8950924	8948721	.	-	.	gene_id "cassette.100"; transcript_id "cassette.100"; gene_name "CUFF.1347"; flanks "8950924-,8948721^"; structure "0,1-2^"; splice_chain ",8949255-8949050^";
chr11	juncbase	alternative_donor	8947010	8941997	.	-	.	gene_id "alternative_donor.87"; transcript_id "alternative_donor.87"; gene_name "CUFF.1347"; flanks "8947010-,8941997^"; structure "1^,2^"; splice_chain "8947010^,8942841^";
chr11	juncbase	alternative_acceptor	67820552	67820829	.	+	.	gene_id "alternative_acceptor.93"; transcript_id "alternative_acceptor.93"; gene_name ""; flanks "67820552-,67820829^"; structure "1-,2-"; splice_chain "67820826-,67820829-";
chr11	juncbase	jcn_only_AA	118402586	118402961	.	+	.	gene_id "jcn_only_AA.133"; transcript_id "jcn_only_AA.133"; gene_name ""; flanks "118402586-,118402961^"; structure "1-,2-"; splice_chain "118402961-,118403005-";
chr11	juncbase	jcn_only_AA	118402586	118403125	.	+	.	gene_id "jcn_only_AA.134"; transcript_id "jcn_only_AA.134"; gene_name ""; flanks "118402586-,118403125^"; structure "1-,2-"; splice_chain "118403005-,118403125-";
chr11	juncbase	jcn_only_AA	118402586	118402812	.	+	.	gene_id "jcn_only_AA.135"; transcript_id "jcn_only_AA.135"; gene_name ""; flanks "118402586-,118402812^"; structure "1-,2-"; splice_chain "118402812-,118403005-";
chr11	juncbase	intron_retention	62365799	62365613	.	-	.	gene_id "intron_retention.161"; transcript_id "intron_retention.161"; gene_name "CUFF.1370"; flanks "62365799-,62365613^"; structure "0,1^2-"; splice_chain ",62365799^62365613-";
chr11	juncbase	intron_retention	118925897	118925772	.	-	.	gene_id "intron_retention.162"; transcript_id "intron_retention.162"; gene_name "CUFF.1422"; flanks "118925897-,118925772^"; structure "0,1^2-"; splice_chain ",118925897^118925772-";
chr11	juncbase	cassette	63672515	63676349	.	+	.	gene_id "cassette.101"; transcript_id "cassette.101"; gene_name "CUFF.1374"; flanks "63672515-,63676349^"; structure "0,1-2^"; splice_chain ",63673560-63673586^";
chr11	juncbase	cassette	63672515	63675732	.	+	.	gene_id "cassette.102"; transcript_id "cassette.102"; gene_name "CUFF.1374"; flanks "63672515-,63675732^"; structure "0,1-2^"; splice_chain ",63673560-63673586^";
chr11	juncbase	intron_retention	828963	829360	.	+	.	gene_id "intron_retention.163"; transcript_id "intron_retention.163"; gene_name "CUFF.1318"; flanks "828963-,829360^"; structure "0,1^2-"; splice_chain ",828963^829360-";
chr11	juncbase	cassette	118403176	118404572	.	+	.	gene_id "cassette.103"; transcript_id "cassette.103"; gene_name "CUFF.1417"; flanks "118403176-,118404572^"; structure "0,1-2^"; splice_chain ",118404135-118404266^";
chr11	juncbase	cassette	118403922	118404572	.	+	.	gene_id "cassette.104"; transcript_id "cassette.104"; gene_name "CUFF.1417"; flanks "118403922-,118404572^"; structure "0,1-2^"; splice_chain ",118404135-118404266^";
chr11	juncbase	intron_retention	829540	829986	.	+	.	gene_id "intron_retention.164"; transcript_id "intron_retention.164"; gene_name "CUFF.1318"; flanks "829540-,829986^"; structure "0,1^2-"; splice_chain ",829540^829986-";
chr11	juncbase	jcn_only_AD	36397708	36440805	.	+	.	gene_id "jcn_only_AD.137"; transcript_id "jcn_only_AD.137"; gene_name "CUFF.1357"; flanks "36397708-,36440805^"; structure "1^,2^"; splice_chain "36397708^,36424928^";
chr11	juncbase	intron_retention	65479750	65479821	.	+	.	gene_id "intron_retention.165"; transcript_id "intron_retention.165"; gene_name "CUFF.1381"; flanks "65479750-,65479821^"; structure "0,1^2-"; splice_chain ",65479750^65479821-";
chr11	juncbase	alternative_acceptor	124767528	124767622	.	-	.	gene_id "alternative_acceptor.94"; transcript_id "alternative_acceptor.94"; gene_name "CUFF.1432"; flanks "124767528-,124767622^"; structure "1-,2-"; splice_chain "124767528-,124766951-";
chr11	juncbase	alternative_acceptor	124767157	124767622	.	-	.	gene_id "alternative_acceptor.95"; transcript_id "alternative_acceptor.95"; gene_name "CUFF.1432"; flanks "124767157-,124767622^"; structure "1-,2-"; splice_chain "124767157-,124766951-";
chr11	juncbase	alternative_donor	102962413	102960047	.	-	.	gene_id "alternative_donor.88"; transcript_id "alternative_donor.88"; gene_name "CUFF.1406"; flanks "102962413-,102960047^"; structure "1^,2^"; splice_chain "102962516^,102962413^";
chr11	juncbase	alternative_donor	102962245	102960047	.	-	.	gene_id "alternative_donor.89"; transcript_id "alternative_donor.89"; gene_name "CUFF.1406"; flanks "102962245-,102960047^"; structure "1^,2^"; splice_chain "102962516^,102962245^";
chr11	juncbase	jcn_only_AA	36317988	36422547	.	+	.	gene_id "jcn_only_AA.136"; transcript_id "jcn_only_AA.136"; gene_name ""; flanks "36317988-,36422547^"; structure "1-,2-"; splice_chain "36318921-,36422547-";
chr11	juncbase	intron_retention	10829292	10828928	.	-	.	gene_id "intron_retention.166"; transcript_id "intron_retention.166"; gene_name "CUFF.1349"; flanks "10829292-,10828928^"; structure "0,1^2-"; splice_chain ",10829292^10828928-";
chr11	juncbase	intron_retention	124078395	124078522	.	+	.	gene_id "intron_retention.167"; transcript_id "intron_retention.167"; gene_name "CUFF.1431"; flanks "124078395-,124078522^"; structure "0,1^2-"; splice_chain ",124078395^124078522-";
chr11	juncbase	cassette	118927786	118926555	.	-	.	gene_id "cassette.105"; transcript_id "cassette.105"; gene_name "CUFF.1422"; flanks "118927786-,118926555^"; structure "0,1-2^"; splice_chain ",118926879-118926782^";
chr11	juncbase	alternative_acceptor	107944224	107948903	.	+	.	gene_id "alternative_acceptor.96"; transcript_id "alternative_acceptor.96"; gene_name "CUFF.1410"; flanks "107944224-,107948903^"; structure "1-,2-"; splice_chain "107944527-,107948903-";
chr11	juncbase	cassette	8615291	8496613	.	-	.	gene_id "cassette.106"; transcript_id "cassette.106"; gene_name "CUFF.1344"; flanks "8615291-,8496613^"; structure "0,1-2^"; splice_chain ",8555043-8554895^";
chr11	juncbase	alternative_donor	2192927	2192000	.	-	.	gene_id "alternative_donor.90"; transcript_id "alternative_donor.90"; gene_name "CUFF.1424"; flanks "2192927-,2192000^"; structure "1^,2^"; splice_chain "2192927^,2192915^";
chr11	juncbase	alternative_acceptor	115267609	115267987	.	+	.	gene_id "alternative_acceptor.97"; transcript_id "alternative_acceptor.97"; gene_name "CUFF.1391,CUFF.1411"; flanks "115267609-,115267987^"; structure "1-,2-"; splice_chain "115267984-,115267987-";
chr11	juncbase	jcn_only_AA	63999436	63999866	.	+	.	gene_id "jcn_only_AA.137"; transcript_id "jcn_only_AA.137"; gene_name "CUFF.1376"; flanks "63999436-,63999866^"; structure "1-,2-"; splice_chain "63999866-,63999982-";
chr11	juncbase	jcn_only_AA	63999436	63999902	.	+	.	gene_id "jcn_only_AA.138"; transcript_id "jcn_only_AA.138"; gene_name "CUFF.1376"; flanks "63999436-,63999902^"; structure "1-,2-"; splice_chain "63999902-,63999982-";
chr11	juncbase	jcn_only_AA	63999436	64001366	.	+	.	gene_id "jcn_only_AA.139"; transcript_id "jcn_only_AA.139"; gene_name "CUFF.1376"; flanks "63999436-,64001366^"; structure "1-,2-"; splice_chain "63999982-,64001366-";
chr11	juncbase	intron_retention	3405514	3418347	.	+	.	gene_id "intron_retention.168"; transcript_id "intron_retention.168"; gene_name ""; flanks "3405514-,3418347^"; structure "0,1^2-"; splice_chain ",3405514^3418347-";
chr11	juncbase	intron_retention	829540	829968	.	+	.	gene_id "intron_retention.169"; transcript_id "intron_retention.169"; gene_name "CUFF.1318"; flanks "829540-,829968^"; structure "0,1^2-"; splice_chain ",829540^829968-";
chr11	juncbase	cassette	118920268	118919598	.	-	.	gene_id "cassette.107"; transcript_id "cassette.107"; gene_name "CUFF.1422"; flanks "118920268-,118919598^"; structure "0,1-2^"; splice_chain ",118919915-118919730^";
chr11	juncbase	intron_retention	65480391	65480303	.	-	.	gene_id "intron_retention.170"; transcript_id "intron_retention.170"; gene_name ""; flanks "65480391-,65480303^"; structure "0,1^2-"; splice_chain ",65480391^65480303-";
chr11	juncbase	intron_retention	102962413	102960038	.	-	.	gene_id "intron_retention.171"; transcript_id "intron_retention.171"; gene_name ""; flanks "102962413-,102960038^"; structure "0,1^2-"; splice_chain ",102962413^102960038-";
chr11	juncbase	cassette	77899619	77885629	.	-	.	gene_id "cassette.108"; transcript_id "cassette.108"; gene_name "CUFF.1397"; flanks "77899619-,77885629^"; structure "0,1-2^"; splice_chain ",77897862-77897727^";
chr11	juncbase	jcn_only_AD	119249717	119244231	.	-	.	gene_id "jcn_only_AD.138"; transcript_id "jcn_only_AD.138"; gene_name ""; flanks "119249717-,119244231^"; structure "1^,2^"; splice_chain "119249717^,119246934^";
chr11	juncbase	jcn_only_AD	119252183	119244231	.	-	.	gene_id "jcn_only_AD.139"; transcript_id "jcn_only_AD.139"; gene_name ""; flanks "119252183-,119244231^"; structure "1^,2^"; splice_chain "119252183^,119246934^";
chr11	juncbase	jcn_only_AD	117073888	117074023	.	+	.	gene_id "jcn_only_AD.140"; transcript_id "jcn_only_AD.140"; gene_name "CUFF.1412"; flanks "117073888-,117074023^"; structure "1^,2^"; splice_chain "117073888^,117073909^";
chr11	juncbase	intron_retention	59861031	59861437	.	+	.	gene_id "intron_retention.172"; transcript_id "intron_retention.172"; gene_name ""; flanks "59861031-,59861437^"; structure "0,1^2-"; splice_chain ",59861031^59861437-";
chr11	juncbase	jcn_only_AA	5701468	5706098	.	-	.	gene_id "jcn_only_AA.140"; transcript_id "jcn_only_AA.140"; gene_name ""; flanks "5701468-,5706098^"; structure "1-,2-"; splice_chain "5705369-,5701468-";
chr11	juncbase	jcn_only_AA	830713	831224	.	+	.	gene_id "jcn_only_AA.141"; transcript_id "jcn_only_AA.141"; gene_name "CUFF.1318"; flanks "830713-,831224^"; structure "1-,2-"; splice_chain "830866-,831224-";
chr11	juncbase	cassette	118926782	118926283	.	-	.	gene_id "cassette.109"; transcript_id "cassette.109"; gene_name "CUFF.1422"; flanks "118926782-,118926283^"; structure "0,1-2^"; splice_chain ",118926555-118926462^";
chr11	juncbase	alternative_donor	119252183	119230944	.	-	.	gene_id "alternative_donor.91"; transcript_id "alternative_donor.91"; gene_name "CUFF.1424"; flanks "119252183-,119230944^"; structure "1^,2^"; splice_chain "119252183^,119243417^";
chr11	juncbase	alternative_donor	119234559	119230944	.	-	.	gene_id "alternative_donor.92"; transcript_id "alternative_donor.92"; gene_name "CUFF.1424"; flanks "119234559-,119230944^"; structure "1^,2^"; splice_chain "119243417^,119234559^";
chr11	juncbase	alternative_acceptor	118401949	118402493	.	+	.	gene_id "alternative_acceptor.98"; transcript_id "alternative_acceptor.98"; gene_name "CUFF.1318,CUFF.1417"; flanks "118401949-,118402493^"; structure "1-,2-"; splice_chain "118402490-,118402493-";
chr11	juncbase	alternative_acceptor	102960038	102962413	.	-	.	gene_id "alternative_acceptor.99"; transcript_id "alternative_acceptor.99"; gene_name "CUFF.1406"; flanks "102960038-,102962413^"; structure "1-,2-"; splice_chain "102960047-,102960038-";
chr11	juncbase	cassette	3239789	3242800	.	+	.	gene_id "cassette.110"; transcript_id "cassette.110"; gene_name "CUFF.1329"; flanks "3239789-,3242800^"; structure "0,1-2^"; splice_chain ",3241457-3241589^";
chr11	juncbase	intron_retention	10828857	10827571	.	-	.	gene_id "intron_retention.173"; transcript_id "intron_retention.173"; gene_name ""; flanks "10828857-,10827571^"; structure "0,1^2-"; splice_chain ",10828857^10827571-";
chr11	juncbase	intron_retention	124756873	124756718	.	-	.	gene_id "intron_retention.174"; transcript_id "intron_retention.174"; gene_name "CUFF.1432"; flanks "124756873-,124756718^"; structure "0,1^2-"; splice_chain ",124756873^124756718-";
chr11	juncbase	intron_retention	830713	831224	.	+	.	gene_id "intron_retention.175"; transcript_id "intron_retention.175"; gene_name "CUFF.1318"; flanks "830713-,831224^"; structure "0,1^2-"; splice_chain ",830713^831224-";
chr11	juncbase	intron_retention	10828836	10827487	.	-	.	gene_id "intron_retention.176"; transcript_id "intron_retention.176"; gene_name ""; flanks "10828836-,10827487^"; structure "0,1^2-"; splice_chain ",10828836^10827487-";
chr11	juncbase	intron_retention	119056337	119056631	.	+	.	gene_id "intron_retention.177"; transcript_id "intron_retention.177"; gene_name ""; flanks "119056337-,119056631^"; structure "0,1^2-"; splice_chain ",119056337^119056631-";
chr11	juncbase	alternative_donor	117073888	117074023	.	+	.	gene_id "alternative_donor.93"; transcript_id "alternative_donor.93"; gene_name "CUFF.1412"; flanks "117073888-,117074023^"; structure "1^,2^"; splice_chain "117073888^,117073909^";
chr11	juncbase	alternative_donor	2906432	2905364	.	-	.	gene_id "alternative_donor.94"; transcript_id "alternative_donor.94"; gene_name "CUFF.1327"; flanks "2906432-,2905364^"; structure "1^,2^"; splice_chain "2906432^,2905900^";
chr11	juncbase	intron_retention	10821637	10821303	.	-	.	gene_id "intron_retention.178"; transcript_id "intron_retention.178"; gene_name "CUFF.1349"; flanks "10821637-,10821303^"; structure "0,1^2-"; splice_chain ",10821637^10821303-";
chr11	juncbase	alternative_acceptor	827459	828260	.	+	.	gene_id "alternative_acceptor.100"; transcript_id "alternative_acceptor.100"; gene_name ""; flanks "827459-,828260^"; structure "1-,2-"; splice_chain "828230-,828260-";
chr11	juncbase	jcn_only_AA	36415561	36415946	.	+	.	gene_id "jcn_only_AA.142"; transcript_id "jcn_only_AA.142"; gene_name "CUFF.1357"; flanks "36415561-,36415946^"; structure "1-,2-"; splice_chain "36415946-,36417664-";
chr11	juncbase	jcn_only_AA	36415561	36422547	.	+	.	gene_id "jcn_only_AA.143"; transcript_id "jcn_only_AA.143"; gene_name "CUFF.1357"; flanks "36415561-,36422547^"; structure "1-,2-"; splice_chain "36417664-,36422547-";
chr11	juncbase	jcn_only_AA	118405070	118416834	.	+	.	gene_id "jcn_only_AA.144"; transcript_id "jcn_only_AA.144"; gene_name "CUFF.1417"; flanks "118405070-,118416834^"; structure "1-,2-"; splice_chain "118405222-,118416834-";
chr11	juncbase	jcn_only_AA	118405070	118406223	.	+	.	gene_id "jcn_only_AA.145"; transcript_id "jcn_only_AA.145"; gene_name "CUFF.1417"; flanks "118405070-,118406223^"; structure "1-,2-"; splice_chain "118405222-,118406223-";
chr11	juncbase	jcn_only_AD	10827454	10823982	.	-	.	gene_id "jcn_only_AD.141"; transcript_id "jcn_only_AD.141"; gene_name ""; flanks "10827454-,10823982^"; structure "1^,2^"; splice_chain "10827454^,10824577^";
chr11	juncbase	jcn_only_AD	2192927	2192000	.	-	.	gene_id "jcn_only_AD.142"; transcript_id "jcn_only_AD.142"; gene_name "CUFF.1424"; flanks "2192927-,2192000^"; structure "1^,2^"; splice_chain "2192927^,2192915^";
chr11	juncbase	intron_retention	6632895	6632683	.	-	.	gene_id "intron_retention.179"; transcript_id "intron_retention.179"; gene_name ""; flanks "6632895-,6632683^"; structure "0,1^2-"; splice_chain ",6632895^6632683-";
chr11	juncbase	alternative_acceptor	1775368	1776136	.	-	.	gene_id "alternative_acceptor.101"; transcript_id "alternative_acceptor.101"; gene_name "CUFF.1323"; flanks "1775368-,1776136^"; structure "1-,2-"; splice_chain "1775485-,1775368-";
chr11	juncbase	intron_retention	64001452	64001545	.	+	.	gene_id "intron_retention.180"; transcript_id "intron_retention.180"; gene_name "CUFF.1376"; flanks "64001452-,64001545^"; structure "0,1^2-"; splice_chain ",64001452^64001545-";
chr11	juncbase	intron_retention	6640615	6640498	.	-	.	gene_id "intron_retention.181"; transcript_id "intron_retention.181"; gene_name "CUFF.1339"; flanks "6640615-,6640498^"; structure "0,1^2-"; splice_chain ",6640615^6640498-";
chr11	juncbase	alternative_donor	124767484	124767157	.	-	.	gene_id "alternative_donor.95"; transcript_id "alternative_donor.95"; gene_name "CUFF.1432"; flanks "124767484-,124767157^"; structure "1^,2^"; splice_chain "124768294^,124767484^";
chr11	juncbase	alternative_donor	124767622	124767157	.	-	.	gene_id "alternative_donor.96"; transcript_id "alternative_donor.96"; gene_name "CUFF.1432"; flanks "124767622-,124767157^"; structure "1^,2^"; splice_chain "124768294^,124767622^";
chr11	juncbase	cassette	104915119	104912446	.	-	.	gene_id "cassette.111"; transcript_id "cassette.111"; gene_name "CUFF.1409"; flanks "104915119-,104912446^"; structure "0,1-2^"; splice_chain ",104914272-104914210^";
chr11	juncbase	intron_retention	124757629	124757395	.	-	.	gene_id "intron_retention.182"; transcript_id "intron_retention.182"; gene_name "CUFF.1432"; flanks "124757629-,124757395^"; structure "0,1^2-"; splice_chain ",124757629^124757395-";
chr11	juncbase	cassette	3239789	3242800	.	+	.	gene_id "cassette.112"; transcript_id "cassette.112"; gene_name "CUFF.1329"; flanks "3239789-,3242800^"; structure "0,1-2^"; splice_chain ",3240930-3241018^";
chr11	juncbase	jcn_only_AD	8587257	8502161	.	-	.	gene_id "jcn_only_AD.143"; transcript_id "jcn_only_AD.143"; gene_name ""; flanks "8587257-,8502161^"; structure "1^,2^"; splice_chain "8615630^,8587257^";
chr11	juncbase	jcn_only_AD	8615291	8502161	.	-	.	gene_id "jcn_only_AD.144"; transcript_id "jcn_only_AD.144"; gene_name ""; flanks "8615291-,8502161^"; structure "1^,2^"; splice_chain "8615630^,8615291^";
chr11	juncbase	intron_retention	5686886	5685403	.	-	.	gene_id "intron_retention.183"; transcript_id "intron_retention.183"; gene_name "CUFF.1335"; flanks "5686886-,5685403^"; structure "0,1^2-"; splice_chain ",5686886^5685403-";
chr11	juncbase	intron_retention	118402548	118403063	.	+	.	gene_id "intron_retention.184"; transcript_id "intron_retention.184"; gene_name ""; flanks "118402548-,118403063^"; structure "0,1^2-"; splice_chain ",118402548^118403063-";
chr11	juncbase	jcn_only_AD	119243417	119230944	.	-	.	gene_id "jcn_only_AD.145"; transcript_id "jcn_only_AD.145"; gene_name ""; flanks "119243417-,119230944^"; structure "1^,2^"; splice_chain "119252183^,119243417^";
chr11	juncbase	jcn_only_AD	119234559	119230944	.	-	.	gene_id "jcn_only_AD.146"; transcript_id "jcn_only_AD.146"; gene_name ""; flanks "119234559-,119230944^"; structure "1^,2^"; splice_chain "119252183^,119234559^";
chr11	juncbase	intron_retention	119056219	119056631	.	+	.	gene_id "intron_retention.185"; transcript_id "intron_retention.185"; gene_name "CUFF.1426"; flanks "119056219-,119056631^"; structure "0,1^2-"; splice_chain ",119056219^119056631-";
chr11	juncbase	intron_retention	5706246	5701468	.	-	.	gene_id "intron_retention.186"; transcript_id "intron_retention.186"; gene_name "CUFF.1335"; flanks "5706246-,5701468^"; structure "0,1^2-"; splice_chain ",5706246^5701468-";
chr11	juncbase	alternative_acceptor	8950975	8953689	.	-	.	gene_id "alternative_acceptor.102"; transcript_id "alternative_acceptor.102"; gene_name "CUFF.1347"; flanks "8950975-,8953689^"; structure "1-,2-"; splice_chain "8951080-,8950975-";
chr11	juncbase	intron_retention	119056219	119056558	.	+	.	gene_id "intron_retention.187"; transcript_id "intron_retention.187"; gene_name "CUFF.1426"; flanks "119056219-,119056558^"; structure "0,1^2-"; splice_chain ",119056219^119056558-";
chr11	juncbase	cassette	119293823	119291096	.	-	.	gene_id "cassette.113"; transcript_id "cassette.113"; gene_name "CUFF.1424"; flanks "119293823-,119291096^"; structure "0,1-2^"; splice_chain ",119291639-119291579^";
chr11	juncbase	jcn_only_AD	119056219	119056631	.	+	.	gene_id "jcn_only_AD.147"; transcript_id "jcn_only_AD.147"; gene_name "CUFF.1426"; flanks "119056219-,119056631^"; structure "1^,2^"; splice_chain "119056219^,119056337^";
chr11	juncbase	cassette	94707232	94730188	.	+	.	gene_id "cassette.114"; transcript_id "cassette.114"; gene_name "CUFF.1403"; flanks "94707232-,94730188^"; structure "0,1-2^"; splice_chain ",94708818-94708912^";
chr11	juncbase	alternative_donor	406349	406059	.	-	.	gene_id "alternative_donor.97"; transcript_id "alternative_donor.97"; gene_name "CUFF.1316"; flanks "406349-,406059^"; structure "1^,2^"; splice_chain "406349^,406142^";
chr11	juncbase	intron_retention	63999436	63999866	.	+	.	gene_id "intron_retention.188"; transcript_id "intron_retention.188"; gene_name ""; flanks "63999436-,63999866^"; structure "0,1^2-"; splice_chain ",63999436^63999866-";
chr11	juncbase	alternative_acceptor	5701468	5706098	.	-	.	gene_id "alternative_acceptor.103"; transcript_id "alternative_acceptor.103"; gene_name ""; flanks "5701468-,5706098^"; structure "1-,2-"; splice_chain "5705369-,5701468-";
chr11	juncbase	cassette	414823	408206	.	-	.	gene_id "cassette.115"; transcript_id "cassette.115"; gene_name "CUFF.1316"; flanks "414823-,408206^"; structure "0,1-2^"; splice_chain ",408893-408695^";
chr11	juncbase	cassette	409868	408206	.	-	.	gene_id "cassette.116"; transcript_id "cassette.116"; gene_name "CUFF.1316"; flanks "409868-,408206^"; structure "0,1-2^"; splice_chain ",408893-408695^";
chr11	juncbase	jcn_only_AD	65480526	65480819	.	+	.	gene_id "jcn_only_AD.148"; transcript_id "jcn_only_AD.148"; gene_name "CUFF.1381"; flanks "65480526-,65480819^"; structure "1^,2^"; splice_chain "65480526^,65480529^";
chr11	juncbase	intron_retention	2187710	2187288	.	-	.	gene_id "intron_retention.189"; transcript_id "intron_retention.189"; gene_name "CUFF.1325"; flanks "2187710-,2187288^"; structure "0,1^2-"; splice_chain ",2187710^2187288-";
chr11	juncbase	intron_retention	59856134	59856223	.	+	.	gene_id "intron_retention.190"; transcript_id "intron_retention.190"; gene_name "CUFF.1366"; flanks "59856134-,59856223^"; structure "0,1^2-"; splice_chain ",59856134^59856223-";
chr11	juncbase	cassette	77888785	77885629	.	-	.	gene_id "cassette.117"; transcript_id "cassette.117"; gene_name "CUFF.1397"; flanks "77888785-,77885629^"; structure "0,1-2^"; splice_chain ",77888031-77887934^";
chr11	juncbase	intron_retention	124766828	124766566	.	-	.	gene_id "intron_retention.191"; transcript_id "intron_retention.191"; gene_name "CUFF.1432"; flanks "124766828-,124766566^"; structure "0,1^2-"; splice_chain ",124766828^124766566-";
chr11	juncbase	alternative_donor	117070545	117073718	.	+	.	gene_id "alternative_donor.98"; transcript_id "alternative_donor.98"; gene_name "CUFF.1412"; flanks "117070545-,117073718^"; structure "1^,2^"; splice_chain "117070545^,117072657^";
chr11	juncbase	alternative_donor	117071058	117073718	.	+	.	gene_id "alternative_donor.99"; transcript_id "alternative_donor.99"; gene_name "CUFF.1412"; flanks "117071058-,117073718^"; structure "1^,2^"; splice_chain "117071058^,117072657^";
chr11	juncbase	alternative_donor	117070148	117073718	.	+	.	gene_id "alternative_donor.100"; transcript_id "alternative_donor.100"; gene_name "CUFF.1412"; flanks "117070148-,117073718^"; structure "1^,2^"; splice_chain "117070148^,117072657^";
chr11	juncbase	alternative_acceptor	10821156	10821637	.	-	.	gene_id "alternative_acceptor.104"; transcript_id "alternative_acceptor.104"; gene_name "CUFF.1349"; flanks "10821156-,10821637^"; structure "1-,2-"; splice_chain "10821303-,10821156-";
chr11	juncbase	alternative_acceptor	124766951	124767622	.	-	.	gene_id "alternative_acceptor.105"; transcript_id "alternative_acceptor.105"; gene_name "CUFF.1432"; flanks "124766951-,124767622^"; structure "1-,2-"; splice_chain "124767157-,124766951-";
chr11	juncbase	alternative_acceptor	124767528	124767622	.	-	.	gene_id "alternative_acceptor.106"; transcript_id "alternative_acceptor.106"; gene_name "CUFF.1432"; flanks "124767528-,124767622^"; structure "1-,2-"; splice_chain "124767528-,124767157-";
chr11	juncbase	cassette	3423959	3424823	.	+	.	gene_id "cassette.118"; transcript_id "cassette.118"; gene_name "CUFF.1331"; flanks "3423959-,3424823^"; structure "0,1-2^"; splice_chain ",3424145-3424186^";
chr11	juncbase	jcn_only_AA	10828866	10830252	.	-	.	gene_id "jcn_only_AA.146"; transcript_id "jcn_only_AA.146"; gene_name ""; flanks "10828866-,10830252^"; structure "1-,2-"; splice_chain "10830055-,10828866-";
chr11	juncbase	intron_retention	10825446	10825137	.	-	.	gene_id "intron_retention.192"; transcript_id "intron_retention.192"; gene_name "CUFF.1349"; flanks "10825446-,10825137^"; structure "0,1^2-"; splice_chain ",10825446^10825137-";
chr11	juncbase	jcn_only_AA	61514595	61514823	.	-	.	gene_id "jcn_only_AA.147"; transcript_id "jcn_only_AA.147"; gene_name "CUFF.1368"; flanks "61514595-,61514823^"; structure "1-,2-"; splice_chain "61514613-,61514595-";
chr11	juncbase	alternative_donor	63998412	63999343	.	+	.	gene_id "alternative_donor.101"; transcript_id "alternative_donor.101"; gene_name "CUFF.1376"; flanks "63998412-,63999343^"; structure "1^,2^"; splice_chain "63998412^,63998619^";
chr11	juncbase	cassette	5688919	5686912	.	-	.	gene_id "cassette.119"; transcript_id "cassette.119"; gene_name "CUFF.1335"; flanks "5688919-,5686912^"; structure "0,1-2^"; splice_chain ",5687311-5687211^";
chr11	juncbase	cassette	2192915	2191101	.	-	.	gene_id "cassette.120"; transcript_id "cassette.120"; gene_name "CUFF.1325"; flanks "2192915-,2191101^"; structure "0,1-2^"; splice_chain ",2192000-2191920^";
chr11	juncbase	cassette	2192927	2191101	.	-	.	gene_id "cassette.121"; transcript_id "cassette.121"; gene_name "CUFF.1325"; flanks "2192927-,2191101^"; structure "0,1-2^"; splice_chain ",2192000-2191920^";
chr11	juncbase	jcn_only_AA	10821303	10821791	.	-	.	gene_id "jcn_only_AA.148"; transcript_id "jcn_only_AA.148"; gene_name "CUFF.1349"; flanks "10821303-,10821791^"; structure "1-,2-"; splice_chain "10821715-,10821303-";
chr11	juncbase	jcn_only_AA	119290141	119290761	.	-	.	gene_id "jcn_only_AA.149"; transcript_id "jcn_only_AA.149"; gene_name "CUFF.1424"; flanks "119290141-,119290761^"; structure "1-,2-"; splice_chain "119290230-,119290141-";
chr11	juncbase	alternative_acceptor	61514595	61514823	.	-	.	gene_id "alternative_acceptor.107"; transcript_id "alternative_acceptor.107"; gene_name "CUFF.1368"; flanks "61514595-,61514823^"; structure "1-,2-"; splice_chain "61514613-,61514595-";
chr11	juncbase	alternative_acceptor	65481319	65482131	.	+	.	gene_id "alternative_acceptor.108"; transcript_id "alternative_acceptor.108"; gene_name ""; flanks "65481319-,65482131^"; structure "1-,2-"; splice_chain "65481966-,65482131-";
chr11	juncbase	jcn_only_AA	67820552	67820829	.	+	.	gene_id "jcn_only_AA.150"; transcript_id "jcn_only_AA.150"; gene_name ""; flanks "67820552-,67820829^"; structure "1-,2-"; splice_chain "67820826-,67820829-";
chr11	juncbase	alternative_donor	117070545	117073718	.	+	.	gene_id "alternative_donor.102"; transcript_id "alternative_donor.102"; gene_name "CUFF.1412"; flanks "117070545-,117073718^"; structure "1^,2^"; splice_chain "117070545^,117071058^";
chr11	juncbase	alternative_donor	117072657	117073718	.	+	.	gene_id "alternative_donor.103"; transcript_id "alternative_donor.103"; gene_name "CUFF.1412"; flanks "117072657-,117073718^"; structure "1^,2^"; splice_chain "117071058^,117072657^";
chr11	juncbase	alternative_donor	117070148	117073718	.	+	.	gene_id "alternative_donor.104"; transcript_id "alternative_donor.104"; gene_name "CUFF.1412"; flanks "117070148-,117073718^"; structure "1^,2^"; splice_chain "117070148^,117071058^";
chr11	juncbase	jcn_only_AA	118402586	118402961	.	+	.	gene_id "jcn_only_AA.151"; transcript_id "jcn_only_AA.151"; gene_name ""; flanks "118402586-,118402961^"; structure "1-,2-"; splice_chain "118402961-,118403125-";
chr11	juncbase	jcn_only_AA	118402586	118402812	.	+	.	gene_id "jcn_only_AA.152"; transcript_id "jcn_only_AA.152"; gene_name ""; flanks "118402586-,118402812^"; structure "1-,2-"; splice_chain "118402812-,118403125-";
chr11	juncbase	jcn_only_AA	118402586	118403005	.	+	.	gene_id "jcn_only_AA.153"; transcript_id "jcn_only_AA.153"; gene_name ""; flanks "118402586-,118403005^"; structure "1-,2-"; splice_chain "118403005-,118403125-";
chr11	juncbase	jcn_only_AA	8496613	8502081	.	-	.	gene_id "jcn_only_AA.154"; transcript_id "jcn_only_AA.154"; gene_name ""; flanks "8496613-,8502081^"; structure "1-,2-"; splice_chain "8496613-,8496363-";
chr11	juncbase	jcn_only_AA	8498830	8502081	.	-	.	gene_id "jcn_only_AA.155"; transcript_id "jcn_only_AA.155"; gene_name ""; flanks "8498830-,8502081^"; structure "1-,2-"; splice_chain "8498830-,8496363-";
chr11	juncbase	intron_retention	8615630	8486369	.	-	.	gene_id "intron_retention.193"; transcript_id "intron_retention.193"; gene_name ""; flanks "8615630-,8486369^"; structure "0,1^2-"; splice_chain ",8615630^8486369-";
chr11	juncbase	intron_retention	10821099	10820971	.	-	.	gene_id "intron_retention.194"; transcript_id "intron_retention.194"; gene_name "CUFF.1349"; flanks "10821099-,10820971^"; structure "0,1^2-"; splice_chain ",10821099^10820971-";
chr11	juncbase	jcn_only_AD	8587257	8502161	.	-	.	gene_id "jcn_only_AD.149"; transcript_id "jcn_only_AD.149"; gene_name ""; flanks "8587257-,8502161^"; structure "1^,2^"; splice_chain "8615291^,8587257^";
chr11	juncbase	jcn_only_AD	8615630	8502161	.	-	.	gene_id "jcn_only_AD.150"; transcript_id "jcn_only_AD.150"; gene_name ""; flanks "8615630-,8502161^"; structure "1^,2^"; splice_chain "8615630^,8615291^";
chr11	juncbase	alternative_donor	94706437	94705357	.	-	.	gene_id "alternative_donor.105"; transcript_id "alternative_donor.105"; gene_name "CUFF.1402"; flanks "94706437-,94705357^"; structure "1^,2^"; splice_chain "94706453^,94706437^";
chr11	juncbase	alternative_donor	94706662	94705357	.	-	.	gene_id "alternative_donor.106"; transcript_id "alternative_donor.106"; gene_name "CUFF.1402"; flanks "94706662-,94705357^"; structure "1^,2^"; splice_chain "94706662^,94706453^";
chr11	juncbase	intron_retention	118402586	118402812	.	+	.	gene_id "intron_retention.195"; transcript_id "intron_retention.195"; gene_name ""; flanks "118402586-,118402812^"; structure "0,1^2-"; splice_chain ",118402586^118402812-";
chr11	juncbase	jcn_only_AA	6623445	6624634	.	-	.	gene_id "jcn_only_AA.156"; transcript_id "jcn_only_AA.156"; gene_name "CUFF.1340"; flanks "6623445-,6624634^"; structure "1-,2-"; splice_chain "6623445-,6622005-";
chr11	juncbase	jcn_only_AA	6623494	6624634	.	-	.	gene_id "jcn_only_AA.157"; transcript_id "jcn_only_AA.157"; gene_name "CUFF.1340"; flanks "6623494-,6624634^"; structure "1-,2-"; splice_chain "6623494-,6622005-";
chr11	juncbase	intron_retention	10823208	10822634	.	-	.	gene_id "intron_retention.196"; transcript_id "intron_retention.196"; gene_name ""; flanks "10823208-,10822634^"; structure "0,1^2-"; splice_chain ",10823208^10822634-";
chr11	juncbase	alternative_donor	8615630	8474453	.	-	.	gene_id "alternative_donor.107"; transcript_id "alternative_donor.107"; gene_name ""; flanks "8615630-,8474453^"; structure "1^,2^"; splice_chain "8615630^,8476291^";
chr11	juncbase	alternative_donor	67772277	67771268	.	-	.	gene_id "alternative_donor.108"; transcript_id "alternative_donor.108"; gene_name "CUFF.1340,CUFF.1386"; flanks "67772277-,67771268^"; structure "1^,2^"; splice_chain "67772277^,67771418^";
chr11	juncbase	jcn_only_AA	63998412	63999343	.	+	.	gene_id "jcn_only_AA.158"; transcript_id "jcn_only_AA.158"; gene_name "CUFF.1376"; flanks "63998412-,63999343^"; structure "1-,2-"; splice_chain "63998504-,63999343-";
chr11	juncbase	intron_retention	63999436	63999982	.	+	.	gene_id "intron_retention.197"; transcript_id "intron_retention.197"; gene_name ""; flanks "63999436-,63999982^"; structure "0,1^2-"; splice_chain ",63999436^63999982-";
chr11	juncbase	alternative_donor	3427840	3428852	.	+	.	gene_id "alternative_donor.109"; transcript_id "alternative_donor.109"; gene_name "CUFF.1331"; flanks "3427840-,3428852^"; structure "1^,2^"; splice_chain "3427840^,3427945^";
chr11	juncbase	jcn_only_AA	8496363	8502081	.	-	.	gene_id "jcn_only_AA.159"; transcript_id "jcn_only_AA.159"; gene_name ""; flanks "8496363-,8502081^"; structure "1-,2-"; splice_chain "8498830-,8496363-";
chr11	juncbase	jcn_only_AA	8496613	8502081	.	-	.	gene_id "jcn_only_AA.160"; transcript_id "jcn_only_AA.160"; gene_name ""; flanks "8496613-,8502081^"; structure "1-,2-"; splice_chain "8498830-,8496613-";
chr11	juncbase	jcn_only_AD	407852	407568	.	-	.	gene_id "jcn_only_AD.151"; transcript_id "jcn_only_AD.151"; gene_name ""; flanks "407852-,407568^"; structure "1^,2^"; splice_chain "407852^,407817^";
chr11	juncbase	cassette	8474369	8457686	.	-	.	gene_id "cassette.122"; transcript_id "cassette.122"; gene_name "CUFF.1344"; flanks "8474369-,8457686^"; structure "0,1-2^"; splice_chain ",8462300-8462225^";
chr11	juncbase	jcn_only_AA	104915385	104916018	.	-	.	gene_id "jcn_only_AA.161"; transcript_id "jcn_only_AA.161"; gene_name "CUFF.1409"; flanks "104915385-,104916018^"; structure "1-,2-"; splice_chain "104915658-,104915385-";
chr11	juncbase	jcn_only_AD	8947010	8941997	.	-	.	gene_id "jcn_only_AD.152"; transcript_id "jcn_only_AD.152"; gene_name "CUFF.1347"; flanks "8947010-,8941997^"; structure "1^,2^"; splice_chain "8947010^,8942841^";
chr11	juncbase	intron_retention	67771127	67770645	.	-	.	gene_id "intron_retention.198"; transcript_id "intron_retention.198"; gene_name "CUFF.1386"; flanks "67771127-,67770645^"; structure "0,1^2-"; splice_chain ",67771127^67770645-";
chr11	juncbase	intron_retention	75524648	75522614	.	-	.	gene_id "intron_retention.199"; transcript_id "intron_retention.199"; gene_name "CUFF.1395"; flanks "75524648-,75522614^"; structure "0,1^2-"; splice_chain ",75524648^75522614-";
chr11	juncbase	alternative_donor	8615291	8496363	.	-	.	gene_id "alternative_donor.110"; transcript_id "alternative_donor.110"; gene_name ""; flanks "8615291-,8496363^"; structure "1^,2^"; splice_chain "8615291^,8502081^";
chr11	juncbase	alternative_donor	8588798	8496363	.	-	.	gene_id "alternative_donor.111"; transcript_id "alternative_donor.111"; gene_name ""; flanks "8588798-,8496363^"; structure "1^,2^"; splice_chain "8588798^,8502081^";
chr11	juncbase	intron_retention	118926462	118926283	.	-	.	gene_id "intron_retention.200"; transcript_id "intron_retention.200"; gene_name ""; flanks "118926462-,118926283^"; structure "0,1^2-"; splice_chain ",118926462^118926283-";
chr11	juncbase	intron_retention	118402586	118402961	.	+	.	gene_id "intron_retention.201"; transcript_id "intron_retention.201"; gene_name ""; flanks "118402586-,118402961^"; structure "0,1^2-"; splice_chain ",118402586^118402961-";
chr11	juncbase	alternative_acceptor	36415561	36422547	.	+	.	gene_id "alternative_acceptor.109"; transcript_id "alternative_acceptor.109"; gene_name "CUFF.1357"; flanks "36415561-,36422547^"; structure "1-,2-"; splice_chain "36415946-,36422547-";
chr11	juncbase	alternative_acceptor	36415561	36417664	.	+	.	gene_id "alternative_acceptor.110"; transcript_id "alternative_acceptor.110"; gene_name "CUFF.1357"; flanks "36415561-,36417664^"; structure "1-,2-"; splice_chain "36415946-,36417664-";
chr11	juncbase	jcn_only_AA	119056219	119056634	.	+	.	gene_id "jcn_only_AA.162"; transcript_id "jcn_only_AA.162"; gene_name "CUFF.1426"; flanks "119056219-,119056634^"; structure "1-,2-"; splice_chain "119056631-,119056634-";
chr11	juncbase	jcn_only_AA	119056219	119056558	.	+	.	gene_id "jcn_only_AA.163"; transcript_id "jcn_only_AA.163"; gene_name "CUFF.1426"; flanks "119056219-,119056558^"; structure "1-,2-"; splice_chain "119056558-,119056631-";
chr11	juncbase	cassette	5686886	5685403	.	-	.	gene_id "cassette.123"; transcript_id "cassette.123"; gene_name "CUFF.1335"; flanks "5686886-,5685403^"; structure "0,1-2^"; splice_chain ",5686625-5686399^";
chr11	juncbase	alternative_donor	117072657	117073718	.	+	.	gene_id "alternative_donor.112"; transcript_id "alternative_donor.112"; gene_name "CUFF.1412"; flanks "117072657-,117073718^"; structure "1^,2^"; splice_chain "117070545^,117072657^";
chr11	juncbase	alternative_donor	117071058	117073718	.	+	.	gene_id "alternative_donor.113"; transcript_id "alternative_donor.113"; gene_name "CUFF.1412"; flanks "117071058-,117073718^"; structure "1^,2^"; splice_chain "117070545^,117071058^";
chr11	juncbase	alternative_donor	117070148	117073718	.	+	.	gene_id "alternative_donor.114"; transcript_id "alternative_donor.114"; gene_name "CUFF.1412"; flanks "117070148-,117073718^"; structure "1^,2^"; splice_chain "117070148^,117070545^";
chr11	juncbase	alternative_acceptor	829540	829986	.	+	.	gene_id "alternative_acceptor.111"; transcript_id "alternative_acceptor.111"; gene_name "CUFF.1318"; flanks "829540-,829986^"; structure "1-,2-"; splice_chain "829968-,829986-";
chr11	juncbase	alternative_donor	61560500	61593504	.	+	.	gene_id "alternative_donor.115"; transcript_id "alternative_donor.115"; gene_name "CUFF.1367"; flanks "61560500-,61593504^"; structure "1^,2^"; splice_chain "61560500^,61583898^";
chr11	juncbase	alternative_donor	6638590	6637734	.	-	.	gene_id "alternative_donor.116"; transcript_id "alternative_donor.116"; gene_name ""; flanks "6638590-,6637734^"; structure "1^,2^"; splice_chain "6638590^,6637892^";
chr11	juncbase	intron_retention	2906432	2905364	.	-	.	gene_id "intron_retention.202"; transcript_id "intron_retention.202"; gene_name "CUFF.1327"; flanks "2906432-,2905364^"; structure "0,1^2-"; splice_chain ",2906432^2905364-";
chr11	juncbase	intron_retention	406843	406538	.	-	.	gene_id "intron_retention.203"; transcript_id "intron_retention.203"; gene_name ""; flanks "406843-,406538^"; structure "0,1^2-"; splice_chain ",406843^406538-";
chr11	juncbase	jcn_only_AD	828963	829360	.	+	.	gene_id "jcn_only_AD.153"; transcript_id "jcn_only_AD.153"; gene_name "CUFF.1318"; flanks "828963-,829360^"; structure "1^,2^"; splice_chain "828963^,829183^";
chr11	juncbase	intron_retention	10825684	10825597	.	-	.	gene_id "intron_retention.204"; transcript_id "intron_retention.204"; gene_name "CUFF.1349"; flanks "10825684-,10825597^"; structure "0,1^2-"; splice_chain ",10825684^10825597-";
chr11	juncbase	jcn_only_AA	67790229	67793477	.	+	.	gene_id "jcn_only_AA.164"; transcript_id "jcn_only_AA.164"; gene_name "CUFF.1387"; flanks "67790229-,67793477^"; structure "1-,2-"; splice_chain "67791676-,67793477-";
chr11	juncbase	cassette	102936998	102933143	.	-	.	gene_id "cassette.124"; transcript_id "cassette.124"; gene_name "CUFF.1406"; flanks "102936998-,102933143^"; structure "0,1-2^"; splice_chain ",102935106-102935004^";
chr11	juncbase	jcn_only_AD	117070545	117073718	.	+	.	gene_id "jcn_only_AD.154"; transcript_id "jcn_only_AD.154"; gene_name "CUFF.1412"; flanks "117070545-,117073718^"; structure "1^,2^"; splice_chain "117070545^,117072657^";
chr11	juncbase	jcn_only_AD	117071058	117073718	.	+	.	gene_id "jcn_only_AD.155"; transcript_id "jcn_only_AD.155"; gene_name "CUFF.1412"; flanks "117071058-,117073718^"; structure "1^,2^"; splice_chain "117071058^,117072657^";
chr11	juncbase	jcn_only_AD	117070148	117073718	.	+	.	gene_id "jcn_only_AD.156"; transcript_id "jcn_only_AD.156"; gene_name "CUFF.1412"; flanks "117070148-,117073718^"; structure "1^,2^"; splice_chain "117070148^,117072657^";
chr11	juncbase	intron_retention	62365082	62364887	.	-	.	gene_id "intron_retention.205"; transcript_id "intron_retention.205"; gene_name "CUFF.1370"; flanks "62365082-,62364887^"; structure "0,1^2-"; splice_chain ",62365082^62364887-";
chr11	juncbase	cassette	101852695	101863509	.	+	.	gene_id "cassette.125"; transcript_id "cassette.125"; gene_name "CUFF.1404"; flanks "101852695-,101863509^"; structure "0,1-2^"; splice_chain ",101857563-101857772^";
chr11	juncbase	alternative_acceptor	119056219	119056558	.	+	.	gene_id "alternative_acceptor.112"; transcript_id "alternative_acceptor.112"; gene_name "CUFF.1426"; flanks "119056219-,119056558^"; structure "1-,2-"; splice_chain "119056558-,119056634-";
chr11	juncbase	alternative_acceptor	119056219	119056631	.	+	.	gene_id "alternative_acceptor.113"; transcript_id "alternative_acceptor.113"; gene_name "CUFF.1426"; flanks "119056219-,119056631^"; structure "1-,2-"; splice_chain "119056631-,119056634-";
chr11	juncbase	cassette	36424928	36453403	.	+	.	gene_id "cassette.126"; transcript_id "cassette.126"; gene_name "CUFF.1357"; flanks "36424928-,36453403^"; structure "0,1-2^"; splice_chain ",36440805-36440853^";
chr11	juncbase	intron_retention	65479750	65479850	.	+	.	gene_id "intron_retention.206"; transcript_id "intron_retention.206"; gene_name "CUFF.1381"; flanks "65479750-,65479850^"; structure "0,1^2-"; splice_chain ",65479750^65479850-";
chr11	juncbase	jcn_only_AA	119291088	119291579	.	-	.	gene_id "jcn_only_AA.165"; transcript_id "jcn_only_AA.165"; gene_name "CUFF.1424"; flanks "119291088-,119291579^"; structure "1-,2-"; splice_chain "119291096-,119291088-";
chr11	juncbase	jcn_only_AA	119291045	119291579	.	-	.	gene_id "jcn_only_AA.166"; transcript_id "jcn_only_AA.166"; gene_name "CUFF.1424"; flanks "119291045-,119291579^"; structure "1-,2-"; splice_chain "119291096-,119291045-";
chr11	juncbase	jcn_only_AA	119291158	119291579	.	-	.	gene_id "jcn_only_AA.167"; transcript_id "jcn_only_AA.167"; gene_name "CUFF.1424"; flanks "119291158-,119291579^"; structure "1-,2-"; splice_chain "119291158-,119291096-";
chr11	juncbase	alternative_donor	104915918	104915385	.	-	.	gene_id "alternative_donor.117"; transcript_id "alternative_donor.117"; gene_name ""; flanks "104915918-,104915385^"; structure "1^,2^"; splice_chain "104916018^,104915918^";
chr11	juncbase	alternative_donor	104972135	104915385	.	-	.	gene_id "alternative_donor.118"; transcript_id "alternative_donor.118"; gene_name ""; flanks "104972135-,104915385^"; structure "1^,2^"; splice_chain "104972135^,104916018^";
chr11	juncbase	cassette	36467990	36483892	.	+	.	gene_id "cassette.127"; transcript_id "cassette.127"; gene_name "CUFF.1357"; flanks "36467990-,36483892^"; structure "0,1-2^"; splice_chain ",36472759-36472885^";
chr11	juncbase	alternative_acceptor	119290141	119290761	.	-	.	gene_id "alternative_acceptor.114"; transcript_id "alternative_acceptor.114"; gene_name "CUFF.1424"; flanks "119290141-,119290761^"; structure "1-,2-"; splice_chain "119290230-,119290141-";
chr11	juncbase	jcn_only_AD	6638590	6637734	.	-	.	gene_id "jcn_only_AD.157"; transcript_id "jcn_only_AD.157"; gene_name ""; flanks "6638590-,6637734^"; structure "1^,2^"; splice_chain "6638590^,6637892^";
chr11	juncbase	alternative_donor	8615291	8502161	.	-	.	gene_id "alternative_donor.119"; transcript_id "alternative_donor.119"; gene_name ""; flanks "8615291-,8502161^"; structure "1^,2^"; splice_chain "8615291^,8587257^";
chr11	juncbase	alternative_donor	8615630	8502161	.	-	.	gene_id "alternative_donor.120"; transcript_id "alternative_donor.120"; gene_name ""; flanks "8615630-,8502161^"; structure "1^,2^"; splice_chain "8615630^,8587257^";
chr11	juncbase	alternative_acceptor	36415561	36415946	.	+	.	gene_id "alternative_acceptor.115"; transcript_id "alternative_acceptor.115"; gene_name "CUFF.1357"; flanks "36415561-,36415946^"; structure "1-,2-"; splice_chain "36415946-,36417664-";
chr11	juncbase	alternative_acceptor	36415561	36422547	.	+	.	gene_id "alternative_acceptor.116"; transcript_id "alternative_acceptor.116"; gene_name "CUFF.1357"; flanks "36415561-,36422547^"; structure "1-,2-"; splice_chain "36417664-,36422547-";
chr11	juncbase	jcn_only_AA	107944224	107948903	.	+	.	gene_id "jcn_only_AA.168"; transcript_id "jcn_only_AA.168"; gene_name "CUFF.1410"; flanks "107944224-,107948903^"; structure "1-,2-"; splice_chain "107944527-,107948903-";
chr11	juncbase	intron_retention	3405514	3422989	.	+	.	gene_id "intron_retention.207"; transcript_id "intron_retention.207"; gene_name ""; flanks "3405514-,3422989^"; structure "0,1^2-"; splice_chain ",3405514^3422989-";
chr11	juncbase	jcn_only_AD	119056874	119057188	.	+	.	gene_id "jcn_only_AD.158"; transcript_id "jcn_only_AD.158"; gene_name "CUFF.1426"; flanks "119056874-,119057188^"; structure "1^,2^"; splice_chain "119056874^,119056950^";
chr11	juncbase	intron_retention	10830429	10830290	.	-	.	gene_id "intron_retention.208"; transcript_id "intron_retention.208"; gene_name ""; flanks "10830429-,10830290^"; structure "0,1^2-"; splice_chain ",10830429^10830290-";
chr11	juncbase	jcn_only_AA	67766775	67766989	.	-	.	gene_id "jcn_only_AA.169"; transcript_id "jcn_only_AA.169"; gene_name "CUFF.1386"; flanks "67766775-,67766989^"; structure "1-,2-"; splice_chain "67766845-,67766775-";
chr11	juncbase	alternative_acceptor	558766	558856	.	-	.	gene_id "alternative_acceptor.117"; transcript_id "alternative_acceptor.117"; gene_name "CUFF.1317"; flanks "558766-,558856^"; structure "1-,2-"; splice_chain "558784-,558766-";
chr11	juncbase	alternative_acceptor	8496613	8498797	.	-	.	gene_id "alternative_acceptor.118"; transcript_id "alternative_acceptor.118"; gene_name ""; flanks "8496613-,8498797^"; structure "1-,2-"; splice_chain "8498298-,8496613-";
chr11	juncbase	alternative_acceptor	61608197	61615631	.	+	.	gene_id "alternative_acceptor.119"; transcript_id "alternative_acceptor.119"; gene_name "CUFF.1318,CUFF.1367"; flanks "61608197-,61615631^"; structure "1-,2-"; splice_chain "61615293-,61615631-";
chr11	juncbase	jcn_only_AD	2192927	2190925	.	-	.	gene_id "jcn_only_AD.159"; transcript_id "jcn_only_AD.159"; gene_name ""; flanks "2192927-,2190925^"; structure "1^,2^"; splice_chain "2192927^,2192915^";
chr11	juncbase	intron_retention	6636673	6636560	.	-	.	gene_id "intron_retention.209"; transcript_id "intron_retention.209"; gene_name "CUFF.1339"; flanks "6636673-,6636560^"; structure "0,1^2-"; splice_chain ",6636673^6636560-";
chr11	juncbase	alternative_donor	8587257	8502161	.	-	.	gene_id "alternative_donor.121"; transcript_id "alternative_donor.121"; gene_name ""; flanks "8587257-,8502161^"; structure "1^,2^"; splice_chain "8615291^,8587257^";
chr11	juncbase	alternative_donor	8615630	8502161	.	-	.	gene_id "alternative_donor.122"; transcript_id "alternative_donor.122"; gene_name ""; flanks "8615630-,8502161^"; structure "1^,2^"; splice_chain "8615630^,8615291^";
chr11	juncbase	jcn_only_AA	8496363	8502081	.	-	.	gene_id "jcn_only_AA.170"; transcript_id "jcn_only_AA.170"; gene_name ""; flanks "8496363-,8502081^"; structure "1-,2-"; splice_chain "8496613-,8496363-";
chr11	juncbase	jcn_only_AA	8498830	8502081	.	-	.	gene_id "jcn_only_AA.171"; transcript_id "jcn_only_AA.171"; gene_name ""; flanks "8498830-,8502081^"; structure "1-,2-"; splice_chain "8498830-,8496613-";
chr11	juncbase	intron_retention	67764243	67758833	.	-	.	gene_id "intron_retention.210"; transcript_id "intron_retention.210"; gene_name "CUFF.1386"; flanks "67764243-,67758833^"; structure "0,1^2-"; splice_chain ",67764243^67758833-";
chr11	juncbase	alternative_acceptor	75522581	75524648	.	-	.	gene_id "alternative_acceptor.120"; transcript_id "alternative_acceptor.120"; gene_name "CUFF.1395"; flanks "75522581-,75524648^"; structure "1-,2-"; splice_chain "75522614-,75522581-";
chr11	juncbase	jcn_only_AD	36397708	36398179	.	+	.	gene_id "jcn_only_AD.160"; transcript_id "jcn_only_AD.160"; gene_name ""; flanks "36397708-,36398179^"; structure "1^,2^"; splice_chain "36397708^,36397787^";
chr11	juncbase	jcn_only_AA	6623445	6624634	.	-	.	gene_id "jcn_only_AA.172"; transcript_id "jcn_only_AA.172"; gene_name "CUFF.1340"; flanks "6623445-,6624634^"; structure "1-,2-"; splice_chain "6623494-,6623445-";
chr11	juncbase	jcn_only_AA	6622005	6624634	.	-	.	gene_id "jcn_only_AA.173"; transcript_id "jcn_only_AA.173"; gene_name "CUFF.1340"; flanks "6622005-,6624634^"; structure "1-,2-"; splice_chain "6623494-,6622005-";
chr11	juncbase	cassette	118550248	118533905	.	-	.	gene_id "cassette.128"; transcript_id "cassette.128"; gene_name "CUFF.1418"; flanks "118550248-,118533905^"; structure "0,1-2^"; splice_chain ",118534148-118534048^";
chr11	juncbase	jcn_only_AA	102937296	102953985	.	-	.	gene_id "jcn_only_AA.174"; transcript_id "jcn_only_AA.174"; gene_name "CUFF.1406"; flanks "102937296-,102953985^"; structure "1-,2-"; splice_chain "102953568-,102937296-";
chr11	juncbase	jcn_only_AD	124767622	124767157	.	-	.	gene_id "jcn_only_AD.161"; transcript_id "jcn_only_AD.161"; gene_name "CUFF.1432"; flanks "124767622-,124767157^"; structure "1^,2^"; splice_chain "124767622^,124767484^";
chr11	juncbase	jcn_only_AD	124768294	124767157	.	-	.	gene_id "jcn_only_AD.162"; transcript_id "jcn_only_AD.162"; gene_name "CUFF.1432"; flanks "124768294-,124767157^"; structure "1^,2^"; splice_chain "124768294^,124767484^";
chr11	juncbase	intron_retention	65480305	65480393	.	+	.	gene_id "intron_retention.211"; transcript_id "intron_retention.211"; gene_name "CUFF.1381"; flanks "65480305-,65480393^"; structure "0,1^2-"; splice_chain ",65480305^65480393-";
chr11	juncbase	alternative_acceptor	119291088	119291579	.	-	.	gene_id "alternative_acceptor.121"; transcript_id "alternative_acceptor.121"; gene_name "CUFF.1424"; flanks "119291088-,119291579^"; structure "1-,2-"; splice_chain "119291158-,119291088-";
chr11	juncbase	alternative_acceptor	119291096	119291579	.	-	.	gene_id "alternative_acceptor.122"; transcript_id "alternative_acceptor.122"; gene_name "CUFF.1424"; flanks "119291096-,119291579^"; structure "1-,2-"; splice_chain "119291158-,119291096-";
chr11	juncbase	alternative_acceptor	119291045	119291579	.	-	.	gene_id "alternative_acceptor.123"; transcript_id "alternative_acceptor.123"; gene_name "CUFF.1424"; flanks "119291045-,119291579^"; structure "1-,2-"; splice_chain "119291158-,119291045-";
chr11	juncbase	intron_retention	63999436	63999902	.	+	.	gene_id "intron_retention.212"; transcript_id "intron_retention.212"; gene_name ""; flanks "63999436-,63999902^"; structure "0,1^2-"; splice_chain ",63999436^63999902-";
chr11	juncbase	intron_retention	67795524	67789000	.	-	.	gene_id "intron_retention.213"; transcript_id "intron_retention.213"; gene_name ""; flanks "67795524-,67789000^"; structure "0,1^2-"; splice_chain ",67795524^67789000-";
chr11	juncbase	intron_retention	119056661	119057325	.	+	.	gene_id "intron_retention.214"; transcript_id "intron_retention.214"; gene_name ""; flanks "119056661-,119057325^"; structure "0,1^2-"; splice_chain ",119056661^119057325-";
chr11	juncbase	jcn_only_AD	119056219	119056558	.	+	.	gene_id "jcn_only_AD.163"; transcript_id "jcn_only_AD.163"; gene_name "CUFF.1426"; flanks "119056219-,119056558^"; structure "1^,2^"; splice_chain "119056219^,119056337^";
chr11	juncbase	alternative_acceptor	8496363	8502081	.	-	.	gene_id "alternative_acceptor.124"; transcript_id "alternative_acceptor.124"; gene_name ""; flanks "8496363-,8502081^"; structure "1-,2-"; splice_chain "8496613-,8496363-";
chr11	juncbase	alternative_acceptor	8498830	8502081	.	-	.	gene_id "alternative_acceptor.125"; transcript_id "alternative_acceptor.125"; gene_name ""; flanks "8498830-,8502081^"; structure "1-,2-"; splice_chain "8498830-,8496613-";
chr11	juncbase	alternative_donor	119243417	119230944	.	-	.	gene_id "alternative_donor.123"; transcript_id "alternative_donor.123"; gene_name ""; flanks "119243417-,119230944^"; structure "1^,2^"; splice_chain "119252183^,119243417^";
chr11	juncbase	alternative_donor	119234559	119230944	.	-	.	gene_id "alternative_donor.124"; transcript_id "alternative_donor.124"; gene_name ""; flanks "119234559-,119230944^"; structure "1^,2^"; splice_chain "119252183^,119234559^";
chr11	juncbase	cassette	67786724	67788954	.	+	.	gene_id "cassette.129"; transcript_id "cassette.129"; gene_name "CUFF.1387"; flanks "67786724-,67788954^"; structure "0,1-2^"; splice_chain ",67787184-67787265^";
chr11	juncbase	alternative_donor	119056219	119056558	.	+	.	gene_id "alternative_donor.125"; transcript_id "alternative_donor.125"; gene_name "CUFF.1426"; flanks "119056219-,119056558^"; structure "1^,2^"; splice_chain "119056219^,119056337^";
chr11	juncbase	cassette	5699434	5687311	.	-	.	gene_id "cassette.130"; transcript_id "cassette.130"; gene_name "CUFF.1335"; flanks "5699434-,5687311^"; structure "0,1-2^"; splice_chain ",5688941-5688919^";
chr11	juncbase	alternative_donor	118927786	118927129	.	-	.	gene_id "alternative_donor.126"; transcript_id "alternative_donor.126"; gene_name "CUFF.1325"; flanks "118927786-,118927129^"; structure "1^,2^"; splice_chain "118927786^,118927731^";
chr11	juncbase	intron_retention	10821791	10821303	.	-	.	gene_id "intron_retention.215"; transcript_id "intron_retention.215"; gene_name "CUFF.1349"; flanks "10821791-,10821303^"; structure "0,1^2-"; splice_chain ",10821791^10821303-";
chr11	juncbase	alternative_donor	119243417	119230944	.	-	.	gene_id "alternative_donor.127"; transcript_id "alternative_donor.127"; gene_name "CUFF.1424"; flanks "119243417-,119230944^"; structure "1^,2^"; splice_chain "119243417^,119234559^";
chr11	juncbase	alternative_donor	119252183	119230944	.	-	.	gene_id "alternative_donor.128"; transcript_id "alternative_donor.128"; gene_name "CUFF.1424"; flanks "119252183-,119230944^"; structure "1^,2^"; splice_chain "119252183^,119234559^";
chr11	juncbase	jcn_only_AA	118402586	118403125	.	+	.	gene_id "jcn_only_AA.175"; transcript_id "jcn_only_AA.175"; gene_name ""; flanks "118402586-,118403125^"; structure "1-,2-"; splice_chain "118402961-,118403125-";
chr11	juncbase	jcn_only_AA	118402586	118402812	.	+	.	gene_id "jcn_only_AA.176"; transcript_id "jcn_only_AA.176"; gene_name ""; flanks "118402586-,118402812^"; structure "1-,2-"; splice_chain "118402812-,118402961-";
chr11	juncbase	jcn_only_AA	118402586	118403005	.	+	.	gene_id "jcn_only_AA.177"; transcript_id "jcn_only_AA.177"; gene_name ""; flanks "118402586-,118403005^"; structure "1-,2-"; splice_chain "118402961-,118403005-";
chr11	juncbase	alternative_acceptor	119056219	119056634	.	+	.	gene_id "alternative_acceptor.126"; transcript_id "alternative_acceptor.126"; gene_name "CUFF.1426"; flanks "119056219-,119056634^"; structure "1-,2-"; splice_chain "119056558-,119056634-";
chr11	juncbase	alternative_acceptor	119056219	119056631	.	+	.	gene_id "alternative_acceptor.127"; transcript_id "alternative_acceptor.127"; gene_name "CUFF.1426"; flanks "119056219-,119056631^"; structure "1-,2-"; splice_chain "119056558-,119056631-";
chr11	juncbase	jcn_only_AA	409101	409868	.	-	.	gene_id "jcn_only_AA.178"; transcript_id "jcn_only_AA.178"; gene_name ""; flanks "409101-,409868^"; structure "1-,2-"; splice_chain "409308-,409101-";
chr11	juncbase	alternative_acceptor	124766951	124767622	.	-	.	gene_id "alternative_acceptor.128"; transcript_id "alternative_acceptor.128"; gene_name "CUFF.1432"; flanks "124766951-,124767622^"; structure "1-,2-"; splice_chain "124767528-,124766951-";
chr11	juncbase	alternative_acceptor	124767157	124767622	.	-	.	gene_id "alternative_acceptor.129"; transcript_id "alternative_acceptor.129"; gene_name "CUFF.1432"; flanks "124767157-,124767622^"; structure "1-,2-"; splice_chain "124767528-,124767157-";
chr11	juncbase	jcn_only_AD	119249717	119244231	.	-	.	gene_id "jcn_only_AD.164"; transcript_id "jcn_only_AD.164"; gene_name ""; flanks "119249717-,119244231^"; structure "1^,2^"; splice_chain "119252183^,119249717^";
chr11	juncbase	jcn_only_AD	119246934	119244231	.	-	.	gene_id "jcn_only_AD.165"; transcript_id "jcn_only_AD.165"; gene_name ""; flanks "119246934-,119244231^"; structure "1^,2^"; splice_chain "119252183^,119246934^";
chr11	juncbase	intron_retention	62364109	62364004	.	-	.	gene_id "intron_retention.216"; transcript_id "intron_retention.216"; gene_name "CUFF.1370"; flanks "62364109-,62364004^"; structure "0,1^2-"; splice_chain ",62364109^62364004-";
chr11	juncbase	jcn_only_AD	102962516	102954055	.	-	.	gene_id "jcn_only_AD.166"; transcript_id "jcn_only_AD.166"; gene_name ""; flanks "102962516-,102954055^"; structure "1^,2^"; splice_chain "102962516^,102959956^";
chr11	juncbase	intron_retention	61630541	61630754	.	+	.	gene_id "intron_retention.217"; transcript_id "intron_retention.217"; gene_name ""; flanks "61630541-,61630754^"; structure "0,1^2-"; splice_chain ",61630541^61630754-";
chr11	juncbase	intron_retention	6633295	6632683	.	-	.	gene_id "intron_retention.218"; transcript_id "intron_retention.218"; gene_name ""; flanks "6633295-,6632683^"; structure "0,1^2-"; splice_chain ",6633295^6632683-";
chr11	juncbase	intron_retention	102962413	102960047	.	-	.	gene_id "intron_retention.219"; transcript_id "intron_retention.219"; gene_name ""; flanks "102962413-,102960047^"; structure "0,1^2-"; splice_chain ",102962413^102960047-";
chr11	juncbase	jcn_only_AA	102960038	102962413	.	-	.	gene_id "jcn_only_AA.179"; transcript_id "jcn_only_AA.179"; gene_name "CUFF.1406"; flanks "102960038-,102962413^"; structure "1-,2-"; splice_chain "102960047-,102960038-";
chr11	juncbase	intron_retention	10829096	10828928	.	-	.	gene_id "intron_retention.220"; transcript_id "intron_retention.220"; gene_name "CUFF.1349"; flanks "10829096-,10828928^"; structure "0,1^2-"; splice_chain ",10829096^10828928-";
chr11	juncbase	jcn_only_AD	119252183	119230944	.	-	.	gene_id "jcn_only_AD.167"; transcript_id "jcn_only_AD.167"; gene_name "CUFF.1424"; flanks "119252183-,119230944^"; structure "1^,2^"; splice_chain "119252183^,119243417^";
chr11	juncbase	jcn_only_AD	119234559	119230944	.	-	.	gene_id "jcn_only_AD.168"; transcript_id "jcn_only_AD.168"; gene_name "CUFF.1424"; flanks "119234559-,119230944^"; structure "1^,2^"; splice_chain "119243417^,119234559^";
chr11	juncbase	intron_retention	2189096	2188746	.	-	.	gene_id "intron_retention.221"; transcript_id "intron_retention.221"; gene_name ""; flanks "2189096-,2188746^"; structure "0,1^2-"; splice_chain ",2189096^2188746-";
chr11	juncbase	jcn_only_AA	119291088	119291579	.	-	.	gene_id "jcn_only_AA.180"; transcript_id "jcn_only_AA.180"; gene_name "CUFF.1424"; flanks "119291088-,119291579^"; structure "1-,2-"; splice_chain "119291088-,119291045-";
chr11	juncbase	jcn_only_AA	119291096	119291579	.	-	.	gene_id "jcn_only_AA.181"; transcript_id "jcn_only_AA.181"; gene_name "CUFF.1424"; flanks "119291096-,119291579^"; structure "1-,2-"; splice_chain "119291096-,119291045-";
chr11	juncbase	jcn_only_AA	119291158	119291579	.	-	.	gene_id "jcn_only_AA.182"; transcript_id "jcn_only_AA.182"; gene_name "CUFF.1424"; flanks "119291158-,119291579^"; structure "1-,2-"; splice_chain "119291158-,119291045-";
chr11	juncbase	alternative_acceptor	8496363	8502081	.	-	.	gene_id "alternative_acceptor.130"; transcript_id "alternative_acceptor.130"; gene_name ""; flanks "8496363-,8502081^"; structure "1-,2-"; splice_chain "8498830-,8496363-";
chr11	juncbase	alternative_acceptor	8496613	8502081	.	-	.	gene_id "alternative_acceptor.131"; transcript_id "alternative_acceptor.131"; gene_name ""; flanks "8496613-,8502081^"; structure "1-,2-"; splice_chain "8498830-,8496613-";
chr11	juncbase	intron_retention	57310653	57310732	.	+	.	gene_id "intron_retention.222"; transcript_id "intron_retention.222"; gene_name ""; flanks "57310653-,57310732^"; structure "0,1^2-"; splice_chain ",57310653^57310732-";
chr11	juncbase	jcn_only_AA	124766951	124768294	.	-	.	gene_id "jcn_only_AA.183"; transcript_id "jcn_only_AA.183"; gene_name ""; flanks "124766951-,124768294^"; structure "1-,2-"; splice_chain "124767157-,124766951-";
chr11	juncbase	alternative_acceptor	2188715	2189096	.	-	.	gene_id "alternative_acceptor.132"; transcript_id "alternative_acceptor.132"; gene_name "CUFF.1325"; flanks "2188715-,2189096^"; structure "1-,2-"; splice_chain "2188746-,2188715-";
chr11	juncbase	alternative_donor	10829721	10828928	.	-	.	gene_id "alternative_donor.129"; transcript_id "alternative_donor.129"; gene_name "CUFF.1349,CUFF.1406"; flanks "10829721-,10828928^"; structure "1^,2^"; splice_chain "10829721^,10829081^";
chr11	juncbase	alternative_donor	10829292	10828928	.	-	.	gene_id "alternative_donor.130"; transcript_id "alternative_donor.130"; gene_name "CUFF.1349,CUFF.1406"; flanks "10829292-,10828928^"; structure "1^,2^"; splice_chain "10829292^,10829081^";
chr11	juncbase	alternative_donor	10829096	10828928	.	-	.	gene_id "alternative_donor.131"; transcript_id "alternative_donor.131"; gene_name "CUFF.1349,CUFF.1406"; flanks "10829096-,10828928^"; structure "1^,2^"; splice_chain "10829096^,10829081^";
chr11	juncbase	alternative_donor	102962413	102960047	.	-	.	gene_id "alternative_donor.132"; transcript_id "alternative_donor.132"; gene_name "CUFF.1323,CUFF.1406"; flanks "102962413-,102960047^"; structure "1^,2^"; splice_chain "102962413^,102962245^";
chr11	juncbase	alternative_donor	102962516	102960047	.	-	.	gene_id "alternative_donor.133"; transcript_id "alternative_donor.133"; gene_name "CUFF.1323,CUFF.1406"; flanks "102962516-,102960047^"; structure "1^,2^"; splice_chain "102962516^,102962245^";
chr11	juncbase	alternative_acceptor	63669802	63670076	.	+	.	gene_id "alternative_acceptor.133"; transcript_id "alternative_acceptor.133"; gene_name "CUFF.1318,CUFF.1374"; flanks "63669802-,63670076^"; structure "1-,2-"; splice_chain "63670073-,63670076-";
chr11	juncbase	cassette	118532599	118532218	.	-	.	gene_id "cassette.131"; transcript_id "cassette.131"; gene_name "CUFF.1418"; flanks "118532599-,118532218^"; structure "0,1-2^"; splice_chain ",118532438-118532346^";
chr11	juncbase	cassette	6640427	6639007	.	-	.	gene_id "cassette.132"; transcript_id "cassette.132"; gene_name "CUFF.1339"; flanks "6640427-,6639007^"; structure "0,1-2^"; splice_chain ",6640146-6640007^";
chr11	juncbase	jcn_only_AA	118401949	118402493	.	+	.	gene_id "jcn_only_AA.184"; transcript_id "jcn_only_AA.184"; gene_name "CUFF.1318,CUFF.1417"; flanks "118401949-,118402493^"; structure "1-,2-"; splice_chain "118402490-,118402493-";
chr11	juncbase	intron_retention	3427840	3428852	.	+	.	gene_id "intron_retention.223"; transcript_id "intron_retention.223"; gene_name "CUFF.1331"; flanks "3427840-,3428852^"; structure "0,1^2-"; splice_chain ",3427840^3428852-";
chr11	juncbase	alternative_donor	65479916	65480237	.	+	.	gene_id "alternative_donor.134"; transcript_id "alternative_donor.134"; gene_name "CUFF.1381"; flanks "65479916-,65480237^"; structure "1^,2^"; splice_chain "65479916^,65480068^";
chr11	juncbase	cassette	2188665	2187998	.	-	.	gene_id "cassette.133"; transcript_id "cassette.133"; gene_name "CUFF.1325"; flanks "2188665-,2187998^"; structure "0,1-2^"; splice_chain ",2188262-2188117^";
chr11	juncbase	jcn_only_AA	61615756	61624483	.	+	.	gene_id "jcn_only_AA.185"; transcript_id "jcn_only_AA.185"; gene_name "CUFF.1367"; flanks "61615756-,61624483^"; structure "1-,2-"; splice_chain "61616153-,61624483-";
chr11	juncbase	intron_retention	8502081	8496613	.	-	.	gene_id "intron_retention.224"; transcript_id "intron_retention.224"; gene_name ""; flanks "8502081-,8496613^"; structure "0,1^2-"; splice_chain ",8502081^8496613-";
chr11	juncbase	intron_retention	119056661	119056801	.	+	.	gene_id "intron_retention.225"; transcript_id "intron_retention.225"; gene_name ""; flanks "119056661-,119056801^"; structure "0,1^2-"; splice_chain ",119056661^119056801-";
chr11	juncbase	intron_retention	1775224	1775131	.	-	.	gene_id "intron_retention.226"; transcript_id "intron_retention.226"; gene_name "CUFF.1323"; flanks "1775224-,1775131^"; structure "0,1^2-"; splice_chain ",1775224^1775131-";
chr11	juncbase	intron_retention	10828367	10827594	.	-	.	gene_id "intron_retention.227"; transcript_id "intron_retention.227"; gene_name "CUFF.1349"; flanks "10828367-,10827594^"; structure "0,1^2-"; splice_chain ",10828367^10827594-";
chr11	juncbase	intron_retention	119056950	119057188	.	+	.	gene_id "intron_retention.228"; transcript_id "intron_retention.228"; gene_name ""; flanks "119056950-,119057188^"; structure "0,1^2-"; splice_chain ",119056950^119057188-";
chr11	juncbase	jcn_only_AA	119056219	119056558	.	+	.	gene_id "jcn_only_AA.186"; transcript_id "jcn_only_AA.186"; gene_name "CUFF.1426"; flanks "119056219-,119056558^"; structure "1-,2-"; splice_chain "119056558-,119056634-";
chr11	juncbase	jcn_only_AA	119056219	119056631	.	+	.	gene_id "jcn_only_AA.187"; transcript_id "jcn_only_AA.187"; gene_name "CUFF.1426"; flanks "119056219-,119056631^"; structure "1-,2-"; splice_chain "119056631-,119056634-";
chr11	juncbase	alternative_donor	36397708	36440805	.	+	.	gene_id "alternative_donor.135"; transcript_id "alternative_donor.135"; gene_name "CUFF.1357"; flanks "36397708-,36440805^"; structure "1^,2^"; splice_chain "36397708^,36424928^";
chr11	juncbase	intron_retention	117073909	117074023	.	+	.	gene_id "intron_retention.229"; transcript_id "intron_retention.229"; gene_name "CUFF.1412"; flanks "117073909-,117074023^"; structure "0,1^2-"; splice_chain ",117073909^117074023-";
chr11	juncbase	jcn_only_AD	57310814	57311097	.	+	.	gene_id "jcn_only_AD.169"; transcript_id "jcn_only_AD.169"; gene_name "CUFF.1365"; flanks "57310814-,57311097^"; structure "1^,2^"; splice_chain "57310814^,57310847^";
chr11	juncbase	alternative_acceptor	118405070	118416834	.	+	.	gene_id "alternative_acceptor.134"; transcript_id "alternative_acceptor.134"; gene_name "CUFF.1417"; flanks "118405070-,118416834^"; structure "1-,2-"; splice_chain "118405222-,118416834-";
chr11	juncbase	alternative_acceptor	118405070	118406223	.	+	.	gene_id "alternative_acceptor.135"; transcript_id "alternative_acceptor.135"; gene_name "CUFF.1417"; flanks "118405070-,118406223^"; structure "1-,2-"; splice_chain "118405222-,118406223-";
chr11	juncbase	jcn_only_AA	36415561	36415946	.	+	.	gene_id "jcn_only_AA.188"; transcript_id "jcn_only_AA.188"; gene_name ""; flanks "36415561-,36415946^"; structure "1-,2-"; splice_chain "36415946-,36422547-";
chr11	juncbase	jcn_only_AA	36415561	36417664	.	+	.	gene_id "jcn_only_AA.189"; transcript_id "jcn_only_AA.189"; gene_name ""; flanks "36415561-,36417664^"; structure "1-,2-"; splice_chain "36417664-,36422547-";
chr11	juncbase	intron_retention	118402241	118402490	.	+	.	gene_id "intron_retention.230"; transcript_id "intron_retention.230"; gene_name ""; flanks "118402241-,118402490^"; structure "0,1^2-"; splice_chain ",118402241^118402490-";
chr11	juncbase	intron_retention	829183	829360	.	+	.	gene_id "intron_retention.231"; transcript_id "intron_retention.231"; gene_name "CUFF.1318"; flanks "829183-,829360^"; structure "0,1^2-"; splice_chain ",829183^829360-";
chr11	juncbase	jcn_only_AA	115267609	115267987	.	+	.	gene_id "jcn_only_AA.190"; transcript_id "jcn_only_AA.190"; gene_name "CUFF.1391,CUFF.1411"; flanks "115267609-,115267987^"; structure "1-,2-"; splice_chain "115267984-,115267987-";
chr11	juncbase	jcn_only_AA	75520419	75522469	.	-	.	gene_id "jcn_only_AA.191"; transcript_id "jcn_only_AA.191"; gene_name "CUFF.1395"; flanks "75520419-,75522469^"; structure "1-,2-"; splice_chain "75520419-,75514562-";
chr11	juncbase	jcn_only_AA	75514770	75522469	.	-	.	gene_id "jcn_only_AA.192"; transcript_id "jcn_only_AA.192"; gene_name "CUFF.1395"; flanks "75514770-,75522469^"; structure "1-,2-"; splice_chain "75514770-,75514562-";
chr11	juncbase	alternative_acceptor	63656436	63662631	.	+	.	gene_id "alternative_acceptor.136"; transcript_id "alternative_acceptor.136"; gene_name ""; flanks "63656436-,63662631^"; structure "1-,2-"; splice_chain "63657694-,63662631-";
chr11	juncbase	intron_retention	10828802	10827594	.	-	.	gene_id "intron_retention.232"; transcript_id "intron_retention.232"; gene_name "CUFF.1349"; flanks "10828802-,10827594^"; structure "0,1^2-"; splice_chain ",10828802^10827594-";
chr11	juncbase	intron_retention	10828802	10827557	.	-	.	gene_id "intron_retention.233"; transcript_id "intron_retention.233"; gene_name ""; flanks "10828802-,10827557^"; structure "0,1^2-"; splice_chain ",10828802^10827557-";
chr11	juncbase	alternative_donor	8502081	8496363	.	-	.	gene_id "alternative_donor.136"; transcript_id "alternative_donor.136"; gene_name ""; flanks "8502081-,8496363^"; structure "1^,2^"; splice_chain "8588798^,8502081^";
chr11	juncbase	alternative_donor	8615291	8496363	.	-	.	gene_id "alternative_donor.137"; transcript_id "alternative_donor.137"; gene_name ""; flanks "8615291-,8496363^"; structure "1^,2^"; splice_chain "8615291^,8588798^";
chr11	juncbase	jcn_only_AA	65481319	65482131	.	+	.	gene_id "jcn_only_AA.193"; transcript_id "jcn_only_AA.193"; gene_name ""; flanks "65481319-,65482131^"; structure "1-,2-"; splice_chain "65481966-,65482131-";
chr11	juncbase	jcn_only_AD	94706453	94705357	.	-	.	gene_id "jcn_only_AD.170"; transcript_id "jcn_only_AD.170"; gene_name "CUFF.1402"; flanks "94706453-,94705357^"; structure "1^,2^"; splice_chain "94706662^,94706453^";
chr11	juncbase	jcn_only_AD	94706437	94705357	.	-	.	gene_id "jcn_only_AD.171"; transcript_id "jcn_only_AD.171"; gene_name "CUFF.1402"; flanks "94706437-,94705357^"; structure "1^,2^"; splice_chain "94706662^,94706437^";
chr11	juncbase	intron_retention	10826460	10825965	.	-	.	gene_id "intron_retention.234"; transcript_id "intron_retention.234"; gene_name ""; flanks "10826460-,10825965^"; structure "0,1^2-"; splice_chain ",10826460^10825965-";
chr11	juncbase	jcn_only_AA	65479750	65479850	.	+	.	gene_id "jcn_only_AA.194"; transcript_id "jcn_only_AA.194"; gene_name "CUFF.1381,CUFF.1388"; flanks "65479750-,65479850^"; structure "1-,2-"; splice_chain "65479821-,65479850-";
chr11	juncbase	jcn_only_AD	409860	408893	.	-	.	gene_id "jcn_only_AD.172"; transcript_id "jcn_only_AD.172"; gene_name "CUFF.1327"; flanks "409860-,408893^"; structure "1^,2^"; splice_chain "409860^,409217^";
chr11	juncbase	intron_retention	6638532	6638384	.	-	.	gene_id "intron_retention.235"; transcript_id "intron_retention.235"; gene_name "CUFF.1339"; flanks "6638532-,6638384^"; structure "0,1^2-"; splice_chain ",6638532^6638384-";
chr11	juncbase	jcn_only_AA	133710704	133711925	.	-	.	gene_id "jcn_only_AA.195"; transcript_id "jcn_only_AA.195"; gene_name "CUFF.1434"; flanks "133710704-,133711925^"; structure "1-,2-"; splice_chain "133710818-,133710704-";
chr11	juncbase	jcn_only_AA	118402586	118402961	.	+	.	gene_id "jcn_only_AA.196"; transcript_id "jcn_only_AA.196"; gene_name "CUFF.1392"; flanks "118402586-,118402961^"; structure "1-,2-"; splice_chain "118402812-,118402961-";
chr11	juncbase	jcn_only_AA	118402586	118403125	.	+	.	gene_id "jcn_only_AA.197"; transcript_id "jcn_only_AA.197"; gene_name "CUFF.1392"; flanks "118402586-,118403125^"; structure "1-,2-"; splice_chain "118402812-,118403125-";
chr11	juncbase	jcn_only_AA	118402586	118403005	.	+	.	gene_id "jcn_only_AA.198"; transcript_id "jcn_only_AA.198"; gene_name "CUFF.1392"; flanks "118402586-,118403005^"; structure "1-,2-"; splice_chain "118402812-,118403005-";
chr11	juncbase	jcn_only_AA	407534	407817	.	-	.	gene_id "jcn_only_AA.199"; transcript_id "jcn_only_AA.199"; gene_name "CUFF.1316"; flanks "407534-,407817^"; structure "1-,2-"; splice_chain "407568-,407534-";
chr11	juncbase	jcn_only_AA	118404844	118404984	.	+	.	gene_id "jcn_only_AA.200"; transcript_id "jcn_only_AA.200"; gene_name "CUFF.1417"; flanks "118404844-,118404984^"; structure "1-,2-"; splice_chain "118404981-,118404984-";
chr11	juncbase	cassette	118927731	118926879	.	-	.	gene_id "cassette.134"; transcript_id "cassette.134"; gene_name "CUFF.1422"; flanks "118927731-,118926879^"; structure "0,1-2^"; splice_chain ",118927116-118926991^";
chr11	juncbase	intron_retention	119291579	119291088	.	-	.	gene_id "intron_retention.236"; transcript_id "intron_retention.236"; gene_name ""; flanks "119291579-,119291088^"; structure "0,1^2-"; splice_chain ",119291579^119291088-";
chr11	juncbase	intron_retention	406349	406059	.	-	.	gene_id "intron_retention.237"; transcript_id "intron_retention.237"; gene_name "CUFF.1316"; flanks "406349-,406059^"; structure "0,1^2-"; splice_chain ",406349^406059-";
chr11	juncbase	alternative_donor	2192927	2190925	.	-	.	gene_id "alternative_donor.138"; transcript_id "alternative_donor.138"; gene_name ""; flanks "2192927-,2190925^"; structure "1^,2^"; splice_chain "2192927^,2192915^";
chr11	juncbase	jcn_only_AD	36475656	36483892	.	+	.	gene_id "jcn_only_AD.173"; transcript_id "jcn_only_AD.173"; gene_name ""; flanks "36475656-,36483892^"; structure "1^,2^"; splice_chain "36475656^,36476368^";
chr11	juncbase	jcn_only_AD	36476996	36483892	.	+	.	gene_id "jcn_only_AD.174"; transcript_id "jcn_only_AD.174"; gene_name ""; flanks "36476996-,36483892^"; structure "1^,2^"; splice_chain "36476368^,36476996^";
chr11	juncbase	jcn_only_AD	124768294	124766951	.	-	.	gene_id "jcn_only_AD.175"; transcript_id "jcn_only_AD.175"; gene_name ""; flanks "124768294-,124766951^"; structure "1^,2^"; splice_chain "124768294^,124767622^";
chr11	juncbase	jcn_only_AD	67772277	67771268	.	-	.	gene_id "jcn_only_AD.176"; transcript_id "jcn_only_AD.176"; gene_name "CUFF.1340,CUFF.1386"; flanks "67772277-,67771268^"; structure "1^,2^"; splice_chain "67772277^,67771418^";
chr11	juncbase	jcn_only_AD	3427840	3428852	.	+	.	gene_id "jcn_only_AD.177"; transcript_id "jcn_only_AD.177"; gene_name "CUFF.1331"; flanks "3427840-,3428852^"; structure "1^,2^"; splice_chain "3427840^,3427945^";
chr11	juncbase	alternative_donor	119056219	119056631	.	+	.	gene_id "alternative_donor.139"; transcript_id "alternative_donor.139"; gene_name "CUFF.1426"; flanks "119056219-,119056631^"; structure "1^,2^"; splice_chain "119056219^,119056337^";
chr11	juncbase	jcn_only_AD	124767484	124767157	.	-	.	gene_id "jcn_only_AD.178"; transcript_id "jcn_only_AD.178"; gene_name ""; flanks "124767484-,124767157^"; structure "1^,2^"; splice_chain "124767622^,124767484^";
chr11	juncbase	jcn_only_AD	124768294	124767157	.	-	.	gene_id "jcn_only_AD.179"; transcript_id "jcn_only_AD.179"; gene_name ""; flanks "124768294-,124767157^"; structure "1^,2^"; splice_chain "124768294^,124767622^";
chr11	juncbase	jcn_only_AA	119230944	119252183	.	-	.	gene_id "jcn_only_AA.201"; transcript_id "jcn_only_AA.201"; gene_name "CUFF.1424"; flanks "119230944-,119252183^"; structure "1-,2-"; splice_chain "119244231-,119230944-";
chr11	juncbase	cassette	10828802	10827594	.	-	.	gene_id "cassette.135"; transcript_id "cassette.135"; gene_name "CUFF.1349"; flanks "10828802-,10827594^"; structure "0,1-2^"; splice_chain ",10828432-10828367^";
chr11	juncbase	jcn_only_AD	10829721	10828928	.	-	.	gene_id "jcn_only_AD.180"; transcript_id "jcn_only_AD.180"; gene_name "CUFF.1349,CUFF.1406"; flanks "10829721-,10828928^"; structure "1^,2^"; splice_chain "10829721^,10829081^";
chr11	juncbase	jcn_only_AD	10829292	10828928	.	-	.	gene_id "jcn_only_AD.181"; transcript_id "jcn_only_AD.181"; gene_name "CUFF.1349,CUFF.1406"; flanks "10829292-,10828928^"; structure "1^,2^"; splice_chain "10829292^,10829081^";
chr11	juncbase	jcn_only_AD	10829096	10828928	.	-	.	gene_id "jcn_only_AD.182"; transcript_id "jcn_only_AD.182"; gene_name "CUFF.1349,CUFF.1406"; flanks "10829096-,10828928^"; structure "1^,2^"; splice_chain "10829096^,10829081^";
chr11	juncbase	alternative_acceptor	10821303	10821791	.	-	.	gene_id "alternative_acceptor.137"; transcript_id "alternative_acceptor.137"; gene_name "CUFF.1349"; flanks "10821303-,10821791^"; structure "1-,2-"; splice_chain "10821715-,10821303-";
chr11	juncbase	alternative_donor	119056874	119057188	.	+	.	gene_id "alternative_donor.140"; transcript_id "alternative_donor.140"; gene_name "CUFF.1426"; flanks "119056874-,119057188^"; structure "1^,2^"; splice_chain "119056874^,119056950^";
chr11	juncbase	alternative_acceptor	133710704	133711925	.	-	.	gene_id "alternative_acceptor.138"; transcript_id "alternative_acceptor.138"; gene_name "CUFF.1434"; flanks "133710704-,133711925^"; structure "1-,2-"; splice_chain "133710818-,133710704-";
chr11	juncbase	intron_retention	828259	828575	.	+	.	gene_id "intron_retention.238"; transcript_id "intron_retention.238"; gene_name ""; flanks "828259-,828575^"; structure "0,1^2-"; splice_chain ",828259^828575-";
chr11	juncbase	intron_retention	36397708	36398179	.	+	.	gene_id "intron_retention.239"; transcript_id "intron_retention.239"; gene_name ""; flanks "36397708-,36398179^"; structure "0,1^2-"; splice_chain ",36397708^36398179-";
chr11	juncbase	jcn_only_AA	75522581	75524648	.	-	.	gene_id "jcn_only_AA.202"; transcript_id "jcn_only_AA.202"; gene_name "CUFF.1395"; flanks "75522581-,75524648^"; structure "1-,2-"; splice_chain "75522614-,75522581-";
chr11	juncbase	jcn_only_AD	10829081	10828928	.	-	.	gene_id "jcn_only_AD.183"; transcript_id "jcn_only_AD.183"; gene_name "CUFF.1349"; flanks "10829081-,10828928^"; structure "1^,2^"; splice_chain "10829721^,10829081^";
chr11	juncbase	jcn_only_AD	10829292	10828928	.	-	.	gene_id "jcn_only_AD.184"; transcript_id "jcn_only_AD.184"; gene_name "CUFF.1349"; flanks "10829292-,10828928^"; structure "1^,2^"; splice_chain "10829721^,10829292^";
chr11	juncbase	jcn_only_AD	10829096	10828928	.	-	.	gene_id "jcn_only_AD.185"; transcript_id "jcn_only_AD.185"; gene_name "CUFF.1349"; flanks "10829096-,10828928^"; structure "1^,2^"; splice_chain "10829721^,10829096^";
chr11	juncbase	intron_retention	119058367	119058649	.	+	.	gene_id "intron_retention.240"; transcript_id "intron_retention.240"; gene_name ""; flanks "119058367-,119058649^"; structure "0,1^2-"; splice_chain ",119058367^119058649-";
chr11	juncbase	jcn_only_AD	8615291	8496363	.	-	.	gene_id "jcn_only_AD.186"; transcript_id "jcn_only_AD.186"; gene_name ""; flanks "8615291-,8496363^"; structure "1^,2^"; splice_chain "8615291^,8502081^";
chr11	juncbase	jcn_only_AD	8588798	8496363	.	-	.	gene_id "jcn_only_AD.187"; transcript_id "jcn_only_AD.187"; gene_name ""; flanks "8588798-,8496363^"; structure "1^,2^"; splice_chain "8588798^,8502081^";
chr11	juncbase	alternative_donor	124768294	124766951	.	-	.	gene_id "alternative_donor.141"; transcript_id "alternative_donor.141"; gene_name ""; flanks "124768294-,124766951^"; structure "1^,2^"; splice_chain "124768294^,124767622^";
chr11	juncbase	alternative_donor	104916018	104915385	.	-	.	gene_id "alternative_donor.142"; transcript_id "alternative_donor.142"; gene_name "CUFF.1409"; flanks "104916018-,104915385^"; structure "1^,2^"; splice_chain "104916018^,104915918^";
chr11	juncbase	alternative_donor	104972135	104915385	.	-	.	gene_id "alternative_donor.143"; transcript_id "alternative_donor.143"; gene_name "CUFF.1409"; flanks "104972135-,104915385^"; structure "1^,2^"; splice_chain "104972135^,104915918^";
chr11	juncbase	alternative_acceptor	830713	831224	.	+	.	gene_id "alternative_acceptor.139"; transcript_id "alternative_acceptor.139"; gene_name "CUFF.1318"; flanks "830713-,831224^"; structure "1-,2-"; splice_chain "830866-,831224-";
chr11	juncbase	jcn_only_AD	104916018	104915385	.	-	.	gene_id "jcn_only_AD.188"; transcript_id "jcn_only_AD.188"; gene_name "CUFF.1409"; flanks "104916018-,104915385^"; structure "1^,2^"; splice_chain "104972135^,104916018^";
chr11	juncbase	jcn_only_AD	104915918	104915385	.	-	.	gene_id "jcn_only_AD.189"; transcript_id "jcn_only_AD.189"; gene_name "CUFF.1409"; flanks "104915918-,104915385^"; structure "1^,2^"; splice_chain "104972135^,104915918^";
chr11	juncbase	jcn_only_AA	6622005	6624634	.	-	.	gene_id "jcn_only_AA.203"; transcript_id "jcn_only_AA.203"; gene_name "CUFF.1340"; flanks "6622005-,6624634^"; structure "1-,2-"; splice_chain "6623445-,6622005-";
chr11	juncbase	jcn_only_AA	6623494	6624634	.	-	.	gene_id "jcn_only_AA.204"; transcript_id "jcn_only_AA.204"; gene_name "CUFF.1340"; flanks "6623494-,6624634^"; structure "1-,2-"; splice_chain "6623494-,6623445-";
chr11	juncbase	intron_retention	118927743	118927716	.	-	.	gene_id "intron_retention.241"; transcript_id "intron_retention.241"; gene_name ""; flanks "118927743-,118927716^"; structure "0,1^2-"; splice_chain ",118927743^118927716-";
chr11	juncbase	alternative_donor	119249717	119244231	.	-	.	gene_id "alternative_donor.144"; transcript_id "alternative_donor.144"; gene_name ""; flanks "119249717-,119244231^"; structure "1^,2^"; splice_chain "119252183^,119249717^";
chr11	juncbase	alternative_donor	119246934	119244231	.	-	.	gene_id "alternative_donor.145"; transcript_id "alternative_donor.145"; gene_name ""; flanks "119246934-,119244231^"; structure "1^,2^"; splice_chain "119252183^,119246934^";
chr11	juncbase	intron_retention	117072657	117073718	.	+	.	gene_id "intron_retention.242"; transcript_id "intron_retention.242"; gene_name ""; flanks "117072657-,117073718^"; structure "0,1^2-"; splice_chain ",117072657^117073718-";
chr11	juncbase	intron_retention	119059576	119059714	.	+	.	gene_id "intron_retention.243"; transcript_id "intron_retention.243"; gene_name "CUFF.1426"; flanks "119059576-,119059714^"; structure "0,1^2-"; splice_chain ",119059576^119059714-";
chr11	juncbase	intron_retention	119290761	119290141	.	-	.	gene_id "intron_retention.244"; transcript_id "intron_retention.244"; gene_name "CUFF.1424"; flanks "119290761-,119290141^"; structure "0,1^2-"; splice_chain ",119290761^119290141-";
chr11	juncbase	intron_retention	10829081	10828928	.	-	.	gene_id "intron_retention.245"; transcript_id "intron_retention.245"; gene_name "CUFF.1349"; flanks "10829081-,10828928^"; structure "0,1^2-"; splice_chain ",10829081^10828928-";
chr11	juncbase	alternative_acceptor	119291088	119291579	.	-	.	gene_id "alternative_acceptor.140"; transcript_id "alternative_acceptor.140"; gene_name "CUFF.1424"; flanks "119291088-,119291579^"; structure "1-,2-"; splice_chain "119291088-,119291045-";
chr11	juncbase	alternative_acceptor	119291096	119291579	.	-	.	gene_id "alternative_acceptor.141"; transcript_id "alternative_acceptor.141"; gene_name "CUFF.1424"; flanks "119291096-,119291579^"; structure "1-,2-"; splice_chain "119291096-,119291045-";
chr11	juncbase	alternative_acceptor	119291158	119291579	.	-	.	gene_id "alternative_acceptor.142"; transcript_id "alternative_acceptor.142"; gene_name "CUFF.1424"; flanks "119291158-,119291579^"; structure "1-,2-"; splice_chain "119291158-,119291045-";
chr11	juncbase	intron_retention	830337	830621	.	+	.	gene_id "intron_retention.246"; transcript_id "intron_retention.246"; gene_name "CUFF.1318"; flanks "830337-,830621^"; structure "0,1^2-"; splice_chain ",830337^830621-";
chr11	juncbase	alternative_donor	10829081	10828928	.	-	.	gene_id "alternative_donor.146"; transcript_id "alternative_donor.146"; gene_name "CUFF.1349"; flanks "10829081-,10828928^"; structure "1^,2^"; splice_chain "10829292^,10829081^";
chr11	juncbase	alternative_donor	10829721	10828928	.	-	.	gene_id "alternative_donor.147"; transcript_id "alternative_donor.147"; gene_name "CUFF.1349"; flanks "10829721-,10828928^"; structure "1^,2^"; splice_chain "10829721^,10829292^";
chr11	juncbase	alternative_donor	10829096	10828928	.	-	.	gene_id "alternative_donor.148"; transcript_id "alternative_donor.148"; gene_name "CUFF.1349"; flanks "10829096-,10828928^"; structure "1^,2^"; splice_chain "10829292^,10829096^";
chr11	juncbase	alternative_acceptor	2905140	2905229	.	-	.	gene_id "alternative_acceptor.143"; transcript_id "alternative_acceptor.143"; gene_name "CUFF.1327"; flanks "2905140-,2905229^"; structure "1-,2-"; splice_chain "2905145-,2905140-";
chr11	juncbase	jcn_only_AD	36476996	36483892	.	+	.	gene_id "jcn_only_AD.190"; transcript_id "jcn_only_AD.190"; gene_name ""; flanks "36476996-,36483892^"; structure "1^,2^"; splice_chain "36475656^,36476996^";
chr11	juncbase	jcn_only_AD	36476368	36483892	.	+	.	gene_id "jcn_only_AD.191"; transcript_id "jcn_only_AD.191"; gene_name ""; flanks "36476368-,36483892^"; structure "1^,2^"; splice_chain "36475656^,36476368^";
chr11	juncbase	cassette	408695	407957	.	-	.	gene_id "cassette.136"; transcript_id "cassette.136"; gene_name "CUFF.1316"; flanks "408695-,407957^"; structure "0,1-2^"; splice_chain ",408206-408073^";
chr11	juncbase	jcn_only_AA	5687503	5699434	.	-	.	gene_id "jcn_only_AA.205"; transcript_id "jcn_only_AA.205"; gene_name ""; flanks "5687503-,5699434^"; structure "1-,2-"; splice_chain "5691177-,5687503-";
chr11	juncbase	jcn_only_AA	36415561	36422547	.	+	.	gene_id "jcn_only_AA.206"; transcript_id "jcn_only_AA.206"; gene_name "CUFF.1357"; flanks "36415561-,36422547^"; structure "1-,2-"; splice_chain "36415946-,36422547-";
chr11	juncbase	jcn_only_AA	36415561	36417664	.	+	.	gene_id "jcn_only_AA.207"; transcript_id "jcn_only_AA.207"; gene_name "CUFF.1357"; flanks "36415561-,36417664^"; structure "1-,2-"; splice_chain "36415946-,36417664-";
chr11	juncbase	intron_retention	118927731	118927116	.	-	.	gene_id "intron_retention.247"; transcript_id "intron_retention.247"; gene_name "CUFF.1422"; flanks "118927731-,118927116^"; structure "0,1^2-"; splice_chain ",118927731^118927116-";
chr11	juncbase	jcn_only_AA	63999436	63999866	.	+	.	gene_id "jcn_only_AA.208"; transcript_id "jcn_only_AA.208"; gene_name "CUFF.1376"; flanks "63999436-,63999866^"; structure "1-,2-"; splice_chain "63999866-,64001366-";
chr11	juncbase	jcn_only_AA	63999436	63999902	.	+	.	gene_id "jcn_only_AA.209"; transcript_id "jcn_only_AA.209"; gene_name "CUFF.1376"; flanks "63999436-,63999902^"; structure "1-,2-"; splice_chain "63999902-,64001366-";
chr11	juncbase	jcn_only_AA	63999436	63999982	.	+	.	gene_id "jcn_only_AA.210"; transcript_id "jcn_only_AA.210"; gene_name "CUFF.1376"; flanks "63999436-,63999982^"; structure "1-,2-"; splice_chain "63999982-,64001366-";
chr11	juncbase	alternative_acceptor	558979	559347	.	-	.	gene_id "alternative_acceptor.144"; transcript_id "alternative_acceptor.144"; gene_name "CUFF.1317"; flanks "558979-,559347^"; structure "1-,2-"; splice_chain "559062-,558979-";
chr11	juncbase	jcn_only_AD	8502081	8496363	.	-	.	gene_id "jcn_only_AD.192"; transcript_id "jcn_only_AD.192"; gene_name ""; flanks "8502081-,8496363^"; structure "1^,2^"; splice_chain "8615291^,8502081^";
chr11	juncbase	jcn_only_AD	8588798	8496363	.	-	.	gene_id "jcn_only_AD.193"; transcript_id "jcn_only_AD.193"; gene_name ""; flanks "8588798-,8496363^"; structure "1^,2^"; splice_chain "8615291^,8588798^";
chr11	juncbase	alternative_donor	57310814	57311097	.	+	.	gene_id "alternative_donor.149"; transcript_id "alternative_donor.149"; gene_name "CUFF.1365"; flanks "57310814-,57311097^"; structure "1^,2^"; splice_chain "57310814^,57310847^";
chr11	juncbase	intron_retention	831032	831224	.	+	.	gene_id "intron_retention.248"; transcript_id "intron_retention.248"; gene_name "CUFF.1318"; flanks "831032-,831224^"; structure "0,1^2-"; splice_chain ",831032^831224-";
chr11	juncbase	alternative_donor	104916018	104915385	.	-	.	gene_id "alternative_donor.150"; transcript_id "alternative_donor.150"; gene_name "CUFF.1409"; flanks "104916018-,104915385^"; structure "1^,2^"; splice_chain "104972135^,104916018^";
chr11	juncbase	alternative_donor	104915918	104915385	.	-	.	gene_id "alternative_donor.151"; transcript_id "alternative_donor.151"; gene_name "CUFF.1409"; flanks "104915918-,104915385^"; structure "1^,2^"; splice_chain "104972135^,104915918^";
chr11	juncbase	jcn_only_AA	63999436	63999866	.	+	.	gene_id "jcn_only_AA.211"; transcript_id "jcn_only_AA.211"; gene_name "CUFF.1376"; flanks "63999436-,63999866^"; structure "1-,2-"; splice_chain "63999866-,63999902-";
chr11	juncbase	jcn_only_AA	63999436	64001366	.	+	.	gene_id "jcn_only_AA.212"; transcript_id "jcn_only_AA.212"; gene_name "CUFF.1376"; flanks "63999436-,64001366^"; structure "1-,2-"; splice_chain "63999902-,64001366-";
chr11	juncbase	jcn_only_AA	63999436	63999982	.	+	.	gene_id "jcn_only_AA.213"; transcript_id "jcn_only_AA.213"; gene_name "CUFF.1376"; flanks "63999436-,63999982^"; structure "1-,2-"; splice_chain "63999902-,63999982-";
chr11	juncbase	intron_retention	65479916	65480237	.	+	.	gene_id "intron_retention.249"; transcript_id "intron_retention.249"; gene_name "CUFF.1381"; flanks "65479916-,65480237^"; structure "0,1^2-"; splice_chain ",65479916^65480237-";
chr11	juncbase	jcn_only_AA	558979	560683	.	-	.	gene_id "jcn_only_AA.214"; transcript_id "jcn_only_AA.214"; gene_name ""; flanks "558979-,560683^"; structure "1-,2-"; splice_chain "559498-,558979-";
chr10	juncbase	alternative_acceptor	78771801	78778771	.	-	.	gene_id "alternative_acceptor.145"; transcript_id "alternative_acceptor.145"; gene_name "CUFF.1265"; flanks "78771801-,78778771^"; structure "1-,2-"; splice_chain "78772315-,78771801-";
chr10	juncbase	jcn_only_AA	80825576	80827145	.	-	.	gene_id "jcn_only_AA.215"; transcript_id "jcn_only_AA.215"; gene_name "CUFF.1270"; flanks "80825576-,80827145^"; structure "1-,2-"; splice_chain "80826343-,80825576-";
chr10	juncbase	cassette	70679737	70694555	.	+	.	gene_id "cassette.137"; transcript_id "cassette.137"; gene_name "CUFF.1251"; flanks "70679737-,70694555^"; structure "0,1-2^"; splice_chain ",70693955-70694116^";
chr10	juncbase	alternative_donor	124151888	124152697	.	+	.	gene_id "alternative_donor.152"; transcript_id "alternative_donor.152"; gene_name "CUFF.1309"; flanks "124151888-,124152697^"; structure "1^,2^"; splice_chain "124134322^,124151888^";
chr10	juncbase	alternative_donor	124134363	124152697	.	+	.	gene_id "alternative_donor.153"; transcript_id "alternative_donor.153"; gene_name "CUFF.1309"; flanks "124134363-,124152697^"; structure "1^,2^"; splice_chain "124134322^,124134363^";
chr10	juncbase	jcn_only_AD	78713559	78709124	.	-	.	gene_id "jcn_only_AD.194"; transcript_id "jcn_only_AD.194"; gene_name "CUFF.1265"; flanks "78713559-,78709124^"; structure "1^,2^"; splice_chain "78713559^,78711795^";
chr10	juncbase	alternative_acceptor	78831403	78832855	.	-	.	gene_id "alternative_acceptor.146"; transcript_id "alternative_acceptor.146"; gene_name "CUFF.1265"; flanks "78831403-,78832855^"; structure "1-,2-"; splice_chain "78831403-,78799395-";
chr10	juncbase	alternative_acceptor	78823901	78832855	.	-	.	gene_id "alternative_acceptor.147"; transcript_id "alternative_acceptor.147"; gene_name "CUFF.1265"; flanks "78823901-,78832855^"; structure "1-,2-"; splice_chain "78823901-,78799395-";
chr10	juncbase	alternative_acceptor	78669854	78674694	.	-	.	gene_id "alternative_acceptor.148"; transcript_id "alternative_acceptor.148"; gene_name "CUFF.1265"; flanks "78669854-,78674694^"; structure "1-,2-"; splice_chain "78673895-,78669854-";
chr10	juncbase	alternative_acceptor	80810174	80825504	.	-	.	gene_id "alternative_acceptor.149"; transcript_id "alternative_acceptor.149"; gene_name "CUFF.1270"; flanks "80810174-,80825504^"; structure "1-,2-"; splice_chain "80814485-,80810174-";
chr10	juncbase	intron_retention	78647049	78644775	.	-	.	gene_id "intron_retention.250"; transcript_id "intron_retention.250"; gene_name ""; flanks "78647049-,78644775^"; structure "0,1^2-"; splice_chain ",78647049^78644775-";
chr10	juncbase	jcn_only_AA	96954434	96961742	.	+	.	gene_id "jcn_only_AA.216"; transcript_id "jcn_only_AA.216"; gene_name "CUFF.1280"; flanks "96954434-,96961742^"; structure "1-,2-"; splice_chain "96961198-,96961742-";
chr10	juncbase	alternative_acceptor	79396327	79397023	.	-	.	gene_id "alternative_acceptor.150"; transcript_id "alternative_acceptor.150"; gene_name "CUFF.1265"; flanks "79396327-,79397023^"; structure "1-,2-"; splice_chain "79396327-,79396273-";
chr10	juncbase	alternative_acceptor	79163781	79397023	.	-	.	gene_id "alternative_acceptor.151"; transcript_id "alternative_acceptor.151"; gene_name "CUFF.1265"; flanks "79163781-,79397023^"; structure "1-,2-"; splice_chain "79396273-,79163781-";
chr10	juncbase	alternative_acceptor	60029064	60036877	.	+	.	gene_id "alternative_acceptor.152"; transcript_id "alternative_acceptor.152"; gene_name "CUFF.1246"; flanks "60029064-,60036877^"; structure "1-,2-"; splice_chain "60035878-,60036877-";
chr10	juncbase	alternative_acceptor	73857208	73887840	.	-	.	gene_id "alternative_acceptor.153"; transcript_id "alternative_acceptor.153"; gene_name "CUFF.1257"; flanks "73857208-,73887840^"; structure "1-,2-"; splice_chain "73862170-,73857208-";
chr10	juncbase	alternative_acceptor	73862725	73887840	.	-	.	gene_id "alternative_acceptor.154"; transcript_id "alternative_acceptor.154"; gene_name "CUFF.1257"; flanks "73862725-,73887840^"; structure "1-,2-"; splice_chain "73862725-,73862170-";
chr10	juncbase	jcn_only_AA	80810174	80825504	.	-	.	gene_id "jcn_only_AA.217"; transcript_id "jcn_only_AA.217"; gene_name "CUFF.1270"; flanks "80810174-,80825504^"; structure "1-,2-"; splice_chain "80814485-,80810174-";
chr10	juncbase	cassette	96972697	96979648	.	+	.	gene_id "cassette.138"; transcript_id "cassette.138"; gene_name "CUFF.1280"; flanks "96972697-,96979648^"; structure "0,1-2^"; splice_chain ",96974609-96974732^";
chr10	juncbase	alternative_acceptor	70661227	70666040	.	+	.	gene_id "alternative_acceptor.155"; transcript_id "alternative_acceptor.155"; gene_name "CUFF.1251"; flanks "70661227-,70666040^"; structure "1-,2-"; splice_chain "70665982-,70666040-";
chr10	juncbase	alternative_donor	124151888	124152697	.	+	.	gene_id "alternative_donor.154"; transcript_id "alternative_donor.154"; gene_name "CUFF.1309"; flanks "124151888-,124152697^"; structure "1^,2^"; splice_chain "124134363^,124151888^";
chr10	juncbase	alternative_donor	124134322	124152697	.	+	.	gene_id "alternative_donor.155"; transcript_id "alternative_donor.155"; gene_name "CUFF.1309"; flanks "124134322-,124152697^"; structure "1^,2^"; splice_chain "124134322^,124134363^";
chr10	juncbase	jcn_only_AA	124186547	124189140	.	+	.	gene_id "jcn_only_AA.218"; transcript_id "jcn_only_AA.218"; gene_name ""; flanks "124186547-,124189140^"; structure "1-,2-"; splice_chain "124187792-,124189140-";
chr10	juncbase	jcn_only_AD	27054147	27048167	.	-	.	gene_id "jcn_only_AD.195"; transcript_id "jcn_only_AD.195"; gene_name "CUFF.1256"; flanks "27054147-,27048167^"; structure "1^,2^"; splice_chain "27054147^,27052809^";
chr10	juncbase	jcn_only_AD	73963185	73956747	.	-	.	gene_id "jcn_only_AD.196"; transcript_id "jcn_only_AD.196"; gene_name "CUFF.1257"; flanks "73963185-,73956747^"; structure "1^,2^"; splice_chain "73972945^,73963185^";
chr10	juncbase	jcn_only_AD	73958207	73956747	.	-	.	gene_id "jcn_only_AD.197"; transcript_id "jcn_only_AD.197"; gene_name "CUFF.1257"; flanks "73958207-,73956747^"; structure "1^,2^"; splice_chain "73972945^,73958207^";
chr10	juncbase	alternative_donor	96961942	96966965	.	+	.	gene_id "alternative_donor.156"; transcript_id "alternative_donor.156"; gene_name "CUFF.1280"; flanks "96961942-,96966965^"; structure "1^,2^"; splice_chain "96961942^,96961952^";
chr10	juncbase	alternative_donor	46168127	46159290	.	-	.	gene_id "alternative_donor.157"; transcript_id "alternative_donor.157"; gene_name "CUFF.1242"; flanks "46168127-,46159290^"; structure "1^,2^"; splice_chain "46168127^,46167698^";
chr10	juncbase	alternative_donor	46167720	46159290	.	-	.	gene_id "alternative_donor.158"; transcript_id "alternative_donor.158"; gene_name "CUFF.1242"; flanks "46167720-,46159290^"; structure "1^,2^"; splice_chain "46167720^,46167698^";
chr10	juncbase	cassette	46158990	46148507	.	-	.	gene_id "cassette.139"; transcript_id "cassette.139"; gene_name "CUFF.1242"; flanks "46158990-,46148507^"; structure "0,1-2^"; splice_chain ",46158129-46158028^";
chr10	juncbase	intron_retention	74095538	74094375	.	-	.	gene_id "intron_retention.251"; transcript_id "intron_retention.251"; gene_name "CUFF.1258"; flanks "74095538-,74094375^"; structure "0,1^2-"; splice_chain ",74095538^74094375-";
chr10	juncbase	cassette	27047991	27040712	.	-	.	gene_id "cassette.140"; transcript_id "cassette.140"; gene_name "CUFF.1224"; flanks "27047991-,27040712^"; structure "0,1-2^"; splice_chain ",27044670-27044584^";
chr10	juncbase	cassette	27054147	27040712	.	-	.	gene_id "cassette.141"; transcript_id "cassette.141"; gene_name "CUFF.1224"; flanks "27054147-,27040712^"; structure "0,1-2^"; splice_chain ",27044670-27044584^";
chr10	juncbase	jcn_only_AA	78637648	78647049	.	-	.	gene_id "jcn_only_AA.219"; transcript_id "jcn_only_AA.219"; gene_name "CUFF.1265"; flanks "78637648-,78647049^"; structure "1-,2-"; splice_chain "78644775-,78637648-";
chr10	juncbase	jcn_only_AA	78637651	78647049	.	-	.	gene_id "jcn_only_AA.220"; transcript_id "jcn_only_AA.220"; gene_name "CUFF.1265"; flanks "78637651-,78647049^"; structure "1-,2-"; splice_chain "78644775-,78637651-";
chr10	juncbase	jcn_only_AA	5123093	5138602	.	+	.	gene_id "jcn_only_AA.221"; transcript_id "jcn_only_AA.221"; gene_name "CUFF.1205"; flanks "5123093-,5138602^"; structure "1-,2-"; splice_chain "5123874-,5138602-";
chr10	juncbase	alternative_donor	46143742	46135411	.	-	.	gene_id "alternative_donor.159"; transcript_id "alternative_donor.159"; gene_name "CUFF.1242"; flanks "46143742-,46135411^"; structure "1^,2^"; splice_chain "46143742^,46135689^";
chr10	juncbase	cassette	27054147	27044670	.	-	.	gene_id "cassette.142"; transcript_id "cassette.142"; gene_name "CUFF.1224"; flanks "27054147-,27044670^"; structure "0,1-2^"; splice_chain ",27048164-27047991^";
chr10	juncbase	cassette	27054147	27040712	.	-	.	gene_id "cassette.143"; transcript_id "cassette.143"; gene_name "CUFF.1224"; flanks "27054147-,27040712^"; structure "0,1-2^"; splice_chain ",27048164-27047991^";
chr10	juncbase	alternative_acceptor	78709124	78713559	.	-	.	gene_id "alternative_acceptor.156"; transcript_id "alternative_acceptor.156"; gene_name "CUFF.1265"; flanks "78709124-,78713559^"; structure "1-,2-"; splice_chain "78711917-,78709124-";
chr10	juncbase	intron_retention	119768593	119765349	.	-	.	gene_id "intron_retention.252"; transcript_id "intron_retention.252"; gene_name "CUFF.1306"; flanks "119768593-,119765349^"; structure "0,1^2-"; splice_chain ",119768593^119765349-";
chr10	juncbase	alternative_acceptor	78799395	78832855	.	-	.	gene_id "alternative_acceptor.157"; transcript_id "alternative_acceptor.157"; gene_name "CUFF.1265"; flanks "78799395-,78832855^"; structure "1-,2-"; splice_chain "78823901-,78799395-";
chr10	juncbase	alternative_acceptor	78831403	78832855	.	-	.	gene_id "alternative_acceptor.158"; transcript_id "alternative_acceptor.158"; gene_name "CUFF.1265"; flanks "78831403-,78832855^"; structure "1-,2-"; splice_chain "78831403-,78823901-";
chr10	juncbase	jcn_only_AA	78778857	78787581	.	-	.	gene_id "jcn_only_AA.222"; transcript_id "jcn_only_AA.222"; gene_name "CUFF.1265"; flanks "78778857-,78787581^"; structure "1-,2-"; splice_chain "78782694-,78778857-";
chr10	juncbase	alternative_donor	78713559	78709124	.	-	.	gene_id "alternative_donor.160"; transcript_id "alternative_donor.160"; gene_name "CUFF.1265"; flanks "78713559-,78709124^"; structure "1^,2^"; splice_chain "78713559^,78711795^";
chr10	juncbase	alternative_donor	124134322	124152697	.	+	.	gene_id "alternative_donor.161"; transcript_id "alternative_donor.161"; gene_name "CUFF.1309"; flanks "124134322-,124152697^"; structure "1^,2^"; splice_chain "124134322^,124151888^";
chr10	juncbase	alternative_donor	124134363	124152697	.	+	.	gene_id "alternative_donor.162"; transcript_id "alternative_donor.162"; gene_name "CUFF.1309"; flanks "124134363-,124152697^"; structure "1^,2^"; splice_chain "124134363^,124151888^";
chr10	juncbase	jcn_only_AD	804068	341564	.	-	.	gene_id "jcn_only_AD.198"; transcript_id "jcn_only_AD.198"; gene_name ""; flanks "804068-,341564^"; structure "1^,2^"; splice_chain "804068^,804066^";
chr10	juncbase	jcn_only_AD	46167698	46159290	.	-	.	gene_id "jcn_only_AD.199"; transcript_id "jcn_only_AD.199"; gene_name "CUFF.1242"; flanks "46167698-,46159290^"; structure "1^,2^"; splice_chain "46168127^,46167698^";
chr10	juncbase	jcn_only_AD	46167720	46159290	.	-	.	gene_id "jcn_only_AD.200"; transcript_id "jcn_only_AD.200"; gene_name "CUFF.1242"; flanks "46167720-,46159290^"; structure "1^,2^"; splice_chain "46168127^,46167720^";
chr10	juncbase	cassette	5077808	5138602	.	+	.	gene_id "cassette.144"; transcript_id "cassette.144"; gene_name "CUFF.1205"; flanks "5077808-,5138602^"; structure "0,1-2^"; splice_chain ",5120062-5120169^";
chr10	juncbase	cassette	80721011	80705746	.	-	.	gene_id "cassette.145"; transcript_id "cassette.145"; gene_name "CUFF.1273"; flanks "80721011-,80705746^"; structure "0,1-2^"; splice_chain ",80720473-80720262^";
chr10	juncbase	jcn_only_AD	80827145	80825576	.	-	.	gene_id "jcn_only_AD.201"; transcript_id "jcn_only_AD.201"; gene_name "CUFF.1220,CUFF.1270"; flanks "80827145-,80825576^"; structure "1^,2^"; splice_chain "80827145^,80826205^";
chr10	juncbase	alternative_donor	27054147	27048167	.	-	.	gene_id "alternative_donor.163"; transcript_id "alternative_donor.163"; gene_name "CUFF.1256"; flanks "27054147-,27048167^"; structure "1^,2^"; splice_chain "27054147^,27052809^";
chr10	juncbase	jcn_only_AD	124151888	124152697	.	+	.	gene_id "jcn_only_AD.202"; transcript_id "jcn_only_AD.202"; gene_name "CUFF.1309"; flanks "124151888-,124152697^"; structure "1^,2^"; splice_chain "124134322^,124151888^";
chr10	juncbase	jcn_only_AD	124134363	124152697	.	+	.	gene_id "jcn_only_AD.203"; transcript_id "jcn_only_AD.203"; gene_name "CUFF.1309"; flanks "124134363-,124152697^"; structure "1^,2^"; splice_chain "124134322^,124134363^";
chr10	juncbase	cassette	27112067	27059274	.	-	.	gene_id "cassette.146"; transcript_id "cassette.146"; gene_name "CUFF.1224"; flanks "27112067-,27059274^"; structure "0,1-2^"; splice_chain ",27066170-27065994^";
chr10	juncbase	cassette	6270181	6274858	.	+	.	gene_id "cassette.147"; transcript_id "cassette.147"; gene_name "CUFF.1208"; flanks "6270181-,6274858^"; structure "0,1-2^"; splice_chain ",6273226-6273277^";
chr10	juncbase	jcn_only_AA	73975867	73975965	.	-	.	gene_id "jcn_only_AA.223"; transcript_id "jcn_only_AA.223"; gene_name "CUFF.1257"; flanks "73975867-,73975965^"; structure "1-,2-"; splice_chain "73975867-,73973089-";
chr10	juncbase	jcn_only_AA	73973035	73975965	.	-	.	gene_id "jcn_only_AA.224"; transcript_id "jcn_only_AA.224"; gene_name "CUFF.1257"; flanks "73973035-,73975965^"; structure "1-,2-"; splice_chain "73973089-,73973035-";
chr10	juncbase	jcn_only_AA	73975612	73975965	.	-	.	gene_id "jcn_only_AA.225"; transcript_id "jcn_only_AA.225"; gene_name "CUFF.1257"; flanks "73975612-,73975965^"; structure "1-,2-"; splice_chain "73975612-,73973089-";
chr10	juncbase	jcn_only_AA	73973109	73975965	.	-	.	gene_id "jcn_only_AA.226"; transcript_id "jcn_only_AA.226"; gene_name "CUFF.1257"; flanks "73973109-,73975965^"; structure "1-,2-"; splice_chain "73973109-,73973089-";
chr10	juncbase	intron_retention	124134322	124152697	.	+	.	gene_id "intron_retention.253"; transcript_id "intron_retention.253"; gene_name "CUFF.1309"; flanks "124134322-,124152697^"; structure "0,1^2-"; splice_chain ",124134322^124152697-";
chr10	juncbase	jcn_only_AD	124187832	124189140	.	+	.	gene_id "jcn_only_AD.204"; transcript_id "jcn_only_AD.204"; gene_name ""; flanks "124187832-,124189140^"; structure "1^,2^"; splice_chain "124186547^,124187832^";
chr10	juncbase	jcn_only_AD	124187936	124189140	.	+	.	gene_id "jcn_only_AD.205"; transcript_id "jcn_only_AD.205"; gene_name ""; flanks "124187936-,124189140^"; structure "1^,2^"; splice_chain "124186547^,124187936^";
chr10	juncbase	intron_retention	119798483	119774621	.	-	.	gene_id "intron_retention.254"; transcript_id "intron_retention.254"; gene_name "CUFF.1306"; flanks "119798483-,119774621^"; structure "0,1^2-"; splice_chain ",119798483^119774621-";
chr10	juncbase	intron_retention	80721656	80721164	.	-	.	gene_id "intron_retention.255"; transcript_id "intron_retention.255"; gene_name ""; flanks "80721656-,80721164^"; structure "0,1^2-"; splice_chain ",80721656^80721164-";
chr10	juncbase	alternative_donor	27149676	27112234	.	-	.	gene_id "alternative_donor.164"; transcript_id "alternative_donor.164"; gene_name "CUFF.1224"; flanks "27149676-,27112234^"; structure "1^,2^"; splice_chain "27149676^,27128662^";
chr10	juncbase	jcn_only_AA	27112234	27149676	.	-	.	gene_id "jcn_only_AA.227"; transcript_id "jcn_only_AA.227"; gene_name "CUFF.1224"; flanks "27112234-,27149676^"; structure "1-,2-"; splice_chain "27128712-,27112234-";
chr10	juncbase	alternative_donor	73972945	73970589	.	-	.	gene_id "alternative_donor.165"; transcript_id "alternative_donor.165"; gene_name "CUFF.1257"; flanks "73972945-,73970589^"; structure "1^,2^"; splice_chain "73972945^,73971946^";
chr10	juncbase	alternative_donor	78647049	78637648	.	-	.	gene_id "alternative_donor.166"; transcript_id "alternative_donor.166"; gene_name "CUFF.1265"; flanks "78647049-,78637648^"; structure "1^,2^"; splice_chain "78647049^,78644747^";
chr10	juncbase	alternative_acceptor	35351990	35360127	.	-	.	gene_id "alternative_acceptor.159"; transcript_id "alternative_acceptor.159"; gene_name "CUFF.1233"; flanks "35351990-,35360127^"; structure "1-,2-"; splice_chain "35353044-,35351990-";
chr10	juncbase	cassette	532399	518489	.	-	.	gene_id "cassette.148"; transcript_id "cassette.148"; gene_name "CUFF.1201"; flanks "532399-,518489^"; structure "0,1-2^"; splice_chain ",530888-530721^";
chr10	juncbase	jcn_only_AA	35495979	35500584	.	+	.	gene_id "jcn_only_AA.228"; transcript_id "jcn_only_AA.228"; gene_name "CUFF.1234"; flanks "35495979-,35500584^"; structure "1-,2-"; splice_chain "35500182-,35500584-";
chr10	juncbase	cassette	412215	410522	.	-	.	gene_id "cassette.149"; transcript_id "cassette.149"; gene_name "CUFF.1201"; flanks "412215-,410522^"; structure "0,1-2^"; splice_chain ",410961-410755^";
chr10	juncbase	jcn_only_AA	46143982	46147414	.	-	.	gene_id "jcn_only_AA.229"; transcript_id "jcn_only_AA.229"; gene_name "CUFF.1242"; flanks "46143982-,46147414^"; structure "1-,2-"; splice_chain "46147073-,46143982-";
chr10	juncbase	alternative_donor	73970490	73963282	.	-	.	gene_id "alternative_donor.167"; transcript_id "alternative_donor.167"; gene_name "CUFF.1257,CUFF.1265"; flanks "73970490-,73963282^"; structure "1^,2^"; splice_chain "73970490^,73964180^";
chr10	juncbase	jcn_only_AA	17646046	17659082	.	-	.	gene_id "jcn_only_AA.230"; transcript_id "jcn_only_AA.230"; gene_name "CUFF.1220"; flanks "17646046-,17659082^"; structure "1-,2-"; splice_chain "17657963-,17646046-";
chr10	juncbase	cassette	70679737	70695762	.	+	.	gene_id "cassette.150"; transcript_id "cassette.150"; gene_name "CUFF.1251"; flanks "70679737-,70695762^"; structure "0,1-2^"; splice_chain ",70694555-70694674^";
chr10	juncbase	intron_retention	30302412	30301979	.	-	.	gene_id "intron_retention.256"; transcript_id "intron_retention.256"; gene_name "CUFF.1229"; flanks "30302412-,30301979^"; structure "0,1^2-"; splice_chain ",30302412^30301979-";
chr10	juncbase	alternative_acceptor	79396273	79397023	.	-	.	gene_id "alternative_acceptor.160"; transcript_id "alternative_acceptor.160"; gene_name "CUFF.1265"; flanks "79396273-,79397023^"; structure "1-,2-"; splice_chain "79396327-,79396273-";
chr10	juncbase	alternative_acceptor	79163781	79397023	.	-	.	gene_id "alternative_acceptor.161"; transcript_id "alternative_acceptor.161"; gene_name "CUFF.1265"; flanks "79163781-,79397023^"; structure "1-,2-"; splice_chain "79396327-,79163781-";
chr10	juncbase	alternative_acceptor	73975867	73975965	.	-	.	gene_id "alternative_acceptor.162"; transcript_id "alternative_acceptor.162"; gene_name "CUFF.1257"; flanks "73975867-,73975965^"; structure "1-,2-"; splice_chain "73975867-,73973089-";
chr10	juncbase	alternative_acceptor	73973035	73975965	.	-	.	gene_id "alternative_acceptor.163"; transcript_id "alternative_acceptor.163"; gene_name "CUFF.1257"; flanks "73973035-,73975965^"; structure "1-,2-"; splice_chain "73973089-,73973035-";
chr10	juncbase	alternative_acceptor	73975612	73975965	.	-	.	gene_id "alternative_acceptor.164"; transcript_id "alternative_acceptor.164"; gene_name "CUFF.1257"; flanks "73975612-,73975965^"; structure "1-,2-"; splice_chain "73975612-,73973089-";
chr10	juncbase	alternative_acceptor	73973109	73975965	.	-	.	gene_id "alternative_acceptor.165"; transcript_id "alternative_acceptor.165"; gene_name "CUFF.1257"; flanks "73973109-,73975965^"; structure "1-,2-"; splice_chain "73973109-,73973089-";
chr10	juncbase	jcn_only_AA	78709124	78713559	.	-	.	gene_id "jcn_only_AA.231"; transcript_id "jcn_only_AA.231"; gene_name "CUFF.1265"; flanks "78709124-,78713559^"; structure "1-,2-"; splice_chain "78711917-,78709124-";
chr10	juncbase	cassette	27065994	27059274	.	-	.	gene_id "cassette.151"; transcript_id "cassette.151"; gene_name "CUFF.1224"; flanks "27065994-,27059274^"; structure "0,1-2^"; splice_chain ",27060018-27060004^";
chr10	juncbase	jcn_only_AD	735434	532470	.	-	.	gene_id "jcn_only_AD.206"; transcript_id "jcn_only_AD.206"; gene_name "CUFF.1201"; flanks "735434-,532470^"; structure "1^,2^"; splice_chain "735434^,629529^";
chr10	juncbase	jcn_only_AD	74113100	74103269	.	-	.	gene_id "jcn_only_AD.207"; transcript_id "jcn_only_AD.207"; gene_name ""; flanks "74113100-,74103269^"; structure "1^,2^"; splice_chain "74113100^,74104708^";
chr10	juncbase	cassette	46158990	46147481	.	-	.	gene_id "cassette.152"; transcript_id "cassette.152"; gene_name "CUFF.1242"; flanks "46158990-,46147481^"; structure "0,1-2^"; splice_chain ",46148507-46148432^";
chr10	juncbase	cassette	123687359	123673408	.	-	.	gene_id "cassette.153"; transcript_id "cassette.153"; gene_name "CUFF.1308"; flanks "123687359-,123673408^"; structure "0,1-2^"; splice_chain ",123683844-123683781^";
chr10	juncbase	cassette	6263490	6265921	.	+	.	gene_id "cassette.154"; transcript_id "cassette.154"; gene_name "CUFF.1208"; flanks "6263490-,6265921^"; structure "0,1-2^"; splice_chain ",6264818-6264947^";
chr10	juncbase	jcn_only_AA	69918384	69925240	.	+	.	gene_id "jcn_only_AA.232"; transcript_id "jcn_only_AA.232"; gene_name ""; flanks "69918384-,69925240^"; structure "1-,2-"; splice_chain "69921486-,69925240-";
chr10	juncbase	alternative_donor	78647049	78637651	.	-	.	gene_id "alternative_donor.168"; transcript_id "alternative_donor.168"; gene_name ""; flanks "78647049-,78637651^"; structure "1^,2^"; splice_chain "78647049^,78644747^";
chr10	juncbase	alternative_acceptor	73975867	73975965	.	-	.	gene_id "alternative_acceptor.166"; transcript_id "alternative_acceptor.166"; gene_name "CUFF.1257"; flanks "73975867-,73975965^"; structure "1-,2-"; splice_chain "73975867-,73973109-";
chr10	juncbase	alternative_acceptor	73973089	73975965	.	-	.	gene_id "alternative_acceptor.167"; transcript_id "alternative_acceptor.167"; gene_name "CUFF.1257"; flanks "73973089-,73975965^"; structure "1-,2-"; splice_chain "73973109-,73973089-";
chr10	juncbase	alternative_acceptor	73973035	73975965	.	-	.	gene_id "alternative_acceptor.168"; transcript_id "alternative_acceptor.168"; gene_name "CUFF.1257"; flanks "73973035-,73975965^"; structure "1-,2-"; splice_chain "73973109-,73973035-";
chr10	juncbase	alternative_acceptor	73975612	73975965	.	-	.	gene_id "alternative_acceptor.169"; transcript_id "alternative_acceptor.169"; gene_name "CUFF.1257"; flanks "73975612-,73975965^"; structure "1-,2-"; splice_chain "73975612-,73973109-";
chr10	juncbase	cassette	35464633	35477128	.	+	.	gene_id "cassette.155"; transcript_id "cassette.155"; gene_name "CUFF.1234"; flanks "35464633-,35477128^"; structure "0,1-2^"; splice_chain ",35468062-35468204^";
chr10	juncbase	jcn_only_AD	73970490	73963282	.	-	.	gene_id "jcn_only_AD.208"; transcript_id "jcn_only_AD.208"; gene_name "CUFF.1257,CUFF.1265"; flanks "73970490-,73963282^"; structure "1^,2^"; splice_chain "73970490^,73964180^";
chr10	juncbase	jcn_only_AD	124186547	124189140	.	+	.	gene_id "jcn_only_AD.209"; transcript_id "jcn_only_AD.209"; gene_name ""; flanks "124186547-,124189140^"; structure "1^,2^"; splice_chain "124186547^,124187832^";
chr10	juncbase	jcn_only_AD	124187936	124189140	.	+	.	gene_id "jcn_only_AD.210"; transcript_id "jcn_only_AD.210"; gene_name ""; flanks "124187936-,124189140^"; structure "1^,2^"; splice_chain "124187832^,124187936^";
chr10	juncbase	jcn_only_AA	78669854	78674694	.	-	.	gene_id "jcn_only_AA.233"; transcript_id "jcn_only_AA.233"; gene_name "CUFF.1265"; flanks "78669854-,78674694^"; structure "1-,2-"; splice_chain "78673895-,78669854-";
chr10	juncbase	alternative_acceptor	78637648	78647049	.	-	.	gene_id "alternative_acceptor.170"; transcript_id "alternative_acceptor.170"; gene_name "CUFF.1265"; flanks "78637648-,78647049^"; structure "1-,2-"; splice_chain "78644775-,78637648-";
chr10	juncbase	alternative_acceptor	78637651	78647049	.	-	.	gene_id "alternative_acceptor.171"; transcript_id "alternative_acceptor.171"; gene_name "CUFF.1265"; flanks "78637651-,78647049^"; structure "1-,2-"; splice_chain "78644775-,78637651-";
chr10	juncbase	jcn_only_AD	96954434	96961742	.	+	.	gene_id "jcn_only_AD.211"; transcript_id "jcn_only_AD.211"; gene_name "CUFF.1280"; flanks "96954434-,96961742^"; structure "1^,2^"; splice_chain "96954434^,96961278^";
chr10	juncbase	cassette	18280232	18284585	.	+	.	gene_id "cassette.156"; transcript_id "cassette.156"; gene_name "CUFF.1221"; flanks "18280232-,18284585^"; structure "0,1-2^"; splice_chain ",18282110-18282220^";
chr10	juncbase	alternative_acceptor	69918384	69925240	.	+	.	gene_id "alternative_acceptor.172"; transcript_id "alternative_acceptor.172"; gene_name ""; flanks "69918384-,69925240^"; structure "1-,2-"; splice_chain "69921486-,69925240-";
chr10	juncbase	jcn_only_AD	124187832	124189140	.	+	.	gene_id "jcn_only_AD.212"; transcript_id "jcn_only_AD.212"; gene_name ""; flanks "124187832-,124189140^"; structure "1^,2^"; splice_chain "124187832^,124187936^";
chr10	juncbase	jcn_only_AD	124186547	124189140	.	+	.	gene_id "jcn_only_AD.213"; transcript_id "jcn_only_AD.213"; gene_name ""; flanks "124186547-,124189140^"; structure "1^,2^"; splice_chain "124186547^,124187936^";
chr10	juncbase	alternative_donor	73887840	73857208	.	-	.	gene_id "alternative_donor.169"; transcript_id "alternative_donor.169"; gene_name "CUFF.1257"; flanks "73887840-,73857208^"; structure "1^,2^"; splice_chain "73887840^,73862092^";
chr10	juncbase	alternative_donor	73862608	73857208	.	-	.	gene_id "alternative_donor.170"; transcript_id "alternative_donor.170"; gene_name "CUFF.1257"; flanks "73862608-,73857208^"; structure "1^,2^"; splice_chain "73862608^,73862092^";
chr10	juncbase	intron_retention	74095592	74094375	.	-	.	gene_id "intron_retention.257"; transcript_id "intron_retention.257"; gene_name "CUFF.1258"; flanks "74095592-,74094375^"; structure "0,1^2-"; splice_chain ",74095592^74094375-";
chr10	juncbase	jcn_only_AA	35349852	35351888	.	-	.	gene_id "jcn_only_AA.234"; transcript_id "jcn_only_AA.234"; gene_name "CUFF.1233"; flanks "35349852-,35351888^"; structure "1-,2-"; splice_chain "35349896-,35349852-";
chr10	juncbase	cassette	6265983	6268155	.	+	.	gene_id "cassette.157"; transcript_id "cassette.157"; gene_name "CUFF.1208"; flanks "6265983-,6268155^"; structure "0,1-2^"; splice_chain ",6266112-6266176^";
chr10	juncbase	jcn_only_AA	78644775	78647049	.	-	.	gene_id "jcn_only_AA.235"; transcript_id "jcn_only_AA.235"; gene_name "CUFF.1265"; flanks "78644775-,78647049^"; structure "1-,2-"; splice_chain "78644775-,78637648-";
chr10	juncbase	jcn_only_AA	78637651	78647049	.	-	.	gene_id "jcn_only_AA.236"; transcript_id "jcn_only_AA.236"; gene_name "CUFF.1265"; flanks "78637651-,78647049^"; structure "1-,2-"; splice_chain "78637651-,78637648-";
chr10	juncbase	jcn_only_AD	78674694	78669854	.	-	.	gene_id "jcn_only_AD.214"; transcript_id "jcn_only_AD.214"; gene_name "CUFF.1220,CUFF.1265"; flanks "78674694-,78669854^"; structure "1^,2^"; splice_chain "78674694^,78673815^";
chr10	juncbase	alternative_acceptor	79396327	79397023	.	-	.	gene_id "alternative_acceptor.173"; transcript_id "alternative_acceptor.173"; gene_name "CUFF.1265"; flanks "79396327-,79397023^"; structure "1-,2-"; splice_chain "79396327-,79163781-";
chr10	juncbase	alternative_acceptor	79396273	79397023	.	-	.	gene_id "alternative_acceptor.174"; transcript_id "alternative_acceptor.174"; gene_name "CUFF.1265"; flanks "79396273-,79397023^"; structure "1-,2-"; splice_chain "79396273-,79163781-";
chr10	juncbase	alternative_acceptor	35495979	35500584	.	+	.	gene_id "alternative_acceptor.175"; transcript_id "alternative_acceptor.175"; gene_name "CUFF.1234"; flanks "35495979-,35500584^"; structure "1-,2-"; splice_chain "35500182-,35500584-";
chr10	juncbase	cassette	106976880	106982874	.	+	.	gene_id "cassette.158"; transcript_id "cassette.158"; gene_name "CUFF.1287"; flanks "106976880-,106982874^"; structure "0,1-2^"; splice_chain ",106977602-106977723^";
chr10	juncbase	jcn_only_AA	73956747	73972945	.	-	.	gene_id "jcn_only_AA.237"; transcript_id "jcn_only_AA.237"; gene_name "CUFF.1257"; flanks "73956747-,73972945^"; structure "1-,2-"; splice_chain "73970589-,73956747-";
chr10	juncbase	jcn_only_AA	73972043	73972945	.	-	.	gene_id "jcn_only_AA.238"; transcript_id "jcn_only_AA.238"; gene_name "CUFF.1257"; flanks "73972043-,73972945^"; structure "1-,2-"; splice_chain "73972043-,73970589-";
chr10	juncbase	jcn_only_AA	6259154	6261532	.	+	.	gene_id "jcn_only_AA.239"; transcript_id "jcn_only_AA.239"; gene_name "CUFF.1208"; flanks "6259154-,6261532^"; structure "1-,2-"; splice_chain "6261482-,6261532-";
chr10	juncbase	alternative_donor	124157490	124172436	.	+	.	gene_id "alternative_donor.171"; transcript_id "alternative_donor.171"; gene_name "CUFF.1309"; flanks "124157490-,124172436^"; structure "1^,2^"; splice_chain "124157490^,124166189^";
chr10	juncbase	alternative_acceptor	5123093	5138602	.	+	.	gene_id "alternative_acceptor.176"; transcript_id "alternative_acceptor.176"; gene_name "CUFF.1205"; flanks "5123093-,5138602^"; structure "1-,2-"; splice_chain "5123874-,5138602-";
chr10	juncbase	jcn_only_AD	46147414	46143982	.	-	.	gene_id "jcn_only_AD.215"; transcript_id "jcn_only_AD.215"; gene_name "CUFF.1242,CUFF.1258"; flanks "46147414-,46143982^"; structure "1^,2^"; splice_chain "46147414^,46145180^";
chr10	juncbase	jcn_only_AA	80722643	80808531	.	-	.	gene_id "jcn_only_AA.240"; transcript_id "jcn_only_AA.240"; gene_name "CUFF.1270"; flanks "80722643-,80808531^"; structure "1-,2-"; splice_chain "80804269-,80722643-";
chr10	juncbase	cassette	123670421	123659509	.	-	.	gene_id "cassette.159"; transcript_id "cassette.159"; gene_name "CUFF.1308"; flanks "123670421-,123659509^"; structure "0,1-2^"; splice_chain ",123662135-123661906^";
chr10	juncbase	jcn_only_AD	124145703	124151819	.	+	.	gene_id "jcn_only_AD.216"; transcript_id "jcn_only_AD.216"; gene_name ""; flanks "124145703-,124151819^"; structure "1^,2^"; splice_chain "124145703^,124147499^";
chr10	juncbase	jcn_only_AD	124134477	124151819	.	+	.	gene_id "jcn_only_AD.217"; transcript_id "jcn_only_AD.217"; gene_name ""; flanks "124134477-,124151819^"; structure "1^,2^"; splice_chain "124134477^,124147499^";
chr10	juncbase	alternative_acceptor	70673035	70673147	.	+	.	gene_id "alternative_acceptor.177"; transcript_id "alternative_acceptor.177"; gene_name "CUFF.1251"; flanks "70673035-,70673147^"; structure "1-,2-"; splice_chain "70673106-,70673147-";
chr10	juncbase	jcn_only_AA	35351990	35360127	.	-	.	gene_id "jcn_only_AA.241"; transcript_id "jcn_only_AA.241"; gene_name "CUFF.1233"; flanks "35351990-,35360127^"; structure "1-,2-"; splice_chain "35353044-,35351990-";
chr10	juncbase	jcn_only_AD	25305621	25310671	.	+	.	gene_id "jcn_only_AD.218"; transcript_id "jcn_only_AD.218"; gene_name "CUFF.1223"; flanks "25305621-,25310671^"; structure "1^,2^"; splice_chain "25305621^,25305718^";
chr10	juncbase	jcn_only_AD	73972945	73956747	.	-	.	gene_id "jcn_only_AD.219"; transcript_id "jcn_only_AD.219"; gene_name ""; flanks "73972945-,73956747^"; structure "1^,2^"; splice_chain "73972945^,73963185^";
chr10	juncbase	jcn_only_AD	73958207	73956747	.	-	.	gene_id "jcn_only_AD.220"; transcript_id "jcn_only_AD.220"; gene_name ""; flanks "73958207-,73956747^"; structure "1^,2^"; splice_chain "73963185^,73958207^";
chr10	juncbase	intron_retention	73975965	73973109	.	-	.	gene_id "intron_retention.258"; transcript_id "intron_retention.258"; gene_name ""; flanks "73975965-,73973109^"; structure "0,1^2-"; splice_chain ",73975965^73973109-";
chr10	juncbase	alternative_acceptor	73857208	73887840	.	-	.	gene_id "alternative_acceptor.178"; transcript_id "alternative_acceptor.178"; gene_name "CUFF.1257"; flanks "73857208-,73887840^"; structure "1-,2-"; splice_chain "73862725-,73857208-";
chr10	juncbase	alternative_acceptor	73862170	73887840	.	-	.	gene_id "alternative_acceptor.179"; transcript_id "alternative_acceptor.179"; gene_name "CUFF.1257"; flanks "73862170-,73887840^"; structure "1-,2-"; splice_chain "73862725-,73862170-";
chr10	juncbase	jcn_only_AA	73956747	73963185	.	-	.	gene_id "jcn_only_AA.242"; transcript_id "jcn_only_AA.242"; gene_name "CUFF.1257"; flanks "73956747-,73963185^"; structure "1-,2-"; splice_chain "73958423-,73956747-";
chr10	juncbase	jcn_only_AD	78647049	78637651	.	-	.	gene_id "jcn_only_AD.221"; transcript_id "jcn_only_AD.221"; gene_name ""; flanks "78647049-,78637651^"; structure "1^,2^"; splice_chain "78647049^,78644747^";
chr10	juncbase	alternative_acceptor	78644775	78647049	.	-	.	gene_id "alternative_acceptor.180"; transcript_id "alternative_acceptor.180"; gene_name "CUFF.1265"; flanks "78644775-,78647049^"; structure "1-,2-"; splice_chain "78644775-,78637651-";
chr10	juncbase	alternative_acceptor	78637648	78647049	.	-	.	gene_id "alternative_acceptor.181"; transcript_id "alternative_acceptor.181"; gene_name "CUFF.1265"; flanks "78637648-,78647049^"; structure "1-,2-"; splice_chain "78637651-,78637648-";
chr10	juncbase	cassette	101507147	101514286	.	+	.	gene_id "cassette.160"; transcript_id "cassette.160"; gene_name "CUFF.1283"; flanks "101507147-,101514286^"; structure "0,1-2^"; splice_chain ",101510126-101510153^";
chr10	juncbase	intron_retention	35437419	35464781	.	+	.	gene_id "intron_retention.259"; transcript_id "intron_retention.259"; gene_name ""; flanks "35437419-,35464781^"; structure "0,1^2-"; splice_chain ",35437419^35464781-";
chr10	juncbase	jcn_only_AA	73973089	73975965	.	-	.	gene_id "jcn_only_AA.243"; transcript_id "jcn_only_AA.243"; gene_name "CUFF.1257"; flanks "73973089-,73975965^"; structure "1-,2-"; splice_chain "73975867-,73973089-";
chr10	juncbase	jcn_only_AA	73973035	73975965	.	-	.	gene_id "jcn_only_AA.244"; transcript_id "jcn_only_AA.244"; gene_name "CUFF.1257"; flanks "73973035-,73975965^"; structure "1-,2-"; splice_chain "73975867-,73973035-";
chr10	juncbase	jcn_only_AA	73975612	73975965	.	-	.	gene_id "jcn_only_AA.245"; transcript_id "jcn_only_AA.245"; gene_name "CUFF.1257"; flanks "73975612-,73975965^"; structure "1-,2-"; splice_chain "73975867-,73975612-";
chr10	juncbase	jcn_only_AA	73973109	73975965	.	-	.	gene_id "jcn_only_AA.246"; transcript_id "jcn_only_AA.246"; gene_name "CUFF.1257"; flanks "73973109-,73975965^"; structure "1-,2-"; splice_chain "73975867-,73973109-";
chr10	juncbase	cassette	135061295	135060554	.	-	.	gene_id "cassette.161"; transcript_id "cassette.161"; gene_name "CUFF.1314"; flanks "135061295-,135060554^"; structure "0,1-2^"; splice_chain ",135061205-135061058^";
chr10	juncbase	cassette	123661906	123629553	.	-	.	gene_id "cassette.162"; transcript_id "cassette.162"; gene_name "CUFF.1308"; flanks "123661906-,123629553^"; structure "0,1-2^"; splice_chain ",123658484-123658356^";
chr10	juncbase	jcn_only_AD	124145703	124151819	.	+	.	gene_id "jcn_only_AD.222"; transcript_id "jcn_only_AD.222"; gene_name ""; flanks "124145703-,124151819^"; structure "1^,2^"; splice_chain "124134477^,124145703^";
chr10	juncbase	jcn_only_AD	124147499	124151819	.	+	.	gene_id "jcn_only_AD.223"; transcript_id "jcn_only_AD.223"; gene_name ""; flanks "124147499-,124151819^"; structure "1^,2^"; splice_chain "124134477^,124147499^";
chr10	juncbase	jcn_only_AA	73857208	73862608	.	-	.	gene_id "jcn_only_AA.247"; transcript_id "jcn_only_AA.247"; gene_name ""; flanks "73857208-,73862608^"; structure "1-,2-"; splice_chain "73862170-,73857208-";
chr10	juncbase	jcn_only_AD	78649209	78647273	.	-	.	gene_id "jcn_only_AD.224"; transcript_id "jcn_only_AD.224"; gene_name "CUFF.1265,CUFF.1312"; flanks "78649209-,78647273^"; structure "1^,2^"; splice_chain "78649209^,78647553^";
chr10	juncbase	jcn_only_AD	106937824	106959757	.	+	.	gene_id "jcn_only_AD.225"; transcript_id "jcn_only_AD.225"; gene_name "CUFF.1287"; flanks "106937824-,106959757^"; structure "1^,2^"; splice_chain "106937824^,106937931^";
chr10	juncbase	jcn_only_AD	96961942	96966965	.	+	.	gene_id "jcn_only_AD.226"; transcript_id "jcn_only_AD.226"; gene_name "CUFF.1280"; flanks "96961942-,96966965^"; structure "1^,2^"; splice_chain "96961942^,96961952^";
chr10	juncbase	alternative_acceptor	35349852	35351888	.	-	.	gene_id "alternative_acceptor.182"; transcript_id "alternative_acceptor.182"; gene_name "CUFF.1233"; flanks "35349852-,35351888^"; structure "1-,2-"; splice_chain "35349896-,35349852-";
chr10	juncbase	jcn_only_AA	73862170	73887840	.	-	.	gene_id "jcn_only_AA.248"; transcript_id "jcn_only_AA.248"; gene_name "CUFF.1257"; flanks "73862170-,73887840^"; structure "1-,2-"; splice_chain "73862170-,73857208-";
chr10	juncbase	jcn_only_AA	73862725	73887840	.	-	.	gene_id "jcn_only_AA.249"; transcript_id "jcn_only_AA.249"; gene_name "CUFF.1257"; flanks "73862725-,73887840^"; structure "1-,2-"; splice_chain "73862725-,73857208-";
chr10	juncbase	alternative_acceptor	73862170	73887840	.	-	.	gene_id "alternative_acceptor.183"; transcript_id "alternative_acceptor.183"; gene_name "CUFF.1257"; flanks "73862170-,73887840^"; structure "1-,2-"; splice_chain "73862170-,73857208-";
chr10	juncbase	alternative_acceptor	73862725	73887840	.	-	.	gene_id "alternative_acceptor.184"; transcript_id "alternative_acceptor.184"; gene_name "CUFF.1257"; flanks "73862725-,73887840^"; structure "1-,2-"; splice_chain "73862725-,73857208-";
chr10	juncbase	alternative_acceptor	73857208	73862608	.	-	.	gene_id "alternative_acceptor.185"; transcript_id "alternative_acceptor.185"; gene_name ""; flanks "73857208-,73862608^"; structure "1-,2-"; splice_chain "73862170-,73857208-";
chr10	juncbase	jcn_only_AA	73972043	73972945	.	-	.	gene_id "jcn_only_AA.250"; transcript_id "jcn_only_AA.250"; gene_name "CUFF.1257"; flanks "73972043-,73972945^"; structure "1-,2-"; splice_chain "73972043-,73956747-";
chr10	juncbase	jcn_only_AA	73970589	73972945	.	-	.	gene_id "jcn_only_AA.251"; transcript_id "jcn_only_AA.251"; gene_name "CUFF.1257"; flanks "73970589-,73972945^"; structure "1-,2-"; splice_chain "73970589-,73956747-";
chr10	juncbase	cassette	123661906	123629553	.	-	.	gene_id "cassette.163"; transcript_id "cassette.163"; gene_name "CUFF.1308"; flanks "123661906-,123629553^"; structure "0,1-2^"; splice_chain ",123659509-123659381^";
chr10	juncbase	alternative_acceptor	27112234	27149676	.	-	.	gene_id "alternative_acceptor.186"; transcript_id "alternative_acceptor.186"; gene_name "CUFF.1224"; flanks "27112234-,27149676^"; structure "1-,2-"; splice_chain "27128712-,27112234-";
chr10	juncbase	cassette	35468204	35490379	.	+	.	gene_id "cassette.164"; transcript_id "cassette.164"; gene_name "CUFF.1234"; flanks "35468204-,35490379^"; structure "0,1-2^"; splice_chain ",35477128-35477316^";
chr10	juncbase	cassette	35468204	35495823	.	+	.	gene_id "cassette.165"; transcript_id "cassette.165"; gene_name "CUFF.1234"; flanks "35468204-,35495823^"; structure "0,1-2^"; splice_chain ",35477128-35477316^";
chr10	juncbase	jcn_only_AA	18280232	18282113	.	+	.	gene_id "jcn_only_AA.252"; transcript_id "jcn_only_AA.252"; gene_name "CUFF.1221"; flanks "18280232-,18282113^"; structure "1-,2-"; splice_chain "18282110-,18282113-";
chr10	juncbase	jcn_only_AA	78637648	78644747	.	-	.	gene_id "jcn_only_AA.253"; transcript_id "jcn_only_AA.253"; gene_name "CUFF.1265"; flanks "78637648-,78644747^"; structure "1-,2-"; splice_chain "78637651-,78637648-";
chr10	juncbase	jcn_only_AD	78647049	78637648	.	-	.	gene_id "jcn_only_AD.227"; transcript_id "jcn_only_AD.227"; gene_name "CUFF.1265"; flanks "78647049-,78637648^"; structure "1^,2^"; splice_chain "78647049^,78644747^";
chr10	juncbase	cassette	70661227	70666467	.	+	.	gene_id "cassette.166"; transcript_id "cassette.166"; gene_name "CUFF.1251"; flanks "70661227-,70666467^"; structure "0,1-2^"; splice_chain ",70665982-70666093^";
chr10	juncbase	intron_retention	73975965	73975612	.	-	.	gene_id "intron_retention.260"; transcript_id "intron_retention.260"; gene_name ""; flanks "73975965-,73975612^"; structure "0,1^2-"; splice_chain ",73975965^73975612-";
chr10	juncbase	cassette	73921296	73892939	.	-	.	gene_id "cassette.167"; transcript_id "cassette.167"; gene_name "CUFF.1257"; flanks "73921296-,73892939^"; structure "0,1-2^"; splice_chain ",73912746-73912627^";
chr10	juncbase	jcn_only_AD	73963185	73956747	.	-	.	gene_id "jcn_only_AD.228"; transcript_id "jcn_only_AD.228"; gene_name "CUFF.1257"; flanks "73963185-,73956747^"; structure "1^,2^"; splice_chain "73963185^,73958207^";
chr10	juncbase	jcn_only_AD	73972945	73956747	.	-	.	gene_id "jcn_only_AD.229"; transcript_id "jcn_only_AD.229"; gene_name "CUFF.1257"; flanks "73972945-,73956747^"; structure "1^,2^"; splice_chain "73972945^,73958207^";
chr10	juncbase	jcn_only_AA	73975867	73975965	.	-	.	gene_id "jcn_only_AA.254"; transcript_id "jcn_only_AA.254"; gene_name "CUFF.1257"; flanks "73975867-,73975965^"; structure "1-,2-"; splice_chain "73975867-,73975612-";
chr10	juncbase	jcn_only_AA	73973089	73975965	.	-	.	gene_id "jcn_only_AA.255"; transcript_id "jcn_only_AA.255"; gene_name "CUFF.1257"; flanks "73973089-,73975965^"; structure "1-,2-"; splice_chain "73975612-,73973089-";
chr10	juncbase	jcn_only_AA	73973035	73975965	.	-	.	gene_id "jcn_only_AA.256"; transcript_id "jcn_only_AA.256"; gene_name "CUFF.1257"; flanks "73973035-,73975965^"; structure "1-,2-"; splice_chain "73975612-,73973035-";
chr10	juncbase	jcn_only_AA	73973109	73975965	.	-	.	gene_id "jcn_only_AA.257"; transcript_id "jcn_only_AA.257"; gene_name "CUFF.1257"; flanks "73973109-,73975965^"; structure "1-,2-"; splice_chain "73975612-,73973109-";
chr10	juncbase	jcn_only_AD	17645559	17636382	.	-	.	gene_id "jcn_only_AD.230"; transcript_id "jcn_only_AD.230"; gene_name "CUFF.1220"; flanks "17645559-,17636382^"; structure "1^,2^"; splice_chain "17645559^,17641289^";
chr10	juncbase	jcn_only_AD	35437419	35467800	.	+	.	gene_id "jcn_only_AD.231"; transcript_id "jcn_only_AD.231"; gene_name ""; flanks "35437419-,35467800^"; structure "1^,2^"; splice_chain "35437419^,35464633^";
chr10	juncbase	jcn_only_AA	98092353	98095651	.	+	.	gene_id "jcn_only_AA.258"; transcript_id "jcn_only_AA.258"; gene_name "CUFF.1282"; flanks "98092353-,98095651^"; structure "1-,2-"; splice_chain "98095648-,98095651-";
chr10	juncbase	jcn_only_AD	124157490	124172436	.	+	.	gene_id "jcn_only_AD.232"; transcript_id "jcn_only_AD.232"; gene_name "CUFF.1309"; flanks "124157490-,124172436^"; structure "1^,2^"; splice_chain "124157490^,124166189^";
chr10	juncbase	jcn_only_AA	78799395	78832855	.	-	.	gene_id "jcn_only_AA.259"; transcript_id "jcn_only_AA.259"; gene_name "CUFF.1265"; flanks "78799395-,78832855^"; structure "1-,2-"; splice_chain "78823901-,78799395-";
chr10	juncbase	jcn_only_AA	78831403	78832855	.	-	.	gene_id "jcn_only_AA.260"; transcript_id "jcn_only_AA.260"; gene_name "CUFF.1265"; flanks "78831403-,78832855^"; structure "1-,2-"; splice_chain "78831403-,78823901-";
chr10	juncbase	cassette	69583072	69571421	.	-	.	gene_id "cassette.168"; transcript_id "cassette.168"; gene_name "CUFF.1248"; flanks "69583072-,69571421^"; structure "0,1-2^"; splice_chain ",69575891-69575798^";
chr10	juncbase	alternative_donor	96954434	96961742	.	+	.	gene_id "alternative_donor.172"; transcript_id "alternative_donor.172"; gene_name "CUFF.1280"; flanks "96954434-,96961742^"; structure "1^,2^"; splice_chain "96954434^,96961278^";
chr10	juncbase	alternative_donor	73921296	73912746	.	-	.	gene_id "alternative_donor.173"; transcript_id "alternative_donor.173"; gene_name "CUFF.1257"; flanks "73921296-,73912746^"; structure "1^,2^"; splice_chain "73921296^,73918704^";
chr10	juncbase	cassette	6263490	6264818	.	+	.	gene_id "cassette.169"; transcript_id "cassette.169"; gene_name "CUFF.1208"; flanks "6263490-,6264818^"; structure "0,1-2^"; splice_chain ",6263604-6263708^";
chr10	juncbase	jcn_only_AA	73975867	73975965	.	-	.	gene_id "jcn_only_AA.261"; transcript_id "jcn_only_AA.261"; gene_name "CUFF.1257"; flanks "73975867-,73975965^"; structure "1-,2-"; splice_chain "73975867-,73973035-";
chr10	juncbase	jcn_only_AA	73973089	73975965	.	-	.	gene_id "jcn_only_AA.262"; transcript_id "jcn_only_AA.262"; gene_name "CUFF.1257"; flanks "73973089-,73975965^"; structure "1-,2-"; splice_chain "73973089-,73973035-";
chr10	juncbase	jcn_only_AA	73975612	73975965	.	-	.	gene_id "jcn_only_AA.263"; transcript_id "jcn_only_AA.263"; gene_name "CUFF.1257"; flanks "73975612-,73975965^"; structure "1-,2-"; splice_chain "73975612-,73973035-";
chr10	juncbase	jcn_only_AA	73973109	73975965	.	-	.	gene_id "jcn_only_AA.264"; transcript_id "jcn_only_AA.264"; gene_name "CUFF.1257"; flanks "73973109-,73975965^"; structure "1-,2-"; splice_chain "73973109-,73973035-";
chr10	juncbase	alternative_donor	46167698	46159290	.	-	.	gene_id "alternative_donor.174"; transcript_id "alternative_donor.174"; gene_name "CUFF.1242"; flanks "46167698-,46159290^"; structure "1^,2^"; splice_chain "46167720^,46167698^";
chr10	juncbase	alternative_donor	46168127	46159290	.	-	.	gene_id "alternative_donor.175"; transcript_id "alternative_donor.175"; gene_name "CUFF.1242"; flanks "46168127-,46159290^"; structure "1^,2^"; splice_chain "46168127^,46167720^";
chr10	juncbase	alternative_donor	46147414	46143982	.	-	.	gene_id "alternative_donor.176"; transcript_id "alternative_donor.176"; gene_name "CUFF.1242,CUFF.1258"; flanks "46147414-,46143982^"; structure "1^,2^"; splice_chain "46147414^,46145180^";
chr10	juncbase	cassette	60037082	60047321	.	+	.	gene_id "cassette.170"; transcript_id "cassette.170"; gene_name "CUFF.1246"; flanks "60037082-,60047321^"; structure "0,1-2^"; splice_chain ",60042659-60042842^";
chr10	juncbase	jcn_only_AA	73956747	73972945	.	-	.	gene_id "jcn_only_AA.265"; transcript_id "jcn_only_AA.265"; gene_name "CUFF.1257"; flanks "73956747-,73972945^"; structure "1-,2-"; splice_chain "73972043-,73956747-";
chr10	juncbase	jcn_only_AA	73970589	73972945	.	-	.	gene_id "jcn_only_AA.266"; transcript_id "jcn_only_AA.266"; gene_name "CUFF.1257"; flanks "73970589-,73972945^"; structure "1-,2-"; splice_chain "73972043-,73970589-";
chr10	juncbase	alternative_donor	735434	532470	.	-	.	gene_id "alternative_donor.177"; transcript_id "alternative_donor.177"; gene_name "CUFF.1201"; flanks "735434-,532470^"; structure "1^,2^"; splice_chain "735434^,629529^";
chr10	juncbase	jcn_only_AD	73887840	73857208	.	-	.	gene_id "jcn_only_AD.233"; transcript_id "jcn_only_AD.233"; gene_name "CUFF.1257"; flanks "73887840-,73857208^"; structure "1^,2^"; splice_chain "73887840^,73862092^";
chr10	juncbase	jcn_only_AD	73862608	73857208	.	-	.	gene_id "jcn_only_AD.234"; transcript_id "jcn_only_AD.234"; gene_name "CUFF.1257"; flanks "73862608-,73857208^"; structure "1^,2^"; splice_chain "73862608^,73862092^";
chr10	juncbase	alternative_acceptor	73975867	73975965	.	-	.	gene_id "alternative_acceptor.187"; transcript_id "alternative_acceptor.187"; gene_name "CUFF.1257"; flanks "73975867-,73975965^"; structure "1-,2-"; splice_chain "73975867-,73975612-";
chr10	juncbase	alternative_acceptor	73973089	73975965	.	-	.	gene_id "alternative_acceptor.188"; transcript_id "alternative_acceptor.188"; gene_name "CUFF.1257"; flanks "73973089-,73975965^"; structure "1-,2-"; splice_chain "73975612-,73973089-";
chr10	juncbase	alternative_acceptor	73973035	73975965	.	-	.	gene_id "alternative_acceptor.189"; transcript_id "alternative_acceptor.189"; gene_name "CUFF.1257"; flanks "73973035-,73975965^"; structure "1-,2-"; splice_chain "73975612-,73973035-";
chr10	juncbase	alternative_acceptor	73973109	73975965	.	-	.	gene_id "alternative_acceptor.190"; transcript_id "alternative_acceptor.190"; gene_name "CUFF.1257"; flanks "73973109-,73975965^"; structure "1-,2-"; splice_chain "73975612-,73973109-";
chr10	juncbase	cassette	35302627	35299370	.	-	.	gene_id "cassette.171"; transcript_id "cassette.171"; gene_name "CUFF.1233"; flanks "35302627-,35299370^"; structure "0,1-2^"; splice_chain ",35300892-35300776^";
chr10	juncbase	jcn_only_AD	73887840	73857208	.	-	.	gene_id "jcn_only_AD.235"; transcript_id "jcn_only_AD.235"; gene_name "CUFF.1257"; flanks "73887840-,73857208^"; structure "1^,2^"; splice_chain "73887840^,73862608^";
chr10	juncbase	jcn_only_AD	73862092	73857208	.	-	.	gene_id "jcn_only_AD.236"; transcript_id "jcn_only_AD.236"; gene_name "CUFF.1257"; flanks "73862092-,73857208^"; structure "1^,2^"; splice_chain "73862608^,73862092^";
chr10	juncbase	alternative_donor	25305621	25310671	.	+	.	gene_id "alternative_donor.178"; transcript_id "alternative_donor.178"; gene_name "CUFF.1223"; flanks "25305621-,25310671^"; structure "1^,2^"; splice_chain "25305621^,25305718^";
chr10	juncbase	alternative_donor	74113100	74103269	.	-	.	gene_id "alternative_donor.179"; transcript_id "alternative_donor.179"; gene_name ""; flanks "74113100-,74103269^"; structure "1^,2^"; splice_chain "74113100^,74104708^";
chr10	juncbase	jcn_only_AA	73963282	73970490	.	-	.	gene_id "jcn_only_AA.267"; transcript_id "jcn_only_AA.267"; gene_name "CUFF.1257"; flanks "73963282-,73970490^"; structure "1-,2-"; splice_chain "73964263-,73963282-";
chr10	juncbase	alternative_donor	80814353	80808689	.	-	.	gene_id "alternative_donor.180"; transcript_id "alternative_donor.180"; gene_name "CUFF.1308"; flanks "80814353-,80808689^"; structure "1^,2^"; splice_chain "80814353^,80810039^";
chr10	juncbase	jcn_only_AA	73975867	73975965	.	-	.	gene_id "jcn_only_AA.268"; transcript_id "jcn_only_AA.268"; gene_name "CUFF.1257"; flanks "73975867-,73975965^"; structure "1-,2-"; splice_chain "73975867-,73973109-";
chr10	juncbase	jcn_only_AA	73973089	73975965	.	-	.	gene_id "jcn_only_AA.269"; transcript_id "jcn_only_AA.269"; gene_name "CUFF.1257"; flanks "73973089-,73975965^"; structure "1-,2-"; splice_chain "73973109-,73973089-";
chr10	juncbase	jcn_only_AA	73973035	73975965	.	-	.	gene_id "jcn_only_AA.270"; transcript_id "jcn_only_AA.270"; gene_name "CUFF.1257"; flanks "73973035-,73975965^"; structure "1-,2-"; splice_chain "73973109-,73973035-";
chr10	juncbase	jcn_only_AA	73975612	73975965	.	-	.	gene_id "jcn_only_AA.271"; transcript_id "jcn_only_AA.271"; gene_name "CUFF.1257"; flanks "73975612-,73975965^"; structure "1-,2-"; splice_chain "73975612-,73973109-";
chr10	juncbase	alternative_donor	46167698	46159290	.	-	.	gene_id "alternative_donor.181"; transcript_id "alternative_donor.181"; gene_name "CUFF.1242"; flanks "46167698-,46159290^"; structure "1^,2^"; splice_chain "46168127^,46167698^";
chr10	juncbase	alternative_donor	46167720	46159290	.	-	.	gene_id "alternative_donor.182"; transcript_id "alternative_donor.182"; gene_name "CUFF.1242"; flanks "46167720-,46159290^"; structure "1^,2^"; splice_chain "46168127^,46167720^";
chr10	juncbase	jcn_only_AA	79396327	79397023	.	-	.	gene_id "jcn_only_AA.272"; transcript_id "jcn_only_AA.272"; gene_name "CUFF.1265"; flanks "79396327-,79397023^"; structure "1-,2-"; splice_chain "79396327-,79163781-";
chr10	juncbase	jcn_only_AA	79396273	79397023	.	-	.	gene_id "jcn_only_AA.273"; transcript_id "jcn_only_AA.273"; gene_name "CUFF.1265"; flanks "79396273-,79397023^"; structure "1-,2-"; splice_chain "79396273-,79163781-";
chr10	juncbase	cassette	18280232	18284585	.	+	.	gene_id "cassette.172"; transcript_id "cassette.172"; gene_name "CUFF.1221"; flanks "18280232-,18284585^"; structure "0,1-2^"; splice_chain ",18282113-18282220^";
chr10	juncbase	jcn_only_AD	46167698	46159290	.	-	.	gene_id "jcn_only_AD.237"; transcript_id "jcn_only_AD.237"; gene_name "CUFF.1242"; flanks "46167698-,46159290^"; structure "1^,2^"; splice_chain "46167720^,46167698^";
chr10	juncbase	jcn_only_AD	46168127	46159290	.	-	.	gene_id "jcn_only_AD.238"; transcript_id "jcn_only_AD.238"; gene_name "CUFF.1242"; flanks "46168127-,46159290^"; structure "1^,2^"; splice_chain "46168127^,46167720^";
chr10	juncbase	alternative_donor	106937824	106959757	.	+	.	gene_id "alternative_donor.183"; transcript_id "alternative_donor.183"; gene_name "CUFF.1287"; flanks "106937824-,106959757^"; structure "1^,2^"; splice_chain "106937824^,106937931^";
chr10	juncbase	jcn_only_AA	78831403	78832855	.	-	.	gene_id "jcn_only_AA.274"; transcript_id "jcn_only_AA.274"; gene_name "CUFF.1265"; flanks "78831403-,78832855^"; structure "1-,2-"; splice_chain "78831403-,78799395-";
chr10	juncbase	jcn_only_AA	78823901	78832855	.	-	.	gene_id "jcn_only_AA.275"; transcript_id "jcn_only_AA.275"; gene_name "CUFF.1265"; flanks "78823901-,78832855^"; structure "1-,2-"; splice_chain "78823901-,78799395-";
chr10	juncbase	intron_retention	35379358	35360267	.	-	.	gene_id "intron_retention.261"; transcript_id "intron_retention.261"; gene_name "CUFF.1233"; flanks "35379358-,35360267^"; structure "0,1^2-"; splice_chain ",35379358^35360267-";
chr10	juncbase	jcn_only_AA	35360267	35379107	.	-	.	gene_id "jcn_only_AA.276"; transcript_id "jcn_only_AA.276"; gene_name "CUFF.1233"; flanks "35360267-,35379107^"; structure "1-,2-"; splice_chain "35378929-,35360267-";
chr10	juncbase	cassette	35464633	35468062	.	+	.	gene_id "cassette.173"; transcript_id "cassette.173"; gene_name "CUFF.1234"; flanks "35464633-,35468062^"; structure "0,1-2^"; splice_chain ",35467817-35467914^";
chr10	juncbase	alternative_donor	74095592	74094375	.	-	.	gene_id "alternative_donor.184"; transcript_id "alternative_donor.184"; gene_name "CUFF.1258,CUFF.1261"; flanks "74095592-,74094375^"; structure "1^,2^"; splice_chain "74095592^,74095538^";
chr10	juncbase	alternative_acceptor	123503373	123549684	.	-	.	gene_id "alternative_acceptor.191"; transcript_id "alternative_acceptor.191"; gene_name "CUFF.1308"; flanks "123503373-,123549684^"; structure "1-,2-"; splice_chain "123542214-,123503373-";
chr10	juncbase	alternative_acceptor	73973089	73975965	.	-	.	gene_id "alternative_acceptor.192"; transcript_id "alternative_acceptor.192"; gene_name "CUFF.1257"; flanks "73973089-,73975965^"; structure "1-,2-"; splice_chain "73975867-,73973089-";
chr10	juncbase	alternative_acceptor	73973035	73975965	.	-	.	gene_id "alternative_acceptor.193"; transcript_id "alternative_acceptor.193"; gene_name "CUFF.1257"; flanks "73973035-,73975965^"; structure "1-,2-"; splice_chain "73975867-,73973035-";
chr10	juncbase	alternative_acceptor	73975612	73975965	.	-	.	gene_id "alternative_acceptor.194"; transcript_id "alternative_acceptor.194"; gene_name "CUFF.1257"; flanks "73975612-,73975965^"; structure "1-,2-"; splice_chain "73975867-,73975612-";
chr10	juncbase	alternative_acceptor	73973109	73975965	.	-	.	gene_id "alternative_acceptor.195"; transcript_id "alternative_acceptor.195"; gene_name "CUFF.1257"; flanks "73973109-,73975965^"; structure "1-,2-"; splice_chain "73975867-,73973109-";
chr10	juncbase	alternative_acceptor	73975867	73975965	.	-	.	gene_id "alternative_acceptor.196"; transcript_id "alternative_acceptor.196"; gene_name "CUFF.1257"; flanks "73975867-,73975965^"; structure "1-,2-"; splice_chain "73975867-,73973035-";
chr10	juncbase	alternative_acceptor	73973089	73975965	.	-	.	gene_id "alternative_acceptor.197"; transcript_id "alternative_acceptor.197"; gene_name "CUFF.1257"; flanks "73973089-,73975965^"; structure "1-,2-"; splice_chain "73973089-,73973035-";
chr10	juncbase	alternative_acceptor	73975612	73975965	.	-	.	gene_id "alternative_acceptor.198"; transcript_id "alternative_acceptor.198"; gene_name "CUFF.1257"; flanks "73975612-,73975965^"; structure "1-,2-"; splice_chain "73975612-,73973035-";
chr10	juncbase	alternative_acceptor	73973109	73975965	.	-	.	gene_id "alternative_acceptor.199"; transcript_id "alternative_acceptor.199"; gene_name "CUFF.1257"; flanks "73973109-,73975965^"; structure "1-,2-"; splice_chain "73973109-,73973035-";
chr10	juncbase	intron_retention	60047517	60048036	.	+	.	gene_id "intron_retention.262"; transcript_id "intron_retention.262"; gene_name ""; flanks "60047517-,60048036^"; structure "0,1^2-"; splice_chain ",60047517^60048036-";
chr10	juncbase	cassette	76287524	76269267	.	-	.	gene_id "cassette.174"; transcript_id "cassette.174"; gene_name "CUFF.1261"; flanks "76287524-,76269267^"; structure "0,1-2^"; splice_chain ",76276659-76276481^";
chr10	juncbase	jcn_only_AA	70661227	70666040	.	+	.	gene_id "jcn_only_AA.277"; transcript_id "jcn_only_AA.277"; gene_name "CUFF.1251"; flanks "70661227-,70666040^"; structure "1-,2-"; splice_chain "70665982-,70666040-";
chr10	juncbase	alternative_acceptor	18280232	18282113	.	+	.	gene_id "alternative_acceptor.200"; transcript_id "alternative_acceptor.200"; gene_name "CUFF.1221"; flanks "18280232-,18282113^"; structure "1-,2-"; splice_chain "18282110-,18282113-";
chr10	juncbase	alternative_acceptor	78637648	78644747	.	-	.	gene_id "alternative_acceptor.201"; transcript_id "alternative_acceptor.201"; gene_name "CUFF.1265"; flanks "78637648-,78644747^"; structure "1-,2-"; splice_chain "78637651-,78637648-";
chr10	juncbase	jcn_only_AD	46168127	46159290	.	-	.	gene_id "jcn_only_AD.239"; transcript_id "jcn_only_AD.239"; gene_name "CUFF.1242"; flanks "46168127-,46159290^"; structure "1^,2^"; splice_chain "46168127^,46167698^";
chr10	juncbase	jcn_only_AD	46167720	46159290	.	-	.	gene_id "jcn_only_AD.240"; transcript_id "jcn_only_AD.240"; gene_name "CUFF.1242"; flanks "46167720-,46159290^"; structure "1^,2^"; splice_chain "46167720^,46167698^";
chr10	juncbase	jcn_only_AD	27149676	27112234	.	-	.	gene_id "jcn_only_AD.241"; transcript_id "jcn_only_AD.241"; gene_name "CUFF.1224"; flanks "27149676-,27112234^"; structure "1^,2^"; splice_chain "27149676^,27128662^";
chr10	juncbase	cassette	35485070	35495823	.	+	.	gene_id "cassette.175"; transcript_id "cassette.175"; gene_name "CUFF.1234"; flanks "35485070-,35495823^"; structure "0,1-2^"; splice_chain ",35490379-35490414^";
chr10	juncbase	cassette	35484142	35495823	.	+	.	gene_id "cassette.176"; transcript_id "cassette.176"; gene_name "CUFF.1234"; flanks "35484142-,35495823^"; structure "0,1-2^"; splice_chain ",35490379-35490414^";
chr10	juncbase	cassette	35485027	35495823	.	+	.	gene_id "cassette.177"; transcript_id "cassette.177"; gene_name "CUFF.1234"; flanks "35485027-,35495823^"; structure "0,1-2^"; splice_chain ",35490379-35490414^";
chr10	juncbase	cassette	35477316	35495823	.	+	.	gene_id "cassette.178"; transcript_id "cassette.178"; gene_name "CUFF.1234"; flanks "35477316-,35495823^"; structure "0,1-2^"; splice_chain ",35490379-35490414^";
chr10	juncbase	cassette	35468204	35495823	.	+	.	gene_id "cassette.179"; transcript_id "cassette.179"; gene_name "CUFF.1234"; flanks "35468204-,35495823^"; structure "0,1-2^"; splice_chain ",35490379-35490414^";
chr10	juncbase	cassette	6266176	6274858	.	+	.	gene_id "cassette.180"; transcript_id "cassette.180"; gene_name "CUFF.1208"; flanks "6266176-,6274858^"; structure "0,1-2^"; splice_chain ",6268155-6268328^";
chr10	juncbase	jcn_only_AA	43572779	43607547	.	+	.	gene_id "jcn_only_AA.278"; transcript_id "jcn_only_AA.278"; gene_name "CUFF.1238"; flanks "43572779-,43607547^"; structure "1-,2-"; splice_chain "43595907-,43607547-";
chr10	juncbase	cassette	123683781	123673408	.	-	.	gene_id "cassette.181"; transcript_id "cassette.181"; gene_name "CUFF.1308"; flanks "123683781-,123673408^"; structure "0,1-2^"; splice_chain ",123681926-123681864^";
chr10	juncbase	jcn_only_AA	79396327	79397023	.	-	.	gene_id "jcn_only_AA.279"; transcript_id "jcn_only_AA.279"; gene_name "CUFF.1265"; flanks "79396327-,79397023^"; structure "1-,2-"; splice_chain "79396327-,79396273-";
chr10	juncbase	jcn_only_AA	79163781	79397023	.	-	.	gene_id "jcn_only_AA.280"; transcript_id "jcn_only_AA.280"; gene_name "CUFF.1265"; flanks "79163781-,79397023^"; structure "1-,2-"; splice_chain "79396273-,79163781-";
chr10	juncbase	jcn_only_AD	74095592	74094375	.	-	.	gene_id "jcn_only_AD.242"; transcript_id "jcn_only_AD.242"; gene_name "CUFF.1258,CUFF.1261"; flanks "74095592-,74094375^"; structure "1^,2^"; splice_chain "74095592^,74095538^";
chr10	juncbase	alternative_acceptor	6259154	6261532	.	+	.	gene_id "alternative_acceptor.202"; transcript_id "alternative_acceptor.202"; gene_name "CUFF.1208"; flanks "6259154-,6261532^"; structure "1-,2-"; splice_chain "6261482-,6261532-";
chr10	juncbase	cassette	69597692	69583150	.	-	.	gene_id "cassette.182"; transcript_id "cassette.182"; gene_name "CUFF.1248"; flanks "69597692-,69583150^"; structure "0,1-2^"; splice_chain ",69587441-69587300^";
chr10	juncbase	alternative_acceptor	96954434	96961742	.	+	.	gene_id "alternative_acceptor.203"; transcript_id "alternative_acceptor.203"; gene_name "CUFF.1280"; flanks "96954434-,96961742^"; structure "1-,2-"; splice_chain "96961198-,96961742-";
chr10	juncbase	alternative_acceptor	80825576	80827145	.	-	.	gene_id "alternative_acceptor.204"; transcript_id "alternative_acceptor.204"; gene_name "CUFF.1270"; flanks "80825576-,80827145^"; structure "1-,2-"; splice_chain "80826343-,80825576-";
chr10	juncbase	alternative_donor	78649209	78647273	.	-	.	gene_id "alternative_donor.185"; transcript_id "alternative_donor.185"; gene_name "CUFF.1265,CUFF.1312"; flanks "78649209-,78647273^"; structure "1^,2^"; splice_chain "78649209^,78647553^";
chr10	juncbase	alternative_acceptor	78799395	78832855	.	-	.	gene_id "alternative_acceptor.205"; transcript_id "alternative_acceptor.205"; gene_name "CUFF.1265"; flanks "78799395-,78832855^"; structure "1-,2-"; splice_chain "78831403-,78799395-";
chr10	juncbase	alternative_acceptor	78823901	78832855	.	-	.	gene_id "alternative_acceptor.206"; transcript_id "alternative_acceptor.206"; gene_name "CUFF.1265"; flanks "78823901-,78832855^"; structure "1-,2-"; splice_chain "78831403-,78823901-";
chr10	juncbase	jcn_only_AD	80814353	80808689	.	-	.	gene_id "jcn_only_AD.243"; transcript_id "jcn_only_AD.243"; gene_name "CUFF.1308"; flanks "80814353-,80808689^"; structure "1^,2^"; splice_chain "80814353^,80810039^";
chr10	juncbase	jcn_only_AD	35437419	35464781	.	+	.	gene_id "jcn_only_AD.244"; transcript_id "jcn_only_AD.244"; gene_name ""; flanks "35437419-,35464781^"; structure "1^,2^"; splice_chain "35437419^,35464633^";
chr10	juncbase	jcn_only_AA	123503373	123549684	.	-	.	gene_id "jcn_only_AA.281"; transcript_id "jcn_only_AA.281"; gene_name "CUFF.1308"; flanks "123503373-,123549684^"; structure "1-,2-"; splice_chain "123542214-,123503373-";
chr10	juncbase	alternative_acceptor	73963282	73970490	.	-	.	gene_id "alternative_acceptor.207"; transcript_id "alternative_acceptor.207"; gene_name "CUFF.1257"; flanks "73963282-,73970490^"; structure "1-,2-"; splice_chain "73964263-,73963282-";
chr10	juncbase	cassette	5120169	5138602	.	+	.	gene_id "cassette.183"; transcript_id "cassette.183"; gene_name "CUFF.1205"; flanks "5120169-,5138602^"; structure "0,1-2^"; splice_chain ",5122938-5123093^";
chr10	juncbase	alternative_acceptor	17646046	17659082	.	-	.	gene_id "alternative_acceptor.208"; transcript_id "alternative_acceptor.208"; gene_name "CUFF.1220"; flanks "17646046-,17659082^"; structure "1-,2-"; splice_chain "17657963-,17646046-";
chr10	juncbase	jcn_only_AA	70673035	70673147	.	+	.	gene_id "jcn_only_AA.282"; transcript_id "jcn_only_AA.282"; gene_name "CUFF.1251"; flanks "70673035-,70673147^"; structure "1-,2-"; splice_chain "70673106-,70673147-";
chr10	juncbase	alternative_donor	73887840	73857208	.	-	.	gene_id "alternative_donor.186"; transcript_id "alternative_donor.186"; gene_name "CUFF.1257"; flanks "73887840-,73857208^"; structure "1^,2^"; splice_chain "73887840^,73862608^";
chr10	juncbase	alternative_donor	73862092	73857208	.	-	.	gene_id "alternative_donor.187"; transcript_id "alternative_donor.187"; gene_name "CUFF.1257"; flanks "73862092-,73857208^"; structure "1^,2^"; splice_chain "73862608^,73862092^";
chr10	juncbase	alternative_acceptor	98092353	98095651	.	+	.	gene_id "alternative_acceptor.209"; transcript_id "alternative_acceptor.209"; gene_name "CUFF.1282"; flanks "98092353-,98095651^"; structure "1-,2-"; splice_chain "98095648-,98095651-";
chr10	juncbase	cassette	78771725	78729825	.	-	.	gene_id "cassette.184"; transcript_id "cassette.184"; gene_name "CUFF.1265"; flanks "78771725-,78729825^"; structure "0,1-2^"; splice_chain ",78734331-78734245^";
chr10	juncbase	alternative_acceptor	80722643	80808531	.	-	.	gene_id "alternative_acceptor.210"; transcript_id "alternative_acceptor.210"; gene_name "CUFF.1270"; flanks "80722643-,80808531^"; structure "1-,2-"; splice_chain "80804269-,80722643-";
chr10	juncbase	alternative_acceptor	35360267	35379107	.	-	.	gene_id "alternative_acceptor.211"; transcript_id "alternative_acceptor.211"; gene_name "CUFF.1233"; flanks "35360267-,35379107^"; structure "1-,2-"; splice_chain "35378929-,35360267-";
chr10	juncbase	jcn_only_AD	73972945	73970589	.	-	.	gene_id "jcn_only_AD.245"; transcript_id "jcn_only_AD.245"; gene_name "CUFF.1257"; flanks "73972945-,73970589^"; structure "1^,2^"; splice_chain "73972945^,73971946^";
chr10	juncbase	jcn_only_AA	78644775	78647049	.	-	.	gene_id "jcn_only_AA.283"; transcript_id "jcn_only_AA.283"; gene_name "CUFF.1265"; flanks "78644775-,78647049^"; structure "1-,2-"; splice_chain "78644775-,78637651-";
chr10	juncbase	jcn_only_AA	78637648	78647049	.	-	.	gene_id "jcn_only_AA.284"; transcript_id "jcn_only_AA.284"; gene_name "CUFF.1265"; flanks "78637648-,78647049^"; structure "1-,2-"; splice_chain "78637651-,78637648-";
chr10	juncbase	alternative_donor	80827145	80825576	.	-	.	gene_id "alternative_donor.188"; transcript_id "alternative_donor.188"; gene_name "CUFF.1220,CUFF.1270"; flanks "80827145-,80825576^"; structure "1^,2^"; splice_chain "80827145^,80826205^";
chr10	juncbase	intron_retention	124134363	124152697	.	+	.	gene_id "intron_retention.263"; transcript_id "intron_retention.263"; gene_name ""; flanks "124134363-,124152697^"; structure "0,1^2-"; splice_chain ",124134363^124152697-";
chr10	juncbase	alternative_acceptor	124157490	124172436	.	+	.	gene_id "alternative_acceptor.212"; transcript_id "alternative_acceptor.212"; gene_name "CUFF.1238,CUFF.1309"; flanks "124157490-,124172436^"; structure "1-,2-"; splice_chain "124159859-,124172436-";
chr10	juncbase	jcn_only_AA	60029064	60036877	.	+	.	gene_id "jcn_only_AA.285"; transcript_id "jcn_only_AA.285"; gene_name "CUFF.1246"; flanks "60029064-,60036877^"; structure "1-,2-"; splice_chain "60035878-,60036877-";
chr10	juncbase	jcn_only_AA	127541211	127548172	.	-	.	gene_id "jcn_only_AA.286"; transcript_id "jcn_only_AA.286"; gene_name "CUFF.1312"; flanks "127541211-,127548172^"; structure "1-,2-"; splice_chain "127542772-,127541211-";
chr10	juncbase	jcn_only_AD	46143742	46135411	.	-	.	gene_id "jcn_only_AD.246"; transcript_id "jcn_only_AD.246"; gene_name "CUFF.1242"; flanks "46143742-,46135411^"; structure "1^,2^"; splice_chain "46143742^,46135689^";
chr10	juncbase	jcn_only_AD	124134322	124152697	.	+	.	gene_id "jcn_only_AD.247"; transcript_id "jcn_only_AD.247"; gene_name "CUFF.1309"; flanks "124134322-,124152697^"; structure "1^,2^"; splice_chain "124134322^,124151888^";
chr10	juncbase	jcn_only_AD	124134363	124152697	.	+	.	gene_id "jcn_only_AD.248"; transcript_id "jcn_only_AD.248"; gene_name "CUFF.1309"; flanks "124134363-,124152697^"; structure "1^,2^"; splice_chain "124134363^,124151888^";
chr10	juncbase	jcn_only_AA	73857208	73887840	.	-	.	gene_id "jcn_only_AA.287"; transcript_id "jcn_only_AA.287"; gene_name "CUFF.1257"; flanks "73857208-,73887840^"; structure "1-,2-"; splice_chain "73862170-,73857208-";
chr10	juncbase	jcn_only_AA	73862725	73887840	.	-	.	gene_id "jcn_only_AA.288"; transcript_id "jcn_only_AA.288"; gene_name "CUFF.1257"; flanks "73862725-,73887840^"; structure "1-,2-"; splice_chain "73862725-,73862170-";
chr10	juncbase	alternative_acceptor	78644775	78647049	.	-	.	gene_id "alternative_acceptor.213"; transcript_id "alternative_acceptor.213"; gene_name "CUFF.1265"; flanks "78644775-,78647049^"; structure "1-,2-"; splice_chain "78644775-,78637648-";
chr10	juncbase	alternative_acceptor	78637651	78647049	.	-	.	gene_id "alternative_acceptor.214"; transcript_id "alternative_acceptor.214"; gene_name "CUFF.1265"; flanks "78637651-,78647049^"; structure "1-,2-"; splice_chain "78637651-,78637648-";
chr10	juncbase	cassette	35416121	35437296	.	+	.	gene_id "cassette.185"; transcript_id "cassette.185"; gene_name "CUFF.1234"; flanks "35416121-,35437296^"; structure "0,1-2^"; splice_chain ",35426710-35426807^";
chr10	juncbase	cassette	35416495	35437296	.	+	.	gene_id "cassette.186"; transcript_id "cassette.186"; gene_name "CUFF.1234"; flanks "35416495-,35437296^"; structure "0,1-2^"; splice_chain ",35426710-35426807^";
chr10	juncbase	cassette	35416121	35467817	.	+	.	gene_id "cassette.187"; transcript_id "cassette.187"; gene_name "CUFF.1234"; flanks "35416121-,35467817^"; structure "0,1-2^"; splice_chain ",35426710-35426807^";
chr10	juncbase	jcn_only_AD	73921296	73912746	.	-	.	gene_id "jcn_only_AD.249"; transcript_id "jcn_only_AD.249"; gene_name "CUFF.1257"; flanks "73921296-,73912746^"; structure "1^,2^"; splice_chain "73921296^,73918704^";
chr10	juncbase	alternative_donor	73862092	73857208	.	-	.	gene_id "alternative_donor.189"; transcript_id "alternative_donor.189"; gene_name ""; flanks "73862092-,73857208^"; structure "1^,2^"; splice_chain "73887840^,73862092^";
chr10	juncbase	alternative_donor	73862608	73857208	.	-	.	gene_id "alternative_donor.190"; transcript_id "alternative_donor.190"; gene_name ""; flanks "73862608-,73857208^"; structure "1^,2^"; splice_chain "73887840^,73862608^";
chr10	juncbase	jcn_only_AA	124157490	124172436	.	+	.	gene_id "jcn_only_AA.289"; transcript_id "jcn_only_AA.289"; gene_name "CUFF.1238,CUFF.1309"; flanks "124157490-,124172436^"; structure "1-,2-"; splice_chain "124159859-,124172436-";
chr10	juncbase	alternative_acceptor	46143982	46147414	.	-	.	gene_id "alternative_acceptor.215"; transcript_id "alternative_acceptor.215"; gene_name "CUFF.1242"; flanks "46143982-,46147414^"; structure "1-,2-"; splice_chain "46147073-,46143982-";
chr10	juncbase	intron_retention	35437419	35467817	.	+	.	gene_id "intron_retention.264"; transcript_id "intron_retention.264"; gene_name ""; flanks "35437419-,35467817^"; structure "0,1^2-"; splice_chain ",35437419^35467817-";
chr10	juncbase	intron_retention	69921509	69925459	.	+	.	gene_id "intron_retention.265"; transcript_id "intron_retention.265"; gene_name "CUFF.1249"; flanks "69921509-,69925459^"; structure "0,1^2-"; splice_chain ",69921509^69925459-";
chr10	juncbase	intron_retention	73975965	73975867	.	-	.	gene_id "intron_retention.266"; transcript_id "intron_retention.266"; gene_name ""; flanks "73975965-,73975867^"; structure "0,1^2-"; splice_chain ",73975965^73975867-";
chr10	juncbase	cassette	18240954	18250510	.	+	.	gene_id "cassette.188"; transcript_id "cassette.188"; gene_name "CUFF.1221"; flanks "18240954-,18250510^"; structure "0,1-2^"; splice_chain ",18242120-18242466^";
chr10	juncbase	jcn_only_AD	73862092	73857208	.	-	.	gene_id "jcn_only_AD.250"; transcript_id "jcn_only_AD.250"; gene_name ""; flanks "73862092-,73857208^"; structure "1^,2^"; splice_chain "73887840^,73862092^";
chr10	juncbase	jcn_only_AD	73862608	73857208	.	-	.	gene_id "jcn_only_AD.251"; transcript_id "jcn_only_AD.251"; gene_name ""; flanks "73862608-,73857208^"; structure "1^,2^"; splice_chain "73887840^,73862608^";
chr10	juncbase	jcn_only_AA	78771801	78778771	.	-	.	gene_id "jcn_only_AA.290"; transcript_id "jcn_only_AA.290"; gene_name "CUFF.1265"; flanks "78771801-,78778771^"; structure "1-,2-"; splice_chain "78772315-,78771801-";
chr10	juncbase	jcn_only_AA	79396273	79397023	.	-	.	gene_id "jcn_only_AA.291"; transcript_id "jcn_only_AA.291"; gene_name "CUFF.1265"; flanks "79396273-,79397023^"; structure "1-,2-"; splice_chain "79396327-,79396273-";
chr10	juncbase	jcn_only_AA	79163781	79397023	.	-	.	gene_id "jcn_only_AA.292"; transcript_id "jcn_only_AA.292"; gene_name "CUFF.1265"; flanks "79163781-,79397023^"; structure "1-,2-"; splice_chain "79396327-,79163781-";
chr10	juncbase	jcn_only_AA	78799395	78832855	.	-	.	gene_id "jcn_only_AA.293"; transcript_id "jcn_only_AA.293"; gene_name "CUFF.1265"; flanks "78799395-,78832855^"; structure "1-,2-"; splice_chain "78831403-,78799395-";
chr10	juncbase	jcn_only_AA	78823901	78832855	.	-	.	gene_id "jcn_only_AA.294"; transcript_id "jcn_only_AA.294"; gene_name "CUFF.1265"; flanks "78823901-,78832855^"; structure "1-,2-"; splice_chain "78831403-,78823901-";
chr10	juncbase	jcn_only_AD	73887840	73862170	.	-	.	gene_id "jcn_only_AD.252"; transcript_id "jcn_only_AD.252"; gene_name ""; flanks "73887840-,73862170^"; structure "1^,2^"; splice_chain "73887840^,73862608^";
chr10	juncbase	alternative_donor	73887840	73862170	.	-	.	gene_id "alternative_donor.191"; transcript_id "alternative_donor.191"; gene_name ""; flanks "73887840-,73862170^"; structure "1^,2^"; splice_chain "73887840^,73862608^";
chr10	juncbase	intron_retention	73975965	73973035	.	-	.	gene_id "intron_retention.267"; transcript_id "intron_retention.267"; gene_name "CUFF.1257"; flanks "73975965-,73973035^"; structure "0,1^2-"; splice_chain ",73975965^73973035-";
chr10	juncbase	jcn_only_AD	124151888	124152697	.	+	.	gene_id "jcn_only_AD.253"; transcript_id "jcn_only_AD.253"; gene_name "CUFF.1309"; flanks "124151888-,124152697^"; structure "1^,2^"; splice_chain "124134363^,124151888^";
chr10	juncbase	jcn_only_AD	124134322	124152697	.	+	.	gene_id "jcn_only_AD.254"; transcript_id "jcn_only_AD.254"; gene_name "CUFF.1309"; flanks "124134322-,124152697^"; structure "1^,2^"; splice_chain "124134322^,124134363^";
chr10	juncbase	jcn_only_AD	69866558	69902697	.	+	.	gene_id "jcn_only_AD.255"; transcript_id "jcn_only_AD.255"; gene_name "CUFF.1249"; flanks "69866558-,69902697^"; structure "1^,2^"; splice_chain "69866558^,69882097^";
chr10	juncbase	cassette	75480296	75479057	.	-	.	gene_id "cassette.189"; transcript_id "cassette.189"; gene_name "CUFF.1259"; flanks "75480296-,75479057^"; structure "0,1-2^"; splice_chain ",75479952-75479765^";
chr10	juncbase	jcn_only_AA	73857208	73887840	.	-	.	gene_id "jcn_only_AA.295"; transcript_id "jcn_only_AA.295"; gene_name "CUFF.1257"; flanks "73857208-,73887840^"; structure "1-,2-"; splice_chain "73862725-,73857208-";
chr10	juncbase	jcn_only_AA	73862170	73887840	.	-	.	gene_id "jcn_only_AA.296"; transcript_id "jcn_only_AA.296"; gene_name "CUFF.1257"; flanks "73862170-,73887840^"; structure "1-,2-"; splice_chain "73862725-,73862170-";
chr10	juncbase	intron_retention	73975965	73973089	.	-	.	gene_id "intron_retention.268"; transcript_id "intron_retention.268"; gene_name ""; flanks "73975965-,73973089^"; structure "0,1^2-"; splice_chain ",73975965^73973089-";
chr10	juncbase	jcn_only_AA	78737396	78771725	.	-	.	gene_id "jcn_only_AA.297"; transcript_id "jcn_only_AA.297"; gene_name ""; flanks "78737396-,78771725^"; structure "1-,2-"; splice_chain "78755466-,78737396-";
chr10	juncbase	jcn_only_AA	27048167	27054147	.	-	.	gene_id "jcn_only_AA.298"; transcript_id "jcn_only_AA.298"; gene_name ""; flanks "27048167-,27054147^"; structure "1-,2-"; splice_chain "27052889-,27048167-";
chr10	juncbase	alternative_acceptor	73956747	73963185	.	-	.	gene_id "alternative_acceptor.216"; transcript_id "alternative_acceptor.216"; gene_name "CUFF.1257"; flanks "73956747-,73963185^"; structure "1-,2-"; splice_chain "73958423-,73956747-";
chr10	juncbase	jcn_only_AD	124147499	124151819	.	+	.	gene_id "jcn_only_AD.256"; transcript_id "jcn_only_AD.256"; gene_name ""; flanks "124147499-,124151819^"; structure "1^,2^"; splice_chain "124145703^,124147499^";
chr10	juncbase	jcn_only_AD	124134477	124151819	.	+	.	gene_id "jcn_only_AD.257"; transcript_id "jcn_only_AD.257"; gene_name ""; flanks "124134477-,124151819^"; structure "1^,2^"; splice_chain "124134477^,124145703^";
chr10	juncbase	cassette	70661227	70666467	.	+	.	gene_id "cassette.190"; transcript_id "cassette.190"; gene_name "CUFF.1251"; flanks "70661227-,70666467^"; structure "0,1-2^"; splice_chain ",70666040-70666093^";
chr10	juncbase	cassette	27065994	27059274	.	-	.	gene_id "cassette.191"; transcript_id "cassette.191"; gene_name "CUFF.1224"; flanks "27065994-,27059274^"; structure "0,1-2^"; splice_chain ",27059469-27059452^";
chr10	juncbase	cassette	123681864	123670666	.	-	.	gene_id "cassette.192"; transcript_id "cassette.192"; gene_name "CUFF.1308"; flanks "123681864-,123670666^"; structure "0,1-2^"; splice_chain ",123673408-123673305^";
chr10	juncbase	cassette	119798483	119774621	.	-	.	gene_id "cassette.193"; transcript_id "cassette.193"; gene_name "CUFF.1306"; flanks "119798483-,119774621^"; structure "0,1-2^"; splice_chain ",119793552-119793493^";
chr10	juncbase	cassette	78771725	78729825	.	-	.	gene_id "cassette.194"; transcript_id "cassette.194"; gene_name "CUFF.1265"; flanks "78771725-,78729825^"; structure "0,1-2^"; splice_chain ",78761338-78761165^";
chr10	juncbase	alternative_donor	78674694	78669854	.	-	.	gene_id "alternative_donor.192"; transcript_id "alternative_donor.192"; gene_name "CUFF.1220,CUFF.1265"; flanks "78674694-,78669854^"; structure "1^,2^"; splice_chain "78674694^,78673815^";
chr17	juncbase	alternative_acceptor	15586265	15586350	.	-	.	gene_id "alternative_acceptor.217"; transcript_id "alternative_acceptor.217"; gene_name "CUFF.1898"; flanks "15586265-,15586350^"; structure "1-,2-"; splice_chain "15586265-,15584536-";
chr17	juncbase	alternative_acceptor	15584267	15586350	.	-	.	gene_id "alternative_acceptor.218"; transcript_id "alternative_acceptor.218"; gene_name "CUFF.1898"; flanks "15584267-,15586350^"; structure "1-,2-"; splice_chain "15584536-,15584267-";
chr17	juncbase	alternative_acceptor	15586278	15586350	.	-	.	gene_id "alternative_acceptor.219"; transcript_id "alternative_acceptor.219"; gene_name "CUFF.1898"; flanks "15586278-,15586350^"; structure "1-,2-"; splice_chain "15586278-,15584536-";
chr17	juncbase	alternative_donor	1617150	1616349	.	-	.	gene_id "alternative_donor.193"; transcript_id "alternative_donor.193"; gene_name "CUFF.1878"; flanks "1617150-,1616349^"; structure "1^,2^"; splice_chain "1617150^,1616997^";
chr17	juncbase	jcn_only_AD	47307939	47304120	.	-	.	gene_id "jcn_only_AD.258"; transcript_id "jcn_only_AD.258"; gene_name "CUFF.1932"; flanks "47307939-,47304120^"; structure "1^,2^"; splice_chain "47307939^,47307830^";
chr17	juncbase	jcn_only_AD	66511707	66518897	.	+	.	gene_id "jcn_only_AD.259"; transcript_id "jcn_only_AD.259"; gene_name "CUFF.1954"; flanks "66511707-,66518897^"; structure "1^,2^"; splice_chain "66511707^,66511717^";
chr17	juncbase	jcn_only_AA	79250933	79254409	.	-	.	gene_id "jcn_only_AA.299"; transcript_id "jcn_only_AA.299"; gene_name "CUFF.1964"; flanks "79250933-,79254409^"; structure "1-,2-"; splice_chain "79253960-,79250933-";
chr17	juncbase	jcn_only_AD	6349507	6350783	.	+	.	gene_id "jcn_only_AD.260"; transcript_id "jcn_only_AD.260"; gene_name "CUFF.1890"; flanks "6349507-,6350783^"; structure "1^,2^"; splice_chain "6348724^,6349507^";
chr17	juncbase	jcn_only_AD	6348662	6350783	.	+	.	gene_id "jcn_only_AD.261"; transcript_id "jcn_only_AD.261"; gene_name "CUFF.1890"; flanks "6348662-,6350783^"; structure "1^,2^"; splice_chain "6348662^,6348724^";
chr17	juncbase	jcn_only_AD	79895138	79894737	.	-	.	gene_id "jcn_only_AD.262"; transcript_id "jcn_only_AD.262"; gene_name "CUFF.1972"; flanks "79895138-,79894737^"; structure "1^,2^"; splice_chain "79895404^,79895138^";
chr17	juncbase	jcn_only_AD	79895134	79894737	.	-	.	gene_id "jcn_only_AD.263"; transcript_id "jcn_only_AD.263"; gene_name "CUFF.1972"; flanks "79895134-,79894737^"; structure "1^,2^"; splice_chain "79895404^,79895134^";
chr17	juncbase	jcn_only_AD	79895056	79894737	.	-	.	gene_id "jcn_only_AD.264"; transcript_id "jcn_only_AD.264"; gene_name "CUFF.1972"; flanks "79895056-,79894737^"; structure "1^,2^"; splice_chain "79895404^,79895056^";
chr17	juncbase	jcn_only_AD	79895069	79894737	.	-	.	gene_id "jcn_only_AD.265"; transcript_id "jcn_only_AD.265"; gene_name "CUFF.1972"; flanks "79895069-,79894737^"; structure "1^,2^"; splice_chain "79895404^,79895069^";
chr17	juncbase	jcn_only_AD	79894846	79894737	.	-	.	gene_id "jcn_only_AD.266"; transcript_id "jcn_only_AD.266"; gene_name "CUFF.1972"; flanks "79894846-,79894737^"; structure "1^,2^"; splice_chain "79895404^,79894846^";
chr17	juncbase	jcn_only_AD	79895104	79894737	.	-	.	gene_id "jcn_only_AD.267"; transcript_id "jcn_only_AD.267"; gene_name "CUFF.1972"; flanks "79895104-,79894737^"; structure "1^,2^"; splice_chain "79895404^,79895104^";
chr17	juncbase	jcn_only_AD	6352727	6353348	.	+	.	gene_id "jcn_only_AD.268"; transcript_id "jcn_only_AD.268"; gene_name "CUFF.1890"; flanks "6352727-,6353348^"; structure "1^,2^"; splice_chain "6352727^,6353098^";
chr17	juncbase	intron_retention	66511293	66511535	.	+	.	gene_id "intron_retention.269"; transcript_id "intron_retention.269"; gene_name ""; flanks "66511293-,66511535^"; structure "0,1^2-"; splice_chain ",66511293^66511535-";
chr17	juncbase	intron_retention	66511260	66511535	.	+	.	gene_id "intron_retention.270"; transcript_id "intron_retention.270"; gene_name "CUFF.1954"; flanks "66511260-,66511535^"; structure "0,1^2-"; splice_chain ",66511260^66511535-";
chr17	juncbase	jcn_only_AA	61574346	61584417	.	+	.	gene_id "jcn_only_AA.300"; transcript_id "jcn_only_AA.300"; gene_name ""; flanks "61574346-,61584417^"; structure "1-,2-"; splice_chain "61574498-,61584417-";
chr17	juncbase	jcn_only_AA	5487279	5487613	.	-	.	gene_id "jcn_only_AA.301"; transcript_id "jcn_only_AA.301"; gene_name "CUFF.1889"; flanks "5487279-,5487613^"; structure "1-,2-"; splice_chain "5487423-,5487279-";
chr17	juncbase	jcn_only_AA	80436794	80437814	.	+	.	gene_id "jcn_only_AA.302"; transcript_id "jcn_only_AA.302"; gene_name "CUFF.1977"; flanks "80436794-,80437814^"; structure "1-,2-"; splice_chain "80437814-,80438283-";
chr17	juncbase	jcn_only_AA	80436794	80438958	.	+	.	gene_id "jcn_only_AA.303"; transcript_id "jcn_only_AA.303"; gene_name "CUFF.1977"; flanks "80436794-,80438958^"; structure "1-,2-"; splice_chain "80438283-,80438958-";
chr17	juncbase	intron_retention	79225293	79220858	.	-	.	gene_id "intron_retention.271"; transcript_id "intron_retention.271"; gene_name ""; flanks "79225293-,79220858^"; structure "0,1^2-"; splice_chain ",79225293^79220858-";
chr17	juncbase	intron_retention	1617150	1615693	.	-	.	gene_id "intron_retention.272"; transcript_id "intron_retention.272"; gene_name ""; flanks "1617150-,1615693^"; structure "0,1^2-"; splice_chain ",1617150^1615693-";
chr17	juncbase	jcn_only_AA	5425106	5433801	.	-	.	gene_id "jcn_only_AA.304"; transcript_id "jcn_only_AA.304"; gene_name "CUFF.1889"; flanks "5425106-,5433801^"; structure "1-,2-"; splice_chain "5433378-,5425106-";
chr17	juncbase	alternative_donor	61905569	61907212	.	+	.	gene_id "alternative_donor.194"; transcript_id "alternative_donor.194"; gene_name "CUFF.1944"; flanks "61905569-,61907212^"; structure "1^,2^"; splice_chain "61905569^,61906923^";
chr17	juncbase	intron_retention	25969374	25972887	.	+	.	gene_id "intron_retention.273"; transcript_id "intron_retention.273"; gene_name ""; flanks "25969374-,25972887^"; structure "0,1^2-"; splice_chain ",25969374^25972887-";
chr17	juncbase	jcn_only_AA	61904874	61905211	.	+	.	gene_id "jcn_only_AA.305"; transcript_id "jcn_only_AA.305"; gene_name "CUFF.1944"; flanks "61904874-,61905211^"; structure "1-,2-"; splice_chain "61905034-,61905211-";
chr17	juncbase	jcn_only_AA	61904874	61905189	.	+	.	gene_id "jcn_only_AA.306"; transcript_id "jcn_only_AA.306"; gene_name "CUFF.1944"; flanks "61904874-,61905189^"; structure "1-,2-"; splice_chain "61905034-,61905189-";
chr17	juncbase	jcn_only_AA	61904874	61905479	.	+	.	gene_id "jcn_only_AA.307"; transcript_id "jcn_only_AA.307"; gene_name "CUFF.1944"; flanks "61904874-,61905479^"; structure "1-,2-"; splice_chain "61905034-,61905479-";
chr17	juncbase	jcn_only_AA	61904874	61905498	.	+	.	gene_id "jcn_only_AA.308"; transcript_id "jcn_only_AA.308"; gene_name "CUFF.1944"; flanks "61904874-,61905498^"; structure "1-,2-"; splice_chain "61905034-,61905498-";
chr17	juncbase	intron_retention	15532188	15531375	.	-	.	gene_id "intron_retention.274"; transcript_id "intron_retention.274"; gene_name ""; flanks "15532188-,15531375^"; structure "0,1^2-"; splice_chain ",15532188^15531375-";
chr17	juncbase	jcn_only_AA	6348724	6350783	.	+	.	gene_id "jcn_only_AA.309"; transcript_id "jcn_only_AA.309"; gene_name "CUFF.1890"; flanks "6348724-,6350783^"; structure "1-,2-"; splice_chain "6349415-,6350783-";
chr17	juncbase	alternative_acceptor	61905569	61907212	.	+	.	gene_id "alternative_acceptor.220"; transcript_id "alternative_acceptor.220"; gene_name ""; flanks "61905569-,61907212^"; structure "1-,2-"; splice_chain "61906854-,61907212-";
chr17	juncbase	jcn_only_AD	79481573	79479386	.	-	.	gene_id "jcn_only_AD.269"; transcript_id "jcn_only_AD.269"; gene_name "CUFF.1968"; flanks "79481573-,79479386^"; structure "1^,2^"; splice_chain "79481573^,79479490^";
chr17	juncbase	jcn_only_AD	79490668	79479386	.	-	.	gene_id "jcn_only_AD.270"; transcript_id "jcn_only_AD.270"; gene_name "CUFF.1968"; flanks "79490668-,79479386^"; structure "1^,2^"; splice_chain "79490668^,79479490^";
chr17	juncbase	jcn_only_AD	79479760	79479386	.	-	.	gene_id "jcn_only_AD.271"; transcript_id "jcn_only_AD.271"; gene_name "CUFF.1968"; flanks "79479760-,79479386^"; structure "1^,2^"; splice_chain "79479760^,79479490^";
chr17	juncbase	jcn_only_AD	79479641	79479386	.	-	.	gene_id "jcn_only_AD.272"; transcript_id "jcn_only_AD.272"; gene_name "CUFF.1968"; flanks "79479641-,79479386^"; structure "1^,2^"; splice_chain "79479641^,79479490^";
chr17	juncbase	jcn_only_AD	79479632	79479386	.	-	.	gene_id "jcn_only_AD.273"; transcript_id "jcn_only_AD.273"; gene_name "CUFF.1968"; flanks "79479632-,79479386^"; structure "1^,2^"; splice_chain "79479632^,79479490^";
chr17	juncbase	intron_retention	79895069	79894737	.	-	.	gene_id "intron_retention.275"; transcript_id "intron_retention.275"; gene_name ""; flanks "79895069-,79894737^"; structure "0,1^2-"; splice_chain ",79895069^79894737-";
chr17	juncbase	intron_retention	61904874	61905034	.	+	.	gene_id "intron_retention.276"; transcript_id "intron_retention.276"; gene_name "CUFF.1944"; flanks "61904874-,61905034^"; structure "0,1^2-"; splice_chain ",61904874^61905034-";
chr17	juncbase	intron_retention	66508636	66511535	.	+	.	gene_id "intron_retention.277"; transcript_id "intron_retention.277"; gene_name ""; flanks "66508636-,66511535^"; structure "0,1^2-"; splice_chain ",66508636^66511535-";
chr17	juncbase	cassette	655373	651272	.	-	.	gene_id "cassette.195"; transcript_id "cassette.195"; gene_name "CUFF.1875"; flanks "655373-,651272^"; structure "0,1-2^"; splice_chain ",653149-653054^";
chr17	juncbase	cassette	40739852	40738155	.	-	.	gene_id "cassette.196"; transcript_id "cassette.196"; gene_name "CUFF.1924"; flanks "40739852-,40738155^"; structure "0,1-2^"; splice_chain ",40738909-40738783^";
chr17	juncbase	jcn_only_AD	15584365	15584267	.	-	.	gene_id "jcn_only_AD.274"; transcript_id "jcn_only_AD.274"; gene_name ""; flanks "15584365-,15584267^"; structure "1^,2^"; splice_chain "15586350^,15584365^";
chr17	juncbase	jcn_only_AD	15586175	15584267	.	-	.	gene_id "jcn_only_AD.275"; transcript_id "jcn_only_AD.275"; gene_name ""; flanks "15586175-,15584267^"; structure "1^,2^"; splice_chain "15586350^,15586175^";
chr17	juncbase	jcn_only_AD	15586168	15584267	.	-	.	gene_id "jcn_only_AD.276"; transcript_id "jcn_only_AD.276"; gene_name ""; flanks "15586168-,15584267^"; structure "1^,2^"; splice_chain "15586350^,15586168^";
chr17	juncbase	jcn_only_AD	29706375	29708891	.	+	.	gene_id "jcn_only_AD.277"; transcript_id "jcn_only_AD.277"; gene_name ""; flanks "29706375-,29708891^"; structure "1^,2^"; splice_chain "29706041^,29706375^";
chr17	juncbase	jcn_only_AD	29707245	29708891	.	+	.	gene_id "jcn_only_AD.278"; transcript_id "jcn_only_AD.278"; gene_name ""; flanks "29707245-,29708891^"; structure "1^,2^"; splice_chain "29706041^,29707245^";
chr17	juncbase	jcn_only_AA	66524041	66525011	.	+	.	gene_id "jcn_only_AA.310"; transcript_id "jcn_only_AA.310"; gene_name "CUFF.1954"; flanks "66524041-,66525011^"; structure "1-,2-"; splice_chain "66524772-,66525011-";
chr17	juncbase	alternative_acceptor	79479141	79479258	.	-	.	gene_id "alternative_acceptor.221"; transcript_id "alternative_acceptor.221"; gene_name "CUFF.1968"; flanks "79479141-,79479258^"; structure "1-,2-"; splice_chain "79479168-,79479141-";
chr17	juncbase	alternative_acceptor	15498140	15499828	.	-	.	gene_id "alternative_acceptor.222"; transcript_id "alternative_acceptor.222"; gene_name "CUFF.1899"; flanks "15498140-,15499828^"; structure "1-,2-"; splice_chain "15498204-,15498140-";
chr17	juncbase	alternative_donor	79895138	79894737	.	-	.	gene_id "alternative_donor.195"; transcript_id "alternative_donor.195"; gene_name "CUFF.1972"; flanks "79895138-,79894737^"; structure "1^,2^"; splice_chain "79895138^,79895134^";
chr17	juncbase	alternative_donor	79895404	79894737	.	-	.	gene_id "alternative_donor.196"; transcript_id "alternative_donor.196"; gene_name "CUFF.1972"; flanks "79895404-,79894737^"; structure "1^,2^"; splice_chain "79895404^,79895134^";
chr17	juncbase	alternative_donor	79895056	79894737	.	-	.	gene_id "alternative_donor.197"; transcript_id "alternative_donor.197"; gene_name "CUFF.1972"; flanks "79895056-,79894737^"; structure "1^,2^"; splice_chain "79895134^,79895056^";
chr17	juncbase	alternative_donor	79895069	79894737	.	-	.	gene_id "alternative_donor.198"; transcript_id "alternative_donor.198"; gene_name "CUFF.1972"; flanks "79895069-,79894737^"; structure "1^,2^"; splice_chain "79895134^,79895069^";
chr17	juncbase	alternative_donor	79894846	79894737	.	-	.	gene_id "alternative_donor.199"; transcript_id "alternative_donor.199"; gene_name "CUFF.1972"; flanks "79894846-,79894737^"; structure "1^,2^"; splice_chain "79895134^,79894846^";
chr17	juncbase	alternative_donor	79895104	79894737	.	-	.	gene_id "alternative_donor.200"; transcript_id "alternative_donor.200"; gene_name "CUFF.1972"; flanks "79895104-,79894737^"; structure "1^,2^"; splice_chain "79895134^,79895104^";
chr17	juncbase	jcn_only_AD	5436624	5436304	.	-	.	gene_id "jcn_only_AD.279"; transcript_id "jcn_only_AD.279"; gene_name "CUFF.1889"; flanks "5436624-,5436304^"; structure "1^,2^"; splice_chain "5436624^,5436612^";
chr17	juncbase	jcn_only_AA	25965380	25967669	.	+	.	gene_id "jcn_only_AA.311"; transcript_id "jcn_only_AA.311"; gene_name "CUFF.1908"; flanks "25965380-,25967669^"; structure "1-,2-"; splice_chain "25967598-,25967669-";
chr17	juncbase	cassette	77001454	76994045	.	-	.	gene_id "cassette.197"; transcript_id "cassette.197"; gene_name "CUFF.1960"; flanks "77001454-,76994045^"; structure "0,1-2^"; splice_chain ",76996352-76996182^";
chr17	juncbase	cassette	77005746	76994368	.	-	.	gene_id "cassette.198"; transcript_id "cassette.198"; gene_name "CUFF.1960"; flanks "77005746-,76994368^"; structure "0,1-2^"; splice_chain ",76996352-76996182^";
chr17	juncbase	cassette	77005746	76994045	.	-	.	gene_id "cassette.199"; transcript_id "cassette.199"; gene_name "CUFF.1960"; flanks "77005746-,76994045^"; structure "0,1-2^"; splice_chain ",76996352-76996182^";
chr17	juncbase	alternative_acceptor	15584536	15586350	.	-	.	gene_id "alternative_acceptor.223"; transcript_id "alternative_acceptor.223"; gene_name "CUFF.1898"; flanks "15584536-,15586350^"; structure "1-,2-"; splice_chain "15586265-,15584536-";
chr17	juncbase	alternative_acceptor	15584267	15586350	.	-	.	gene_id "alternative_acceptor.224"; transcript_id "alternative_acceptor.224"; gene_name "CUFF.1898"; flanks "15584267-,15586350^"; structure "1-,2-"; splice_chain "15586265-,15584267-";
chr17	juncbase	alternative_acceptor	15586278	15586350	.	-	.	gene_id "alternative_acceptor.225"; transcript_id "alternative_acceptor.225"; gene_name "CUFF.1898"; flanks "15586278-,15586350^"; structure "1-,2-"; splice_chain "15586278-,15586265-";
chr17	juncbase	cassette	5424844	5421207	.	-	.	gene_id "cassette.200"; transcript_id "cassette.200"; gene_name "CUFF.1889"; flanks "5424844-,5421207^"; structure "0,1-2^"; splice_chain ",5424332-5424201^";
chr17	juncbase	jcn_only_AD	66524041	66525011	.	+	.	gene_id "jcn_only_AD.280"; transcript_id "jcn_only_AD.280"; gene_name "CUFF.1954"; flanks "66524041-,66525011^"; structure "1^,2^"; splice_chain "66524041^,66524860^";
chr17	juncbase	intron_retention	61908295	61908380	.	+	.	gene_id "intron_retention.278"; transcript_id "intron_retention.278"; gene_name "CUFF.1944"; flanks "61908295-,61908380^"; structure "0,1^2-"; splice_chain ",61908295^61908380-";
chr17	juncbase	alternative_donor	29626624	29652838	.	+	.	gene_id "alternative_donor.201"; transcript_id "alternative_donor.201"; gene_name "CUFF.1912"; flanks "29626624-,29652838^"; structure "1^,2^"; splice_chain "29626624^,29645582^";
chr17	juncbase	alternative_donor	29592357	29652838	.	+	.	gene_id "alternative_donor.202"; transcript_id "alternative_donor.202"; gene_name "CUFF.1912"; flanks "29592357-,29652838^"; structure "1^,2^"; splice_chain "29592357^,29645582^";
chr17	juncbase	alternative_donor	66511707	66518897	.	+	.	gene_id "alternative_donor.203"; transcript_id "alternative_donor.203"; gene_name "CUFF.1954"; flanks "66511707-,66518897^"; structure "1^,2^"; splice_chain "66511707^,66511717^";
chr17	juncbase	jcn_only_AA	79258695	79263491	.	-	.	gene_id "jcn_only_AA.312"; transcript_id "jcn_only_AA.312"; gene_name "CUFF.1964"; flanks "79258695-,79263491^"; structure "1-,2-"; splice_chain "79262745-,79258695-";
chr17	juncbase	jcn_only_AA	6352727	6353682	.	+	.	gene_id "jcn_only_AA.313"; transcript_id "jcn_only_AA.313"; gene_name "CUFF.1890"; flanks "6352727-,6353682^"; structure "1-,2-"; splice_chain "6353348-,6353682-";
chr17	juncbase	intron_retention	80442806	80446097	.	+	.	gene_id "intron_retention.279"; transcript_id "intron_retention.279"; gene_name ""; flanks "80442806-,80446097^"; structure "0,1^2-"; splice_chain ",80442806^80446097-";
chr17	juncbase	cassette	79892529	79891252	.	-	.	gene_id "cassette.201"; transcript_id "cassette.201"; gene_name "CUFF.1972"; flanks "79892529-,79891252^"; structure "0,1-2^"; splice_chain ",79892365-79892202^";
chr17	juncbase	cassette	79892802	79891252	.	-	.	gene_id "cassette.202"; transcript_id "cassette.202"; gene_name "CUFF.1972"; flanks "79892802-,79891252^"; structure "0,1-2^"; splice_chain ",79892365-79892202^";
chr17	juncbase	intron_retention	61904874	61905498	.	+	.	gene_id "intron_retention.280"; transcript_id "intron_retention.280"; gene_name "CUFF.1944"; flanks "61904874-,61905498^"; structure "0,1^2-"; splice_chain ",61904874^61905498-";
chr17	juncbase	alternative_donor	15580490	15555260	.	-	.	gene_id "alternative_donor.204"; transcript_id "alternative_donor.204"; gene_name "CUFF.1898"; flanks "15580490-,15555260^"; structure "1^,2^"; splice_chain "15580490^,15562116^";
chr17	juncbase	intron_retention	37822032	37822105	.	+	.	gene_id "intron_retention.281"; transcript_id "intron_retention.281"; gene_name "CUFF.1922"; flanks "37822032-,37822105^"; structure "0,1^2-"; splice_chain ",37822032^37822105-";
chr17	juncbase	alternative_acceptor	79478652	79478929	.	-	.	gene_id "alternative_acceptor.226"; transcript_id "alternative_acceptor.226"; gene_name "CUFF.1968"; flanks "79478652-,79478929^"; structure "1-,2-"; splice_chain "79478829-,79478652-";
chr17	juncbase	alternative_acceptor	79258695	79263491	.	-	.	gene_id "alternative_acceptor.227"; transcript_id "alternative_acceptor.227"; gene_name "CUFF.1964"; flanks "79258695-,79263491^"; structure "1-,2-"; splice_chain "79262745-,79258695-";
chr17	juncbase	alternative_acceptor	66519067	66519866	.	+	.	gene_id "alternative_acceptor.228"; transcript_id "alternative_acceptor.228"; gene_name "CUFF.1954"; flanks "66519067-,66519866^"; structure "1-,2-"; splice_chain "66519855-,66519866-";
chr17	juncbase	jcn_only_AA	15586265	15586350	.	-	.	gene_id "jcn_only_AA.314"; transcript_id "jcn_only_AA.314"; gene_name "CUFF.1898"; flanks "15586265-,15586350^"; structure "1-,2-"; splice_chain "15586265-,15584536-";
chr17	juncbase	jcn_only_AA	15584267	15586350	.	-	.	gene_id "jcn_only_AA.315"; transcript_id "jcn_only_AA.315"; gene_name "CUFF.1898"; flanks "15584267-,15586350^"; structure "1-,2-"; splice_chain "15584536-,15584267-";
chr17	juncbase	jcn_only_AA	15586278	15586350	.	-	.	gene_id "jcn_only_AA.316"; transcript_id "jcn_only_AA.316"; gene_name "CUFF.1898"; flanks "15586278-,15586350^"; structure "1-,2-"; splice_chain "15586278-,15584536-";
chr17	juncbase	jcn_only_AD	56083871	56082402	.	-	.	gene_id "jcn_only_AD.281"; transcript_id "jcn_only_AD.281"; gene_name ""; flanks "56083871-,56082402^"; structure "1^,2^"; splice_chain "56083871^,56082759^";
chr17	juncbase	jcn_only_AD	56082775	56082402	.	-	.	gene_id "jcn_only_AD.282"; transcript_id "jcn_only_AD.282"; gene_name ""; flanks "56082775-,56082402^"; structure "1^,2^"; splice_chain "56082775^,56082759^";
chr17	juncbase	cassette	29576137	29585362	.	+	.	gene_id "cassette.203"; transcript_id "cassette.203"; gene_name "CUFF.1912"; flanks "29576137-,29585362^"; structure "0,1-2^"; splice_chain ",29584705-29584744^";
chr17	juncbase	jcn_only_AD	15584179	15580594	.	-	.	gene_id "jcn_only_AD.283"; transcript_id "jcn_only_AD.283"; gene_name "CUFF.1936"; flanks "15584179-,15580594^"; structure "1^,2^"; splice_chain "15584179^,15580889^";
chr17	juncbase	intron_retention	79894846	79894737	.	-	.	gene_id "intron_retention.282"; transcript_id "intron_retention.282"; gene_name ""; flanks "79894846-,79894737^"; structure "0,1^2-"; splice_chain ",79894846^79894737-";
chr17	juncbase	intron_retention	6353392	6353682	.	+	.	gene_id "intron_retention.283"; transcript_id "intron_retention.283"; gene_name "CUFF.1890"; flanks "6353392-,6353682^"; structure "0,1^2-"; splice_chain ",6353392^6353682-";
chr17	juncbase	jcn_only_AA	66526142	66547225	.	+	.	gene_id "jcn_only_AA.317"; transcript_id "jcn_only_AA.317"; gene_name ""; flanks "66526142-,66547225^"; structure "1-,2-"; splice_chain "66526418-,66547225-";
chr17	juncbase	jcn_only_AD	79895138	79894737	.	-	.	gene_id "jcn_only_AD.284"; transcript_id "jcn_only_AD.284"; gene_name "CUFF.1972"; flanks "79895138-,79894737^"; structure "1^,2^"; splice_chain "79895138^,79895134^";
chr17	juncbase	jcn_only_AD	79895404	79894737	.	-	.	gene_id "jcn_only_AD.285"; transcript_id "jcn_only_AD.285"; gene_name "CUFF.1972"; flanks "79895404-,79894737^"; structure "1^,2^"; splice_chain "79895404^,79895134^";
chr17	juncbase	jcn_only_AD	79895056	79894737	.	-	.	gene_id "jcn_only_AD.286"; transcript_id "jcn_only_AD.286"; gene_name "CUFF.1972"; flanks "79895056-,79894737^"; structure "1^,2^"; splice_chain "79895134^,79895056^";
chr17	juncbase	jcn_only_AD	79895069	79894737	.	-	.	gene_id "jcn_only_AD.287"; transcript_id "jcn_only_AD.287"; gene_name "CUFF.1972"; flanks "79895069-,79894737^"; structure "1^,2^"; splice_chain "79895134^,79895069^";
chr17	juncbase	jcn_only_AD	79894846	79894737	.	-	.	gene_id "jcn_only_AD.288"; transcript_id "jcn_only_AD.288"; gene_name "CUFF.1972"; flanks "79894846-,79894737^"; structure "1^,2^"; splice_chain "79895134^,79894846^";
chr17	juncbase	jcn_only_AD	79895104	79894737	.	-	.	gene_id "jcn_only_AD.289"; transcript_id "jcn_only_AD.289"; gene_name "CUFF.1972"; flanks "79895104-,79894737^"; structure "1^,2^"; splice_chain "79895134^,79895104^";
chr17	juncbase	alternative_donor	15584179	15580594	.	-	.	gene_id "alternative_donor.205"; transcript_id "alternative_donor.205"; gene_name "CUFF.1936"; flanks "15584179-,15580594^"; structure "1^,2^"; splice_chain "15584179^,15580889^";
chr17	juncbase	intron_retention	47307939	47304120	.	-	.	gene_id "intron_retention.284"; transcript_id "intron_retention.284"; gene_name "CUFF.1932"; flanks "47307939-,47304120^"; structure "0,1^2-"; splice_chain ",47307939^47304120-";
chr17	juncbase	alternative_acceptor	21437282	21438689	.	-	.	gene_id "alternative_acceptor.229"; transcript_id "alternative_acceptor.229"; gene_name "CUFF.1907"; flanks "21437282-,21438689^"; structure "1-,2-"; splice_chain "21437832-,21437282-";
chr17	juncbase	intron_retention	1944475	1944775	.	+	.	gene_id "intron_retention.285"; transcript_id "intron_retention.285"; gene_name "CUFF.1881"; flanks "1944475-,1944775^"; structure "0,1^2-"; splice_chain ",1944475^1944775-";
chr17	juncbase	alternative_acceptor	79893020	79893999	.	-	.	gene_id "alternative_acceptor.230"; transcript_id "alternative_acceptor.230"; gene_name "CUFF.1972"; flanks "79893020-,79893999^"; structure "1-,2-"; splice_chain "79893392-,79893020-";
chr17	juncbase	intron_retention	79995507	79994889	.	-	.	gene_id "intron_retention.286"; transcript_id "intron_retention.286"; gene_name ""; flanks "79995507-,79994889^"; structure "0,1^2-"; splice_chain ",79995507^79994889-";
chr17	juncbase	intron_retention	61904874	61905211	.	+	.	gene_id "intron_retention.287"; transcript_id "intron_retention.287"; gene_name "CUFF.1944"; flanks "61904874-,61905211^"; structure "0,1^2-"; splice_chain ",61904874^61905211-";
chr17	juncbase	intron_retention	79994735	79994639	.	-	.	gene_id "intron_retention.288"; transcript_id "intron_retention.288"; gene_name "CUFF.1975"; flanks "79994735-,79994639^"; structure "0,1^2-"; splice_chain ",79994735^79994639-";
chr17	juncbase	jcn_only_AA	1616349	1617150	.	-	.	gene_id "jcn_only_AA.318"; transcript_id "jcn_only_AA.318"; gene_name "CUFF.1878"; flanks "1616349-,1617150^"; structure "1-,2-"; splice_chain "1616349-,1615940-";
chr17	juncbase	jcn_only_AA	1616198	1617150	.	-	.	gene_id "jcn_only_AA.319"; transcript_id "jcn_only_AA.319"; gene_name "CUFF.1878"; flanks "1616198-,1617150^"; structure "1-,2-"; splice_chain "1616198-,1615940-";
chr17	juncbase	jcn_only_AA	1616189	1617150	.	-	.	gene_id "jcn_only_AA.320"; transcript_id "jcn_only_AA.320"; gene_name "CUFF.1878"; flanks "1616189-,1617150^"; structure "1-,2-"; splice_chain "1616189-,1615940-";
chr17	juncbase	jcn_only_AA	1615693	1617150	.	-	.	gene_id "jcn_only_AA.321"; transcript_id "jcn_only_AA.321"; gene_name "CUFF.1878"; flanks "1615693-,1617150^"; structure "1-,2-"; splice_chain "1615940-,1615693-";
chr17	juncbase	intron_retention	76993074	76991303	.	-	.	gene_id "intron_retention.289"; transcript_id "intron_retention.289"; gene_name "CUFF.1960"; flanks "76993074-,76991303^"; structure "0,1^2-"; splice_chain ",76993074^76991303-";
chr17	juncbase	alternative_donor	79895138	79894737	.	-	.	gene_id "alternative_donor.206"; transcript_id "alternative_donor.206"; gene_name "CUFF.1972"; flanks "79895138-,79894737^"; structure "1^,2^"; splice_chain "79895138^,79894846^";
chr17	juncbase	alternative_donor	79895404	79894737	.	-	.	gene_id "alternative_donor.207"; transcript_id "alternative_donor.207"; gene_name "CUFF.1972"; flanks "79895404-,79894737^"; structure "1^,2^"; splice_chain "79895404^,79894846^";
chr17	juncbase	alternative_donor	79895134	79894737	.	-	.	gene_id "alternative_donor.208"; transcript_id "alternative_donor.208"; gene_name "CUFF.1972"; flanks "79895134-,79894737^"; structure "1^,2^"; splice_chain "79895134^,79894846^";
chr17	juncbase	alternative_donor	79895056	79894737	.	-	.	gene_id "alternative_donor.209"; transcript_id "alternative_donor.209"; gene_name "CUFF.1972"; flanks "79895056-,79894737^"; structure "1^,2^"; splice_chain "79895056^,79894846^";
chr17	juncbase	alternative_donor	79895069	79894737	.	-	.	gene_id "alternative_donor.210"; transcript_id "alternative_donor.210"; gene_name "CUFF.1972"; flanks "79895069-,79894737^"; structure "1^,2^"; splice_chain "79895069^,79894846^";
chr17	juncbase	alternative_donor	79895104	79894737	.	-	.	gene_id "alternative_donor.211"; transcript_id "alternative_donor.211"; gene_name "CUFF.1972"; flanks "79895104-,79894737^"; structure "1^,2^"; splice_chain "79895104^,79894846^";
chr17	juncbase	intron_retention	61904874	61905189	.	+	.	gene_id "intron_retention.290"; transcript_id "intron_retention.290"; gene_name "CUFF.1944"; flanks "61904874-,61905189^"; structure "0,1^2-"; splice_chain ",61904874^61905189-";
chr17	juncbase	alternative_donor	40744074	40738909	.	-	.	gene_id "alternative_donor.212"; transcript_id "alternative_donor.212"; gene_name "CUFF.1924"; flanks "40744074-,40738909^"; structure "1^,2^"; splice_chain "40744074^,40739852^";
chr17	juncbase	intron_retention	79917347	79916871	.	-	.	gene_id "intron_retention.291"; transcript_id "intron_retention.291"; gene_name "CUFF.1976"; flanks "79917347-,79916871^"; structure "0,1^2-"; splice_chain ",79917347^79916871-";
chr17	juncbase	intron_retention	61907309	61907631	.	+	.	gene_id "intron_retention.292"; transcript_id "intron_retention.292"; gene_name ""; flanks "61907309-,61907631^"; structure "0,1^2-"; splice_chain ",61907309^61907631-";
chr17	juncbase	intron_retention	15517147	15517056	.	-	.	gene_id "intron_retention.293"; transcript_id "intron_retention.293"; gene_name ""; flanks "15517147-,15517056^"; structure "0,1^2-"; splice_chain ",15517147^15517056-";
chr17	juncbase	alternative_acceptor	15586471	15587510	.	-	.	gene_id "alternative_acceptor.231"; transcript_id "alternative_acceptor.231"; gene_name "CUFF.1898"; flanks "15586471-,15587510^"; structure "1-,2-"; splice_chain "15586685-,15586471-";
chr17	juncbase	alternative_donor	79269222	79263608	.	-	.	gene_id "alternative_donor.213"; transcript_id "alternative_donor.213"; gene_name ""; flanks "79269222-,79263608^"; structure "1^,2^"; splice_chain "79269222^,79268623^";
chr17	juncbase	jcn_only_AA	29706041	29708891	.	+	.	gene_id "jcn_only_AA.322"; transcript_id "jcn_only_AA.322"; gene_name ""; flanks "29706041-,29708891^"; structure "1-,2-"; splice_chain "29706124-,29708891-";
chr17	juncbase	jcn_only_AD	1617150	1616189	.	-	.	gene_id "jcn_only_AD.290"; transcript_id "jcn_only_AD.290"; gene_name ""; flanks "1617150-,1616189^"; structure "1^,2^"; splice_chain "1617150^,1616997^";
chr17	juncbase	intron_retention	1616997	1615693	.	-	.	gene_id "intron_retention.294"; transcript_id "intron_retention.294"; gene_name ""; flanks "1616997-,1615693^"; structure "0,1^2-"; splice_chain ",1616997^1615693-";
chr17	juncbase	jcn_only_AA	15584536	15586350	.	-	.	gene_id "jcn_only_AA.323"; transcript_id "jcn_only_AA.323"; gene_name "CUFF.1898"; flanks "15584536-,15586350^"; structure "1-,2-"; splice_chain "15586265-,15584536-";
chr17	juncbase	jcn_only_AA	15584267	15586350	.	-	.	gene_id "jcn_only_AA.324"; transcript_id "jcn_only_AA.324"; gene_name "CUFF.1898"; flanks "15584267-,15586350^"; structure "1-,2-"; splice_chain "15586265-,15584267-";
chr17	juncbase	jcn_only_AA	15586278	15586350	.	-	.	gene_id "jcn_only_AA.325"; transcript_id "jcn_only_AA.325"; gene_name "CUFF.1898"; flanks "15586278-,15586350^"; structure "1-,2-"; splice_chain "15586278-,15586265-";
chr17	juncbase	alternative_donor	46990327	46993438	.	+	.	gene_id "alternative_donor.214"; transcript_id "alternative_donor.214"; gene_name "CUFF.1930"; flanks "46990327-,46993438^"; structure "1^,2^"; splice_chain "46990327^,46990383^";
chr17	juncbase	intron_retention	66508689	66509051	.	+	.	gene_id "intron_retention.295"; transcript_id "intron_retention.295"; gene_name "CUFF.1954"; flanks "66508689-,66509051^"; structure "0,1^2-"; splice_chain ",66508689^66509051-";
chr17	juncbase	alternative_donor	61562330	61562597	.	+	.	gene_id "alternative_donor.215"; transcript_id "alternative_donor.215"; gene_name "CUFF.1942"; flanks "61562330-,61562597^"; structure "1^,2^"; splice_chain "61562330^,61562427^";
chr17	juncbase	alternative_donor	61561902	61562597	.	+	.	gene_id "alternative_donor.216"; transcript_id "alternative_donor.216"; gene_name "CUFF.1942"; flanks "61561902-,61562597^"; structure "1^,2^"; splice_chain "61561902^,61562427^";
chr17	juncbase	jcn_only_AA	79478652	79478929	.	-	.	gene_id "jcn_only_AA.326"; transcript_id "jcn_only_AA.326"; gene_name "CUFF.1968"; flanks "79478652-,79478929^"; structure "1-,2-"; splice_chain "79478829-,79478652-";
chr17	juncbase	intron_retention	61562427	61562597	.	+	.	gene_id "intron_retention.296"; transcript_id "intron_retention.296"; gene_name ""; flanks "61562427-,61562597^"; structure "0,1^2-"; splice_chain ",61562427^61562597-";
chr17	juncbase	intron_retention	1939385	1939823	.	+	.	gene_id "intron_retention.297"; transcript_id "intron_retention.297"; gene_name "CUFF.1881"; flanks "1939385-,1939823^"; structure "0,1^2-"; splice_chain ",1939385^1939823-";
chr17	juncbase	jcn_only_AD	80416384	80417868	.	+	.	gene_id "jcn_only_AD.291"; transcript_id "jcn_only_AD.291"; gene_name "CUFF.1977"; flanks "80416384-,80417868^"; structure "1^,2^"; splice_chain "80416384^,80416393^";
chr17	juncbase	jcn_only_AA	15580591	15580889	.	-	.	gene_id "jcn_only_AA.327"; transcript_id "jcn_only_AA.327"; gene_name ""; flanks "15580591-,15580889^"; structure "1-,2-"; splice_chain "15580594-,15580591-";
chr17	juncbase	jcn_only_AD	1617150	1616198	.	-	.	gene_id "jcn_only_AD.292"; transcript_id "jcn_only_AD.292"; gene_name ""; flanks "1617150-,1616198^"; structure "1^,2^"; splice_chain "1617150^,1616997^";
chr17	juncbase	jcn_only_AD	6349507	6350783	.	+	.	gene_id "jcn_only_AD.293"; transcript_id "jcn_only_AD.293"; gene_name "CUFF.1890"; flanks "6349507-,6350783^"; structure "1^,2^"; splice_chain "6348662^,6349507^";
chr17	juncbase	jcn_only_AD	6348724	6350783	.	+	.	gene_id "jcn_only_AD.294"; transcript_id "jcn_only_AD.294"; gene_name "CUFF.1890"; flanks "6348724-,6350783^"; structure "1^,2^"; splice_chain "6348662^,6348724^";
chr17	juncbase	jcn_only_AA	1616349	1617150	.	-	.	gene_id "jcn_only_AA.328"; transcript_id "jcn_only_AA.328"; gene_name "CUFF.1878"; flanks "1616349-,1617150^"; structure "1-,2-"; splice_chain "1616349-,1616198-";
chr17	juncbase	jcn_only_AA	1616189	1617150	.	-	.	gene_id "jcn_only_AA.329"; transcript_id "jcn_only_AA.329"; gene_name "CUFF.1878"; flanks "1616189-,1617150^"; structure "1-,2-"; splice_chain "1616198-,1616189-";
chr17	juncbase	jcn_only_AA	1615693	1617150	.	-	.	gene_id "jcn_only_AA.330"; transcript_id "jcn_only_AA.330"; gene_name "CUFF.1878"; flanks "1615693-,1617150^"; structure "1-,2-"; splice_chain "1616198-,1615693-";
chr17	juncbase	jcn_only_AA	1615940	1617150	.	-	.	gene_id "jcn_only_AA.331"; transcript_id "jcn_only_AA.331"; gene_name "CUFF.1878"; flanks "1615940-,1617150^"; structure "1-,2-"; splice_chain "1616198-,1615940-";
chr17	juncbase	jcn_only_AA	79994184	79994260	.	-	.	gene_id "jcn_only_AA.332"; transcript_id "jcn_only_AA.332"; gene_name "CUFF.1975"; flanks "79994184-,79994260^"; structure "1-,2-"; splice_chain "79994198-,79994184-";
chr17	juncbase	jcn_only_AD	56082775	56082402	.	-	.	gene_id "jcn_only_AD.295"; transcript_id "jcn_only_AD.295"; gene_name ""; flanks "56082775-,56082402^"; structure "1^,2^"; splice_chain "56083871^,56082775^";
chr17	juncbase	jcn_only_AD	56082759	56082402	.	-	.	gene_id "jcn_only_AD.296"; transcript_id "jcn_only_AD.296"; gene_name ""; flanks "56082759-,56082402^"; structure "1^,2^"; splice_chain "56083871^,56082759^";
chr17	juncbase	intron_retention	79891183	79890839	.	-	.	gene_id "intron_retention.298"; transcript_id "intron_retention.298"; gene_name ""; flanks "79891183-,79890839^"; structure "0,1^2-"; splice_chain ",79891183^79890839-";
chr17	juncbase	alternative_acceptor	5487279	5487613	.	-	.	gene_id "alternative_acceptor.232"; transcript_id "alternative_acceptor.232"; gene_name "CUFF.1889"; flanks "5487279-,5487613^"; structure "1-,2-"; splice_chain "5487423-,5487279-";
chr17	juncbase	cassette	29687721	29701031	.	+	.	gene_id "cassette.204"; transcript_id "cassette.204"; gene_name "CUFF.1912"; flanks "29687721-,29701031^"; structure "0,1-2^"; splice_chain ",29694243-29694296^";
chr17	juncbase	intron_retention	61555151	61555292	.	+	.	gene_id "intron_retention.299"; transcript_id "intron_retention.299"; gene_name ""; flanks "61555151-,61555292^"; structure "0,1^2-"; splice_chain ",61555151^61555292-";
chr17	juncbase	cassette	37604051	37599881	.	-	.	gene_id "cassette.205"; transcript_id "cassette.205"; gene_name "CUFF.1921"; flanks "37604051-,37599881^"; structure "0,1-2^"; splice_chain ",37601822-37601664^";
chr17	juncbase	jcn_only_AD	29626624	29652838	.	+	.	gene_id "jcn_only_AD.297"; transcript_id "jcn_only_AD.297"; gene_name "CUFF.1912"; flanks "29626624-,29652838^"; structure "1^,2^"; splice_chain "29592357^,29626624^";
chr17	juncbase	jcn_only_AD	29645582	29652838	.	+	.	gene_id "jcn_only_AD.298"; transcript_id "jcn_only_AD.298"; gene_name "CUFF.1912"; flanks "29645582-,29652838^"; structure "1^,2^"; splice_chain "29592357^,29645582^";
chr17	juncbase	cassette	15603091	15604466	.	+	.	gene_id "cassette.206"; transcript_id "cassette.206"; gene_name "CUFF.1900"; flanks "15603091-,15604466^"; structure "0,1-2^"; splice_chain ",15603362-15603482^";
chr17	juncbase	alternative_acceptor	25965380	25967669	.	+	.	gene_id "alternative_acceptor.233"; transcript_id "alternative_acceptor.233"; gene_name "CUFF.1908"; flanks "25965380-,25967669^"; structure "1-,2-"; splice_chain "25967598-,25967669-";
chr17	juncbase	intron_retention	1617150	1616189	.	-	.	gene_id "intron_retention.300"; transcript_id "intron_retention.300"; gene_name ""; flanks "1617150-,1616189^"; structure "0,1^2-"; splice_chain ",1617150^1616189-";
chr17	juncbase	jcn_only_AA	57775339	57784732	.	-	.	gene_id "jcn_only_AA.333"; transcript_id "jcn_only_AA.333"; gene_name "CUFF.1939"; flanks "57775339-,57784732^"; structure "1-,2-"; splice_chain "57775339-,57756905-";
chr17	juncbase	jcn_only_AA	57777237	57784732	.	-	.	gene_id "jcn_only_AA.334"; transcript_id "jcn_only_AA.334"; gene_name "CUFF.1939"; flanks "57777237-,57784732^"; structure "1-,2-"; splice_chain "57777237-,57756905-";
chr17	juncbase	jcn_only_AA	57777550	57784732	.	-	.	gene_id "jcn_only_AA.335"; transcript_id "jcn_only_AA.335"; gene_name "CUFF.1939"; flanks "57777550-,57784732^"; structure "1-,2-"; splice_chain "57777550-,57756905-";
chr17	juncbase	intron_retention	66509119	66511535	.	+	.	gene_id "intron_retention.301"; transcript_id "intron_retention.301"; gene_name ""; flanks "66509119-,66511535^"; structure "0,1^2-"; splice_chain ",66509119^66511535-";
chr17	juncbase	jcn_only_AD	79994067	79993939	.	-	.	gene_id "jcn_only_AD.299"; transcript_id "jcn_only_AD.299"; gene_name "CUFF.1975"; flanks "79994067-,79993939^"; structure "1^,2^"; splice_chain "79994067^,79994058^";
chr17	juncbase	jcn_only_AD	79994023	79993939	.	-	.	gene_id "jcn_only_AD.300"; transcript_id "jcn_only_AD.300"; gene_name "CUFF.1975"; flanks "79994023-,79993939^"; structure "1^,2^"; splice_chain "79994058^,79994023^";
chr17	juncbase	intron_retention	79478953	79478604	.	-	.	gene_id "intron_retention.302"; transcript_id "intron_retention.302"; gene_name ""; flanks "79478953-,79478604^"; structure "0,1^2-"; splice_chain ",79478953^79478604-";
chr17	juncbase	intron_retention	61562330	61562597	.	+	.	gene_id "intron_retention.303"; transcript_id "intron_retention.303"; gene_name ""; flanks "61562330-,61562597^"; structure "0,1^2-"; splice_chain ",61562330^61562597-";
chr17	juncbase	cassette	8644792	8638572	.	-	.	gene_id "cassette.207"; transcript_id "cassette.207"; gene_name "CUFF.1895"; flanks "8644792-,8638572^"; structure "0,1-2^"; splice_chain ",8638929-8638708^";
chr17	juncbase	jcn_only_AD	79994058	79993939	.	-	.	gene_id "jcn_only_AD.301"; transcript_id "jcn_only_AD.301"; gene_name ""; flanks "79994058-,79993939^"; structure "1^,2^"; splice_chain "79994067^,79994058^";
chr17	juncbase	jcn_only_AD	79994023	79993939	.	-	.	gene_id "jcn_only_AD.302"; transcript_id "jcn_only_AD.302"; gene_name ""; flanks "79994023-,79993939^"; structure "1^,2^"; splice_chain "79994067^,79994023^";
chr17	juncbase	intron_retention	29701147	29705906	.	+	.	gene_id "intron_retention.304"; transcript_id "intron_retention.304"; gene_name ""; flanks "29701147-,29705906^"; structure "0,1^2-"; splice_chain ",29701147^29705906-";
chr17	juncbase	jcn_only_AD	79895138	79894737	.	-	.	gene_id "jcn_only_AD.303"; transcript_id "jcn_only_AD.303"; gene_name "CUFF.1972"; flanks "79895138-,79894737^"; structure "1^,2^"; splice_chain "79895138^,79895104^";
chr17	juncbase	jcn_only_AD	79895404	79894737	.	-	.	gene_id "jcn_only_AD.304"; transcript_id "jcn_only_AD.304"; gene_name "CUFF.1972"; flanks "79895404-,79894737^"; structure "1^,2^"; splice_chain "79895404^,79895104^";
chr17	juncbase	jcn_only_AD	79895134	79894737	.	-	.	gene_id "jcn_only_AD.305"; transcript_id "jcn_only_AD.305"; gene_name "CUFF.1972"; flanks "79895134-,79894737^"; structure "1^,2^"; splice_chain "79895134^,79895104^";
chr17	juncbase	jcn_only_AD	79895056	79894737	.	-	.	gene_id "jcn_only_AD.306"; transcript_id "jcn_only_AD.306"; gene_name "CUFF.1972"; flanks "79895056-,79894737^"; structure "1^,2^"; splice_chain "79895104^,79895056^";
chr17	juncbase	jcn_only_AD	79895069	79894737	.	-	.	gene_id "jcn_only_AD.307"; transcript_id "jcn_only_AD.307"; gene_name "CUFF.1972"; flanks "79895069-,79894737^"; structure "1^,2^"; splice_chain "79895104^,79895069^";
chr17	juncbase	jcn_only_AD	79894846	79894737	.	-	.	gene_id "jcn_only_AD.308"; transcript_id "jcn_only_AD.308"; gene_name "CUFF.1972"; flanks "79894846-,79894737^"; structure "1^,2^"; splice_chain "79895104^,79894846^";
chr17	juncbase	intron_retention	1943668	1943799	.	+	.	gene_id "intron_retention.305"; transcript_id "intron_retention.305"; gene_name "CUFF.1881"; flanks "1943668-,1943799^"; structure "0,1^2-"; splice_chain ",1943668^1943799-";
chr17	juncbase	jcn_only_AA	1616219	1616997	.	-	.	gene_id "jcn_only_AA.336"; transcript_id "jcn_only_AA.336"; gene_name "CUFF.1878"; flanks "1616219-,1616997^"; structure "1-,2-"; splice_chain "1616349-,1616219-";
chr17	juncbase	jcn_only_AA	1615693	1616997	.	-	.	gene_id "jcn_only_AA.337"; transcript_id "jcn_only_AA.337"; gene_name "CUFF.1878"; flanks "1615693-,1616997^"; structure "1-,2-"; splice_chain "1616349-,1615693-";
chr17	juncbase	jcn_only_AA	1616189	1616997	.	-	.	gene_id "jcn_only_AA.338"; transcript_id "jcn_only_AA.338"; gene_name "CUFF.1878"; flanks "1616189-,1616997^"; structure "1-,2-"; splice_chain "1616349-,1616189-";
chr17	juncbase	jcn_only_AA	1616198	1616997	.	-	.	gene_id "jcn_only_AA.339"; transcript_id "jcn_only_AA.339"; gene_name "CUFF.1878"; flanks "1616198-,1616997^"; structure "1-,2-"; splice_chain "1616349-,1616198-";
chr17	juncbase	jcn_only_AD	6348724	6350783	.	+	.	gene_id "jcn_only_AD.309"; transcript_id "jcn_only_AD.309"; gene_name "CUFF.1890"; flanks "6348724-,6350783^"; structure "1^,2^"; splice_chain "6348724^,6349507^";
chr17	juncbase	jcn_only_AD	6348662	6350783	.	+	.	gene_id "jcn_only_AD.310"; transcript_id "jcn_only_AD.310"; gene_name "CUFF.1890"; flanks "6348662-,6350783^"; structure "1^,2^"; splice_chain "6348662^,6349507^";
chr17	juncbase	alternative_donor	80416384	80417868	.	+	.	gene_id "alternative_donor.217"; transcript_id "alternative_donor.217"; gene_name "CUFF.1977"; flanks "80416384-,80417868^"; structure "1^,2^"; splice_chain "80416384^,80416393^";
chr17	juncbase	jcn_only_AA	1616219	1616997	.	-	.	gene_id "jcn_only_AA.340"; transcript_id "jcn_only_AA.340"; gene_name "CUFF.1878"; flanks "1616219-,1616997^"; structure "1-,2-"; splice_chain "1616219-,1616189-";
chr17	juncbase	jcn_only_AA	1615693	1616997	.	-	.	gene_id "jcn_only_AA.341"; transcript_id "jcn_only_AA.341"; gene_name "CUFF.1878"; flanks "1615693-,1616997^"; structure "1-,2-"; splice_chain "1616189-,1615693-";
chr17	juncbase	jcn_only_AA	1616349	1616997	.	-	.	gene_id "jcn_only_AA.342"; transcript_id "jcn_only_AA.342"; gene_name "CUFF.1878"; flanks "1616349-,1616997^"; structure "1-,2-"; splice_chain "1616349-,1616189-";
chr17	juncbase	jcn_only_AA	1616198	1616997	.	-	.	gene_id "jcn_only_AA.343"; transcript_id "jcn_only_AA.343"; gene_name "CUFF.1878"; flanks "1616198-,1616997^"; structure "1-,2-"; splice_chain "1616198-,1616189-";
chr17	juncbase	cassette	15539350	15535028	.	-	.	gene_id "cassette.208"; transcript_id "cassette.208"; gene_name "CUFF.1898"; flanks "15539350-,15535028^"; structure "0,1-2^"; splice_chain ",15535988-15535823^";
chr17	juncbase	cassette	66274230	66268908	.	-	.	gene_id "cassette.209"; transcript_id "cassette.209"; gene_name "CUFF.1953"; flanks "66274230-,66268908^"; structure "0,1-2^"; splice_chain ",66270211-66270068^";
chr17	juncbase	jcn_only_AD	79479490	79479386	.	-	.	gene_id "jcn_only_AD.311"; transcript_id "jcn_only_AD.311"; gene_name "CUFF.1968"; flanks "79479490-,79479386^"; structure "1^,2^"; splice_chain "79479632^,79479490^";
chr17	juncbase	jcn_only_AD	79481573	79479386	.	-	.	gene_id "jcn_only_AD.312"; transcript_id "jcn_only_AD.312"; gene_name "CUFF.1968"; flanks "79481573-,79479386^"; structure "1^,2^"; splice_chain "79481573^,79479632^";
chr17	juncbase	jcn_only_AD	79490668	79479386	.	-	.	gene_id "jcn_only_AD.313"; transcript_id "jcn_only_AD.313"; gene_name "CUFF.1968"; flanks "79490668-,79479386^"; structure "1^,2^"; splice_chain "79490668^,79479632^";
chr17	juncbase	jcn_only_AD	79479760	79479386	.	-	.	gene_id "jcn_only_AD.314"; transcript_id "jcn_only_AD.314"; gene_name "CUFF.1968"; flanks "79479760-,79479386^"; structure "1^,2^"; splice_chain "79479760^,79479632^";
chr17	juncbase	jcn_only_AD	79479641	79479386	.	-	.	gene_id "jcn_only_AD.315"; transcript_id "jcn_only_AD.315"; gene_name "CUFF.1968"; flanks "79479641-,79479386^"; structure "1^,2^"; splice_chain "79479641^,79479632^";
chr17	juncbase	jcn_only_AD	15584365	15584267	.	-	.	gene_id "jcn_only_AD.316"; transcript_id "jcn_only_AD.316"; gene_name "CUFF.1898"; flanks "15584365-,15584267^"; structure "1^,2^"; splice_chain "15586168^,15584365^";
chr17	juncbase	jcn_only_AD	15586350	15584267	.	-	.	gene_id "jcn_only_AD.317"; transcript_id "jcn_only_AD.317"; gene_name "CUFF.1898"; flanks "15586350-,15584267^"; structure "1^,2^"; splice_chain "15586350^,15586168^";
chr17	juncbase	jcn_only_AD	15586175	15584267	.	-	.	gene_id "jcn_only_AD.318"; transcript_id "jcn_only_AD.318"; gene_name "CUFF.1898"; flanks "15586175-,15584267^"; structure "1^,2^"; splice_chain "15586175^,15586168^";
chr17	juncbase	jcn_only_AA	1616349	1617150	.	-	.	gene_id "jcn_only_AA.344"; transcript_id "jcn_only_AA.344"; gene_name "CUFF.1878"; flanks "1616349-,1617150^"; structure "1-,2-"; splice_chain "1616349-,1615693-";
chr17	juncbase	jcn_only_AA	1616198	1617150	.	-	.	gene_id "jcn_only_AA.345"; transcript_id "jcn_only_AA.345"; gene_name "CUFF.1878"; flanks "1616198-,1617150^"; structure "1-,2-"; splice_chain "1616198-,1615693-";
chr17	juncbase	jcn_only_AA	1616189	1617150	.	-	.	gene_id "jcn_only_AA.346"; transcript_id "jcn_only_AA.346"; gene_name "CUFF.1878"; flanks "1616189-,1617150^"; structure "1-,2-"; splice_chain "1616189-,1615693-";
chr17	juncbase	jcn_only_AA	1615940	1617150	.	-	.	gene_id "jcn_only_AA.347"; transcript_id "jcn_only_AA.347"; gene_name "CUFF.1878"; flanks "1615940-,1617150^"; structure "1-,2-"; splice_chain "1615940-,1615693-";
chr17	juncbase	alternative_donor	61562427	61562597	.	+	.	gene_id "alternative_donor.218"; transcript_id "alternative_donor.218"; gene_name "CUFF.1942"; flanks "61562427-,61562597^"; structure "1^,2^"; splice_chain "61562330^,61562427^";
chr17	juncbase	alternative_donor	61561902	61562597	.	+	.	gene_id "alternative_donor.219"; transcript_id "alternative_donor.219"; gene_name "CUFF.1942"; flanks "61561902-,61562597^"; structure "1^,2^"; splice_chain "61561902^,61562330^";
chr17	juncbase	alternative_donor	15586350	15584536	.	-	.	gene_id "alternative_donor.220"; transcript_id "alternative_donor.220"; gene_name "CUFF.1929"; flanks "15586350-,15584536^"; structure "1^,2^"; splice_chain "15586350^,15586168^";
chr17	juncbase	intron_retention	66509111	66511128	.	+	.	gene_id "intron_retention.306"; transcript_id "intron_retention.306"; gene_name ""; flanks "66509111-,66511128^"; structure "0,1^2-"; splice_chain ",66509111^66511128-";
chr17	juncbase	cassette	1619424	1617308	.	-	.	gene_id "cassette.210"; transcript_id "cassette.210"; gene_name "CUFF.1878"; flanks "1619424-,1617308^"; structure "0,1-2^"; splice_chain ",1617747-1617665^";
chr17	juncbase	jcn_only_AA	5409297	5421066	.	-	.	gene_id "jcn_only_AA.348"; transcript_id "jcn_only_AA.348"; gene_name "CUFF.1889"; flanks "5409297-,5421066^"; structure "1-,2-"; splice_chain "5409297-,5405192-";
chr17	juncbase	jcn_only_AA	5418837	5421066	.	-	.	gene_id "jcn_only_AA.349"; transcript_id "jcn_only_AA.349"; gene_name "CUFF.1889"; flanks "5418837-,5421066^"; structure "1-,2-"; splice_chain "5418837-,5405192-";
chr17	juncbase	intron_retention	80436794	80438958	.	+	.	gene_id "intron_retention.307"; transcript_id "intron_retention.307"; gene_name "CUFF.1977"; flanks "80436794-,80438958^"; structure "0,1^2-"; splice_chain ",80436794^80438958-";
chr17	juncbase	intron_retention	61908785	61908866	.	+	.	gene_id "intron_retention.308"; transcript_id "intron_retention.308"; gene_name "CUFF.1944"; flanks "61908785-,61908866^"; structure "0,1^2-"; splice_chain ",61908785^61908866-";
chr17	juncbase	intron_retention	5487613	5487423	.	-	.	gene_id "intron_retention.309"; transcript_id "intron_retention.309"; gene_name "CUFF.1889"; flanks "5487613-,5487423^"; structure "0,1^2-"; splice_chain ",5487613^5487423-";
chr17	juncbase	intron_retention	79225995	79225412	.	-	.	gene_id "intron_retention.310"; transcript_id "intron_retention.310"; gene_name "CUFF.1964"; flanks "79225995-,79225412^"; structure "0,1^2-"; splice_chain ",79225995^79225412-";
chr17	juncbase	alternative_donor	61904874	61905479	.	+	.	gene_id "alternative_donor.221"; transcript_id "alternative_donor.221"; gene_name ""; flanks "61904874-,61905479^"; structure "1^,2^"; splice_chain "61904874^,61905283^";
chr17	juncbase	intron_retention	79895104	79894737	.	-	.	gene_id "intron_retention.311"; transcript_id "intron_retention.311"; gene_name ""; flanks "79895104-,79894737^"; structure "0,1^2-"; splice_chain ",79895104^79894737-";
chr17	juncbase	intron_retention	5487613	5487279	.	-	.	gene_id "intron_retention.312"; transcript_id "intron_retention.312"; gene_name ""; flanks "5487613-,5487279^"; structure "0,1^2-"; splice_chain ",5487613^5487279-";
chr17	juncbase	jcn_only_AD	79225293	79220861	.	-	.	gene_id "jcn_only_AD.319"; transcript_id "jcn_only_AD.319"; gene_name "CUFF.1964"; flanks "79225293-,79220861^"; structure "1^,2^"; splice_chain "79225293^,79223870^";
chr17	juncbase	intron_retention	57776232	57775339	.	-	.	gene_id "intron_retention.313"; transcript_id "intron_retention.313"; gene_name ""; flanks "57776232-,57775339^"; structure "0,1^2-"; splice_chain ",57776232^57775339-";
chr17	juncbase	jcn_only_AD	15584179	15562190	.	-	.	gene_id "jcn_only_AD.320"; transcript_id "jcn_only_AD.320"; gene_name "CUFF.1899"; flanks "15584179-,15562190^"; structure "1^,2^"; splice_chain "15584179^,15580490^";
chr17	juncbase	intron_retention	79994260	79994198	.	-	.	gene_id "intron_retention.314"; transcript_id "intron_retention.314"; gene_name ""; flanks "79994260-,79994198^"; structure "0,1^2-"; splice_chain ",79994260^79994198-";
chr17	juncbase	alternative_acceptor	61574346	61584417	.	+	.	gene_id "alternative_acceptor.234"; transcript_id "alternative_acceptor.234"; gene_name ""; flanks "61574346-,61584417^"; structure "1-,2-"; splice_chain "61574498-,61584417-";
chr17	juncbase	cassette	25958330	25967598	.	+	.	gene_id "cassette.211"; transcript_id "cassette.211"; gene_name "CUFF.1908"; flanks "25958330-,25967598^"; structure "0,1-2^"; splice_chain ",25965289-25965380^";
chr17	juncbase	alternative_acceptor	61904874	61905211	.	+	.	gene_id "alternative_acceptor.235"; transcript_id "alternative_acceptor.235"; gene_name "CUFF.1944"; flanks "61904874-,61905211^"; structure "1-,2-"; splice_chain "61905034-,61905211-";
chr17	juncbase	alternative_acceptor	61904874	61905189	.	+	.	gene_id "alternative_acceptor.236"; transcript_id "alternative_acceptor.236"; gene_name "CUFF.1944"; flanks "61904874-,61905189^"; structure "1-,2-"; splice_chain "61905034-,61905189-";
chr17	juncbase	alternative_acceptor	61904874	61905479	.	+	.	gene_id "alternative_acceptor.237"; transcript_id "alternative_acceptor.237"; gene_name "CUFF.1944"; flanks "61904874-,61905479^"; structure "1-,2-"; splice_chain "61905034-,61905479-";
chr17	juncbase	alternative_acceptor	61904874	61905498	.	+	.	gene_id "alternative_acceptor.238"; transcript_id "alternative_acceptor.238"; gene_name "CUFF.1944"; flanks "61904874-,61905498^"; structure "1-,2-"; splice_chain "61905034-,61905498-";
chr17	juncbase	intron_retention	76993573	76993411	.	-	.	gene_id "intron_retention.315"; transcript_id "intron_retention.315"; gene_name ""; flanks "76993573-,76993411^"; structure "0,1^2-"; splice_chain ",76993573^76993411-";
chr17	juncbase	alternative_acceptor	61904874	61905034	.	+	.	gene_id "alternative_acceptor.239"; transcript_id "alternative_acceptor.239"; gene_name ""; flanks "61904874-,61905034^"; structure "1-,2-"; splice_chain "61905034-,61905498-";
chr17	juncbase	alternative_acceptor	61904874	61905211	.	+	.	gene_id "alternative_acceptor.240"; transcript_id "alternative_acceptor.240"; gene_name ""; flanks "61904874-,61905211^"; structure "1-,2-"; splice_chain "61905211-,61905498-";
chr17	juncbase	alternative_acceptor	61904874	61905189	.	+	.	gene_id "alternative_acceptor.241"; transcript_id "alternative_acceptor.241"; gene_name ""; flanks "61904874-,61905189^"; structure "1-,2-"; splice_chain "61905189-,61905498-";
chr17	juncbase	alternative_acceptor	61904874	61905479	.	+	.	gene_id "alternative_acceptor.242"; transcript_id "alternative_acceptor.242"; gene_name ""; flanks "61904874-,61905479^"; structure "1-,2-"; splice_chain "61905479-,61905498-";
chr17	juncbase	jcn_only_AA	66519067	66519866	.	+	.	gene_id "jcn_only_AA.350"; transcript_id "jcn_only_AA.350"; gene_name "CUFF.1954"; flanks "66519067-,66519866^"; structure "1-,2-"; splice_chain "66519855-,66519866-";
chr17	juncbase	alternative_donor	79895138	79894737	.	-	.	gene_id "alternative_donor.222"; transcript_id "alternative_donor.222"; gene_name "CUFF.1972"; flanks "79895138-,79894737^"; structure "1^,2^"; splice_chain "79895138^,79895056^";
chr17	juncbase	alternative_donor	79895404	79894737	.	-	.	gene_id "alternative_donor.223"; transcript_id "alternative_donor.223"; gene_name "CUFF.1972"; flanks "79895404-,79894737^"; structure "1^,2^"; splice_chain "79895404^,79895056^";
chr17	juncbase	alternative_donor	79895134	79894737	.	-	.	gene_id "alternative_donor.224"; transcript_id "alternative_donor.224"; gene_name "CUFF.1972"; flanks "79895134-,79894737^"; structure "1^,2^"; splice_chain "79895134^,79895056^";
chr17	juncbase	alternative_donor	79895069	79894737	.	-	.	gene_id "alternative_donor.225"; transcript_id "alternative_donor.225"; gene_name "CUFF.1972"; flanks "79895069-,79894737^"; structure "1^,2^"; splice_chain "79895069^,79895056^";
chr17	juncbase	alternative_donor	79894846	79894737	.	-	.	gene_id "alternative_donor.226"; transcript_id "alternative_donor.226"; gene_name "CUFF.1972"; flanks "79894846-,79894737^"; structure "1^,2^"; splice_chain "79895056^,79894846^";
chr17	juncbase	alternative_donor	79895104	79894737	.	-	.	gene_id "alternative_donor.227"; transcript_id "alternative_donor.227"; gene_name "CUFF.1972"; flanks "79895104-,79894737^"; structure "1^,2^"; splice_chain "79895104^,79895056^";
chr17	juncbase	intron_retention	29685640	29685987	.	+	.	gene_id "intron_retention.316"; transcript_id "intron_retention.316"; gene_name "CUFF.1912"; flanks "29685640-,29685987^"; structure "0,1^2-"; splice_chain ",29685640^29685987-";
chr17	juncbase	cassette	61562733	61563918	.	+	.	gene_id "cassette.212"; transcript_id "cassette.212"; gene_name "CUFF.1942"; flanks "61562733-,61563918^"; structure "0,1-2^"; splice_chain ",61563720-61563732^";
chr17	juncbase	intron_retention	56082284	56081079	.	-	.	gene_id "intron_retention.317"; transcript_id "intron_retention.317"; gene_name ""; flanks "56082284-,56081079^"; structure "0,1^2-"; splice_chain ",56082284^56081079-";
chr17	juncbase	cassette	37596876	37595446	.	-	.	gene_id "cassette.213"; transcript_id "cassette.213"; gene_name "CUFF.1921"; flanks "37596876-,37595446^"; structure "0,1-2^"; splice_chain ",37596771-37596639^";
chr17	juncbase	intron_retention	6348662	6350783	.	+	.	gene_id "intron_retention.318"; transcript_id "intron_retention.318"; gene_name ""; flanks "6348662-,6350783^"; structure "0,1^2-"; splice_chain ",6348662^6350783-";
chr17	juncbase	jcn_only_AD	57784732	57775339	.	-	.	gene_id "jcn_only_AD.321"; transcript_id "jcn_only_AD.321"; gene_name ""; flanks "57784732-,57775339^"; structure "1^,2^"; splice_chain "57784732^,57776232^";
chr17	juncbase	jcn_only_AD	79895138	79894737	.	-	.	gene_id "jcn_only_AD.322"; transcript_id "jcn_only_AD.322"; gene_name "CUFF.1972"; flanks "79895138-,79894737^"; structure "1^,2^"; splice_chain "79895138^,79895069^";
chr17	juncbase	jcn_only_AD	79895404	79894737	.	-	.	gene_id "jcn_only_AD.323"; transcript_id "jcn_only_AD.323"; gene_name "CUFF.1972"; flanks "79895404-,79894737^"; structure "1^,2^"; splice_chain "79895404^,79895069^";
chr17	juncbase	jcn_only_AD	79895134	79894737	.	-	.	gene_id "jcn_only_AD.324"; transcript_id "jcn_only_AD.324"; gene_name "CUFF.1972"; flanks "79895134-,79894737^"; structure "1^,2^"; splice_chain "79895134^,79895069^";
chr17	juncbase	jcn_only_AD	79895056	79894737	.	-	.	gene_id "jcn_only_AD.325"; transcript_id "jcn_only_AD.325"; gene_name "CUFF.1972"; flanks "79895056-,79894737^"; structure "1^,2^"; splice_chain "79895069^,79895056^";
chr17	juncbase	jcn_only_AD	79894846	79894737	.	-	.	gene_id "jcn_only_AD.326"; transcript_id "jcn_only_AD.326"; gene_name "CUFF.1972"; flanks "79894846-,79894737^"; structure "1^,2^"; splice_chain "79895069^,79894846^";
chr17	juncbase	jcn_only_AD	79895104	79894737	.	-	.	gene_id "jcn_only_AD.327"; transcript_id "jcn_only_AD.327"; gene_name "CUFF.1972"; flanks "79895104-,79894737^"; structure "1^,2^"; splice_chain "79895104^,79895069^";
chr17	juncbase	cassette	61555459	61557130	.	+	.	gene_id "cassette.214"; transcript_id "cassette.214"; gene_name "CUFF.1942"; flanks "61555459-,61557130^"; structure "0,1-2^"; splice_chain ",61556368-61556461^";
chr17	juncbase	jcn_only_AD	36348511	36345478	.	-	.	gene_id "jcn_only_AD.328"; transcript_id "jcn_only_AD.328"; gene_name ""; flanks "36348511-,36345478^"; structure "1^,2^"; splice_chain "36348511^,36346438^";
chr17	juncbase	jcn_only_AD	1945169	1945899	.	+	.	gene_id "jcn_only_AD.329"; transcript_id "jcn_only_AD.329"; gene_name "CUFF.1881"; flanks "1945169-,1945899^"; structure "1^,2^"; splice_chain "1945169^,1945525^";
chr17	juncbase	jcn_only_AD	79479490	79479386	.	-	.	gene_id "jcn_only_AD.330"; transcript_id "jcn_only_AD.330"; gene_name "CUFF.1968"; flanks "79479490-,79479386^"; structure "1^,2^"; splice_chain "79479641^,79479490^";
chr17	juncbase	jcn_only_AD	79481573	79479386	.	-	.	gene_id "jcn_only_AD.331"; transcript_id "jcn_only_AD.331"; gene_name "CUFF.1968"; flanks "79481573-,79479386^"; structure "1^,2^"; splice_chain "79481573^,79479641^";
chr17	juncbase	jcn_only_AD	79490668	79479386	.	-	.	gene_id "jcn_only_AD.332"; transcript_id "jcn_only_AD.332"; gene_name "CUFF.1968"; flanks "79490668-,79479386^"; structure "1^,2^"; splice_chain "79490668^,79479641^";
chr17	juncbase	jcn_only_AD	79479760	79479386	.	-	.	gene_id "jcn_only_AD.333"; transcript_id "jcn_only_AD.333"; gene_name "CUFF.1968"; flanks "79479760-,79479386^"; structure "1^,2^"; splice_chain "79479760^,79479641^";
chr17	juncbase	jcn_only_AD	79479632	79479386	.	-	.	gene_id "jcn_only_AD.334"; transcript_id "jcn_only_AD.334"; gene_name "CUFF.1968"; flanks "79479632-,79479386^"; structure "1^,2^"; splice_chain "79479641^,79479632^";
chr17	juncbase	intron_retention	56082284	56081362	.	-	.	gene_id "intron_retention.319"; transcript_id "intron_retention.319"; gene_name "CUFF.1936"; flanks "56082284-,56081362^"; structure "0,1^2-"; splice_chain ",56082284^56081362-";
chr17	juncbase	jcn_only_AA	61904874	61905034	.	+	.	gene_id "jcn_only_AA.351"; transcript_id "jcn_only_AA.351"; gene_name "CUFF.1944"; flanks "61904874-,61905034^"; structure "1-,2-"; splice_chain "61905034-,61905189-";
chr17	juncbase	jcn_only_AA	61904874	61905211	.	+	.	gene_id "jcn_only_AA.352"; transcript_id "jcn_only_AA.352"; gene_name "CUFF.1944"; flanks "61904874-,61905211^"; structure "1-,2-"; splice_chain "61905189-,61905211-";
chr17	juncbase	jcn_only_AA	61904874	61905479	.	+	.	gene_id "jcn_only_AA.353"; transcript_id "jcn_only_AA.353"; gene_name "CUFF.1944"; flanks "61904874-,61905479^"; structure "1-,2-"; splice_chain "61905189-,61905479-";
chr17	juncbase	jcn_only_AA	61904874	61905498	.	+	.	gene_id "jcn_only_AA.354"; transcript_id "jcn_only_AA.354"; gene_name "CUFF.1944"; flanks "61904874-,61905498^"; structure "1-,2-"; splice_chain "61905189-,61905498-";
chr17	juncbase	alternative_acceptor	1616349	1617150	.	-	.	gene_id "alternative_acceptor.243"; transcript_id "alternative_acceptor.243"; gene_name "CUFF.1878"; flanks "1616349-,1617150^"; structure "1-,2-"; splice_chain "1616349-,1615940-";
chr17	juncbase	alternative_acceptor	1616198	1617150	.	-	.	gene_id "alternative_acceptor.244"; transcript_id "alternative_acceptor.244"; gene_name "CUFF.1878"; flanks "1616198-,1617150^"; structure "1-,2-"; splice_chain "1616198-,1615940-";
chr17	juncbase	alternative_acceptor	1616189	1617150	.	-	.	gene_id "alternative_acceptor.245"; transcript_id "alternative_acceptor.245"; gene_name "CUFF.1878"; flanks "1616189-,1617150^"; structure "1-,2-"; splice_chain "1616189-,1615940-";
chr17	juncbase	alternative_acceptor	1615693	1617150	.	-	.	gene_id "alternative_acceptor.246"; transcript_id "alternative_acceptor.246"; gene_name "CUFF.1878"; flanks "1615693-,1617150^"; structure "1-,2-"; splice_chain "1615940-,1615693-";
chr17	juncbase	intron_retention	61908295	61908396	.	+	.	gene_id "intron_retention.320"; transcript_id "intron_retention.320"; gene_name "CUFF.1944"; flanks "61908295-,61908396^"; structure "0,1^2-"; splice_chain ",61908295^61908396-";
chr17	juncbase	jcn_only_AD	46990327	46993438	.	+	.	gene_id "jcn_only_AD.335"; transcript_id "jcn_only_AD.335"; gene_name "CUFF.1930"; flanks "46990327-,46993438^"; structure "1^,2^"; splice_chain "46990327^,46990383^";
chr17	juncbase	alternative_acceptor	15584536	15586350	.	-	.	gene_id "alternative_acceptor.247"; transcript_id "alternative_acceptor.247"; gene_name "CUFF.1898"; flanks "15584536-,15586350^"; structure "1-,2-"; splice_chain "15586278-,15584536-";
chr17	juncbase	alternative_acceptor	15586265	15586350	.	-	.	gene_id "alternative_acceptor.248"; transcript_id "alternative_acceptor.248"; gene_name "CUFF.1898"; flanks "15586265-,15586350^"; structure "1-,2-"; splice_chain "15586278-,15586265-";
chr17	juncbase	alternative_acceptor	15584267	15586350	.	-	.	gene_id "alternative_acceptor.249"; transcript_id "alternative_acceptor.249"; gene_name "CUFF.1898"; flanks "15584267-,15586350^"; structure "1-,2-"; splice_chain "15586278-,15584267-";
chr17	juncbase	alternative_donor	29592357	29652838	.	+	.	gene_id "alternative_donor.228"; transcript_id "alternative_donor.228"; gene_name "CUFF.1912"; flanks "29592357-,29652838^"; structure "1^,2^"; splice_chain "29592357^,29626624^";
chr17	juncbase	alternative_donor	29645582	29652838	.	+	.	gene_id "alternative_donor.229"; transcript_id "alternative_donor.229"; gene_name "CUFF.1912"; flanks "29645582-,29652838^"; structure "1^,2^"; splice_chain "29626624^,29645582^";
chr17	juncbase	intron_retention	79994597	79994519	.	-	.	gene_id "intron_retention.321"; transcript_id "intron_retention.321"; gene_name "CUFF.1975"; flanks "79994597-,79994519^"; structure "0,1^2-"; splice_chain ",79994597^79994519-";
chr17	juncbase	alternative_acceptor	61904874	61905034	.	+	.	gene_id "alternative_acceptor.250"; transcript_id "alternative_acceptor.250"; gene_name "CUFF.1944"; flanks "61904874-,61905034^"; structure "1-,2-"; splice_chain "61905034-,61905211-";
chr17	juncbase	alternative_acceptor	61904874	61905189	.	+	.	gene_id "alternative_acceptor.251"; transcript_id "alternative_acceptor.251"; gene_name "CUFF.1944"; flanks "61904874-,61905189^"; structure "1-,2-"; splice_chain "61905189-,61905211-";
chr17	juncbase	alternative_acceptor	61904874	61905479	.	+	.	gene_id "alternative_acceptor.252"; transcript_id "alternative_acceptor.252"; gene_name "CUFF.1944"; flanks "61904874-,61905479^"; structure "1-,2-"; splice_chain "61905211-,61905479-";
chr17	juncbase	alternative_acceptor	61904874	61905498	.	+	.	gene_id "alternative_acceptor.253"; transcript_id "alternative_acceptor.253"; gene_name "CUFF.1944"; flanks "61904874-,61905498^"; structure "1-,2-"; splice_chain "61905211-,61905498-";
chr17	juncbase	alternative_donor	79994058	79993939	.	-	.	gene_id "alternative_donor.230"; transcript_id "alternative_donor.230"; gene_name ""; flanks "79994058-,79993939^"; structure "1^,2^"; splice_chain "79994067^,79994058^";
chr17	juncbase	alternative_donor	79994023	79993939	.	-	.	gene_id "alternative_donor.231"; transcript_id "alternative_donor.231"; gene_name ""; flanks "79994023-,79993939^"; structure "1^,2^"; splice_chain "79994067^,79994023^";
chr17	juncbase	jcn_only_AD	79895138	79894737	.	-	.	gene_id "jcn_only_AD.336"; transcript_id "jcn_only_AD.336"; gene_name "CUFF.1972"; flanks "79895138-,79894737^"; structure "1^,2^"; splice_chain "79895138^,79894846^";
chr17	juncbase	jcn_only_AD	79895404	79894737	.	-	.	gene_id "jcn_only_AD.337"; transcript_id "jcn_only_AD.337"; gene_name "CUFF.1972"; flanks "79895404-,79894737^"; structure "1^,2^"; splice_chain "79895404^,79894846^";
chr17	juncbase	jcn_only_AD	79895134	79894737	.	-	.	gene_id "jcn_only_AD.338"; transcript_id "jcn_only_AD.338"; gene_name "CUFF.1972"; flanks "79895134-,79894737^"; structure "1^,2^"; splice_chain "79895134^,79894846^";
chr17	juncbase	jcn_only_AD	79895056	79894737	.	-	.	gene_id "jcn_only_AD.339"; transcript_id "jcn_only_AD.339"; gene_name "CUFF.1972"; flanks "79895056-,79894737^"; structure "1^,2^"; splice_chain "79895056^,79894846^";
chr17	juncbase	jcn_only_AD	79895069	79894737	.	-	.	gene_id "jcn_only_AD.340"; transcript_id "jcn_only_AD.340"; gene_name "CUFF.1972"; flanks "79895069-,79894737^"; structure "1^,2^"; splice_chain "79895069^,79894846^";
chr17	juncbase	jcn_only_AD	79895104	79894737	.	-	.	gene_id "jcn_only_AD.341"; transcript_id "jcn_only_AD.341"; gene_name "CUFF.1972"; flanks "79895104-,79894737^"; structure "1^,2^"; splice_chain "79895104^,79894846^";
chr17	juncbase	jcn_only_AA	46986182	46993438	.	+	.	gene_id "jcn_only_AA.355"; transcript_id "jcn_only_AA.355"; gene_name "CUFF.1954"; flanks "46986182-,46993438^"; structure "1-,2-"; splice_chain "46988170-,46993438-";
chr17	juncbase	jcn_only_AA	15580996	15584179	.	-	.	gene_id "jcn_only_AA.356"; transcript_id "jcn_only_AA.356"; gene_name "CUFF.1898"; flanks "15580996-,15584179^"; structure "1-,2-"; splice_chain "15580996-,15562190-";
chr17	juncbase	jcn_only_AA	15581035	15584179	.	-	.	gene_id "jcn_only_AA.357"; transcript_id "jcn_only_AA.357"; gene_name "CUFF.1898"; flanks "15581035-,15584179^"; structure "1-,2-"; splice_chain "15581035-,15562190-";
chr17	juncbase	jcn_only_AA	15580594	15584179	.	-	.	gene_id "jcn_only_AA.358"; transcript_id "jcn_only_AA.358"; gene_name "CUFF.1898"; flanks "15580594-,15584179^"; structure "1-,2-"; splice_chain "15580594-,15562190-";
chr17	juncbase	jcn_only_AA	15557745	15584179	.	-	.	gene_id "jcn_only_AA.359"; transcript_id "jcn_only_AA.359"; gene_name "CUFF.1898"; flanks "15557745-,15584179^"; structure "1-,2-"; splice_chain "15562190-,15557745-";
chr17	juncbase	jcn_only_AA	15546130	15584179	.	-	.	gene_id "jcn_only_AA.360"; transcript_id "jcn_only_AA.360"; gene_name "CUFF.1898"; flanks "15546130-,15584179^"; structure "1-,2-"; splice_chain "15562190-,15546130-";
chr17	juncbase	cassette	61571831	61574159	.	+	.	gene_id "cassette.215"; transcript_id "cassette.215"; gene_name "CUFF.1942"; flanks "61571831-,61574159^"; structure "0,1-2^"; splice_chain ",61573755-61573877^";
chr17	juncbase	jcn_only_AA	57756905	57784732	.	-	.	gene_id "jcn_only_AA.361"; transcript_id "jcn_only_AA.361"; gene_name "CUFF.1939"; flanks "57756905-,57784732^"; structure "1-,2-"; splice_chain "57775339-,57756905-";
chr17	juncbase	jcn_only_AA	57777237	57784732	.	-	.	gene_id "jcn_only_AA.362"; transcript_id "jcn_only_AA.362"; gene_name "CUFF.1939"; flanks "57777237-,57784732^"; structure "1-,2-"; splice_chain "57777237-,57775339-";
chr17	juncbase	jcn_only_AA	57777550	57784732	.	-	.	gene_id "jcn_only_AA.363"; transcript_id "jcn_only_AA.363"; gene_name "CUFF.1939"; flanks "57777550-,57784732^"; structure "1-,2-"; splice_chain "57777550-,57775339-";
chr17	juncbase	jcn_only_AD	66287227	66279264	.	-	.	gene_id "jcn_only_AD.342"; transcript_id "jcn_only_AD.342"; gene_name "CUFF.1953"; flanks "66287227-,66279264^"; structure "1^,2^"; splice_chain "66287227^,66281686^";
chr17	juncbase	intron_retention	35378313	35388911	.	+	.	gene_id "intron_retention.322"; transcript_id "intron_retention.322"; gene_name ""; flanks "35378313-,35388911^"; structure "0,1^2-"; splice_chain ",35378313^35388911-";
chr17	juncbase	jcn_only_AD	56084305	56083888	.	-	.	gene_id "jcn_only_AD.343"; transcript_id "jcn_only_AD.343"; gene_name "CUFF.1936"; flanks "56084305-,56083888^"; structure "1^,2^"; splice_chain "56084305^,56084268^";
chr17	juncbase	alternative_donor	57784732	57775339	.	-	.	gene_id "alternative_donor.232"; transcript_id "alternative_donor.232"; gene_name ""; flanks "57784732-,57775339^"; structure "1^,2^"; splice_chain "57784732^,57776232^";
chr17	juncbase	alternative_donor	79995490	79994889	.	-	.	gene_id "alternative_donor.233"; transcript_id "alternative_donor.233"; gene_name "CUFF.1975"; flanks "79995490-,79994889^"; structure "1^,2^"; splice_chain "79995507^,79995490^";
chr17	juncbase	alternative_donor	79995326	79994889	.	-	.	gene_id "alternative_donor.234"; transcript_id "alternative_donor.234"; gene_name "CUFF.1975"; flanks "79995326-,79994889^"; structure "1^,2^"; splice_chain "79995507^,79995326^";
chr17	juncbase	intron_retention	25969374	25970551	.	+	.	gene_id "intron_retention.323"; transcript_id "intron_retention.323"; gene_name ""; flanks "25969374-,25970551^"; structure "0,1^2-"; splice_chain ",25969374^25970551-";
chr17	juncbase	intron_retention	79995490	79994889	.	-	.	gene_id "intron_retention.324"; transcript_id "intron_retention.324"; gene_name ""; flanks "79995490-,79994889^"; structure "0,1^2-"; splice_chain ",79995490^79994889-";
chr17	juncbase	intron_retention	41739239	41738761	.	-	.	gene_id "intron_retention.325"; transcript_id "intron_retention.325"; gene_name "CUFF.1926"; flanks "41739239-,41738761^"; structure "0,1^2-"; splice_chain ",41739239^41738761-";
chr17	juncbase	jcn_only_AA	79220040	79220685	.	-	.	gene_id "jcn_only_AA.364"; transcript_id "jcn_only_AA.364"; gene_name "CUFF.1964"; flanks "79220040-,79220685^"; structure "1-,2-"; splice_chain "79220473-,79220040-";
chr17	juncbase	alternative_acceptor	15584267	15586168	.	-	.	gene_id "alternative_acceptor.254"; transcript_id "alternative_acceptor.254"; gene_name ""; flanks "15584267-,15586168^"; structure "1-,2-"; splice_chain "15584536-,15584267-";
chr17	juncbase	cassette	29677336	29683478	.	+	.	gene_id "cassette.216"; transcript_id "cassette.216"; gene_name "CUFF.1912"; flanks "29677336-,29683478^"; structure "0,1-2^"; splice_chain ",29679275-29679432^";
chr17	juncbase	cassette	80417948	80426640	.	+	.	gene_id "cassette.217"; transcript_id "cassette.217"; gene_name "CUFF.1977"; flanks "80417948-,80426640^"; structure "0,1-2^"; splice_chain ",80422163-80422306^";
chr17	juncbase	jcn_only_AA	6353392	6353682	.	+	.	gene_id "jcn_only_AA.365"; transcript_id "jcn_only_AA.365"; gene_name "CUFF.1890"; flanks "6353392-,6353682^"; structure "1-,2-"; splice_chain "6353559-,6353682-";
chr17	juncbase	jcn_only_AD	1617150	1616349	.	-	.	gene_id "jcn_only_AD.344"; transcript_id "jcn_only_AD.344"; gene_name "CUFF.1878"; flanks "1617150-,1616349^"; structure "1^,2^"; splice_chain "1617150^,1616997^";
chr17	juncbase	alternative_donor	79478929	79478652	.	-	.	gene_id "alternative_donor.235"; transcript_id "alternative_donor.235"; gene_name "CUFF.1968"; flanks "79478929-,79478652^"; structure "1^,2^"; splice_chain "79478929^,79478789^";
chr17	juncbase	alternative_donor	79900172	79894069	.	-	.	gene_id "alternative_donor.236"; transcript_id "alternative_donor.236"; gene_name "CUFF.1972"; flanks "79900172-,79894069^"; structure "1^,2^"; splice_chain "79900172^,79898626^";
chr17	juncbase	alternative_donor	79894624	79894069	.	-	.	gene_id "alternative_donor.237"; transcript_id "alternative_donor.237"; gene_name "CUFF.1972"; flanks "79894624-,79894069^"; structure "1^,2^"; splice_chain "79898626^,79894624^";
chr17	juncbase	intron_retention	1945169	1945899	.	+	.	gene_id "intron_retention.326"; transcript_id "intron_retention.326"; gene_name ""; flanks "1945169-,1945899^"; structure "0,1^2-"; splice_chain ",1945169^1945899-";
chr17	juncbase	intron_retention	79995326	79994889	.	-	.	gene_id "intron_retention.327"; transcript_id "intron_retention.327"; gene_name ""; flanks "79995326-,79994889^"; structure "0,1^2-"; splice_chain ",79995326^79994889-";
chr17	juncbase	alternative_donor	66524041	66525011	.	+	.	gene_id "alternative_donor.238"; transcript_id "alternative_donor.238"; gene_name "CUFF.1954"; flanks "66524041-,66525011^"; structure "1^,2^"; splice_chain "66524041^,66524860^";
chr17	juncbase	alternative_donor	1617150	1615693	.	-	.	gene_id "alternative_donor.239"; transcript_id "alternative_donor.239"; gene_name ""; flanks "1617150-,1615693^"; structure "1^,2^"; splice_chain "1617150^,1616997^";
chr17	juncbase	alternative_acceptor	5425106	5433801	.	-	.	gene_id "alternative_acceptor.255"; transcript_id "alternative_acceptor.255"; gene_name "CUFF.1889"; flanks "5425106-,5433801^"; structure "1-,2-"; splice_chain "5433378-,5425106-";
chr17	juncbase	jcn_only_AD	29667601	29670027	.	+	.	gene_id "jcn_only_AD.345"; transcript_id "jcn_only_AD.345"; gene_name "CUFF.1912"; flanks "29667601-,29670027^"; structure "1^,2^"; splice_chain "29667601^,29667663^";
chr17	juncbase	intron_retention	79994965	79994757	.	-	.	gene_id "intron_retention.328"; transcript_id "intron_retention.328"; gene_name ""; flanks "79994965-,79994757^"; structure "0,1^2-"; splice_chain ",79994965^79994757-";
chr17	juncbase	cassette	80441655	80443373	.	+	.	gene_id "cassette.218"; transcript_id "cassette.218"; gene_name "CUFF.1977"; flanks "80441655-,80443373^"; structure "0,1-2^"; splice_chain ",80442689-80442826^";
chr17	juncbase	alternative_donor	79995507	79994889	.	-	.	gene_id "alternative_donor.240"; transcript_id "alternative_donor.240"; gene_name "CUFF.1975"; flanks "79995507-,79994889^"; structure "1^,2^"; splice_chain "79995507^,79995490^";
chr17	juncbase	alternative_donor	79995326	79994889	.	-	.	gene_id "alternative_donor.241"; transcript_id "alternative_donor.241"; gene_name "CUFF.1975"; flanks "79995326-,79994889^"; structure "1^,2^"; splice_chain "79995490^,79995326^";
chr17	juncbase	intron_retention	80441618	80446078	.	+	.	gene_id "intron_retention.329"; transcript_id "intron_retention.329"; gene_name ""; flanks "80441618-,80446078^"; structure "0,1^2-"; splice_chain ",80441618^80446078-";
chr17	juncbase	jcn_only_AD	79895404	79894737	.	-	.	gene_id "jcn_only_AD.346"; transcript_id "jcn_only_AD.346"; gene_name "CUFF.1972"; flanks "79895404-,79894737^"; structure "1^,2^"; splice_chain "79895404^,79895138^";
chr17	juncbase	jcn_only_AD	79895134	79894737	.	-	.	gene_id "jcn_only_AD.347"; transcript_id "jcn_only_AD.347"; gene_name "CUFF.1972"; flanks "79895134-,79894737^"; structure "1^,2^"; splice_chain "79895138^,79895134^";
chr17	juncbase	jcn_only_AD	79895056	79894737	.	-	.	gene_id "jcn_only_AD.348"; transcript_id "jcn_only_AD.348"; gene_name "CUFF.1972"; flanks "79895056-,79894737^"; structure "1^,2^"; splice_chain "79895138^,79895056^";
chr17	juncbase	jcn_only_AD	79895069	79894737	.	-	.	gene_id "jcn_only_AD.349"; transcript_id "jcn_only_AD.349"; gene_name "CUFF.1972"; flanks "79895069-,79894737^"; structure "1^,2^"; splice_chain "79895138^,79895069^";
chr17	juncbase	jcn_only_AD	79894846	79894737	.	-	.	gene_id "jcn_only_AD.350"; transcript_id "jcn_only_AD.350"; gene_name "CUFF.1972"; flanks "79894846-,79894737^"; structure "1^,2^"; splice_chain "79895138^,79894846^";
chr17	juncbase	jcn_only_AD	79895104	79894737	.	-	.	gene_id "jcn_only_AD.351"; transcript_id "jcn_only_AD.351"; gene_name "CUFF.1972"; flanks "79895104-,79894737^"; structure "1^,2^"; splice_chain "79895138^,79895104^";
chr17	juncbase	alternative_donor	79479490	79479386	.	-	.	gene_id "alternative_donor.242"; transcript_id "alternative_donor.242"; gene_name "CUFF.1968"; flanks "79479490-,79479386^"; structure "1^,2^"; splice_chain "79481573^,79479490^";
chr17	juncbase	alternative_donor	79490668	79479386	.	-	.	gene_id "alternative_donor.243"; transcript_id "alternative_donor.243"; gene_name "CUFF.1968"; flanks "79490668-,79479386^"; structure "1^,2^"; splice_chain "79490668^,79481573^";
chr17	juncbase	alternative_donor	79479760	79479386	.	-	.	gene_id "alternative_donor.244"; transcript_id "alternative_donor.244"; gene_name "CUFF.1968"; flanks "79479760-,79479386^"; structure "1^,2^"; splice_chain "79481573^,79479760^";
chr17	juncbase	alternative_donor	79479641	79479386	.	-	.	gene_id "alternative_donor.245"; transcript_id "alternative_donor.245"; gene_name "CUFF.1968"; flanks "79479641-,79479386^"; structure "1^,2^"; splice_chain "79481573^,79479641^";
chr17	juncbase	alternative_donor	79479632	79479386	.	-	.	gene_id "alternative_donor.246"; transcript_id "alternative_donor.246"; gene_name "CUFF.1968"; flanks "79479632-,79479386^"; structure "1^,2^"; splice_chain "79481573^,79479632^";
chr17	juncbase	jcn_only_AA	57756905	57784732	.	-	.	gene_id "jcn_only_AA.366"; transcript_id "jcn_only_AA.366"; gene_name "CUFF.1939"; flanks "57756905-,57784732^"; structure "1-,2-"; splice_chain "57777550-,57756905-";
chr17	juncbase	jcn_only_AA	57775339	57784732	.	-	.	gene_id "jcn_only_AA.367"; transcript_id "jcn_only_AA.367"; gene_name "CUFF.1939"; flanks "57775339-,57784732^"; structure "1-,2-"; splice_chain "57777550-,57775339-";
chr17	juncbase	jcn_only_AA	57777237	57784732	.	-	.	gene_id "jcn_only_AA.368"; transcript_id "jcn_only_AA.368"; gene_name "CUFF.1939"; flanks "57777237-,57784732^"; structure "1-,2-"; splice_chain "57777550-,57777237-";
chr17	juncbase	alternative_acceptor	80436794	80437814	.	+	.	gene_id "alternative_acceptor.256"; transcript_id "alternative_acceptor.256"; gene_name "CUFF.1977"; flanks "80436794-,80437814^"; structure "1-,2-"; splice_chain "80437814-,80438283-";
chr17	juncbase	alternative_acceptor	80436794	80438958	.	+	.	gene_id "alternative_acceptor.257"; transcript_id "alternative_acceptor.257"; gene_name "CUFF.1977"; flanks "80436794-,80438958^"; structure "1-,2-"; splice_chain "80438283-,80438958-";
chr17	juncbase	intron_retention	1940250	1943049	.	+	.	gene_id "intron_retention.330"; transcript_id "intron_retention.330"; gene_name "CUFF.1881"; flanks "1940250-,1943049^"; structure "0,1^2-"; splice_chain ",1940250^1943049-";
chr17	juncbase	jcn_only_AA	15584536	15586350	.	-	.	gene_id "jcn_only_AA.369"; transcript_id "jcn_only_AA.369"; gene_name "CUFF.1898"; flanks "15584536-,15586350^"; structure "1-,2-"; splice_chain "15586278-,15584536-";
chr17	juncbase	jcn_only_AA	15586265	15586350	.	-	.	gene_id "jcn_only_AA.370"; transcript_id "jcn_only_AA.370"; gene_name "CUFF.1898"; flanks "15586265-,15586350^"; structure "1-,2-"; splice_chain "15586278-,15586265-";
chr17	juncbase	jcn_only_AA	15584267	15586350	.	-	.	gene_id "jcn_only_AA.371"; transcript_id "jcn_only_AA.371"; gene_name "CUFF.1898"; flanks "15584267-,15586350^"; structure "1-,2-"; splice_chain "15586278-,15584267-";
chr17	juncbase	jcn_only_AA	79223893	79225293	.	-	.	gene_id "jcn_only_AA.372"; transcript_id "jcn_only_AA.372"; gene_name "CUFF.1964"; flanks "79223893-,79225293^"; structure "1-,2-"; splice_chain "79223893-,79220858-";
chr17	juncbase	jcn_only_AA	79220861	79225293	.	-	.	gene_id "jcn_only_AA.373"; transcript_id "jcn_only_AA.373"; gene_name "CUFF.1964"; flanks "79220861-,79225293^"; structure "1-,2-"; splice_chain "79220861-,79220858-";
chr17	juncbase	alternative_donor	75543174	75557027	.	+	.	gene_id "alternative_donor.247"; transcript_id "alternative_donor.247"; gene_name "CUFF.1958"; flanks "75543174-,75557027^"; structure "1^,2^"; splice_chain "75543174^,75556925^";
chr17	juncbase	jcn_only_AA	1945169	1946270	.	+	.	gene_id "jcn_only_AA.374"; transcript_id "jcn_only_AA.374"; gene_name "CUFF.1977"; flanks "1945169-,1946270^"; structure "1-,2-"; splice_chain "1945899-,1946270-";
chr17	juncbase	alternative_acceptor	1945169	1946270	.	+	.	gene_id "alternative_acceptor.258"; transcript_id "alternative_acceptor.258"; gene_name "CUFF.1977"; flanks "1945169-,1946270^"; structure "1-,2-"; splice_chain "1945899-,1946270-";
chr17	juncbase	cassette	79358929	79354384	.	-	.	gene_id "cassette.219"; transcript_id "cassette.219"; gene_name "CUFF.1967"; flanks "79358929-,79354384^"; structure "0,1-2^"; splice_chain ",79358832-79358746^";
chr17	juncbase	cassette	79358929	79355740	.	-	.	gene_id "cassette.220"; transcript_id "cassette.220"; gene_name "CUFF.1967"; flanks "79358929-,79355740^"; structure "0,1-2^"; splice_chain ",79358832-79358746^";
chr17	juncbase	cassette	77005746	76993726	.	-	.	gene_id "cassette.221"; transcript_id "cassette.221"; gene_name "CUFF.1960"; flanks "77005746-,76993726^"; structure "0,1-2^"; splice_chain ",76994045-76993922^";
chr17	juncbase	cassette	47304009	47302493	.	-	.	gene_id "cassette.222"; transcript_id "cassette.222"; gene_name "CUFF.1932"; flanks "47304009-,47302493^"; structure "0,1-2^"; splice_chain ",47303139-47303018^";
chr17	juncbase	alternative_acceptor	57756905	57784732	.	-	.	gene_id "alternative_acceptor.259"; transcript_id "alternative_acceptor.259"; gene_name "CUFF.1939"; flanks "57756905-,57784732^"; structure "1-,2-"; splice_chain "57777237-,57756905-";
chr17	juncbase	alternative_acceptor	57775339	57784732	.	-	.	gene_id "alternative_acceptor.260"; transcript_id "alternative_acceptor.260"; gene_name "CUFF.1939"; flanks "57775339-,57784732^"; structure "1-,2-"; splice_chain "57777237-,57775339-";
chr17	juncbase	alternative_acceptor	57777550	57784732	.	-	.	gene_id "alternative_acceptor.261"; transcript_id "alternative_acceptor.261"; gene_name "CUFF.1939"; flanks "57777550-,57784732^"; structure "1-,2-"; splice_chain "57777550-,57777237-";
chr17	juncbase	alternative_acceptor	1616219	1616997	.	-	.	gene_id "alternative_acceptor.262"; transcript_id "alternative_acceptor.262"; gene_name "CUFF.1878"; flanks "1616219-,1616997^"; structure "1-,2-"; splice_chain "1616219-,1615693-";
chr17	juncbase	alternative_acceptor	1616189	1616997	.	-	.	gene_id "alternative_acceptor.263"; transcript_id "alternative_acceptor.263"; gene_name "CUFF.1878"; flanks "1616189-,1616997^"; structure "1-,2-"; splice_chain "1616189-,1615693-";
chr17	juncbase	alternative_acceptor	1616349	1616997	.	-	.	gene_id "alternative_acceptor.264"; transcript_id "alternative_acceptor.264"; gene_name "CUFF.1878"; flanks "1616349-,1616997^"; structure "1-,2-"; splice_chain "1616349-,1615693-";
chr17	juncbase	alternative_acceptor	1616198	1616997	.	-	.	gene_id "alternative_acceptor.265"; transcript_id "alternative_acceptor.265"; gene_name "CUFF.1878"; flanks "1616198-,1616997^"; structure "1-,2-"; splice_chain "1616198-,1615693-";
chr17	juncbase	cassette	79892802	79892365	.	-	.	gene_id "cassette.223"; transcript_id "cassette.223"; gene_name "CUFF.1972"; flanks "79892802-,79892365^"; structure "0,1-2^"; splice_chain ",79892621-79892529^";
chr17	juncbase	cassette	79892802	79891252	.	-	.	gene_id "cassette.224"; transcript_id "cassette.224"; gene_name "CUFF.1972"; flanks "79892802-,79891252^"; structure "0,1-2^"; splice_chain ",79892621-79892529^";
chr17	juncbase	alternative_acceptor	56081079	56082284	.	-	.	gene_id "alternative_acceptor.266"; transcript_id "alternative_acceptor.266"; gene_name "CUFF.1936"; flanks "56081079-,56082284^"; structure "1-,2-"; splice_chain "56081362-,56081079-";
chr17	juncbase	jcn_only_AA	33640725	33648756	.	+	.	gene_id "jcn_only_AA.375"; transcript_id "jcn_only_AA.375"; gene_name "CUFF.1917"; flanks "33640725-,33648756^"; structure "1-,2-"; splice_chain "33648754-,33648756-";
chr17	juncbase	alternative_acceptor	80436794	80438283	.	+	.	gene_id "alternative_acceptor.267"; transcript_id "alternative_acceptor.267"; gene_name "CUFF.1977"; flanks "80436794-,80438283^"; structure "1-,2-"; splice_chain "80437814-,80438283-";
chr17	juncbase	alternative_acceptor	80436794	80438958	.	+	.	gene_id "alternative_acceptor.268"; transcript_id "alternative_acceptor.268"; gene_name "CUFF.1977"; flanks "80436794-,80438958^"; structure "1-,2-"; splice_chain "80437814-,80438958-";
chr17	juncbase	jcn_only_AD	61568729	61571283	.	+	.	gene_id "jcn_only_AD.352"; transcript_id "jcn_only_AD.352"; gene_name "CUFF.1942"; flanks "61568729-,61571283^"; structure "1^,2^"; splice_chain "61568729^,61571020^";
chr17	juncbase	jcn_only_AD	61567389	61571283	.	+	.	gene_id "jcn_only_AD.353"; transcript_id "jcn_only_AD.353"; gene_name "CUFF.1942"; flanks "61567389-,61571283^"; structure "1^,2^"; splice_chain "61567389^,61571020^";
chr17	juncbase	intron_retention	1939947	1940129	.	+	.	gene_id "intron_retention.331"; transcript_id "intron_retention.331"; gene_name ""; flanks "1939947-,1940129^"; structure "0,1^2-"; splice_chain ",1939947^1940129-";
chr17	juncbase	intron_retention	80438420	80438958	.	+	.	gene_id "intron_retention.332"; transcript_id "intron_retention.332"; gene_name ""; flanks "80438420-,80438958^"; structure "0,1^2-"; splice_chain ",80438420^80438958-";
chr17	juncbase	cassette	17380579	17394593	.	+	.	gene_id "cassette.225"; transcript_id "cassette.225"; gene_name "CUFF.1902"; flanks "17380579-,17394593^"; structure "0,1-2^"; splice_chain ",17388614-17388747^";
chr17	juncbase	alternative_acceptor	57756905	57784732	.	-	.	gene_id "alternative_acceptor.269"; transcript_id "alternative_acceptor.269"; gene_name "CUFF.1939"; flanks "57756905-,57784732^"; structure "1-,2-"; splice_chain "57777550-,57756905-";
chr17	juncbase	alternative_acceptor	57775339	57784732	.	-	.	gene_id "alternative_acceptor.270"; transcript_id "alternative_acceptor.270"; gene_name "CUFF.1939"; flanks "57775339-,57784732^"; structure "1-,2-"; splice_chain "57777550-,57775339-";
chr17	juncbase	alternative_acceptor	57777237	57784732	.	-	.	gene_id "alternative_acceptor.271"; transcript_id "alternative_acceptor.271"; gene_name "CUFF.1939"; flanks "57777237-,57784732^"; structure "1-,2-"; splice_chain "57777550-,57777237-";
chr17	juncbase	cassette	29576137	29584705	.	+	.	gene_id "cassette.226"; transcript_id "cassette.226"; gene_name "CUFF.1912"; flanks "29576137-,29584705^"; structure "0,1-2^"; splice_chain ",29579956-29580018^";
chr17	juncbase	jcn_only_AA	15580996	15584179	.	-	.	gene_id "jcn_only_AA.376"; transcript_id "jcn_only_AA.376"; gene_name "CUFF.1898"; flanks "15580996-,15584179^"; structure "1-,2-"; splice_chain "15580996-,15557745-";
chr17	juncbase	jcn_only_AA	15581035	15584179	.	-	.	gene_id "jcn_only_AA.377"; transcript_id "jcn_only_AA.377"; gene_name "CUFF.1898"; flanks "15581035-,15584179^"; structure "1-,2-"; splice_chain "15581035-,15557745-";
chr17	juncbase	jcn_only_AA	15580594	15584179	.	-	.	gene_id "jcn_only_AA.378"; transcript_id "jcn_only_AA.378"; gene_name "CUFF.1898"; flanks "15580594-,15584179^"; structure "1-,2-"; splice_chain "15580594-,15557745-";
chr17	juncbase	jcn_only_AA	15562190	15584179	.	-	.	gene_id "jcn_only_AA.379"; transcript_id "jcn_only_AA.379"; gene_name "CUFF.1898"; flanks "15562190-,15584179^"; structure "1-,2-"; splice_chain "15562190-,15557745-";
chr17	juncbase	jcn_only_AA	15546130	15584179	.	-	.	gene_id "jcn_only_AA.380"; transcript_id "jcn_only_AA.380"; gene_name "CUFF.1898"; flanks "15546130-,15584179^"; structure "1-,2-"; splice_chain "15557745-,15546130-";
chr17	juncbase	jcn_only_AD	80417948	80422163	.	+	.	gene_id "jcn_only_AD.354"; transcript_id "jcn_only_AD.354"; gene_name "CUFF.1977"; flanks "80417948-,80422163^"; structure "1^,2^"; splice_chain "80417948^,80418199^";
chr17	juncbase	cassette	46988242	46993438	.	+	.	gene_id "cassette.227"; transcript_id "cassette.227"; gene_name "CUFF.1930"; flanks "46988242-,46993438^"; structure "0,1-2^"; splice_chain ",46990196-46990327^";
chr17	juncbase	alternative_donor	77005746	77001563	.	-	.	gene_id "alternative_donor.248"; transcript_id "alternative_donor.248"; gene_name "CUFF.1960"; flanks "77005746-,77001563^"; structure "1^,2^"; splice_chain "77005746^,77004145^";
chr17	juncbase	cassette	60783830	60813447	.	+	.	gene_id "cassette.228"; transcript_id "cassette.228"; gene_name "CUFF.1941"; flanks "60783830-,60813447^"; structure "0,1-2^"; splice_chain ",60784793-60784968^";
chr17	juncbase	intron_retention	79479641	79479386	.	-	.	gene_id "intron_retention.333"; transcript_id "intron_retention.333"; gene_name ""; flanks "79479641-,79479386^"; structure "0,1^2-"; splice_chain ",79479641^79479386-";
chr17	juncbase	alternative_acceptor	61908295	61908396	.	+	.	gene_id "alternative_acceptor.272"; transcript_id "alternative_acceptor.272"; gene_name "CUFF.1944"; flanks "61908295-,61908396^"; structure "1-,2-"; splice_chain "61908380-,61908396-";
chr17	juncbase	intron_retention	61904566	61904778	.	+	.	gene_id "intron_retention.334"; transcript_id "intron_retention.334"; gene_name "CUFF.1944"; flanks "61904566-,61904778^"; structure "0,1^2-"; splice_chain ",61904566^61904778-";
chr17	juncbase	alternative_donor	6348724	6350783	.	+	.	gene_id "alternative_donor.249"; transcript_id "alternative_donor.249"; gene_name "CUFF.1890"; flanks "6348724-,6350783^"; structure "1^,2^"; splice_chain "6348724^,6349507^";
chr17	juncbase	alternative_donor	6348662	6350783	.	+	.	gene_id "alternative_donor.250"; transcript_id "alternative_donor.250"; gene_name "CUFF.1890"; flanks "6348662-,6350783^"; structure "1^,2^"; splice_chain "6348662^,6349507^";
chr17	juncbase	intron_retention	29684387	29685498	.	+	.	gene_id "intron_retention.335"; transcript_id "intron_retention.335"; gene_name "CUFF.1912"; flanks "29684387-,29685498^"; structure "0,1^2-"; splice_chain ",29684387^29685498-";
chr17	juncbase	cassette	79358929	79354384	.	-	.	gene_id "cassette.229"; transcript_id "cassette.229"; gene_name "CUFF.1967"; flanks "79358929-,79354384^"; structure "0,1-2^"; splice_chain ",79355740-79355677^";
chr17	juncbase	cassette	79358746	79354384	.	-	.	gene_id "cassette.230"; transcript_id "cassette.230"; gene_name "CUFF.1967"; flanks "79358746-,79354384^"; structure "0,1-2^"; splice_chain ",79355740-79355677^";
chr17	juncbase	alternative_acceptor	61904874	61905034	.	+	.	gene_id "alternative_acceptor.273"; transcript_id "alternative_acceptor.273"; gene_name "CUFF.1944"; flanks "61904874-,61905034^"; structure "1-,2-"; splice_chain "61905034-,61905189-";
chr17	juncbase	alternative_acceptor	61904874	61905211	.	+	.	gene_id "alternative_acceptor.274"; transcript_id "alternative_acceptor.274"; gene_name "CUFF.1944"; flanks "61904874-,61905211^"; structure "1-,2-"; splice_chain "61905189-,61905211-";
chr17	juncbase	alternative_acceptor	61904874	61905479	.	+	.	gene_id "alternative_acceptor.275"; transcript_id "alternative_acceptor.275"; gene_name "CUFF.1944"; flanks "61904874-,61905479^"; structure "1-,2-"; splice_chain "61905189-,61905479-";
chr17	juncbase	alternative_acceptor	61904874	61905498	.	+	.	gene_id "alternative_acceptor.276"; transcript_id "alternative_acceptor.276"; gene_name "CUFF.1944"; flanks "61904874-,61905498^"; structure "1-,2-"; splice_chain "61905189-,61905498-";
chr17	juncbase	jcn_only_AD	29706041	29708891	.	+	.	gene_id "jcn_only_AD.355"; transcript_id "jcn_only_AD.355"; gene_name ""; flanks "29706041-,29708891^"; structure "1^,2^"; splice_chain "29706041^,29706375^";
chr17	juncbase	jcn_only_AD	29707245	29708891	.	+	.	gene_id "jcn_only_AD.356"; transcript_id "jcn_only_AD.356"; gene_name ""; flanks "29707245-,29708891^"; structure "1^,2^"; splice_chain "29706375^,29707245^";
chr17	juncbase	cassette	46988242	46993438	.	+	.	gene_id "cassette.231"; transcript_id "cassette.231"; gene_name "CUFF.1930"; flanks "46988242-,46993438^"; structure "0,1-2^"; splice_chain ",46990196-46990383^";
chr17	juncbase	jcn_only_AA	61905283	61905498	.	+	.	gene_id "jcn_only_AA.381"; transcript_id "jcn_only_AA.381"; gene_name ""; flanks "61905283-,61905498^"; structure "1-,2-"; splice_chain "61905479-,61905498-";
chr17	juncbase	intron_retention	1617150	1616349	.	-	.	gene_id "intron_retention.336"; transcript_id "intron_retention.336"; gene_name "CUFF.1878"; flanks "1617150-,1616349^"; structure "0,1^2-"; splice_chain ",1617150^1616349-";
chr17	juncbase	alternative_donor	79994290	79994184	.	-	.	gene_id "alternative_donor.251"; transcript_id "alternative_donor.251"; gene_name ""; flanks "79994290-,79994184^"; structure "1^,2^"; splice_chain "79994290^,79994260^";
chr17	juncbase	alternative_donor	6349507	6350783	.	+	.	gene_id "alternative_donor.252"; transcript_id "alternative_donor.252"; gene_name "CUFF.1890"; flanks "6349507-,6350783^"; structure "1^,2^"; splice_chain "6348662^,6349507^";
chr17	juncbase	alternative_donor	6348724	6350783	.	+	.	gene_id "alternative_donor.253"; transcript_id "alternative_donor.253"; gene_name "CUFF.1890"; flanks "6348724-,6350783^"; structure "1^,2^"; splice_chain "6348662^,6348724^";
chr17	juncbase	intron_retention	35378313	35413901	.	+	.	gene_id "intron_retention.337"; transcript_id "intron_retention.337"; gene_name ""; flanks "35378313-,35413901^"; structure "0,1^2-"; splice_chain ",35378313^35413901-";
chr17	juncbase	intron_retention	650785	650522	.	-	.	gene_id "intron_retention.338"; transcript_id "intron_retention.338"; gene_name "CUFF.1875"; flanks "650785-,650522^"; structure "0,1^2-"; splice_chain ",650785^650522-";
chr17	juncbase	jcn_only_AA	15580996	15584179	.	-	.	gene_id "jcn_only_AA.382"; transcript_id "jcn_only_AA.382"; gene_name "CUFF.1898"; flanks "15580996-,15584179^"; structure "1-,2-"; splice_chain "15580996-,15546130-";
chr17	juncbase	jcn_only_AA	15581035	15584179	.	-	.	gene_id "jcn_only_AA.383"; transcript_id "jcn_only_AA.383"; gene_name "CUFF.1898"; flanks "15581035-,15584179^"; structure "1-,2-"; splice_chain "15581035-,15546130-";
chr17	juncbase	jcn_only_AA	15580594	15584179	.	-	.	gene_id "jcn_only_AA.384"; transcript_id "jcn_only_AA.384"; gene_name "CUFF.1898"; flanks "15580594-,15584179^"; structure "1-,2-"; splice_chain "15580594-,15546130-";
chr17	juncbase	jcn_only_AA	15562190	15584179	.	-	.	gene_id "jcn_only_AA.385"; transcript_id "jcn_only_AA.385"; gene_name "CUFF.1898"; flanks "15562190-,15584179^"; structure "1-,2-"; splice_chain "15562190-,15546130-";
chr17	juncbase	jcn_only_AA	15557745	15584179	.	-	.	gene_id "jcn_only_AA.386"; transcript_id "jcn_only_AA.386"; gene_name "CUFF.1898"; flanks "15557745-,15584179^"; structure "1-,2-"; splice_chain "15557745-,15546130-";
chr17	juncbase	intron_retention	1616997	1616349	.	-	.	gene_id "intron_retention.339"; transcript_id "intron_retention.339"; gene_name "CUFF.1878"; flanks "1616997-,1616349^"; structure "0,1^2-"; splice_chain ",1616997^1616349-";
chr17	juncbase	intron_retention	80441655	80442689	.	+	.	gene_id "intron_retention.340"; transcript_id "intron_retention.340"; gene_name ""; flanks "80441655-,80442689^"; structure "0,1^2-"; splice_chain ",80441655^80442689-";
chr17	juncbase	jcn_only_AD	15586350	15584267	.	-	.	gene_id "jcn_only_AD.357"; transcript_id "jcn_only_AD.357"; gene_name "CUFF.1898"; flanks "15586350-,15584267^"; structure "1^,2^"; splice_chain "15586350^,15584365^";
chr17	juncbase	jcn_only_AD	15586175	15584267	.	-	.	gene_id "jcn_only_AD.358"; transcript_id "jcn_only_AD.358"; gene_name "CUFF.1898"; flanks "15586175-,15584267^"; structure "1^,2^"; splice_chain "15586175^,15584365^";
chr17	juncbase	jcn_only_AD	15586168	15584267	.	-	.	gene_id "jcn_only_AD.359"; transcript_id "jcn_only_AD.359"; gene_name "CUFF.1898"; flanks "15586168-,15584267^"; structure "1^,2^"; splice_chain "15586168^,15584365^";
chr17	juncbase	intron_retention	46990327	46993438	.	+	.	gene_id "intron_retention.341"; transcript_id "intron_retention.341"; gene_name "CUFF.1930"; flanks "46990327-,46993438^"; structure "0,1^2-"; splice_chain ",46990327^46993438-";
chr17	juncbase	jcn_only_AD	15586350	15584536	.	-	.	gene_id "jcn_only_AD.360"; transcript_id "jcn_only_AD.360"; gene_name "CUFF.1929"; flanks "15586350-,15584536^"; structure "1^,2^"; splice_chain "15586350^,15586168^";
chr17	juncbase	cassette	61566152	61568315	.	+	.	gene_id "cassette.232"; transcript_id "cassette.232"; gene_name "CUFF.1942"; flanks "61566152-,61568315^"; structure "0,1-2^"; splice_chain ",61566302-61566493^";
chr17	juncbase	alternative_donor	1945169	1945899	.	+	.	gene_id "alternative_donor.254"; transcript_id "alternative_donor.254"; gene_name "CUFF.1881"; flanks "1945169-,1945899^"; structure "1^,2^"; splice_chain "1945169^,1945525^";
chr17	juncbase	intron_retention	61904883	61907493	.	+	.	gene_id "intron_retention.342"; transcript_id "intron_retention.342"; gene_name "CUFF.1944"; flanks "61904883-,61907493^"; structure "0,1^2-"; splice_chain ",61904883^61907493-";
chr17	juncbase	intron_retention	76988492	76988222	.	-	.	gene_id "intron_retention.343"; transcript_id "intron_retention.343"; gene_name ""; flanks "76988492-,76988222^"; structure "0,1^2-"; splice_chain ",76988492^76988222-";
chr17	juncbase	jcn_only_AD	1939947	1940129	.	+	.	gene_id "jcn_only_AD.361"; transcript_id "jcn_only_AD.361"; gene_name "CUFF.1881"; flanks "1939947-,1940129^"; structure "1^,2^"; splice_chain "1939947^,1939980^";
chr17	juncbase	intron_retention	61904972	61906218	.	+	.	gene_id "intron_retention.344"; transcript_id "intron_retention.344"; gene_name ""; flanks "61904972-,61906218^"; structure "0,1^2-"; splice_chain ",61904972^61906218-";
chr17	juncbase	intron_retention	29686033	29687505	.	+	.	gene_id "intron_retention.345"; transcript_id "intron_retention.345"; gene_name "CUFF.1912"; flanks "29686033-,29687505^"; structure "0,1^2-"; splice_chain ",29686033^29687505-";
chr17	juncbase	intron_retention	25972375	25972887	.	+	.	gene_id "intron_retention.346"; transcript_id "intron_retention.346"; gene_name "CUFF.1908"; flanks "25972375-,25972887^"; structure "0,1^2-"; splice_chain ",25972375^25972887-";
chr17	juncbase	alternative_acceptor	61564434	61566009	.	+	.	gene_id "alternative_acceptor.277"; transcript_id "alternative_acceptor.277"; gene_name "CUFF.1942,CUFF.1977"; flanks "61564434-,61566009^"; structure "1-,2-"; splice_chain "61565931-,61566009-";
chr17	juncbase	alternative_donor	1939947	1940129	.	+	.	gene_id "alternative_donor.255"; transcript_id "alternative_donor.255"; gene_name "CUFF.1881"; flanks "1939947-,1940129^"; structure "1^,2^"; splice_chain "1939947^,1939980^";
chr17	juncbase	intron_retention	76993922	76993726	.	-	.	gene_id "intron_retention.347"; transcript_id "intron_retention.347"; gene_name ""; flanks "76993922-,76993726^"; structure "0,1^2-"; splice_chain ",76993922^76993726-";
chr17	juncbase	alternative_donor	79898626	79894069	.	-	.	gene_id "alternative_donor.256"; transcript_id "alternative_donor.256"; gene_name ""; flanks "79898626-,79894069^"; structure "1^,2^"; splice_chain "79898626^,79894624^";
chr17	juncbase	alternative_donor	79900172	79894069	.	-	.	gene_id "alternative_donor.257"; transcript_id "alternative_donor.257"; gene_name ""; flanks "79900172-,79894069^"; structure "1^,2^"; splice_chain "79900172^,79894624^";
chr17	juncbase	alternative_acceptor	6348724	6350783	.	+	.	gene_id "alternative_acceptor.278"; transcript_id "alternative_acceptor.278"; gene_name "CUFF.1890"; flanks "6348724-,6350783^"; structure "1-,2-"; splice_chain "6349415-,6350783-";
chr17	juncbase	jcn_only_AA	79220858	79225293	.	-	.	gene_id "jcn_only_AA.387"; transcript_id "jcn_only_AA.387"; gene_name "CUFF.1964"; flanks "79220858-,79225293^"; structure "1-,2-"; splice_chain "79223893-,79220858-";
chr17	juncbase	jcn_only_AA	79220861	79225293	.	-	.	gene_id "jcn_only_AA.388"; transcript_id "jcn_only_AA.388"; gene_name "CUFF.1964"; flanks "79220861-,79225293^"; structure "1-,2-"; splice_chain "79223893-,79220861-";
chr17	juncbase	jcn_only_AD	1617150	1615693	.	-	.	gene_id "jcn_only_AD.362"; transcript_id "jcn_only_AD.362"; gene_name ""; flanks "1617150-,1615693^"; structure "1^,2^"; splice_chain "1617150^,1616997^";
chr17	juncbase	jcn_only_AD	79995490	79994889	.	-	.	gene_id "jcn_only_AD.363"; transcript_id "jcn_only_AD.363"; gene_name "CUFF.1975"; flanks "79995490-,79994889^"; structure "1^,2^"; splice_chain "79995507^,79995490^";
chr17	juncbase	jcn_only_AD	79995326	79994889	.	-	.	gene_id "jcn_only_AD.364"; transcript_id "jcn_only_AD.364"; gene_name "CUFF.1975"; flanks "79995326-,79994889^"; structure "1^,2^"; splice_chain "79995507^,79995326^";
chr17	juncbase	jcn_only_AA	21437282	21438689	.	-	.	gene_id "jcn_only_AA.389"; transcript_id "jcn_only_AA.389"; gene_name "CUFF.1907"; flanks "21437282-,21438689^"; structure "1-,2-"; splice_chain "21437832-,21437282-";
chr17	juncbase	intron_retention	15603482	15603587	.	+	.	gene_id "intron_retention.348"; transcript_id "intron_retention.348"; gene_name "CUFF.1900"; flanks "15603482-,15603587^"; structure "0,1^2-"; splice_chain ",15603482^15603587-";
chr17	juncbase	jcn_only_AA	61561902	61562597	.	+	.	gene_id "jcn_only_AA.390"; transcript_id "jcn_only_AA.390"; gene_name "CUFF.1942"; flanks "61561902-,61562597^"; structure "1-,2-"; splice_chain "61562331-,61562597-";
chr17	juncbase	alternative_donor	47307939	47304120	.	-	.	gene_id "alternative_donor.258"; transcript_id "alternative_donor.258"; gene_name "CUFF.1932"; flanks "47307939-,47304120^"; structure "1^,2^"; splice_chain "47307939^,47307830^";
chr17	juncbase	alternative_donor	66287227	66279264	.	-	.	gene_id "alternative_donor.259"; transcript_id "alternative_donor.259"; gene_name "CUFF.1953"; flanks "66287227-,66279264^"; structure "1^,2^"; splice_chain "66287227^,66281686^";
chr17	juncbase	intron_retention	20279444	20279148	.	-	.	gene_id "intron_retention.349"; transcript_id "intron_retention.349"; gene_name "CUFF.1905"; flanks "20279444-,20279148^"; structure "0,1^2-"; splice_chain ",20279444^20279148-";
chr17	juncbase	jcn_only_AA	15580996	15584179	.	-	.	gene_id "jcn_only_AA.391"; transcript_id "jcn_only_AA.391"; gene_name "CUFF.1898"; flanks "15580996-,15584179^"; structure "1-,2-"; splice_chain "15581035-,15580996-";
chr17	juncbase	jcn_only_AA	15580594	15584179	.	-	.	gene_id "jcn_only_AA.392"; transcript_id "jcn_only_AA.392"; gene_name "CUFF.1898"; flanks "15580594-,15584179^"; structure "1-,2-"; splice_chain "15581035-,15580594-";
chr17	juncbase	jcn_only_AA	15562190	15584179	.	-	.	gene_id "jcn_only_AA.393"; transcript_id "jcn_only_AA.393"; gene_name "CUFF.1898"; flanks "15562190-,15584179^"; structure "1-,2-"; splice_chain "15581035-,15562190-";
chr17	juncbase	jcn_only_AA	15557745	15584179	.	-	.	gene_id "jcn_only_AA.394"; transcript_id "jcn_only_AA.394"; gene_name "CUFF.1898"; flanks "15557745-,15584179^"; structure "1-,2-"; splice_chain "15581035-,15557745-";
chr17	juncbase	jcn_only_AA	15546130	15584179	.	-	.	gene_id "jcn_only_AA.395"; transcript_id "jcn_only_AA.395"; gene_name "CUFF.1898"; flanks "15546130-,15584179^"; structure "1-,2-"; splice_chain "15581035-,15546130-";
chr17	juncbase	intron_retention	15587510	15586471	.	-	.	gene_id "intron_retention.350"; transcript_id "intron_retention.350"; gene_name "CUFF.1898"; flanks "15587510-,15586471^"; structure "0,1^2-"; splice_chain ",15587510^15586471-";
chr17	juncbase	alternative_acceptor	15584536	15586350	.	-	.	gene_id "alternative_acceptor.279"; transcript_id "alternative_acceptor.279"; gene_name "CUFF.1898"; flanks "15584536-,15586350^"; structure "1-,2-"; splice_chain "15584536-,15584267-";
chr17	juncbase	alternative_acceptor	15586265	15586350	.	-	.	gene_id "alternative_acceptor.280"; transcript_id "alternative_acceptor.280"; gene_name "CUFF.1898"; flanks "15586265-,15586350^"; structure "1-,2-"; splice_chain "15586265-,15584267-";
chr17	juncbase	alternative_acceptor	15586278	15586350	.	-	.	gene_id "alternative_acceptor.281"; transcript_id "alternative_acceptor.281"; gene_name "CUFF.1898"; flanks "15586278-,15586350^"; structure "1-,2-"; splice_chain "15586278-,15584267-";
chr17	juncbase	jcn_only_AD	29626624	29652838	.	+	.	gene_id "jcn_only_AD.365"; transcript_id "jcn_only_AD.365"; gene_name "CUFF.1912"; flanks "29626624-,29652838^"; structure "1^,2^"; splice_chain "29626624^,29645582^";
chr17	juncbase	jcn_only_AD	29592357	29652838	.	+	.	gene_id "jcn_only_AD.366"; transcript_id "jcn_only_AD.366"; gene_name "CUFF.1912"; flanks "29592357-,29652838^"; structure "1^,2^"; splice_chain "29592357^,29645582^";
chr17	juncbase	jcn_only_AD	15580490	15555260	.	-	.	gene_id "jcn_only_AD.367"; transcript_id "jcn_only_AD.367"; gene_name "CUFF.1898"; flanks "15580490-,15555260^"; structure "1^,2^"; splice_chain "15580490^,15562116^";
chr17	juncbase	intron_retention	56082775	56082402	.	-	.	gene_id "intron_retention.351"; transcript_id "intron_retention.351"; gene_name ""; flanks "56082775-,56082402^"; structure "0,1^2-"; splice_chain ",56082775^56082402-";
chr17	juncbase	jcn_only_AD	80439087	80441592	.	+	.	gene_id "jcn_only_AD.368"; transcript_id "jcn_only_AD.368"; gene_name "CUFF.1977"; flanks "80439087-,80441592^"; structure "1^,2^"; splice_chain "80439087^,80441180^";
chr17	juncbase	alternative_acceptor	79220858	79225293	.	-	.	gene_id "alternative_acceptor.282"; transcript_id "alternative_acceptor.282"; gene_name "CUFF.1964"; flanks "79220858-,79225293^"; structure "1-,2-"; splice_chain "79223893-,79220858-";
chr17	juncbase	alternative_acceptor	79220861	79225293	.	-	.	gene_id "alternative_acceptor.283"; transcript_id "alternative_acceptor.283"; gene_name "CUFF.1964"; flanks "79220861-,79225293^"; structure "1-,2-"; splice_chain "79223893-,79220861-";
chr17	juncbase	jcn_only_AD	1937136	1939264	.	+	.	gene_id "jcn_only_AD.369"; transcript_id "jcn_only_AD.369"; gene_name "CUFF.1881"; flanks "1937136-,1939264^"; structure "1^,2^"; splice_chain "1937136^,1938314^";
chr17	juncbase	jcn_only_AD	75543174	75557027	.	+	.	gene_id "jcn_only_AD.370"; transcript_id "jcn_only_AD.370"; gene_name "CUFF.1958"; flanks "75543174-,75557027^"; structure "1^,2^"; splice_chain "75543174^,75556925^";
chr17	juncbase	intron_retention	61907309	61907493	.	+	.	gene_id "intron_retention.352"; transcript_id "intron_retention.352"; gene_name ""; flanks "61907309-,61907493^"; structure "0,1^2-"; splice_chain ",61907309^61907493-";
chr17	juncbase	alternative_acceptor	66526142	66547225	.	+	.	gene_id "alternative_acceptor.284"; transcript_id "alternative_acceptor.284"; gene_name ""; flanks "66526142-,66547225^"; structure "1-,2-"; splice_chain "66526418-,66547225-";
chr17	juncbase	alternative_acceptor	1616219	1616997	.	-	.	gene_id "alternative_acceptor.285"; transcript_id "alternative_acceptor.285"; gene_name "CUFF.1878"; flanks "1616219-,1616997^"; structure "1-,2-"; splice_chain "1616349-,1616219-";
chr17	juncbase	alternative_acceptor	1615693	1616997	.	-	.	gene_id "alternative_acceptor.286"; transcript_id "alternative_acceptor.286"; gene_name "CUFF.1878"; flanks "1615693-,1616997^"; structure "1-,2-"; splice_chain "1616349-,1615693-";
chr17	juncbase	alternative_acceptor	1616189	1616997	.	-	.	gene_id "alternative_acceptor.287"; transcript_id "alternative_acceptor.287"; gene_name "CUFF.1878"; flanks "1616189-,1616997^"; structure "1-,2-"; splice_chain "1616349-,1616189-";
chr17	juncbase	alternative_acceptor	1616198	1616997	.	-	.	gene_id "alternative_acceptor.288"; transcript_id "alternative_acceptor.288"; gene_name "CUFF.1878"; flanks "1616198-,1616997^"; structure "1-,2-"; splice_chain "1616349-,1616198-";
chr17	juncbase	intron_retention	79225293	79220861	.	-	.	gene_id "intron_retention.353"; transcript_id "intron_retention.353"; gene_name "CUFF.1964"; flanks "79225293-,79220861^"; structure "0,1^2-"; splice_chain ",79225293^79220861-";
chr17	juncbase	jcn_only_AA	15586471	15587510	.	-	.	gene_id "jcn_only_AA.396"; transcript_id "jcn_only_AA.396"; gene_name "CUFF.1898"; flanks "15586471-,15587510^"; structure "1-,2-"; splice_chain "15586685-,15586471-";
chr17	juncbase	jcn_only_AA	61904874	61905034	.	+	.	gene_id "jcn_only_AA.397"; transcript_id "jcn_only_AA.397"; gene_name ""; flanks "61904874-,61905034^"; structure "1-,2-"; splice_chain "61905034-,61905498-";
chr17	juncbase	jcn_only_AA	61904874	61905211	.	+	.	gene_id "jcn_only_AA.398"; transcript_id "jcn_only_AA.398"; gene_name ""; flanks "61904874-,61905211^"; structure "1-,2-"; splice_chain "61905211-,61905498-";
chr17	juncbase	jcn_only_AA	61904874	61905189	.	+	.	gene_id "jcn_only_AA.399"; transcript_id "jcn_only_AA.399"; gene_name ""; flanks "61904874-,61905189^"; structure "1-,2-"; splice_chain "61905189-,61905498-";
chr17	juncbase	jcn_only_AA	61904874	61905479	.	+	.	gene_id "jcn_only_AA.400"; transcript_id "jcn_only_AA.400"; gene_name ""; flanks "61904874-,61905479^"; structure "1-,2-"; splice_chain "61905479-,61905498-";
chr17	juncbase	jcn_only_AA	79994889	79995326	.	-	.	gene_id "jcn_only_AA.401"; transcript_id "jcn_only_AA.401"; gene_name "CUFF.1975"; flanks "79994889-,79995326^"; structure "1-,2-"; splice_chain "79994964-,79994889-";
chr17	juncbase	alternative_acceptor	57775339	57784732	.	-	.	gene_id "alternative_acceptor.289"; transcript_id "alternative_acceptor.289"; gene_name "CUFF.1939"; flanks "57775339-,57784732^"; structure "1-,2-"; splice_chain "57775339-,57756905-";
chr17	juncbase	alternative_acceptor	57777237	57784732	.	-	.	gene_id "alternative_acceptor.290"; transcript_id "alternative_acceptor.290"; gene_name "CUFF.1939"; flanks "57777237-,57784732^"; structure "1-,2-"; splice_chain "57777237-,57756905-";
chr17	juncbase	alternative_acceptor	57777550	57784732	.	-	.	gene_id "alternative_acceptor.291"; transcript_id "alternative_acceptor.291"; gene_name "CUFF.1939"; flanks "57777550-,57784732^"; structure "1-,2-"; splice_chain "57777550-,57756905-";
chr17	juncbase	alternative_acceptor	29592357	29652838	.	+	.	gene_id "alternative_acceptor.292"; transcript_id "alternative_acceptor.292"; gene_name "CUFF.1912"; flanks "29592357-,29652838^"; structure "1-,2-"; splice_chain "29626528-,29652838-";
chr17	juncbase	jcn_only_AD	61904874	61905479	.	+	.	gene_id "jcn_only_AD.371"; transcript_id "jcn_only_AD.371"; gene_name ""; flanks "61904874-,61905479^"; structure "1^,2^"; splice_chain "61904874^,61905283^";
chr17	juncbase	alternative_donor	15584365	15584267	.	-	.	gene_id "alternative_donor.260"; transcript_id "alternative_donor.260"; gene_name ""; flanks "15584365-,15584267^"; structure "1^,2^"; splice_chain "15586350^,15584365^";
chr17	juncbase	alternative_donor	15586175	15584267	.	-	.	gene_id "alternative_donor.261"; transcript_id "alternative_donor.261"; gene_name ""; flanks "15586175-,15584267^"; structure "1^,2^"; splice_chain "15586350^,15586175^";
chr17	juncbase	alternative_donor	15586168	15584267	.	-	.	gene_id "alternative_donor.262"; transcript_id "alternative_donor.262"; gene_name ""; flanks "15586168-,15584267^"; structure "1^,2^"; splice_chain "15586350^,15586168^";
chr17	juncbase	intron_retention	66508689	66511535	.	+	.	gene_id "intron_retention.354"; transcript_id "intron_retention.354"; gene_name "CUFF.1954"; flanks "66508689-,66511535^"; structure "0,1^2-"; splice_chain ",66508689^66511535-";
chr17	juncbase	jcn_only_AA	61564434	61566009	.	+	.	gene_id "jcn_only_AA.402"; transcript_id "jcn_only_AA.402"; gene_name "CUFF.1942,CUFF.1977"; flanks "61564434-,61566009^"; structure "1-,2-"; splice_chain "61565931-,61566009-";
chr17	juncbase	jcn_only_AA	1616219	1616997	.	-	.	gene_id "jcn_only_AA.403"; transcript_id "jcn_only_AA.403"; gene_name "CUFF.1878"; flanks "1616219-,1616997^"; structure "1-,2-"; splice_chain "1616219-,1615693-";
chr17	juncbase	jcn_only_AA	1616189	1616997	.	-	.	gene_id "jcn_only_AA.404"; transcript_id "jcn_only_AA.404"; gene_name "CUFF.1878"; flanks "1616189-,1616997^"; structure "1-,2-"; splice_chain "1616189-,1615693-";
chr17	juncbase	jcn_only_AA	1616349	1616997	.	-	.	gene_id "jcn_only_AA.405"; transcript_id "jcn_only_AA.405"; gene_name "CUFF.1878"; flanks "1616349-,1616997^"; structure "1-,2-"; splice_chain "1616349-,1615693-";
chr17	juncbase	jcn_only_AA	1616198	1616997	.	-	.	gene_id "jcn_only_AA.406"; transcript_id "jcn_only_AA.406"; gene_name "CUFF.1878"; flanks "1616198-,1616997^"; structure "1-,2-"; splice_chain "1616198-,1615693-";
chr17	juncbase	alternative_donor	5436624	5436304	.	-	.	gene_id "alternative_donor.263"; transcript_id "alternative_donor.263"; gene_name "CUFF.1889"; flanks "5436624-,5436304^"; structure "1^,2^"; splice_chain "5436624^,5436612^";
chr17	juncbase	alternative_donor	79994058	79993939	.	-	.	gene_id "alternative_donor.264"; transcript_id "alternative_donor.264"; gene_name "CUFF.1875,CUFF.1975"; flanks "79994058-,79993939^"; structure "1^,2^"; splice_chain "79994058^,79994023^";
chr17	juncbase	alternative_donor	79994067	79993939	.	-	.	gene_id "alternative_donor.265"; transcript_id "alternative_donor.265"; gene_name "CUFF.1875,CUFF.1975"; flanks "79994067-,79993939^"; structure "1^,2^"; splice_chain "79994067^,79994023^";
chr17	juncbase	alternative_acceptor	1616219	1616997	.	-	.	gene_id "alternative_acceptor.293"; transcript_id "alternative_acceptor.293"; gene_name "CUFF.1878"; flanks "1616219-,1616997^"; structure "1-,2-"; splice_chain "1616219-,1616189-";
chr17	juncbase	alternative_acceptor	1615693	1616997	.	-	.	gene_id "alternative_acceptor.294"; transcript_id "alternative_acceptor.294"; gene_name "CUFF.1878"; flanks "1615693-,1616997^"; structure "1-,2-"; splice_chain "1616189-,1615693-";
chr17	juncbase	alternative_acceptor	1616349	1616997	.	-	.	gene_id "alternative_acceptor.295"; transcript_id "alternative_acceptor.295"; gene_name "CUFF.1878"; flanks "1616349-,1616997^"; structure "1-,2-"; splice_chain "1616349-,1616189-";
chr17	juncbase	alternative_acceptor	1616198	1616997	.	-	.	gene_id "alternative_acceptor.296"; transcript_id "alternative_acceptor.296"; gene_name "CUFF.1878"; flanks "1616198-,1616997^"; structure "1-,2-"; splice_chain "1616198-,1616189-";
chr17	juncbase	cassette	80426772	80436676	.	+	.	gene_id "cassette.233"; transcript_id "cassette.233"; gene_name "CUFF.1977"; flanks "80426772-,80436676^"; structure "0,1-2^"; splice_chain ",80430440-80430574^";
chr17	juncbase	cassette	80426772	80436447	.	+	.	gene_id "cassette.234"; transcript_id "cassette.234"; gene_name "CUFF.1977"; flanks "80426772-,80436447^"; structure "0,1-2^"; splice_chain ",80430440-80430574^";
chr17	juncbase	intron_retention	79479490	79479386	.	-	.	gene_id "intron_retention.355"; transcript_id "intron_retention.355"; gene_name ""; flanks "79479490-,79479386^"; structure "0,1^2-"; splice_chain ",79479490^79479386-";
chr17	juncbase	cassette	66509119	66511535	.	+	.	gene_id "cassette.235"; transcript_id "cassette.235"; gene_name "CUFF.1954"; flanks "66509119-,66511535^"; structure "0,1-2^"; splice_chain ",66511128-66511260^";
chr17	juncbase	cassette	66508689	66511535	.	+	.	gene_id "cassette.236"; transcript_id "cassette.236"; gene_name "CUFF.1954"; flanks "66508689-,66511535^"; structure "0,1-2^"; splice_chain ",66511128-66511260^";
chr17	juncbase	cassette	66508283	66511535	.	+	.	gene_id "cassette.237"; transcript_id "cassette.237"; gene_name "CUFF.1954"; flanks "66508283-,66511535^"; structure "0,1-2^"; splice_chain ",66511128-66511260^";
chr17	juncbase	cassette	61560050	61560821	.	+	.	gene_id "cassette.238"; transcript_id "cassette.238"; gene_name "CUFF.1942"; flanks "61560050-,61560821^"; structure "0,1-2^"; splice_chain ",61560390-61560534^";
chr17	juncbase	cassette	25969374	25972887	.	+	.	gene_id "cassette.239"; transcript_id "cassette.239"; gene_name "CUFF.1908"; flanks "25969374-,25972887^"; structure "0,1-2^"; splice_chain ",25970551-25970646^";
chr17	juncbase	cassette	25969374	25972340	.	+	.	gene_id "cassette.240"; transcript_id "cassette.240"; gene_name "CUFF.1908"; flanks "25969374-,25972340^"; structure "0,1-2^"; splice_chain ",25970551-25970646^";
chr17	juncbase	jcn_only_AA	61905569	61907212	.	+	.	gene_id "jcn_only_AA.407"; transcript_id "jcn_only_AA.407"; gene_name ""; flanks "61905569-,61907212^"; structure "1-,2-"; splice_chain "61906854-,61907212-";
chr17	juncbase	alternative_acceptor	1616349	1617150	.	-	.	gene_id "alternative_acceptor.297"; transcript_id "alternative_acceptor.297"; gene_name "CUFF.1878"; flanks "1616349-,1617150^"; structure "1-,2-"; splice_chain "1616349-,1616189-";
chr17	juncbase	alternative_acceptor	1616198	1617150	.	-	.	gene_id "alternative_acceptor.298"; transcript_id "alternative_acceptor.298"; gene_name "CUFF.1878"; flanks "1616198-,1617150^"; structure "1-,2-"; splice_chain "1616198-,1616189-";
chr17	juncbase	alternative_acceptor	1615693	1617150	.	-	.	gene_id "alternative_acceptor.299"; transcript_id "alternative_acceptor.299"; gene_name "CUFF.1878"; flanks "1615693-,1617150^"; structure "1-,2-"; splice_chain "1616189-,1615693-";
chr17	juncbase	alternative_acceptor	1615940	1617150	.	-	.	gene_id "alternative_acceptor.300"; transcript_id "alternative_acceptor.300"; gene_name "CUFF.1878"; flanks "1615940-,1617150^"; structure "1-,2-"; splice_chain "1616189-,1615940-";
chr17	juncbase	intron_retention	80416706	80417876	.	+	.	gene_id "intron_retention.356"; transcript_id "intron_retention.356"; gene_name ""; flanks "80416706-,80417876^"; structure "0,1^2-"; splice_chain ",80416706^80417876-";
chr17	juncbase	cassette	15603482	15604466	.	+	.	gene_id "cassette.241"; transcript_id "cassette.241"; gene_name "CUFF.1900"; flanks "15603482-,15604466^"; structure "0,1-2^"; splice_chain ",15603587-15603680^";
chr17	juncbase	alternative_donor	79995490	79994889	.	-	.	gene_id "alternative_donor.266"; transcript_id "alternative_donor.266"; gene_name "CUFF.1975"; flanks "79995490-,79994889^"; structure "1^,2^"; splice_chain "79995490^,79995326^";
chr17	juncbase	alternative_donor	79995507	79994889	.	-	.	gene_id "alternative_donor.267"; transcript_id "alternative_donor.267"; gene_name "CUFF.1975"; flanks "79995507-,79994889^"; structure "1^,2^"; splice_chain "79995507^,79995326^";
chr17	juncbase	intron_retention	66509119	66511128	.	+	.	gene_id "intron_retention.357"; transcript_id "intron_retention.357"; gene_name ""; flanks "66509119-,66511128^"; structure "0,1^2-"; splice_chain ",66509119^66511128-";
chr17	juncbase	intron_retention	79478214	79478134	.	-	.	gene_id "intron_retention.358"; transcript_id "intron_retention.358"; gene_name "CUFF.1968"; flanks "79478214-,79478134^"; structure "0,1^2-"; splice_chain ",79478214^79478134-";
chr17	juncbase	jcn_only_AA	79220858	79225293	.	-	.	gene_id "jcn_only_AA.408"; transcript_id "jcn_only_AA.408"; gene_name "CUFF.1964"; flanks "79220858-,79225293^"; structure "1-,2-"; splice_chain "79220861-,79220858-";
chr17	juncbase	jcn_only_AA	79223893	79225293	.	-	.	gene_id "jcn_only_AA.409"; transcript_id "jcn_only_AA.409"; gene_name "CUFF.1964"; flanks "79223893-,79225293^"; structure "1-,2-"; splice_chain "79223893-,79220861-";
chr17	juncbase	intron_retention	26554519	26554634	.	+	.	gene_id "intron_retention.359"; transcript_id "intron_retention.359"; gene_name "CUFF.1909"; flanks "26554519-,26554634^"; structure "0,1^2-"; splice_chain ",26554519^26554634-";
chr17	juncbase	alternative_donor	29667601	29670027	.	+	.	gene_id "alternative_donor.268"; transcript_id "alternative_donor.268"; gene_name "CUFF.1912"; flanks "29667601-,29670027^"; structure "1^,2^"; splice_chain "29667601^,29667663^";
chr17	juncbase	alternative_donor	29626624	29652838	.	+	.	gene_id "alternative_donor.269"; transcript_id "alternative_donor.269"; gene_name "CUFF.1912"; flanks "29626624-,29652838^"; structure "1^,2^"; splice_chain "29592357^,29626624^";
chr17	juncbase	alternative_donor	29645582	29652838	.	+	.	gene_id "alternative_donor.270"; transcript_id "alternative_donor.270"; gene_name "CUFF.1912"; flanks "29645582-,29652838^"; structure "1^,2^"; splice_chain "29592357^,29645582^";
chr17	juncbase	cassette	5442735	5437308	.	-	.	gene_id "cassette.242"; transcript_id "cassette.242"; gene_name "CUFF.1889"; flanks "5442735-,5437308^"; structure "0,1-2^"; splice_chain ",5440260-5440171^";
chr17	juncbase	jcn_only_AD	79994290	79994184	.	-	.	gene_id "jcn_only_AD.372"; transcript_id "jcn_only_AD.372"; gene_name ""; flanks "79994290-,79994184^"; structure "1^,2^"; splice_chain "79994290^,79994260^";
chr17	juncbase	intron_retention	61905569	61907212	.	+	.	gene_id "intron_retention.360"; transcript_id "intron_retention.360"; gene_name ""; flanks "61905569-,61907212^"; structure "0,1^2-"; splice_chain ",61905569^61907212-";
chr17	juncbase	jcn_only_AD	56083871	56082402	.	-	.	gene_id "jcn_only_AD.373"; transcript_id "jcn_only_AD.373"; gene_name ""; flanks "56083871-,56082402^"; structure "1^,2^"; splice_chain "56083871^,56082775^";
chr17	juncbase	jcn_only_AD	56082759	56082402	.	-	.	gene_id "jcn_only_AD.374"; transcript_id "jcn_only_AD.374"; gene_name ""; flanks "56082759-,56082402^"; structure "1^,2^"; splice_chain "56082775^,56082759^";
chr17	juncbase	alternative_donor	80436794	80438958	.	+	.	gene_id "alternative_donor.271"; transcript_id "alternative_donor.271"; gene_name "CUFF.1977"; flanks "80436794-,80438958^"; structure "1^,2^"; splice_chain "80436794^,80438420^";
chr17	juncbase	jcn_only_AA	80416384	80417868	.	+	.	gene_id "jcn_only_AA.410"; transcript_id "jcn_only_AA.410"; gene_name "CUFF.1881,CUFF.1977"; flanks "80416384-,80417868^"; structure "1-,2-"; splice_chain "80417151-,80417868-";
chr17	juncbase	alternative_acceptor	79994889	79995326	.	-	.	gene_id "alternative_acceptor.301"; transcript_id "alternative_acceptor.301"; gene_name "CUFF.1975"; flanks "79994889-,79995326^"; structure "1-,2-"; splice_chain "79994964-,79994889-";
chr17	juncbase	alternative_acceptor	57756905	57784732	.	-	.	gene_id "alternative_acceptor.302"; transcript_id "alternative_acceptor.302"; gene_name "CUFF.1939"; flanks "57756905-,57784732^"; structure "1-,2-"; splice_chain "57775339-,57756905-";
chr17	juncbase	alternative_acceptor	57777237	57784732	.	-	.	gene_id "alternative_acceptor.303"; transcript_id "alternative_acceptor.303"; gene_name "CUFF.1939"; flanks "57777237-,57784732^"; structure "1-,2-"; splice_chain "57777237-,57775339-";
chr17	juncbase	alternative_acceptor	57777550	57784732	.	-	.	gene_id "alternative_acceptor.304"; transcript_id "alternative_acceptor.304"; gene_name "CUFF.1939"; flanks "57777550-,57784732^"; structure "1-,2-"; splice_chain "57777550-,57775339-";
chr17	juncbase	intron_retention	1939385	1939723	.	+	.	gene_id "intron_retention.361"; transcript_id "intron_retention.361"; gene_name "CUFF.1881"; flanks "1939385-,1939723^"; structure "0,1^2-"; splice_chain ",1939385^1939723-";
chr17	juncbase	intron_retention	61908976	61909084	.	+	.	gene_id "intron_retention.362"; transcript_id "intron_retention.362"; gene_name "CUFF.1944"; flanks "61908976-,61909084^"; structure "0,1^2-"; splice_chain ",61908976^61909084-";
chr17	juncbase	intron_retention	79479760	79479386	.	-	.	gene_id "intron_retention.363"; transcript_id "intron_retention.363"; gene_name ""; flanks "79479760-,79479386^"; structure "0,1^2-"; splice_chain ",79479760^79479386-";
chr17	juncbase	jcn_only_AD	6352727	6353682	.	+	.	gene_id "jcn_only_AD.375"; transcript_id "jcn_only_AD.375"; gene_name "CUFF.1890"; flanks "6352727-,6353682^"; structure "1^,2^"; splice_chain "6352727^,6353392^";
chr17	juncbase	cassette	25974144	25975862	.	+	.	gene_id "cassette.243"; transcript_id "cassette.243"; gene_name "CUFF.1908"; flanks "25974144-,25975862^"; structure "0,1-2^"; splice_chain ",25974296-25974458^";
chr17	juncbase	jcn_only_AD	77005746	77001563	.	-	.	gene_id "jcn_only_AD.376"; transcript_id "jcn_only_AD.376"; gene_name "CUFF.1960"; flanks "77005746-,77001563^"; structure "1^,2^"; splice_chain "77005746^,77004145^";
chr17	juncbase	cassette	15638384	15638911	.	+	.	gene_id "cassette.244"; transcript_id "cassette.244"; gene_name "CUFF.1900"; flanks "15638384-,15638911^"; structure "0,1-2^"; splice_chain ",15638662-15638737^";
chr17	juncbase	jcn_only_AD	29657516	29661856	.	+	.	gene_id "jcn_only_AD.377"; transcript_id "jcn_only_AD.377"; gene_name "CUFF.1912"; flanks "29657516-,29661856^"; structure "1^,2^"; splice_chain "29657516^,29661748^";
chr17	juncbase	alternative_donor	79479490	79479386	.	-	.	gene_id "alternative_donor.272"; transcript_id "alternative_donor.272"; gene_name ""; flanks "79479490-,79479386^"; structure "1^,2^"; splice_chain "79479760^,79479490^";
chr17	juncbase	alternative_donor	79481573	79479386	.	-	.	gene_id "alternative_donor.273"; transcript_id "alternative_donor.273"; gene_name ""; flanks "79481573-,79479386^"; structure "1^,2^"; splice_chain "79481573^,79479760^";
chr17	juncbase	alternative_donor	79490668	79479386	.	-	.	gene_id "alternative_donor.274"; transcript_id "alternative_donor.274"; gene_name ""; flanks "79490668-,79479386^"; structure "1^,2^"; splice_chain "79490668^,79479760^";
chr17	juncbase	alternative_donor	79479641	79479386	.	-	.	gene_id "alternative_donor.275"; transcript_id "alternative_donor.275"; gene_name ""; flanks "79479641-,79479386^"; structure "1^,2^"; splice_chain "79479760^,79479641^";
chr17	juncbase	alternative_donor	79479632	79479386	.	-	.	gene_id "alternative_donor.276"; transcript_id "alternative_donor.276"; gene_name ""; flanks "79479632-,79479386^"; structure "1^,2^"; splice_chain "79479760^,79479632^";
chr17	juncbase	jcn_only_AA	5405192	5421066	.	-	.	gene_id "jcn_only_AA.411"; transcript_id "jcn_only_AA.411"; gene_name "CUFF.1889"; flanks "5405192-,5421066^"; structure "1-,2-"; splice_chain "5409297-,5405192-";
chr17	juncbase	jcn_only_AA	5418837	5421066	.	-	.	gene_id "jcn_only_AA.412"; transcript_id "jcn_only_AA.412"; gene_name "CUFF.1889"; flanks "5418837-,5421066^"; structure "1-,2-"; splice_chain "5418837-,5409297-";
chr17	juncbase	jcn_only_AA	15584267	15586168	.	-	.	gene_id "jcn_only_AA.413"; transcript_id "jcn_only_AA.413"; gene_name ""; flanks "15584267-,15586168^"; structure "1-,2-"; splice_chain "15584536-,15584267-";
chr17	juncbase	alternative_donor	79898626	79894069	.	-	.	gene_id "alternative_donor.277"; transcript_id "alternative_donor.277"; gene_name "CUFF.1972"; flanks "79898626-,79894069^"; structure "1^,2^"; splice_chain "79900172^,79898626^";
chr17	juncbase	alternative_donor	79894624	79894069	.	-	.	gene_id "alternative_donor.278"; transcript_id "alternative_donor.278"; gene_name "CUFF.1972"; flanks "79894624-,79894069^"; structure "1^,2^"; splice_chain "79900172^,79894624^";
chr17	juncbase	intron_retention	79994420	79994324	.	-	.	gene_id "intron_retention.364"; transcript_id "intron_retention.364"; gene_name "CUFF.1975"; flanks "79994420-,79994324^"; structure "0,1^2-"; splice_chain ",79994420^79994324-";
chr17	juncbase	alternative_acceptor	1615693	1616997	.	-	.	gene_id "alternative_acceptor.305"; transcript_id "alternative_acceptor.305"; gene_name "CUFF.1878"; flanks "1615693-,1616997^"; structure "1-,2-"; splice_chain "1616219-,1615693-";
chr17	juncbase	alternative_acceptor	1616189	1616997	.	-	.	gene_id "alternative_acceptor.306"; transcript_id "alternative_acceptor.306"; gene_name "CUFF.1878"; flanks "1616189-,1616997^"; structure "1-,2-"; splice_chain "1616219-,1616189-";
chr17	juncbase	alternative_acceptor	1616349	1616997	.	-	.	gene_id "alternative_acceptor.307"; transcript_id "alternative_acceptor.307"; gene_name "CUFF.1878"; flanks "1616349-,1616997^"; structure "1-,2-"; splice_chain "1616349-,1616219-";
chr17	juncbase	alternative_acceptor	1616198	1616997	.	-	.	gene_id "alternative_acceptor.308"; transcript_id "alternative_acceptor.308"; gene_name "CUFF.1878"; flanks "1616198-,1616997^"; structure "1-,2-"; splice_chain "1616219-,1616198-";
chr17	juncbase	intron_retention	25974144	25974296	.	+	.	gene_id "intron_retention.365"; transcript_id "intron_retention.365"; gene_name "CUFF.1908"; flanks "25974144-,25974296^"; structure "0,1^2-"; splice_chain ",25974144^25974296-";
chr17	juncbase	alternative_acceptor	1616198	1617150	.	-	.	gene_id "alternative_acceptor.309"; transcript_id "alternative_acceptor.309"; gene_name "CUFF.1878"; flanks "1616198-,1617150^"; structure "1-,2-"; splice_chain "1616349-,1616198-";
chr17	juncbase	alternative_acceptor	1616189	1617150	.	-	.	gene_id "alternative_acceptor.310"; transcript_id "alternative_acceptor.310"; gene_name "CUFF.1878"; flanks "1616189-,1617150^"; structure "1-,2-"; splice_chain "1616349-,1616189-";
chr17	juncbase	alternative_acceptor	1615693	1617150	.	-	.	gene_id "alternative_acceptor.311"; transcript_id "alternative_acceptor.311"; gene_name "CUFF.1878"; flanks "1615693-,1617150^"; structure "1-,2-"; splice_chain "1616349-,1615693-";
chr17	juncbase	alternative_acceptor	1615940	1617150	.	-	.	gene_id "alternative_acceptor.312"; transcript_id "alternative_acceptor.312"; gene_name "CUFF.1878"; flanks "1615940-,1617150^"; structure "1-,2-"; splice_chain "1616349-,1615940-";
chr17	juncbase	intron_retention	79995507	79995423	.	-	.	gene_id "intron_retention.366"; transcript_id "intron_retention.366"; gene_name ""; flanks "79995507-,79995423^"; structure "0,1^2-"; splice_chain ",79995507^79995423-";
chr17	juncbase	alternative_acceptor	1617308	1617665	.	-	.	gene_id "alternative_acceptor.313"; transcript_id "alternative_acceptor.313"; gene_name "CUFF.1878"; flanks "1617308-,1617665^"; structure "1-,2-"; splice_chain "1617339-,1617308-";
chr17	juncbase	intron_retention	56083871	56082402	.	-	.	gene_id "intron_retention.367"; transcript_id "intron_retention.367"; gene_name ""; flanks "56083871-,56082402^"; structure "0,1^2-"; splice_chain ",56083871^56082402-";
chr17	juncbase	intron_retention	61905283	61905498	.	+	.	gene_id "intron_retention.368"; transcript_id "intron_retention.368"; gene_name ""; flanks "61905283-,61905498^"; structure "0,1^2-"; splice_chain ",61905283^61905498-";
chr17	juncbase	jcn_only_AD	61562330	61562597	.	+	.	gene_id "jcn_only_AD.378"; transcript_id "jcn_only_AD.378"; gene_name "CUFF.1942"; flanks "61562330-,61562597^"; structure "1^,2^"; splice_chain "61561902^,61562330^";
chr17	juncbase	jcn_only_AD	61562427	61562597	.	+	.	gene_id "jcn_only_AD.379"; transcript_id "jcn_only_AD.379"; gene_name "CUFF.1942"; flanks "61562427-,61562597^"; structure "1^,2^"; splice_chain "61561902^,61562427^";
chr17	juncbase	cassette	40762555	40744180	.	-	.	gene_id "cassette.245"; transcript_id "cassette.245"; gene_name "CUFF.1924"; flanks "40762555-,40744180^"; structure "0,1-2^"; splice_chain ",40748645-40748551^";
chr17	juncbase	intron_retention	6352727	6353682	.	+	.	gene_id "intron_retention.369"; transcript_id "intron_retention.369"; gene_name ""; flanks "6352727-,6353682^"; structure "0,1^2-"; splice_chain ",6352727^6353682-";
chr17	juncbase	alternative_acceptor	1616349	1617150	.	-	.	gene_id "alternative_acceptor.314"; transcript_id "alternative_acceptor.314"; gene_name "CUFF.1878"; flanks "1616349-,1617150^"; structure "1-,2-"; splice_chain "1616349-,1615693-";
chr17	juncbase	alternative_acceptor	1616198	1617150	.	-	.	gene_id "alternative_acceptor.315"; transcript_id "alternative_acceptor.315"; gene_name "CUFF.1878"; flanks "1616198-,1617150^"; structure "1-,2-"; splice_chain "1616198-,1615693-";
chr17	juncbase	alternative_acceptor	1616189	1617150	.	-	.	gene_id "alternative_acceptor.316"; transcript_id "alternative_acceptor.316"; gene_name "CUFF.1878"; flanks "1616189-,1617150^"; structure "1-,2-"; splice_chain "1616189-,1615693-";
chr17	juncbase	alternative_acceptor	1615940	1617150	.	-	.	gene_id "alternative_acceptor.317"; transcript_id "alternative_acceptor.317"; gene_name "CUFF.1878"; flanks "1615940-,1617150^"; structure "1-,2-"; splice_chain "1615940-,1615693-";
chr17	juncbase	jcn_only_AA	25967799	25969264	.	+	.	gene_id "jcn_only_AA.414"; transcript_id "jcn_only_AA.414"; gene_name "CUFF.1908"; flanks "25967799-,25969264^"; structure "1-,2-"; splice_chain "25967991-,25969264-";
chr17	juncbase	intron_retention	79895138	79894737	.	-	.	gene_id "intron_retention.370"; transcript_id "intron_retention.370"; gene_name ""; flanks "79895138-,79894737^"; structure "0,1^2-"; splice_chain ",79895138^79894737-";
chr17	juncbase	jcn_only_AD	61562427	61562597	.	+	.	gene_id "jcn_only_AD.380"; transcript_id "jcn_only_AD.380"; gene_name "CUFF.1942"; flanks "61562427-,61562597^"; structure "1^,2^"; splice_chain "61562330^,61562427^";
chr17	juncbase	jcn_only_AD	61561902	61562597	.	+	.	gene_id "jcn_only_AD.381"; transcript_id "jcn_only_AD.381"; gene_name "CUFF.1942"; flanks "61561902-,61562597^"; structure "1^,2^"; splice_chain "61561902^,61562330^";
chr17	juncbase	jcn_only_AD	40744074	40738909	.	-	.	gene_id "jcn_only_AD.382"; transcript_id "jcn_only_AD.382"; gene_name "CUFF.1924"; flanks "40744074-,40738909^"; structure "1^,2^"; splice_chain "40744074^,40739852^";
chr17	juncbase	alternative_donor	1617150	1616189	.	-	.	gene_id "alternative_donor.279"; transcript_id "alternative_donor.279"; gene_name ""; flanks "1617150-,1616189^"; structure "1^,2^"; splice_chain "1617150^,1616997^";
chr17	juncbase	alternative_donor	6352727	6353348	.	+	.	gene_id "alternative_donor.280"; transcript_id "alternative_donor.280"; gene_name "CUFF.1890"; flanks "6352727-,6353348^"; structure "1^,2^"; splice_chain "6352727^,6353098^";
chr17	juncbase	intron_retention	40761104	40738155	.	-	.	gene_id "intron_retention.371"; transcript_id "intron_retention.371"; gene_name ""; flanks "40761104-,40738155^"; structure "0,1^2-"; splice_chain ",40761104^40738155-";
chr17	juncbase	jcn_only_AD	79895138	79894737	.	-	.	gene_id "jcn_only_AD.383"; transcript_id "jcn_only_AD.383"; gene_name "CUFF.1972"; flanks "79895138-,79894737^"; structure "1^,2^"; splice_chain "79895138^,79895056^";
chr17	juncbase	jcn_only_AD	79895404	79894737	.	-	.	gene_id "jcn_only_AD.384"; transcript_id "jcn_only_AD.384"; gene_name "CUFF.1972"; flanks "79895404-,79894737^"; structure "1^,2^"; splice_chain "79895404^,79895056^";
chr17	juncbase	jcn_only_AD	79895134	79894737	.	-	.	gene_id "jcn_only_AD.385"; transcript_id "jcn_only_AD.385"; gene_name "CUFF.1972"; flanks "79895134-,79894737^"; structure "1^,2^"; splice_chain "79895134^,79895056^";
chr17	juncbase	jcn_only_AD	79895069	79894737	.	-	.	gene_id "jcn_only_AD.386"; transcript_id "jcn_only_AD.386"; gene_name "CUFF.1972"; flanks "79895069-,79894737^"; structure "1^,2^"; splice_chain "79895069^,79895056^";
chr17	juncbase	jcn_only_AD	79894846	79894737	.	-	.	gene_id "jcn_only_AD.387"; transcript_id "jcn_only_AD.387"; gene_name "CUFF.1972"; flanks "79894846-,79894737^"; structure "1^,2^"; splice_chain "79895056^,79894846^";
chr17	juncbase	jcn_only_AD	79895104	79894737	.	-	.	gene_id "jcn_only_AD.388"; transcript_id "jcn_only_AD.388"; gene_name "CUFF.1972"; flanks "79895104-,79894737^"; structure "1^,2^"; splice_chain "79895104^,79895056^";
chr17	juncbase	jcn_only_AA	1939385	1939823	.	+	.	gene_id "jcn_only_AA.415"; transcript_id "jcn_only_AA.415"; gene_name "CUFF.1881"; flanks "1939385-,1939823^"; structure "1-,2-"; splice_chain "1939723-,1939823-";
chr17	juncbase	cassette	41738434	41719400	.	-	.	gene_id "cassette.246"; transcript_id "cassette.246"; gene_name "CUFF.1926"; flanks "41738434-,41719400^"; structure "0,1-2^"; splice_chain ",41721028-41720856^";
chr17	juncbase	alternative_acceptor	79994184	79994260	.	-	.	gene_id "alternative_acceptor.318"; transcript_id "alternative_acceptor.318"; gene_name "CUFF.1975"; flanks "79994184-,79994260^"; structure "1-,2-"; splice_chain "79994198-,79994184-";
chr17	juncbase	alternative_donor	61571020	61571283	.	+	.	gene_id "alternative_donor.281"; transcript_id "alternative_donor.281"; gene_name "CUFF.1942"; flanks "61571020-,61571283^"; structure "1^,2^"; splice_chain "61568729^,61571020^";
chr17	juncbase	alternative_donor	61567389	61571283	.	+	.	gene_id "alternative_donor.282"; transcript_id "alternative_donor.282"; gene_name "CUFF.1942"; flanks "61567389-,61571283^"; structure "1^,2^"; splice_chain "61567389^,61568729^";
chr17	juncbase	cassette	15562116	15546130	.	-	.	gene_id "cassette.247"; transcript_id "cassette.247"; gene_name "CUFF.1898"; flanks "15562116-,15546130^"; structure "0,1-2^"; splice_chain ",15555260-15554405^";
chr17	juncbase	cassette	15580490	15546130	.	-	.	gene_id "cassette.248"; transcript_id "cassette.248"; gene_name "CUFF.1898"; flanks "15580490-,15546130^"; structure "0,1-2^"; splice_chain ",15555260-15554405^";
chr17	juncbase	jcn_only_AD	79900172	79894069	.	-	.	gene_id "jcn_only_AD.389"; transcript_id "jcn_only_AD.389"; gene_name "CUFF.1972"; flanks "79900172-,79894069^"; structure "1^,2^"; splice_chain "79900172^,79898626^";
chr17	juncbase	jcn_only_AD	79894624	79894069	.	-	.	gene_id "jcn_only_AD.390"; transcript_id "jcn_only_AD.390"; gene_name "CUFF.1972"; flanks "79894624-,79894069^"; structure "1^,2^"; splice_chain "79898626^,79894624^";
chr17	juncbase	alternative_donor	80417948	80422163	.	+	.	gene_id "alternative_donor.283"; transcript_id "alternative_donor.283"; gene_name "CUFF.1977"; flanks "80417948-,80422163^"; structure "1^,2^"; splice_chain "80417948^,80418199^";
chr17	juncbase	intron_retention	56082759	56082402	.	-	.	gene_id "intron_retention.372"; transcript_id "intron_retention.372"; gene_name ""; flanks "56082759-,56082402^"; structure "0,1^2-"; splice_chain ",56082759^56082402-";
chr17	juncbase	intron_retention	66508689	66511128	.	+	.	gene_id "intron_retention.373"; transcript_id "intron_retention.373"; gene_name "CUFF.1954"; flanks "66508689-,66511128^"; structure "0,1^2-"; splice_chain ",66508689^66511128-";
chr17	juncbase	intron_retention	79358929	79358832	.	-	.	gene_id "intron_retention.374"; transcript_id "intron_retention.374"; gene_name "CUFF.1967"; flanks "79358929-,79358832^"; structure "0,1^2-"; splice_chain ",79358929^79358832-";
chr17	juncbase	alternative_donor	15584365	15584267	.	-	.	gene_id "alternative_donor.284"; transcript_id "alternative_donor.284"; gene_name "CUFF.1898"; flanks "15584365-,15584267^"; structure "1^,2^"; splice_chain "15586168^,15584365^";
chr17	juncbase	alternative_donor	15586350	15584267	.	-	.	gene_id "alternative_donor.285"; transcript_id "alternative_donor.285"; gene_name "CUFF.1898"; flanks "15586350-,15584267^"; structure "1^,2^"; splice_chain "15586350^,15586168^";
chr17	juncbase	alternative_donor	15586175	15584267	.	-	.	gene_id "alternative_donor.286"; transcript_id "alternative_donor.286"; gene_name "CUFF.1898"; flanks "15586175-,15584267^"; structure "1^,2^"; splice_chain "15586175^,15586168^";
chr17	juncbase	cassette	1937136	1939823	.	+	.	gene_id "cassette.249"; transcript_id "cassette.249"; gene_name "CUFF.1881"; flanks "1937136-,1939823^"; structure "0,1-2^"; splice_chain ",1939264-1939385^";
chr17	juncbase	cassette	29490394	29508440	.	+	.	gene_id "cassette.250"; transcript_id "cassette.250"; gene_name "CUFF.1911"; flanks "29490394-,29508440^"; structure "0,1-2^"; splice_chain ",29496909-29497015^";
chr17	juncbase	intron_retention	1945525	1945899	.	+	.	gene_id "intron_retention.375"; transcript_id "intron_retention.375"; gene_name ""; flanks "1945525-,1945899^"; structure "0,1^2-"; splice_chain ",1945525^1945899-";
chr17	juncbase	alternative_acceptor	79223893	79225293	.	-	.	gene_id "alternative_acceptor.319"; transcript_id "alternative_acceptor.319"; gene_name "CUFF.1964"; flanks "79223893-,79225293^"; structure "1-,2-"; splice_chain "79223893-,79220858-";
chr17	juncbase	alternative_acceptor	79220861	79225293	.	-	.	gene_id "alternative_acceptor.320"; transcript_id "alternative_acceptor.320"; gene_name "CUFF.1964"; flanks "79220861-,79225293^"; structure "1-,2-"; splice_chain "79220861-,79220858-";
chr17	juncbase	alternative_donor	79895404	79894737	.	-	.	gene_id "alternative_donor.287"; transcript_id "alternative_donor.287"; gene_name "CUFF.1972"; flanks "79895404-,79894737^"; structure "1^,2^"; splice_chain "79895404^,79895138^";
chr17	juncbase	alternative_donor	79895134	79894737	.	-	.	gene_id "alternative_donor.288"; transcript_id "alternative_donor.288"; gene_name "CUFF.1972"; flanks "79895134-,79894737^"; structure "1^,2^"; splice_chain "79895138^,79895134^";
chr17	juncbase	alternative_donor	79895056	79894737	.	-	.	gene_id "alternative_donor.289"; transcript_id "alternative_donor.289"; gene_name "CUFF.1972"; flanks "79895056-,79894737^"; structure "1^,2^"; splice_chain "79895138^,79895056^";
chr17	juncbase	alternative_donor	79895069	79894737	.	-	.	gene_id "alternative_donor.290"; transcript_id "alternative_donor.290"; gene_name "CUFF.1972"; flanks "79895069-,79894737^"; structure "1^,2^"; splice_chain "79895138^,79895069^";
chr17	juncbase	alternative_donor	79894846	79894737	.	-	.	gene_id "alternative_donor.291"; transcript_id "alternative_donor.291"; gene_name "CUFF.1972"; flanks "79894846-,79894737^"; structure "1^,2^"; splice_chain "79895138^,79894846^";
chr17	juncbase	alternative_donor	79895104	79894737	.	-	.	gene_id "alternative_donor.292"; transcript_id "alternative_donor.292"; gene_name "CUFF.1972"; flanks "79895104-,79894737^"; structure "1^,2^"; splice_chain "79895138^,79895104^";
chr17	juncbase	cassette	35378313	35413901	.	+	.	gene_id "cassette.251"; transcript_id "cassette.251"; gene_name "CUFF.1919"; flanks "35378313-,35413901^"; structure "0,1-2^"; splice_chain ",35388911-35388982^";
chr17	juncbase	alternative_acceptor	61904874	61905034	.	+	.	gene_id "alternative_acceptor.321"; transcript_id "alternative_acceptor.321"; gene_name "CUFF.1944"; flanks "61904874-,61905034^"; structure "1-,2-"; splice_chain "61905034-,61905479-";
chr17	juncbase	alternative_acceptor	61904874	61905211	.	+	.	gene_id "alternative_acceptor.322"; transcript_id "alternative_acceptor.322"; gene_name "CUFF.1944"; flanks "61904874-,61905211^"; structure "1-,2-"; splice_chain "61905211-,61905479-";
chr17	juncbase	alternative_acceptor	61904874	61905189	.	+	.	gene_id "alternative_acceptor.323"; transcript_id "alternative_acceptor.323"; gene_name "CUFF.1944"; flanks "61904874-,61905189^"; structure "1-,2-"; splice_chain "61905189-,61905479-";
chr17	juncbase	alternative_acceptor	61904874	61905498	.	+	.	gene_id "alternative_acceptor.324"; transcript_id "alternative_acceptor.324"; gene_name "CUFF.1944"; flanks "61904874-,61905498^"; structure "1-,2-"; splice_chain "61905479-,61905498-";
chr17	juncbase	alternative_donor	61904874	61905498	.	+	.	gene_id "alternative_donor.293"; transcript_id "alternative_donor.293"; gene_name "CUFF.1944"; flanks "61904874-,61905498^"; structure "1^,2^"; splice_chain "61904874^,61905283^";
chr17	juncbase	intron_retention	79995326	79994964	.	-	.	gene_id "intron_retention.376"; transcript_id "intron_retention.376"; gene_name "CUFF.1975"; flanks "79995326-,79994964^"; structure "0,1^2-"; splice_chain ",79995326^79994964-";
chr17	juncbase	intron_retention	79895056	79894737	.	-	.	gene_id "intron_retention.377"; transcript_id "intron_retention.377"; gene_name ""; flanks "79895056-,79894737^"; structure "0,1^2-"; splice_chain ",79895056^79894737-";
chr17	juncbase	jcn_only_AA	15584536	15586350	.	-	.	gene_id "jcn_only_AA.416"; transcript_id "jcn_only_AA.416"; gene_name "CUFF.1898"; flanks "15584536-,15586350^"; structure "1-,2-"; splice_chain "15584536-,15584267-";
chr17	juncbase	jcn_only_AA	15586265	15586350	.	-	.	gene_id "jcn_only_AA.417"; transcript_id "jcn_only_AA.417"; gene_name "CUFF.1898"; flanks "15586265-,15586350^"; structure "1-,2-"; splice_chain "15586265-,15584267-";
chr17	juncbase	jcn_only_AA	15586278	15586350	.	-	.	gene_id "jcn_only_AA.418"; transcript_id "jcn_only_AA.418"; gene_name "CUFF.1898"; flanks "15586278-,15586350^"; structure "1-,2-"; splice_chain "15586278-,15584267-";
chr17	juncbase	cassette	15539350	15532512	.	-	.	gene_id "cassette.252"; transcript_id "cassette.252"; gene_name "CUFF.1898"; flanks "15539350-,15532512^"; structure "0,1-2^"; splice_chain ",15535028-15534933^";
chr17	juncbase	alternative_donor	79479490	79479386	.	-	.	gene_id "alternative_donor.294"; transcript_id "alternative_donor.294"; gene_name "CUFF.1968"; flanks "79479490-,79479386^"; structure "1^,2^"; splice_chain "79479632^,79479490^";
chr17	juncbase	alternative_donor	79481573	79479386	.	-	.	gene_id "alternative_donor.295"; transcript_id "alternative_donor.295"; gene_name "CUFF.1968"; flanks "79481573-,79479386^"; structure "1^,2^"; splice_chain "79481573^,79479632^";
chr17	juncbase	alternative_donor	79490668	79479386	.	-	.	gene_id "alternative_donor.296"; transcript_id "alternative_donor.296"; gene_name "CUFF.1968"; flanks "79490668-,79479386^"; structure "1^,2^"; splice_chain "79490668^,79479632^";
chr17	juncbase	alternative_donor	79479760	79479386	.	-	.	gene_id "alternative_donor.297"; transcript_id "alternative_donor.297"; gene_name "CUFF.1968"; flanks "79479760-,79479386^"; structure "1^,2^"; splice_chain "79479760^,79479632^";
chr17	juncbase	alternative_donor	79479641	79479386	.	-	.	gene_id "alternative_donor.298"; transcript_id "alternative_donor.298"; gene_name "CUFF.1968"; flanks "79479641-,79479386^"; structure "1^,2^"; splice_chain "79479641^,79479632^";
chr17	juncbase	jcn_only_AA	29657516	29661856	.	+	.	gene_id "jcn_only_AA.419"; transcript_id "jcn_only_AA.419"; gene_name "CUFF.1912"; flanks "29657516-,29661856^"; structure "1-,2-"; splice_chain "29661682-,29661856-";
chr17	juncbase	intron_retention	61574346	61574498	.	+	.	gene_id "intron_retention.378"; transcript_id "intron_retention.378"; gene_name ""; flanks "61574346-,61574498^"; structure "0,1^2-"; splice_chain ",61574346^61574498-";
chr17	juncbase	intron_retention	80417948	80426640	.	+	.	gene_id "intron_retention.379"; transcript_id "intron_retention.379"; gene_name "CUFF.1977"; flanks "80417948-,80426640^"; structure "0,1^2-"; splice_chain ",80417948^80426640-";
chr17	juncbase	intron_retention	6353392	6353559	.	+	.	gene_id "intron_retention.380"; transcript_id "intron_retention.380"; gene_name "CUFF.1890"; flanks "6353392-,6353559^"; structure "0,1^2-"; splice_chain ",6353392^6353559-";
chr17	juncbase	intron_retention	1616997	1616219	.	-	.	gene_id "intron_retention.381"; transcript_id "intron_retention.381"; gene_name ""; flanks "1616997-,1616219^"; structure "0,1^2-"; splice_chain ",1616997^1616219-";
chr17	juncbase	jcn_only_AD	61554704	61555292	.	+	.	gene_id "jcn_only_AD.391"; transcript_id "jcn_only_AD.391"; gene_name "CUFF.1942"; flanks "61554704-,61555292^"; structure "1^,2^"; splice_chain "61554704^,61555151^";
chr17	juncbase	jcn_only_AD	61568729	61571283	.	+	.	gene_id "jcn_only_AD.392"; transcript_id "jcn_only_AD.392"; gene_name "CUFF.1942"; flanks "61568729-,61571283^"; structure "1^,2^"; splice_chain "61567389^,61568729^";
chr17	juncbase	jcn_only_AD	61571020	61571283	.	+	.	gene_id "jcn_only_AD.393"; transcript_id "jcn_only_AD.393"; gene_name "CUFF.1942"; flanks "61571020-,61571283^"; structure "1^,2^"; splice_chain "61567389^,61571020^";
chr17	juncbase	jcn_only_AA	79995423	79995507	.	-	.	gene_id "jcn_only_AA.420"; transcript_id "jcn_only_AA.420"; gene_name "CUFF.1975"; flanks "79995423-,79995507^"; structure "1-,2-"; splice_chain "79995423-,79995417-";
chr17	juncbase	jcn_only_AA	79994889	79995507	.	-	.	gene_id "jcn_only_AA.421"; transcript_id "jcn_only_AA.421"; gene_name "CUFF.1975"; flanks "79994889-,79995507^"; structure "1-,2-"; splice_chain "79995417-,79994889-";
chr17	juncbase	jcn_only_AD	15584365	15584267	.	-	.	gene_id "jcn_only_AD.394"; transcript_id "jcn_only_AD.394"; gene_name "CUFF.1898"; flanks "15584365-,15584267^"; structure "1^,2^"; splice_chain "15586175^,15584365^";
chr17	juncbase	jcn_only_AD	15586350	15584267	.	-	.	gene_id "jcn_only_AD.395"; transcript_id "jcn_only_AD.395"; gene_name "CUFF.1898"; flanks "15586350-,15584267^"; structure "1^,2^"; splice_chain "15586350^,15586175^";
chr17	juncbase	jcn_only_AD	15586168	15584267	.	-	.	gene_id "jcn_only_AD.396"; transcript_id "jcn_only_AD.396"; gene_name "CUFF.1898"; flanks "15586168-,15584267^"; structure "1^,2^"; splice_chain "15586175^,15586168^";
chr17	juncbase	cassette	61907309	61907631	.	+	.	gene_id "cassette.253"; transcript_id "cassette.253"; gene_name "CUFF.1944"; flanks "61907309-,61907631^"; structure "0,1-2^"; splice_chain ",61907493-61907549^";
chr17	juncbase	jcn_only_AD	79478929	79478652	.	-	.	gene_id "jcn_only_AD.397"; transcript_id "jcn_only_AD.397"; gene_name "CUFF.1968"; flanks "79478929-,79478652^"; structure "1^,2^"; splice_chain "79478929^,79478789^";
chr17	juncbase	jcn_only_AA	80436794	80438283	.	+	.	gene_id "jcn_only_AA.422"; transcript_id "jcn_only_AA.422"; gene_name ""; flanks "80436794-,80438283^"; structure "1-,2-"; splice_chain "80438283-,80438958-";
chr17	juncbase	jcn_only_AA	80436794	80437814	.	+	.	gene_id "jcn_only_AA.423"; transcript_id "jcn_only_AA.423"; gene_name ""; flanks "80436794-,80437814^"; structure "1-,2-"; splice_chain "80437814-,80438958-";
chr17	juncbase	alternative_donor	79479490	79479386	.	-	.	gene_id "alternative_donor.299"; transcript_id "alternative_donor.299"; gene_name "CUFF.1968"; flanks "79479490-,79479386^"; structure "1^,2^"; splice_chain "79490668^,79479490^";
chr17	juncbase	alternative_donor	79481573	79479386	.	-	.	gene_id "alternative_donor.300"; transcript_id "alternative_donor.300"; gene_name "CUFF.1968"; flanks "79481573-,79479386^"; structure "1^,2^"; splice_chain "79490668^,79481573^";
chr17	juncbase	alternative_donor	79479760	79479386	.	-	.	gene_id "alternative_donor.301"; transcript_id "alternative_donor.301"; gene_name "CUFF.1968"; flanks "79479760-,79479386^"; structure "1^,2^"; splice_chain "79490668^,79479760^";
chr17	juncbase	alternative_donor	79479641	79479386	.	-	.	gene_id "alternative_donor.302"; transcript_id "alternative_donor.302"; gene_name "CUFF.1968"; flanks "79479641-,79479386^"; structure "1^,2^"; splice_chain "79490668^,79479641^";
chr17	juncbase	alternative_donor	79479632	79479386	.	-	.	gene_id "alternative_donor.303"; transcript_id "alternative_donor.303"; gene_name "CUFF.1968"; flanks "79479632-,79479386^"; structure "1^,2^"; splice_chain "79490668^,79479632^";
chr17	juncbase	intron_retention	79994290	79994184	.	-	.	gene_id "intron_retention.382"; transcript_id "intron_retention.382"; gene_name ""; flanks "79994290-,79994184^"; structure "0,1^2-"; splice_chain ",79994290^79994184-";
chr17	juncbase	alternative_acceptor	1616219	1616997	.	-	.	gene_id "alternative_acceptor.325"; transcript_id "alternative_acceptor.325"; gene_name "CUFF.1878"; flanks "1616219-,1616997^"; structure "1-,2-"; splice_chain "1616219-,1616198-";
chr17	juncbase	alternative_acceptor	1615693	1616997	.	-	.	gene_id "alternative_acceptor.326"; transcript_id "alternative_acceptor.326"; gene_name "CUFF.1878"; flanks "1615693-,1616997^"; structure "1-,2-"; splice_chain "1616198-,1615693-";
chr17	juncbase	alternative_acceptor	1616189	1616997	.	-	.	gene_id "alternative_acceptor.327"; transcript_id "alternative_acceptor.327"; gene_name "CUFF.1878"; flanks "1616189-,1616997^"; structure "1-,2-"; splice_chain "1616198-,1616189-";
chr17	juncbase	alternative_acceptor	1616349	1616997	.	-	.	gene_id "alternative_acceptor.328"; transcript_id "alternative_acceptor.328"; gene_name "CUFF.1878"; flanks "1616349-,1616997^"; structure "1-,2-"; splice_chain "1616349-,1616198-";
chr17	juncbase	intron_retention	25969374	25972340	.	+	.	gene_id "intron_retention.383"; transcript_id "intron_retention.383"; gene_name ""; flanks "25969374-,25972340^"; structure "0,1^2-"; splice_chain ",25969374^25972340-";
chr17	juncbase	alternative_acceptor	79250933	79254409	.	-	.	gene_id "alternative_acceptor.329"; transcript_id "alternative_acceptor.329"; gene_name "CUFF.1964"; flanks "79250933-,79254409^"; structure "1-,2-"; splice_chain "79253960-,79250933-";
chr17	juncbase	alternative_donor	15586350	15584267	.	-	.	gene_id "alternative_donor.304"; transcript_id "alternative_donor.304"; gene_name "CUFF.1898"; flanks "15586350-,15584267^"; structure "1^,2^"; splice_chain "15586350^,15584365^";
chr17	juncbase	alternative_donor	15586175	15584267	.	-	.	gene_id "alternative_donor.305"; transcript_id "alternative_donor.305"; gene_name "CUFF.1898"; flanks "15586175-,15584267^"; structure "1^,2^"; splice_chain "15586175^,15584365^";
chr17	juncbase	alternative_donor	15586168	15584267	.	-	.	gene_id "alternative_donor.306"; transcript_id "alternative_donor.306"; gene_name "CUFF.1898"; flanks "15586168-,15584267^"; structure "1^,2^"; splice_chain "15586168^,15584365^";
chr17	juncbase	alternative_donor	80439087	80441592	.	+	.	gene_id "alternative_donor.307"; transcript_id "alternative_donor.307"; gene_name "CUFF.1977"; flanks "80439087-,80441592^"; structure "1^,2^"; splice_chain "80439087^,80441180^";
chr17	juncbase	jcn_only_AD	29592357	29652838	.	+	.	gene_id "jcn_only_AD.398"; transcript_id "jcn_only_AD.398"; gene_name "CUFF.1912"; flanks "29592357-,29652838^"; structure "1^,2^"; splice_chain "29592357^,29626624^";
chr17	juncbase	jcn_only_AD	29645582	29652838	.	+	.	gene_id "jcn_only_AD.399"; transcript_id "jcn_only_AD.399"; gene_name "CUFF.1912"; flanks "29645582-,29652838^"; structure "1^,2^"; splice_chain "29626624^,29645582^";
chr17	juncbase	jcn_only_AA	18604758	18625550	.	+	.	gene_id "jcn_only_AA.424"; transcript_id "jcn_only_AA.424"; gene_name ""; flanks "18604758-,18625550^"; structure "1-,2-"; splice_chain "18607932-,18625550-";
chr17	juncbase	jcn_only_AD	61905569	61907212	.	+	.	gene_id "jcn_only_AD.400"; transcript_id "jcn_only_AD.400"; gene_name "CUFF.1944"; flanks "61905569-,61907212^"; structure "1^,2^"; splice_chain "61905569^,61906923^";
chr17	juncbase	jcn_only_AA	1616349	1617150	.	-	.	gene_id "jcn_only_AA.425"; transcript_id "jcn_only_AA.425"; gene_name "CUFF.1878"; flanks "1616349-,1617150^"; structure "1-,2-"; splice_chain "1616349-,1616189-";
chr17	juncbase	jcn_only_AA	1616198	1617150	.	-	.	gene_id "jcn_only_AA.426"; transcript_id "jcn_only_AA.426"; gene_name "CUFF.1878"; flanks "1616198-,1617150^"; structure "1-,2-"; splice_chain "1616198-,1616189-";
chr17	juncbase	jcn_only_AA	1615693	1617150	.	-	.	gene_id "jcn_only_AA.427"; transcript_id "jcn_only_AA.427"; gene_name "CUFF.1878"; flanks "1615693-,1617150^"; structure "1-,2-"; splice_chain "1616189-,1615693-";
chr17	juncbase	jcn_only_AA	1615940	1617150	.	-	.	gene_id "jcn_only_AA.428"; transcript_id "jcn_only_AA.428"; gene_name "CUFF.1878"; flanks "1615940-,1617150^"; structure "1-,2-"; splice_chain "1616189-,1615940-";
chr17	juncbase	alternative_donor	61562330	61562597	.	+	.	gene_id "alternative_donor.308"; transcript_id "alternative_donor.308"; gene_name "CUFF.1942"; flanks "61562330-,61562597^"; structure "1^,2^"; splice_chain "61561902^,61562330^";
chr17	juncbase	alternative_donor	61562427	61562597	.	+	.	gene_id "alternative_donor.309"; transcript_id "alternative_donor.309"; gene_name "CUFF.1942"; flanks "61562427-,61562597^"; structure "1^,2^"; splice_chain "61561902^,61562427^";
chr17	juncbase	alternative_donor	15584365	15584267	.	-	.	gene_id "alternative_donor.310"; transcript_id "alternative_donor.310"; gene_name "CUFF.1898"; flanks "15584365-,15584267^"; structure "1^,2^"; splice_chain "15586175^,15584365^";
chr17	juncbase	alternative_donor	15586350	15584267	.	-	.	gene_id "alternative_donor.311"; transcript_id "alternative_donor.311"; gene_name "CUFF.1898"; flanks "15586350-,15584267^"; structure "1^,2^"; splice_chain "15586350^,15586175^";
chr17	juncbase	alternative_donor	15586168	15584267	.	-	.	gene_id "alternative_donor.312"; transcript_id "alternative_donor.312"; gene_name "CUFF.1898"; flanks "15586168-,15584267^"; structure "1^,2^"; splice_chain "15586175^,15586168^";
chr17	juncbase	intron_retention	40739852	40738909	.	-	.	gene_id "intron_retention.384"; transcript_id "intron_retention.384"; gene_name "CUFF.1924"; flanks "40739852-,40738909^"; structure "0,1^2-"; splice_chain ",40739852^40738909-";
chr17	juncbase	alternative_acceptor	80416706	80417876	.	+	.	gene_id "alternative_acceptor.330"; transcript_id "alternative_acceptor.330"; gene_name "CUFF.1881"; flanks "80416706-,80417876^"; structure "1-,2-"; splice_chain "80417868-,80417876-";
chr17	juncbase	alternative_donor	79225293	79220861	.	-	.	gene_id "alternative_donor.313"; transcript_id "alternative_donor.313"; gene_name "CUFF.1964"; flanks "79225293-,79220861^"; structure "1^,2^"; splice_chain "79225293^,79223870^";
chr17	juncbase	alternative_acceptor	61905283	61905498	.	+	.	gene_id "alternative_acceptor.331"; transcript_id "alternative_acceptor.331"; gene_name ""; flanks "61905283-,61905498^"; structure "1-,2-"; splice_chain "61905479-,61905498-";
chr17	juncbase	alternative_donor	79895138	79894737	.	-	.	gene_id "alternative_donor.314"; transcript_id "alternative_donor.314"; gene_name "CUFF.1972"; flanks "79895138-,79894737^"; structure "1^,2^"; splice_chain "79895404^,79895138^";
chr17	juncbase	alternative_donor	79895134	79894737	.	-	.	gene_id "alternative_donor.315"; transcript_id "alternative_donor.315"; gene_name "CUFF.1972"; flanks "79895134-,79894737^"; structure "1^,2^"; splice_chain "79895404^,79895134^";
chr17	juncbase	alternative_donor	79895056	79894737	.	-	.	gene_id "alternative_donor.316"; transcript_id "alternative_donor.316"; gene_name "CUFF.1972"; flanks "79895056-,79894737^"; structure "1^,2^"; splice_chain "79895404^,79895056^";
chr17	juncbase	alternative_donor	79895069	79894737	.	-	.	gene_id "alternative_donor.317"; transcript_id "alternative_donor.317"; gene_name "CUFF.1972"; flanks "79895069-,79894737^"; structure "1^,2^"; splice_chain "79895404^,79895069^";
chr17	juncbase	alternative_donor	79894846	79894737	.	-	.	gene_id "alternative_donor.318"; transcript_id "alternative_donor.318"; gene_name "CUFF.1972"; flanks "79894846-,79894737^"; structure "1^,2^"; splice_chain "79895404^,79894846^";
chr17	juncbase	alternative_donor	79895104	79894737	.	-	.	gene_id "alternative_donor.319"; transcript_id "alternative_donor.319"; gene_name "CUFF.1972"; flanks "79895104-,79894737^"; structure "1^,2^"; splice_chain "79895404^,79895104^";
chr17	juncbase	intron_retention	61906923	61907212	.	+	.	gene_id "intron_retention.385"; transcript_id "intron_retention.385"; gene_name "CUFF.1944"; flanks "61906923-,61907212^"; structure "0,1^2-"; splice_chain ",61906923^61907212-";
chr17	juncbase	jcn_only_AD	80436794	80438958	.	+	.	gene_id "jcn_only_AD.401"; transcript_id "jcn_only_AD.401"; gene_name "CUFF.1977"; flanks "80436794-,80438958^"; structure "1^,2^"; splice_chain "80436794^,80438420^";
chr17	juncbase	jcn_only_AA	29592357	29652838	.	+	.	gene_id "jcn_only_AA.429"; transcript_id "jcn_only_AA.429"; gene_name "CUFF.1912"; flanks "29592357-,29652838^"; structure "1-,2-"; splice_chain "29626528-,29652838-";
chr17	juncbase	intron_retention	61568729	61571283	.	+	.	gene_id "intron_retention.386"; transcript_id "intron_retention.386"; gene_name ""; flanks "61568729-,61571283^"; structure "0,1^2-"; splice_chain ",61568729^61571283-";
chr17	juncbase	intron_retention	1945169	1946270	.	+	.	gene_id "intron_retention.387"; transcript_id "intron_retention.387"; gene_name ""; flanks "1945169-,1946270^"; structure "0,1^2-"; splice_chain ",1945169^1946270-";
chr17	juncbase	intron_retention	61907549	61907631	.	+	.	gene_id "intron_retention.388"; transcript_id "intron_retention.388"; gene_name "CUFF.1944"; flanks "61907549-,61907631^"; structure "0,1^2-"; splice_chain ",61907549^61907631-";
chr17	juncbase	intron_retention	1616997	1616198	.	-	.	gene_id "intron_retention.389"; transcript_id "intron_retention.389"; gene_name ""; flanks "1616997-,1616198^"; structure "0,1^2-"; splice_chain ",1616997^1616198-";
chr17	juncbase	intron_retention	61905569	61906854	.	+	.	gene_id "intron_retention.390"; transcript_id "intron_retention.390"; gene_name ""; flanks "61905569-,61906854^"; structure "0,1^2-"; splice_chain ",61905569^61906854-";
chr17	juncbase	jcn_only_AA	80442806	80446097	.	+	.	gene_id "jcn_only_AA.430"; transcript_id "jcn_only_AA.430"; gene_name ""; flanks "80442806-,80446097^"; structure "1-,2-"; splice_chain "80443373-,80446097-";
chr17	juncbase	cassette	79249769	79244824	.	-	.	gene_id "cassette.254"; transcript_id "cassette.254"; gene_name "CUFF.1964"; flanks "79249769-,79244824^"; structure "0,1-2^"; splice_chain ",79246427-79246316^";
chr17	juncbase	alternative_acceptor	33640725	33648756	.	+	.	gene_id "alternative_acceptor.332"; transcript_id "alternative_acceptor.332"; gene_name "CUFF.1917"; flanks "33640725-,33648756^"; structure "1-,2-"; splice_chain "33648754-,33648756-";
chr17	juncbase	jcn_only_AD	79898626	79894069	.	-	.	gene_id "jcn_only_AD.402"; transcript_id "jcn_only_AD.402"; gene_name ""; flanks "79898626-,79894069^"; structure "1^,2^"; splice_chain "79898626^,79894624^";
chr17	juncbase	jcn_only_AD	79900172	79894069	.	-	.	gene_id "jcn_only_AD.403"; transcript_id "jcn_only_AD.403"; gene_name ""; flanks "79900172-,79894069^"; structure "1^,2^"; splice_chain "79900172^,79894624^";
chr17	juncbase	jcn_only_AA	56081079	56082284	.	-	.	gene_id "jcn_only_AA.431"; transcript_id "jcn_only_AA.431"; gene_name "CUFF.1936"; flanks "56081079-,56082284^"; structure "1-,2-"; splice_chain "56081362-,56081079-";
chr17	juncbase	jcn_only_AD	79269222	79263608	.	-	.	gene_id "jcn_only_AD.404"; transcript_id "jcn_only_AD.404"; gene_name ""; flanks "79269222-,79263608^"; structure "1^,2^"; splice_chain "79269222^,79268623^";
chr17	juncbase	alternative_acceptor	79220040	79220685	.	-	.	gene_id "alternative_acceptor.333"; transcript_id "alternative_acceptor.333"; gene_name "CUFF.1964"; flanks "79220040-,79220685^"; structure "1-,2-"; splice_chain "79220473-,79220040-";
chr17	juncbase	intron_retention	15587510	15586685	.	-	.	gene_id "intron_retention.391"; transcript_id "intron_retention.391"; gene_name ""; flanks "15587510-,15586685^"; structure "0,1^2-"; splice_chain ",15587510^15586685-";
chr17	juncbase	alternative_acceptor	25967799	25969264	.	+	.	gene_id "alternative_acceptor.334"; transcript_id "alternative_acceptor.334"; gene_name "CUFF.1908"; flanks "25967799-,25969264^"; structure "1-,2-"; splice_chain "25967991-,25969264-";
chr17	juncbase	intron_retention	79994260	79994184	.	-	.	gene_id "intron_retention.392"; transcript_id "intron_retention.392"; gene_name ""; flanks "79994260-,79994184^"; structure "0,1^2-"; splice_chain ",79994260^79994184-";
chr17	juncbase	alternative_acceptor	6353392	6353682	.	+	.	gene_id "alternative_acceptor.335"; transcript_id "alternative_acceptor.335"; gene_name "CUFF.1890"; flanks "6353392-,6353682^"; structure "1-,2-"; splice_chain "6353559-,6353682-";
chr17	juncbase	intron_retention	42340220	42340094	.	-	.	gene_id "intron_retention.393"; transcript_id "intron_retention.393"; gene_name "CUFF.1928"; flanks "42340220-,42340094^"; structure "0,1^2-"; splice_chain ",42340220^42340094-";
chr17	juncbase	jcn_only_AA	15498140	15499828	.	-	.	gene_id "jcn_only_AA.432"; transcript_id "jcn_only_AA.432"; gene_name "CUFF.1899"; flanks "15498140-,15499828^"; structure "1-,2-"; splice_chain "15498204-,15498140-";
chr17	juncbase	cassette	77005746	76996352	.	-	.	gene_id "cassette.255"; transcript_id "cassette.255"; gene_name "CUFF.1960"; flanks "77005746-,76996352^"; structure "0,1-2^"; splice_chain ",77001563-77001454^";
chr17	juncbase	cassette	77005746	76994045	.	-	.	gene_id "cassette.256"; transcript_id "cassette.256"; gene_name "CUFF.1960"; flanks "77005746-,76994045^"; structure "0,1-2^"; splice_chain ",77001563-77001454^";
chr17	juncbase	jcn_only_AA	1616219	1616997	.	-	.	gene_id "jcn_only_AA.433"; transcript_id "jcn_only_AA.433"; gene_name "CUFF.1878"; flanks "1616219-,1616997^"; structure "1-,2-"; splice_chain "1616219-,1616198-";
chr17	juncbase	jcn_only_AA	1615693	1616997	.	-	.	gene_id "jcn_only_AA.434"; transcript_id "jcn_only_AA.434"; gene_name "CUFF.1878"; flanks "1615693-,1616997^"; structure "1-,2-"; splice_chain "1616198-,1615693-";
chr17	juncbase	jcn_only_AA	1616189	1616997	.	-	.	gene_id "jcn_only_AA.435"; transcript_id "jcn_only_AA.435"; gene_name "CUFF.1878"; flanks "1616189-,1616997^"; structure "1-,2-"; splice_chain "1616198-,1616189-";
chr17	juncbase	jcn_only_AA	1616349	1616997	.	-	.	gene_id "jcn_only_AA.436"; transcript_id "jcn_only_AA.436"; gene_name "CUFF.1878"; flanks "1616349-,1616997^"; structure "1-,2-"; splice_chain "1616349-,1616198-";
chr17	juncbase	jcn_only_AA	15580996	15584179	.	-	.	gene_id "jcn_only_AA.437"; transcript_id "jcn_only_AA.437"; gene_name "CUFF.1898"; flanks "15580996-,15584179^"; structure "1-,2-"; splice_chain "15580996-,15580594-";
chr17	juncbase	jcn_only_AA	15581035	15584179	.	-	.	gene_id "jcn_only_AA.438"; transcript_id "jcn_only_AA.438"; gene_name "CUFF.1898"; flanks "15581035-,15584179^"; structure "1-,2-"; splice_chain "15581035-,15580594-";
chr17	juncbase	jcn_only_AA	15562190	15584179	.	-	.	gene_id "jcn_only_AA.439"; transcript_id "jcn_only_AA.439"; gene_name "CUFF.1898"; flanks "15562190-,15584179^"; structure "1-,2-"; splice_chain "15580594-,15562190-";
chr17	juncbase	jcn_only_AA	15557745	15584179	.	-	.	gene_id "jcn_only_AA.440"; transcript_id "jcn_only_AA.440"; gene_name "CUFF.1898"; flanks "15557745-,15584179^"; structure "1-,2-"; splice_chain "15580594-,15557745-";
chr17	juncbase	jcn_only_AA	15546130	15584179	.	-	.	gene_id "jcn_only_AA.441"; transcript_id "jcn_only_AA.441"; gene_name "CUFF.1898"; flanks "15546130-,15584179^"; structure "1-,2-"; splice_chain "15580594-,15546130-";
chr17	juncbase	cassette	66287227	66274468	.	-	.	gene_id "cassette.257"; transcript_id "cassette.257"; gene_name "CUFF.1953"; flanks "66287227-,66274468^"; structure "0,1-2^"; splice_chain ",66279264-66279138^";
chr17	juncbase	alternative_donor	79895138	79894737	.	-	.	gene_id "alternative_donor.320"; transcript_id "alternative_donor.320"; gene_name "CUFF.1972"; flanks "79895138-,79894737^"; structure "1^,2^"; splice_chain "79895138^,79895104^";
chr17	juncbase	alternative_donor	79895404	79894737	.	-	.	gene_id "alternative_donor.321"; transcript_id "alternative_donor.321"; gene_name "CUFF.1972"; flanks "79895404-,79894737^"; structure "1^,2^"; splice_chain "79895404^,79895104^";
chr17	juncbase	alternative_donor	79895134	79894737	.	-	.	gene_id "alternative_donor.322"; transcript_id "alternative_donor.322"; gene_name "CUFF.1972"; flanks "79895134-,79894737^"; structure "1^,2^"; splice_chain "79895134^,79895104^";
chr17	juncbase	alternative_donor	79895056	79894737	.	-	.	gene_id "alternative_donor.323"; transcript_id "alternative_donor.323"; gene_name "CUFF.1972"; flanks "79895056-,79894737^"; structure "1^,2^"; splice_chain "79895104^,79895056^";
chr17	juncbase	alternative_donor	79895069	79894737	.	-	.	gene_id "alternative_donor.324"; transcript_id "alternative_donor.324"; gene_name "CUFF.1972"; flanks "79895069-,79894737^"; structure "1^,2^"; splice_chain "79895104^,79895069^";
chr17	juncbase	alternative_donor	79894846	79894737	.	-	.	gene_id "alternative_donor.325"; transcript_id "alternative_donor.325"; gene_name "CUFF.1972"; flanks "79894846-,79894737^"; structure "1^,2^"; splice_chain "79895104^,79894846^";
chr17	juncbase	alternative_donor	61568729	61571283	.	+	.	gene_id "alternative_donor.326"; transcript_id "alternative_donor.326"; gene_name "CUFF.1942"; flanks "61568729-,61571283^"; structure "1^,2^"; splice_chain "61567389^,61568729^";
chr17	juncbase	alternative_donor	61571020	61571283	.	+	.	gene_id "alternative_donor.327"; transcript_id "alternative_donor.327"; gene_name "CUFF.1942"; flanks "61571020-,61571283^"; structure "1^,2^"; splice_chain "61567389^,61571020^";
chr17	juncbase	alternative_donor	61554704	61555292	.	+	.	gene_id "alternative_donor.328"; transcript_id "alternative_donor.328"; gene_name "CUFF.1942"; flanks "61554704-,61555292^"; structure "1^,2^"; splice_chain "61554704^,61555151^";
chr17	juncbase	intron_retention	79895134	79894737	.	-	.	gene_id "intron_retention.394"; transcript_id "intron_retention.394"; gene_name ""; flanks "79895134-,79894737^"; structure "0,1^2-"; splice_chain ",79895134^79894737-";
chr17	juncbase	jcn_only_AD	79479490	79479386	.	-	.	gene_id "jcn_only_AD.405"; transcript_id "jcn_only_AD.405"; gene_name "CUFF.1968"; flanks "79479490-,79479386^"; structure "1^,2^"; splice_chain "79481573^,79479490^";
chr17	juncbase	jcn_only_AD	79490668	79479386	.	-	.	gene_id "jcn_only_AD.406"; transcript_id "jcn_only_AD.406"; gene_name "CUFF.1968"; flanks "79490668-,79479386^"; structure "1^,2^"; splice_chain "79490668^,79481573^";
chr17	juncbase	jcn_only_AD	79479760	79479386	.	-	.	gene_id "jcn_only_AD.407"; transcript_id "jcn_only_AD.407"; gene_name "CUFF.1968"; flanks "79479760-,79479386^"; structure "1^,2^"; splice_chain "79481573^,79479760^";
chr17	juncbase	jcn_only_AD	79479641	79479386	.	-	.	gene_id "jcn_only_AD.408"; transcript_id "jcn_only_AD.408"; gene_name "CUFF.1968"; flanks "79479641-,79479386^"; structure "1^,2^"; splice_chain "79481573^,79479641^";
chr17	juncbase	jcn_only_AD	79479632	79479386	.	-	.	gene_id "jcn_only_AD.409"; transcript_id "jcn_only_AD.409"; gene_name "CUFF.1968"; flanks "79479632-,79479386^"; structure "1^,2^"; splice_chain "79481573^,79479632^";
chr17	juncbase	intron_retention	1616997	1616189	.	-	.	gene_id "intron_retention.395"; transcript_id "intron_retention.395"; gene_name ""; flanks "1616997-,1616189^"; structure "0,1^2-"; splice_chain ",1616997^1616189-";
chr17	juncbase	alternative_acceptor	29657516	29661856	.	+	.	gene_id "alternative_acceptor.336"; transcript_id "alternative_acceptor.336"; gene_name "CUFF.1912"; flanks "29657516-,29661856^"; structure "1-,2-"; splice_chain "29661682-,29661856-";
chr17	juncbase	jcn_only_AA	1617308	1617665	.	-	.	gene_id "jcn_only_AA.442"; transcript_id "jcn_only_AA.442"; gene_name "CUFF.1878"; flanks "1617308-,1617665^"; structure "1-,2-"; splice_chain "1617339-,1617308-";
chr17	juncbase	jcn_only_AA	79995423	79995507	.	-	.	gene_id "jcn_only_AA.443"; transcript_id "jcn_only_AA.443"; gene_name "CUFF.1975"; flanks "79995423-,79995507^"; structure "1-,2-"; splice_chain "79995423-,79994889-";
chr17	juncbase	jcn_only_AA	79995417	79995507	.	-	.	gene_id "jcn_only_AA.444"; transcript_id "jcn_only_AA.444"; gene_name "CUFF.1975"; flanks "79995417-,79995507^"; structure "1-,2-"; splice_chain "79995417-,79994889-";
chr17	juncbase	alternative_acceptor	6352727	6353682	.	+	.	gene_id "alternative_acceptor.337"; transcript_id "alternative_acceptor.337"; gene_name "CUFF.1890"; flanks "6352727-,6353682^"; structure "1-,2-"; splice_chain "6353348-,6353682-";
chr17	juncbase	intron_retention	29684108	29684287	.	+	.	gene_id "intron_retention.396"; transcript_id "intron_retention.396"; gene_name "CUFF.1912"; flanks "29684108-,29684287^"; structure "0,1^2-"; splice_chain ",29684108^29684287-";
chr17	juncbase	cassette	15611561	15638244	.	+	.	gene_id "cassette.258"; transcript_id "cassette.258"; gene_name "CUFF.1900"; flanks "15611561-,15638244^"; structure "0,1-2^"; splice_chain ",15619373-15620627^";
chr17	juncbase	jcn_only_AA	57756905	57784732	.	-	.	gene_id "jcn_only_AA.445"; transcript_id "jcn_only_AA.445"; gene_name "CUFF.1939"; flanks "57756905-,57784732^"; structure "1-,2-"; splice_chain "57777237-,57756905-";
chr17	juncbase	jcn_only_AA	57775339	57784732	.	-	.	gene_id "jcn_only_AA.446"; transcript_id "jcn_only_AA.446"; gene_name "CUFF.1939"; flanks "57775339-,57784732^"; structure "1-,2-"; splice_chain "57777237-,57775339-";
chr17	juncbase	jcn_only_AA	57777550	57784732	.	-	.	gene_id "jcn_only_AA.447"; transcript_id "jcn_only_AA.447"; gene_name "CUFF.1939"; flanks "57777550-,57784732^"; structure "1-,2-"; splice_chain "57777550-,57777237-";
chr17	juncbase	jcn_only_AD	61562330	61562597	.	+	.	gene_id "jcn_only_AD.410"; transcript_id "jcn_only_AD.410"; gene_name "CUFF.1942"; flanks "61562330-,61562597^"; structure "1^,2^"; splice_chain "61562330^,61562427^";
chr17	juncbase	jcn_only_AD	61561902	61562597	.	+	.	gene_id "jcn_only_AD.411"; transcript_id "jcn_only_AD.411"; gene_name "CUFF.1942"; flanks "61561902-,61562597^"; structure "1^,2^"; splice_chain "61561902^,61562427^";
chr17	juncbase	alternative_donor	29657516	29661856	.	+	.	gene_id "alternative_donor.329"; transcript_id "alternative_donor.329"; gene_name "CUFF.1912"; flanks "29657516-,29661856^"; structure "1^,2^"; splice_chain "29657516^,29661748^";
chr17	juncbase	jcn_only_AA	5405192	5421066	.	-	.	gene_id "jcn_only_AA.448"; transcript_id "jcn_only_AA.448"; gene_name "CUFF.1889"; flanks "5405192-,5421066^"; structure "1-,2-"; splice_chain "5418837-,5405192-";
chr17	juncbase	jcn_only_AA	5409297	5421066	.	-	.	gene_id "jcn_only_AA.449"; transcript_id "jcn_only_AA.449"; gene_name "CUFF.1889"; flanks "5409297-,5421066^"; structure "1-,2-"; splice_chain "5418837-,5409297-";
chr17	juncbase	alternative_donor	1937136	1939264	.	+	.	gene_id "alternative_donor.330"; transcript_id "alternative_donor.330"; gene_name "CUFF.1881"; flanks "1937136-,1939264^"; structure "1^,2^"; splice_chain "1937136^,1938314^";
chr17	juncbase	intron_retention	1617150	1615940	.	-	.	gene_id "intron_retention.397"; transcript_id "intron_retention.397"; gene_name ""; flanks "1617150-,1615940^"; structure "0,1^2-"; splice_chain ",1617150^1615940-";
chr17	juncbase	jcn_only_AA	61904874	61905034	.	+	.	gene_id "jcn_only_AA.450"; transcript_id "jcn_only_AA.450"; gene_name "CUFF.1944"; flanks "61904874-,61905034^"; structure "1-,2-"; splice_chain "61905034-,61905479-";
chr17	juncbase	jcn_only_AA	61904874	61905211	.	+	.	gene_id "jcn_only_AA.451"; transcript_id "jcn_only_AA.451"; gene_name "CUFF.1944"; flanks "61904874-,61905211^"; structure "1-,2-"; splice_chain "61905211-,61905479-";
chr17	juncbase	jcn_only_AA	61904874	61905189	.	+	.	gene_id "jcn_only_AA.452"; transcript_id "jcn_only_AA.452"; gene_name "CUFF.1944"; flanks "61904874-,61905189^"; structure "1-,2-"; splice_chain "61905189-,61905479-";
chr17	juncbase	jcn_only_AA	61904874	61905498	.	+	.	gene_id "jcn_only_AA.453"; transcript_id "jcn_only_AA.453"; gene_name "CUFF.1944"; flanks "61904874-,61905498^"; structure "1-,2-"; splice_chain "61905479-,61905498-";
chr17	juncbase	intron_retention	61573784	61574894	.	+	.	gene_id "intron_retention.398"; transcript_id "intron_retention.398"; gene_name ""; flanks "61573784-,61574894^"; structure "0,1^2-"; splice_chain ",61573784^61574894-";
chr17	juncbase	intron_retention	35307564	35311098	.	+	.	gene_id "intron_retention.399"; transcript_id "intron_retention.399"; gene_name ""; flanks "35307564-,35311098^"; structure "0,1^2-"; splice_chain ",35307564^35311098-";
chr17	juncbase	jcn_only_AD	79995507	79994889	.	-	.	gene_id "jcn_only_AD.412"; transcript_id "jcn_only_AD.412"; gene_name "CUFF.1975"; flanks "79995507-,79994889^"; structure "1^,2^"; splice_chain "79995507^,79995490^";
chr17	juncbase	jcn_only_AD	79995326	79994889	.	-	.	gene_id "jcn_only_AD.413"; transcript_id "jcn_only_AD.413"; gene_name "CUFF.1975"; flanks "79995326-,79994889^"; structure "1^,2^"; splice_chain "79995490^,79995326^";
chr17	juncbase	jcn_only_AD	29706375	29708891	.	+	.	gene_id "jcn_only_AD.414"; transcript_id "jcn_only_AD.414"; gene_name ""; flanks "29706375-,29708891^"; structure "1^,2^"; splice_chain "29706375^,29707245^";
chr17	juncbase	jcn_only_AD	29706041	29708891	.	+	.	gene_id "jcn_only_AD.415"; transcript_id "jcn_only_AD.415"; gene_name ""; flanks "29706041-,29708891^"; structure "1^,2^"; splice_chain "29706041^,29707245^";
chr17	juncbase	alternative_acceptor	80436794	80438283	.	+	.	gene_id "alternative_acceptor.338"; transcript_id "alternative_acceptor.338"; gene_name ""; flanks "80436794-,80438283^"; structure "1-,2-"; splice_chain "80438283-,80438958-";
chr17	juncbase	alternative_acceptor	80436794	80437814	.	+	.	gene_id "alternative_acceptor.339"; transcript_id "alternative_acceptor.339"; gene_name ""; flanks "80436794-,80437814^"; structure "1-,2-"; splice_chain "80437814-,80438958-";
chr17	juncbase	intron_retention	8648147	8648038	.	-	.	gene_id "intron_retention.400"; transcript_id "intron_retention.400"; gene_name "CUFF.1895"; flanks "8648147-,8648038^"; structure "0,1^2-"; splice_chain ",8648147^8648038-";
chr17	juncbase	alternative_donor	1617150	1616198	.	-	.	gene_id "alternative_donor.331"; transcript_id "alternative_donor.331"; gene_name ""; flanks "1617150-,1616198^"; structure "1^,2^"; splice_chain "1617150^,1616997^";
chr17	juncbase	jcn_only_AA	61908295	61908396	.	+	.	gene_id "jcn_only_AA.454"; transcript_id "jcn_only_AA.454"; gene_name "CUFF.1944"; flanks "61908295-,61908396^"; structure "1-,2-"; splice_chain "61908380-,61908396-";
chr17	juncbase	intron_retention	66526142	66526418	.	+	.	gene_id "intron_retention.401"; transcript_id "intron_retention.401"; gene_name ""; flanks "66526142-,66526418^"; structure "0,1^2-"; splice_chain ",66526142^66526418-";
chr17	juncbase	jcn_only_AD	79479490	79479386	.	-	.	gene_id "jcn_only_AD.416"; transcript_id "jcn_only_AD.416"; gene_name "CUFF.1968"; flanks "79479490-,79479386^"; structure "1^,2^"; splice_chain "79490668^,79479490^";
chr17	juncbase	jcn_only_AD	79481573	79479386	.	-	.	gene_id "jcn_only_AD.417"; transcript_id "jcn_only_AD.417"; gene_name "CUFF.1968"; flanks "79481573-,79479386^"; structure "1^,2^"; splice_chain "79490668^,79481573^";
chr17	juncbase	jcn_only_AD	79479760	79479386	.	-	.	gene_id "jcn_only_AD.418"; transcript_id "jcn_only_AD.418"; gene_name "CUFF.1968"; flanks "79479760-,79479386^"; structure "1^,2^"; splice_chain "79490668^,79479760^";
chr17	juncbase	jcn_only_AD	79479641	79479386	.	-	.	gene_id "jcn_only_AD.419"; transcript_id "jcn_only_AD.419"; gene_name "CUFF.1968"; flanks "79479641-,79479386^"; structure "1^,2^"; splice_chain "79490668^,79479641^";
chr17	juncbase	jcn_only_AD	79479632	79479386	.	-	.	gene_id "jcn_only_AD.420"; transcript_id "jcn_only_AD.420"; gene_name "CUFF.1968"; flanks "79479632-,79479386^"; structure "1^,2^"; splice_chain "79490668^,79479632^";
chr17	juncbase	alternative_donor	6349507	6350783	.	+	.	gene_id "alternative_donor.332"; transcript_id "alternative_donor.332"; gene_name "CUFF.1890"; flanks "6349507-,6350783^"; structure "1^,2^"; splice_chain "6348724^,6349507^";
chr17	juncbase	alternative_donor	6348662	6350783	.	+	.	gene_id "alternative_donor.333"; transcript_id "alternative_donor.333"; gene_name "CUFF.1890"; flanks "6348662-,6350783^"; structure "1^,2^"; splice_chain "6348662^,6348724^";
chr17	juncbase	jcn_only_AA	79995417	79995507	.	-	.	gene_id "jcn_only_AA.455"; transcript_id "jcn_only_AA.455"; gene_name "CUFF.1975"; flanks "79995417-,79995507^"; structure "1-,2-"; splice_chain "79995423-,79995417-";
chr17	juncbase	jcn_only_AA	79994889	79995507	.	-	.	gene_id "jcn_only_AA.456"; transcript_id "jcn_only_AA.456"; gene_name "CUFF.1975"; flanks "79994889-,79995507^"; structure "1-,2-"; splice_chain "79995423-,79994889-";
chr17	juncbase	jcn_only_AA	80416706	80417876	.	+	.	gene_id "jcn_only_AA.457"; transcript_id "jcn_only_AA.457"; gene_name "CUFF.1881"; flanks "80416706-,80417876^"; structure "1-,2-"; splice_chain "80417868-,80417876-";
chr17	juncbase	jcn_only_AD	61904874	61905498	.	+	.	gene_id "jcn_only_AD.421"; transcript_id "jcn_only_AD.421"; gene_name "CUFF.1944"; flanks "61904874-,61905498^"; structure "1^,2^"; splice_chain "61904874^,61905283^";
chr17	juncbase	alternative_acceptor	1939385	1939823	.	+	.	gene_id "alternative_acceptor.340"; transcript_id "alternative_acceptor.340"; gene_name "CUFF.1881"; flanks "1939385-,1939823^"; structure "1-,2-"; splice_chain "1939723-,1939823-";
chr17	juncbase	jcn_only_AD	79898626	79894069	.	-	.	gene_id "jcn_only_AD.422"; transcript_id "jcn_only_AD.422"; gene_name "CUFF.1972"; flanks "79898626-,79894069^"; structure "1^,2^"; splice_chain "79900172^,79898626^";
chr17	juncbase	jcn_only_AD	79894624	79894069	.	-	.	gene_id "jcn_only_AD.423"; transcript_id "jcn_only_AD.423"; gene_name "CUFF.1972"; flanks "79894624-,79894069^"; structure "1^,2^"; splice_chain "79900172^,79894624^";
chr17	juncbase	intron_retention	79995507	79995417	.	-	.	gene_id "intron_retention.402"; transcript_id "intron_retention.402"; gene_name "CUFF.1975"; flanks "79995507-,79995417^"; structure "0,1^2-"; splice_chain ",79995507^79995417-";
chr17	juncbase	alternative_acceptor	80442806	80446097	.	+	.	gene_id "alternative_acceptor.341"; transcript_id "alternative_acceptor.341"; gene_name ""; flanks "80442806-,80446097^"; structure "1-,2-"; splice_chain "80443373-,80446097-";
chr17	juncbase	intron_retention	61904883	61904980	.	+	.	gene_id "intron_retention.403"; transcript_id "intron_retention.403"; gene_name "CUFF.1944"; flanks "61904883-,61904980^"; structure "0,1^2-"; splice_chain ",61904883^61904980-";
chr17	juncbase	alternative_acceptor	66524041	66525011	.	+	.	gene_id "alternative_acceptor.342"; transcript_id "alternative_acceptor.342"; gene_name "CUFF.1954"; flanks "66524041-,66525011^"; structure "1-,2-"; splice_chain "66524772-,66525011-";
chr17	juncbase	alternative_donor	79895138	79894737	.	-	.	gene_id "alternative_donor.334"; transcript_id "alternative_donor.334"; gene_name "CUFF.1972"; flanks "79895138-,79894737^"; structure "1^,2^"; splice_chain "79895138^,79895069^";
chr17	juncbase	alternative_donor	79895404	79894737	.	-	.	gene_id "alternative_donor.335"; transcript_id "alternative_donor.335"; gene_name "CUFF.1972"; flanks "79895404-,79894737^"; structure "1^,2^"; splice_chain "79895404^,79895069^";
chr17	juncbase	alternative_donor	79895134	79894737	.	-	.	gene_id "alternative_donor.336"; transcript_id "alternative_donor.336"; gene_name "CUFF.1972"; flanks "79895134-,79894737^"; structure "1^,2^"; splice_chain "79895134^,79895069^";
chr17	juncbase	alternative_donor	79895056	79894737	.	-	.	gene_id "alternative_donor.337"; transcript_id "alternative_donor.337"; gene_name "CUFF.1972"; flanks "79895056-,79894737^"; structure "1^,2^"; splice_chain "79895069^,79895056^";
chr17	juncbase	alternative_donor	79894846	79894737	.	-	.	gene_id "alternative_donor.338"; transcript_id "alternative_donor.338"; gene_name "CUFF.1972"; flanks "79894846-,79894737^"; structure "1^,2^"; splice_chain "79895069^,79894846^";
chr17	juncbase	alternative_donor	79895104	79894737	.	-	.	gene_id "alternative_donor.339"; transcript_id "alternative_donor.339"; gene_name "CUFF.1972"; flanks "79895104-,79894737^"; structure "1^,2^"; splice_chain "79895104^,79895069^";
chr17	juncbase	intron_retention	1944915	1945062	.	+	.	gene_id "intron_retention.404"; transcript_id "intron_retention.404"; gene_name "CUFF.1881"; flanks "1944915-,1945062^"; structure "0,1^2-"; splice_chain ",1944915^1945062-";
chr17	juncbase	jcn_only_AD	79994058	79993939	.	-	.	gene_id "jcn_only_AD.424"; transcript_id "jcn_only_AD.424"; gene_name "CUFF.1875,CUFF.1975"; flanks "79994058-,79993939^"; structure "1^,2^"; splice_chain "79994058^,79994023^";
chr17	juncbase	jcn_only_AD	79994067	79993939	.	-	.	gene_id "jcn_only_AD.425"; transcript_id "jcn_only_AD.425"; gene_name "CUFF.1875,CUFF.1975"; flanks "79994067-,79993939^"; structure "1^,2^"; splice_chain "79994067^,79994023^";
chr17	juncbase	jcn_only_AA	61904874	61905034	.	+	.	gene_id "jcn_only_AA.458"; transcript_id "jcn_only_AA.458"; gene_name "CUFF.1944"; flanks "61904874-,61905034^"; structure "1-,2-"; splice_chain "61905034-,61905211-";
chr17	juncbase	jcn_only_AA	61904874	61905189	.	+	.	gene_id "jcn_only_AA.459"; transcript_id "jcn_only_AA.459"; gene_name "CUFF.1944"; flanks "61904874-,61905189^"; structure "1-,2-"; splice_chain "61905189-,61905211-";
chr17	juncbase	jcn_only_AA	61904874	61905479	.	+	.	gene_id "jcn_only_AA.460"; transcript_id "jcn_only_AA.460"; gene_name "CUFF.1944"; flanks "61904874-,61905479^"; structure "1-,2-"; splice_chain "61905211-,61905479-";
chr17	juncbase	jcn_only_AA	61904874	61905498	.	+	.	gene_id "jcn_only_AA.461"; transcript_id "jcn_only_AA.461"; gene_name "CUFF.1944"; flanks "61904874-,61905498^"; structure "1-,2-"; splice_chain "61905211-,61905498-";
chr17	juncbase	jcn_only_AD	61571020	61571283	.	+	.	gene_id "jcn_only_AD.426"; transcript_id "jcn_only_AD.426"; gene_name "CUFF.1942"; flanks "61571020-,61571283^"; structure "1^,2^"; splice_chain "61568729^,61571020^";
chr17	juncbase	jcn_only_AD	61567389	61571283	.	+	.	gene_id "jcn_only_AD.427"; transcript_id "jcn_only_AD.427"; gene_name "CUFF.1942"; flanks "61567389-,61571283^"; structure "1^,2^"; splice_chain "61567389^,61568729^";
chr17	juncbase	intron_retention	40739852	40738155	.	-	.	gene_id "intron_retention.405"; transcript_id "intron_retention.405"; gene_name ""; flanks "40739852-,40738155^"; structure "0,1^2-"; splice_chain ",40739852^40738155-";
chr17	juncbase	alternative_donor	79479490	79479386	.	-	.	gene_id "alternative_donor.340"; transcript_id "alternative_donor.340"; gene_name "CUFF.1968"; flanks "79479490-,79479386^"; structure "1^,2^"; splice_chain "79479641^,79479490^";
chr17	juncbase	alternative_donor	79481573	79479386	.	-	.	gene_id "alternative_donor.341"; transcript_id "alternative_donor.341"; gene_name "CUFF.1968"; flanks "79481573-,79479386^"; structure "1^,2^"; splice_chain "79481573^,79479641^";
chr17	juncbase	alternative_donor	79490668	79479386	.	-	.	gene_id "alternative_donor.342"; transcript_id "alternative_donor.342"; gene_name "CUFF.1968"; flanks "79490668-,79479386^"; structure "1^,2^"; splice_chain "79490668^,79479641^";
chr17	juncbase	alternative_donor	79479760	79479386	.	-	.	gene_id "alternative_donor.343"; transcript_id "alternative_donor.343"; gene_name "CUFF.1968"; flanks "79479760-,79479386^"; structure "1^,2^"; splice_chain "79479760^,79479641^";
chr17	juncbase	alternative_donor	79479632	79479386	.	-	.	gene_id "alternative_donor.344"; transcript_id "alternative_donor.344"; gene_name "CUFF.1968"; flanks "79479632-,79479386^"; structure "1^,2^"; splice_chain "79479641^,79479632^";
chr17	juncbase	jcn_only_AA	1615693	1616997	.	-	.	gene_id "jcn_only_AA.462"; transcript_id "jcn_only_AA.462"; gene_name "CUFF.1878"; flanks "1615693-,1616997^"; structure "1-,2-"; splice_chain "1616219-,1615693-";
chr17	juncbase	jcn_only_AA	1616189	1616997	.	-	.	gene_id "jcn_only_AA.463"; transcript_id "jcn_only_AA.463"; gene_name "CUFF.1878"; flanks "1616189-,1616997^"; structure "1-,2-"; splice_chain "1616219-,1616189-";
chr17	juncbase	jcn_only_AA	1616349	1616997	.	-	.	gene_id "jcn_only_AA.464"; transcript_id "jcn_only_AA.464"; gene_name "CUFF.1878"; flanks "1616349-,1616997^"; structure "1-,2-"; splice_chain "1616349-,1616219-";
chr17	juncbase	jcn_only_AA	1616198	1616997	.	-	.	gene_id "jcn_only_AA.465"; transcript_id "jcn_only_AA.465"; gene_name "CUFF.1878"; flanks "1616198-,1616997^"; structure "1-,2-"; splice_chain "1616219-,1616198-";
chr17	juncbase	alternative_acceptor	1616349	1617150	.	-	.	gene_id "alternative_acceptor.343"; transcript_id "alternative_acceptor.343"; gene_name "CUFF.1878"; flanks "1616349-,1617150^"; structure "1-,2-"; splice_chain "1616349-,1616198-";
chr17	juncbase	alternative_acceptor	1616189	1617150	.	-	.	gene_id "alternative_acceptor.344"; transcript_id "alternative_acceptor.344"; gene_name "CUFF.1878"; flanks "1616189-,1617150^"; structure "1-,2-"; splice_chain "1616198-,1616189-";
chr17	juncbase	alternative_acceptor	1615693	1617150	.	-	.	gene_id "alternative_acceptor.345"; transcript_id "alternative_acceptor.345"; gene_name "CUFF.1878"; flanks "1615693-,1617150^"; structure "1-,2-"; splice_chain "1616198-,1615693-";
chr17	juncbase	alternative_acceptor	1615940	1617150	.	-	.	gene_id "alternative_acceptor.346"; transcript_id "alternative_acceptor.346"; gene_name "CUFF.1878"; flanks "1615940-,1617150^"; structure "1-,2-"; splice_chain "1616198-,1615940-";
chr17	juncbase	jcn_only_AA	79479141	79479258	.	-	.	gene_id "jcn_only_AA.466"; transcript_id "jcn_only_AA.466"; gene_name "CUFF.1968"; flanks "79479141-,79479258^"; structure "1-,2-"; splice_chain "79479168-,79479141-";
chr17	juncbase	intron_retention	15586175	15584267	.	-	.	gene_id "intron_retention.406"; transcript_id "intron_retention.406"; gene_name "CUFF.1898"; flanks "15586175-,15584267^"; structure "0,1^2-"; splice_chain ",15586175^15584267-";
chr17	juncbase	intron_retention	1617150	1616198	.	-	.	gene_id "intron_retention.407"; transcript_id "intron_retention.407"; gene_name ""; flanks "1617150-,1616198^"; structure "0,1^2-"; splice_chain ",1617150^1616198-";
chr17	juncbase	jcn_only_AA	80436794	80438283	.	+	.	gene_id "jcn_only_AA.467"; transcript_id "jcn_only_AA.467"; gene_name "CUFF.1977"; flanks "80436794-,80438283^"; structure "1-,2-"; splice_chain "80437814-,80438283-";
chr17	juncbase	jcn_only_AA	80436794	80438958	.	+	.	gene_id "jcn_only_AA.468"; transcript_id "jcn_only_AA.468"; gene_name "CUFF.1977"; flanks "80436794-,80438958^"; structure "1-,2-"; splice_chain "80437814-,80438958-";
chr17	juncbase	cassette	61850772	61843554	.	-	.	gene_id "cassette.259"; transcript_id "cassette.259"; gene_name "CUFF.1943"; flanks "61850772-,61843554^"; structure "0,1-2^"; splice_chain ",61850223-61850137^";
chr17	juncbase	jcn_only_AA	79893020	79893999	.	-	.	gene_id "jcn_only_AA.469"; transcript_id "jcn_only_AA.469"; gene_name "CUFF.1972"; flanks "79893020-,79893999^"; structure "1-,2-"; splice_chain "79893392-,79893020-";
chr17	juncbase	alternative_donor	56084305	56083888	.	-	.	gene_id "alternative_donor.345"; transcript_id "alternative_donor.345"; gene_name "CUFF.1936"; flanks "56084305-,56083888^"; structure "1^,2^"; splice_chain "56084305^,56084268^";
chr17	juncbase	cassette	76996182	76994045	.	-	.	gene_id "cassette.260"; transcript_id "cassette.260"; gene_name "CUFF.1960"; flanks "76996182-,76994045^"; structure "0,1-2^"; splice_chain ",76994368-76994230^";
chr17	juncbase	cassette	77005746	76994045	.	-	.	gene_id "cassette.261"; transcript_id "cassette.261"; gene_name "CUFF.1960"; flanks "77005746-,76994045^"; structure "0,1-2^"; splice_chain ",76994368-76994230^";
chr17	juncbase	jcn_only_AD	61904883	61907493	.	+	.	gene_id "jcn_only_AD.428"; transcript_id "jcn_only_AD.428"; gene_name "CUFF.1944"; flanks "61904883-,61907493^"; structure "1^,2^"; splice_chain "61904883^,61907309^";
chr17	juncbase	alternative_donor	61904883	61907493	.	+	.	gene_id "alternative_donor.346"; transcript_id "alternative_donor.346"; gene_name "CUFF.1944"; flanks "61904883-,61907493^"; structure "1^,2^"; splice_chain "61904883^,61907309^";
chr17	juncbase	intron_retention	56083162	56082961	.	-	.	gene_id "intron_retention.408"; transcript_id "intron_retention.408"; gene_name "CUFF.1936"; flanks "56083162-,56082961^"; structure "0,1^2-"; splice_chain ",56083162^56082961-";
chr17	juncbase	alternative_acceptor	61561902	61562597	.	+	.	gene_id "alternative_acceptor.347"; transcript_id "alternative_acceptor.347"; gene_name "CUFF.1942"; flanks "61561902-,61562597^"; structure "1-,2-"; splice_chain "61562331-,61562597-";
chr17	juncbase	alternative_donor	61568729	61571283	.	+	.	gene_id "alternative_donor.347"; transcript_id "alternative_donor.347"; gene_name "CUFF.1942"; flanks "61568729-,61571283^"; structure "1^,2^"; splice_chain "61568729^,61571020^";
chr17	juncbase	alternative_donor	61567389	61571283	.	+	.	gene_id "alternative_donor.348"; transcript_id "alternative_donor.348"; gene_name "CUFF.1942"; flanks "61567389-,61571283^"; structure "1^,2^"; splice_chain "61567389^,61571020^";
chr17	juncbase	alternative_acceptor	79220858	79225293	.	-	.	gene_id "alternative_acceptor.348"; transcript_id "alternative_acceptor.348"; gene_name "CUFF.1964"; flanks "79220858-,79225293^"; structure "1-,2-"; splice_chain "79220861-,79220858-";
chr17	juncbase	alternative_acceptor	79223893	79225293	.	-	.	gene_id "alternative_acceptor.349"; transcript_id "alternative_acceptor.349"; gene_name "CUFF.1964"; flanks "79223893-,79225293^"; structure "1-,2-"; splice_chain "79223893-,79220861-";
chr17	juncbase	alternative_donor	79481573	79479386	.	-	.	gene_id "alternative_donor.349"; transcript_id "alternative_donor.349"; gene_name "CUFF.1968"; flanks "79481573-,79479386^"; structure "1^,2^"; splice_chain "79481573^,79479490^";
chr17	juncbase	alternative_donor	79490668	79479386	.	-	.	gene_id "alternative_donor.350"; transcript_id "alternative_donor.350"; gene_name "CUFF.1968"; flanks "79490668-,79479386^"; structure "1^,2^"; splice_chain "79490668^,79479490^";
chr17	juncbase	alternative_donor	79479760	79479386	.	-	.	gene_id "alternative_donor.351"; transcript_id "alternative_donor.351"; gene_name "CUFF.1968"; flanks "79479760-,79479386^"; structure "1^,2^"; splice_chain "79479760^,79479490^";
chr17	juncbase	alternative_donor	79479641	79479386	.	-	.	gene_id "alternative_donor.352"; transcript_id "alternative_donor.352"; gene_name "CUFF.1968"; flanks "79479641-,79479386^"; structure "1^,2^"; splice_chain "79479641^,79479490^";
chr17	juncbase	alternative_donor	79479632	79479386	.	-	.	gene_id "alternative_donor.353"; transcript_id "alternative_donor.353"; gene_name "CUFF.1968"; flanks "79479632-,79479386^"; structure "1^,2^"; splice_chain "79479632^,79479490^";
chr17	juncbase	jcn_only_AA	1616198	1617150	.	-	.	gene_id "jcn_only_AA.470"; transcript_id "jcn_only_AA.470"; gene_name "CUFF.1878"; flanks "1616198-,1617150^"; structure "1-,2-"; splice_chain "1616349-,1616198-";
chr17	juncbase	jcn_only_AA	1616189	1617150	.	-	.	gene_id "jcn_only_AA.471"; transcript_id "jcn_only_AA.471"; gene_name "CUFF.1878"; flanks "1616189-,1617150^"; structure "1-,2-"; splice_chain "1616349-,1616189-";
chr17	juncbase	jcn_only_AA	1615693	1617150	.	-	.	gene_id "jcn_only_AA.472"; transcript_id "jcn_only_AA.472"; gene_name "CUFF.1878"; flanks "1615693-,1617150^"; structure "1-,2-"; splice_chain "1616349-,1615693-";
chr17	juncbase	jcn_only_AA	1615940	1617150	.	-	.	gene_id "jcn_only_AA.473"; transcript_id "jcn_only_AA.473"; gene_name "CUFF.1878"; flanks "1615940-,1617150^"; structure "1-,2-"; splice_chain "1616349-,1615940-";
chr17	juncbase	jcn_only_AA	15581035	15584179	.	-	.	gene_id "jcn_only_AA.474"; transcript_id "jcn_only_AA.474"; gene_name "CUFF.1898"; flanks "15581035-,15584179^"; structure "1-,2-"; splice_chain "15581035-,15580996-";
chr17	juncbase	jcn_only_AA	15580594	15584179	.	-	.	gene_id "jcn_only_AA.475"; transcript_id "jcn_only_AA.475"; gene_name "CUFF.1898"; flanks "15580594-,15584179^"; structure "1-,2-"; splice_chain "15580996-,15580594-";
chr17	juncbase	jcn_only_AA	15562190	15584179	.	-	.	gene_id "jcn_only_AA.476"; transcript_id "jcn_only_AA.476"; gene_name "CUFF.1898"; flanks "15562190-,15584179^"; structure "1-,2-"; splice_chain "15580996-,15562190-";
chr17	juncbase	jcn_only_AA	15557745	15584179	.	-	.	gene_id "jcn_only_AA.477"; transcript_id "jcn_only_AA.477"; gene_name "CUFF.1898"; flanks "15557745-,15584179^"; structure "1-,2-"; splice_chain "15580996-,15557745-";
chr17	juncbase	jcn_only_AA	15546130	15584179	.	-	.	gene_id "jcn_only_AA.478"; transcript_id "jcn_only_AA.478"; gene_name "CUFF.1898"; flanks "15546130-,15584179^"; structure "1-,2-"; splice_chain "15580996-,15546130-";
chr17	juncbase	alternative_acceptor	80416384	80417868	.	+	.	gene_id "alternative_acceptor.350"; transcript_id "alternative_acceptor.350"; gene_name "CUFF.1881,CUFF.1977"; flanks "80416384-,80417868^"; structure "1-,2-"; splice_chain "80417151-,80417868-";
chr17	juncbase	intron_retention	61904874	61905479	.	+	.	gene_id "intron_retention.409"; transcript_id "intron_retention.409"; gene_name "CUFF.1944"; flanks "61904874-,61905479^"; structure "0,1^2-"; splice_chain ",61904874^61905479-";
chr17	juncbase	intron_retention	61905283	61905479	.	+	.	gene_id "intron_retention.410"; transcript_id "intron_retention.410"; gene_name ""; flanks "61905283-,61905479^"; structure "0,1^2-"; splice_chain ",61905283^61905479-";
chr17	juncbase	jcn_only_AD	79479490	79479386	.	-	.	gene_id "jcn_only_AD.429"; transcript_id "jcn_only_AD.429"; gene_name ""; flanks "79479490-,79479386^"; structure "1^,2^"; splice_chain "79479760^,79479490^";
chr17	juncbase	jcn_only_AD	79481573	79479386	.	-	.	gene_id "jcn_only_AD.430"; transcript_id "jcn_only_AD.430"; gene_name ""; flanks "79481573-,79479386^"; structure "1^,2^"; splice_chain "79481573^,79479760^";
chr17	juncbase	jcn_only_AD	79490668	79479386	.	-	.	gene_id "jcn_only_AD.431"; transcript_id "jcn_only_AD.431"; gene_name ""; flanks "79490668-,79479386^"; structure "1^,2^"; splice_chain "79490668^,79479760^";
chr17	juncbase	jcn_only_AD	79479641	79479386	.	-	.	gene_id "jcn_only_AD.432"; transcript_id "jcn_only_AD.432"; gene_name ""; flanks "79479641-,79479386^"; structure "1^,2^"; splice_chain "79479760^,79479641^";
chr17	juncbase	jcn_only_AD	79479632	79479386	.	-	.	gene_id "jcn_only_AD.433"; transcript_id "jcn_only_AD.433"; gene_name ""; flanks "79479632-,79479386^"; structure "1^,2^"; splice_chain "79479760^,79479632^";
chr17	juncbase	cassette	42114780	42113668	.	-	.	gene_id "cassette.262"; transcript_id "cassette.262"; gene_name "CUFF.1927"; flanks "42114780-,42113668^"; structure "0,1-2^"; splice_chain ",42114470-42114230^";
chr17	juncbase	jcn_only_AD	79995490	79994889	.	-	.	gene_id "jcn_only_AD.434"; transcript_id "jcn_only_AD.434"; gene_name "CUFF.1975"; flanks "79995490-,79994889^"; structure "1^,2^"; splice_chain "79995490^,79995326^";
chr17	juncbase	jcn_only_AD	79995507	79994889	.	-	.	gene_id "jcn_only_AD.435"; transcript_id "jcn_only_AD.435"; gene_name "CUFF.1975"; flanks "79995507-,79994889^"; structure "1^,2^"; splice_chain "79995507^,79995326^";
chr17	juncbase	alternative_donor	79994067	79993939	.	-	.	gene_id "alternative_donor.354"; transcript_id "alternative_donor.354"; gene_name "CUFF.1975"; flanks "79994067-,79993939^"; structure "1^,2^"; splice_chain "79994067^,79994058^";
chr17	juncbase	alternative_donor	79994023	79993939	.	-	.	gene_id "alternative_donor.355"; transcript_id "alternative_donor.355"; gene_name "CUFF.1975"; flanks "79994023-,79993939^"; structure "1^,2^"; splice_chain "79994058^,79994023^";
chr16	juncbase	jcn_only_AA	19580913	19584446	.	+	.	gene_id "jcn_only_AA.479"; transcript_id "jcn_only_AA.479"; gene_name "CUFF.1815"; flanks "19580913-,19584446^"; structure "1-,2-"; splice_chain "19584441-,19584446-";
chr16	juncbase	cassette	3194325	3194744	.	+	.	gene_id "cassette.263"; transcript_id "cassette.263"; gene_name "CUFF.1784"; flanks "3194325-,3194744^"; structure "0,1-2^"; splice_chain ",3194454-3194648^";
chr16	juncbase	alternative_donor	23505624	23504779	.	-	.	gene_id "alternative_donor.356"; transcript_id "alternative_donor.356"; gene_name "CUFF.1829"; flanks "23505624-,23504779^"; structure "1^,2^"; splice_chain "23505624^,23505620^";
chr16	juncbase	alternative_donor	4411986	4411470	.	-	.	gene_id "alternative_donor.357"; transcript_id "alternative_donor.357"; gene_name "CUFF.1800"; flanks "4411986-,4411470^"; structure "1^,2^"; splice_chain "4411986^,4411750^";
chr16	juncbase	intron_retention	21712348	21716490	.	+	.	gene_id "intron_retention.411"; transcript_id "intron_retention.411"; gene_name "CUFF.1819"; flanks "21712348-,21716490^"; structure "0,1^2-"; splice_chain ",21712348^21716490-";
chr16	juncbase	alternative_acceptor	70399034	70399988	.	+	.	gene_id "alternative_acceptor.351"; transcript_id "alternative_acceptor.351"; gene_name "CUFF.1855,CUFF.1861"; flanks "70399034-,70399988^"; structure "1-,2-"; splice_chain "70399836-,70399988-";
chr16	juncbase	alternative_acceptor	603041	604554	.	+	.	gene_id "alternative_acceptor.352"; transcript_id "alternative_acceptor.352"; gene_name "CUFF.1768,CUFF.1783"; flanks "603041-,604554^"; structure "1-,2-"; splice_chain "603339-,604554-";
chr16	juncbase	jcn_only_AD	21716613	21721209	.	+	.	gene_id "jcn_only_AD.436"; transcript_id "jcn_only_AD.436"; gene_name "CUFF.1819"; flanks "21716613-,21721209^"; structure "1^,2^"; splice_chain "21716613^,21716765^";
chr16	juncbase	jcn_only_AD	3115495	3115782	.	+	.	gene_id "jcn_only_AD.437"; transcript_id "jcn_only_AD.437"; gene_name ""; flanks "3115495-,3115782^"; structure "1^,2^"; splice_chain "3115495^,3115688^";
chr16	juncbase	jcn_only_AD	3115711	3115782	.	+	.	gene_id "jcn_only_AD.438"; transcript_id "jcn_only_AD.438"; gene_name ""; flanks "3115711-,3115782^"; structure "1^,2^"; splice_chain "3115688^,3115711^";
chr16	juncbase	alternative_acceptor	19710970	19716438	.	+	.	gene_id "alternative_acceptor.353"; transcript_id "alternative_acceptor.353"; gene_name "CUFF.1866"; flanks "19710970-,19716438^"; structure "1-,2-"; splice_chain "19711700-,19716438-";
chr16	juncbase	intron_retention	30004961	30004878	.	-	.	gene_id "intron_retention.412"; transcript_id "intron_retention.412"; gene_name "CUFF.1836"; flanks "30004961-,30004878^"; structure "0,1^2-"; splice_chain ",30004961^30004878-";
chr16	juncbase	intron_retention	4411750	4411470	.	-	.	gene_id "intron_retention.413"; transcript_id "intron_retention.413"; gene_name "CUFF.1800"; flanks "4411750-,4411470^"; structure "0,1^2-"; splice_chain ",4411750^4411470-";
chr16	juncbase	intron_retention	3115711	3115782	.	+	.	gene_id "intron_retention.414"; transcript_id "intron_retention.414"; gene_name ""; flanks "3115711-,3115782^"; structure "0,1^2-"; splice_chain ",3115711^3115782-";
chr16	juncbase	cassette	3118011	3118991	.	+	.	gene_id "cassette.264"; transcript_id "cassette.264"; gene_name "CUFF.1783"; flanks "3118011-,3118991^"; structure "0,1-2^"; splice_chain ",3118181-3118240^";
chr16	juncbase	alternative_donor	4466460	4463405	.	-	.	gene_id "alternative_donor.358"; transcript_id "alternative_donor.358"; gene_name "CUFF.1800"; flanks "4466460-,4463405^"; structure "1^,2^"; splice_chain "4466460^,4465716^";
chr16	juncbase	alternative_donor	4464308	4463405	.	-	.	gene_id "alternative_donor.359"; transcript_id "alternative_donor.359"; gene_name "CUFF.1800"; flanks "4464308-,4463405^"; structure "1^,2^"; splice_chain "4465716^,4464308^";
chr16	juncbase	alternative_donor	4465767	4463405	.	-	.	gene_id "alternative_donor.360"; transcript_id "alternative_donor.360"; gene_name "CUFF.1800"; flanks "4465767-,4463405^"; structure "1^,2^"; splice_chain "4465767^,4465716^";
chr16	juncbase	alternative_donor	4466786	4463405	.	-	.	gene_id "alternative_donor.361"; transcript_id "alternative_donor.361"; gene_name "CUFF.1800"; flanks "4466786-,4463405^"; structure "1^,2^"; splice_chain "4466786^,4465716^";
chr16	juncbase	jcn_only_AD	70380951	70384460	.	+	.	gene_id "jcn_only_AD.439"; transcript_id "jcn_only_AD.439"; gene_name "CUFF.1861"; flanks "70380951-,70384460^"; structure "1^,2^"; splice_chain "70380951^,70381893^";
chr16	juncbase	jcn_only_AA	105549	105794	.	+	.	gene_id "jcn_only_AA.480"; transcript_id "jcn_only_AA.480"; gene_name ""; flanks "105549-,105794^"; structure "1-,2-"; splice_chain "105777-,105794-";
chr16	juncbase	alternative_acceptor	4445340	4455492	.	-	.	gene_id "alternative_acceptor.354"; transcript_id "alternative_acceptor.354"; gene_name "CUFF.1800"; flanks "4445340-,4455492^"; structure "1-,2-"; splice_chain "4447451-,4445340-";
chr16	juncbase	alternative_donor	3115688	3115785	.	+	.	gene_id "alternative_donor.362"; transcript_id "alternative_donor.362"; gene_name "CUFF.1783"; flanks "3115688-,3115785^"; structure "1^,2^"; splice_chain "3115688^,3115711^";
chr16	juncbase	alternative_donor	3115495	3115785	.	+	.	gene_id "alternative_donor.363"; transcript_id "alternative_donor.363"; gene_name "CUFF.1783"; flanks "3115495-,3115785^"; structure "1^,2^"; splice_chain "3115495^,3115711^";
chr16	juncbase	alternative_donor	3115656	3115785	.	+	.	gene_id "alternative_donor.364"; transcript_id "alternative_donor.364"; gene_name "CUFF.1783"; flanks "3115656-,3115785^"; structure "1^,2^"; splice_chain "3115656^,3115711^";
chr16	juncbase	alternative_donor	63651597	63565208	.	-	.	gene_id "alternative_donor.365"; transcript_id "alternative_donor.365"; gene_name "CUFF.1852"; flanks "63651597-,63565208^"; structure "1^,2^"; splice_chain "63651597^,63566721^";
chr16	juncbase	jcn_only_AD	4466460	4463405	.	-	.	gene_id "jcn_only_AD.440"; transcript_id "jcn_only_AD.440"; gene_name "CUFF.1800"; flanks "4466460-,4463405^"; structure "1^,2^"; splice_chain "4466460^,4465716^";
chr16	juncbase	jcn_only_AD	4464308	4463405	.	-	.	gene_id "jcn_only_AD.441"; transcript_id "jcn_only_AD.441"; gene_name "CUFF.1800"; flanks "4464308-,4463405^"; structure "1^,2^"; splice_chain "4465716^,4464308^";
chr16	juncbase	jcn_only_AD	4465767	4463405	.	-	.	gene_id "jcn_only_AD.442"; transcript_id "jcn_only_AD.442"; gene_name "CUFF.1800"; flanks "4465767-,4463405^"; structure "1^,2^"; splice_chain "4465767^,4465716^";
chr16	juncbase	jcn_only_AD	4466786	4463405	.	-	.	gene_id "jcn_only_AD.443"; transcript_id "jcn_only_AD.443"; gene_name "CUFF.1800"; flanks "4466786-,4463405^"; structure "1^,2^"; splice_chain "4466786^,4465716^";
chr16	juncbase	alternative_acceptor	586142	596817	.	+	.	gene_id "alternative_acceptor.355"; transcript_id "alternative_acceptor.355"; gene_name "CUFF.1768"; flanks "586142-,596817^"; structure "1-,2-"; splice_chain "587134-,596817-";
chr16	juncbase	intron_retention	89804313	89804384	.	+	.	gene_id "intron_retention.415"; transcript_id "intron_retention.415"; gene_name "CUFF.1874"; flanks "89804313-,89804384^"; structure "0,1^2-"; splice_chain ",89804313^89804384-";
chr16	juncbase	intron_retention	89799820	89799890	.	+	.	gene_id "intron_retention.416"; transcript_id "intron_retention.416"; gene_name "CUFF.1874"; flanks "89799820-,89799890^"; structure "0,1^2-"; splice_chain ",89799820^89799890-";
chr16	juncbase	intron_retention	23478310	23478151	.	-	.	gene_id "intron_retention.417"; transcript_id "intron_retention.417"; gene_name "CUFF.1829"; flanks "23478310-,23478151^"; structure "0,1^2-"; splice_chain ",23478310^23478151-";
chr16	juncbase	intron_retention	70253815	70253698	.	-	.	gene_id "intron_retention.418"; transcript_id "intron_retention.418"; gene_name "CUFF.1860"; flanks "70253815-,70253698^"; structure "0,1^2-"; splice_chain ",70253815^70253698-";
chr16	juncbase	alternative_acceptor	87807147	87811474	.	-	.	gene_id "alternative_acceptor.356"; transcript_id "alternative_acceptor.356"; gene_name "CUFF.1873"; flanks "87807147-,87811474^"; structure "1-,2-"; splice_chain "87807195-,87807147-";
chr16	juncbase	jcn_only_AA	21976826	22352971	.	+	.	gene_id "jcn_only_AA.481"; transcript_id "jcn_only_AA.481"; gene_name ""; flanks "21976826-,22352971^"; structure "1-,2-"; splice_chain "21979949-,22352971-";
chr16	juncbase	jcn_only_AD	105542	105794	.	+	.	gene_id "jcn_only_AD.444"; transcript_id "jcn_only_AD.444"; gene_name ""; flanks "105542-,105794^"; structure "1^,2^"; splice_chain "105542^,105549^";
chr16	juncbase	cassette	4466460	4458252	.	-	.	gene_id "cassette.265"; transcript_id "cassette.265"; gene_name "CUFF.1800"; flanks "4466460-,4458252^"; structure "0,1-2^"; splice_chain ",4462431-4462357^";
chr16	juncbase	intron_retention	21716358	21716490	.	+	.	gene_id "intron_retention.419"; transcript_id "intron_retention.419"; gene_name ""; flanks "21716358-,21716490^"; structure "0,1^2-"; splice_chain ",21716358^21716490-";
chr16	juncbase	jcn_only_AA	70267573	70268077	.	-	.	gene_id "jcn_only_AA.482"; transcript_id "jcn_only_AA.482"; gene_name "CUFF.1860"; flanks "70267573-,70268077^"; structure "1-,2-"; splice_chain "70267605-,70267573-";
chr16	juncbase	intron_retention	3115495	3115643	.	+	.	gene_id "intron_retention.420"; transcript_id "intron_retention.420"; gene_name ""; flanks "3115495-,3115643^"; structure "0,1^2-"; splice_chain ",3115495^3115643-";
chr16	juncbase	alternative_acceptor	21737979	21739562	.	+	.	gene_id "alternative_acceptor.357"; transcript_id "alternative_acceptor.357"; gene_name "CUFF.1819"; flanks "21737979-,21739562^"; structure "1-,2-"; splice_chain "21738433-,21739562-";
chr16	juncbase	intron_retention	70400165	70400527	.	+	.	gene_id "intron_retention.421"; transcript_id "intron_retention.421"; gene_name "CUFF.1861"; flanks "70400165-,70400527^"; structure "0,1^2-"; splice_chain ",70400165^70400527-";
chr16	juncbase	intron_retention	30006862	30006164	.	-	.	gene_id "intron_retention.422"; transcript_id "intron_retention.422"; gene_name ""; flanks "30006862-,30006164^"; structure "0,1^2-"; splice_chain ",30006862^30006164-";
chr16	juncbase	jcn_only_AA	19576272	19580746	.	+	.	gene_id "jcn_only_AA.483"; transcript_id "jcn_only_AA.483"; gene_name "CUFF.1815"; flanks "19576272-,19580746^"; structure "1-,2-"; splice_chain "19580566-,19580746-";
chr16	juncbase	alternative_donor	2201610	2201696	.	+	.	gene_id "alternative_donor.366"; transcript_id "alternative_donor.366"; gene_name "CUFF.1777"; flanks "2201610-,2201696^"; structure "1^,2^"; splice_chain "2201610^,2201611^";
chr16	juncbase	alternative_acceptor	57509869	57513354	.	-	.	gene_id "alternative_acceptor.358"; transcript_id "alternative_acceptor.358"; gene_name "CUFF.1849"; flanks "57509869-,57513354^"; structure "1-,2-"; splice_chain "57512574-,57509869-";
chr16	juncbase	intron_retention	57521043	57513600	.	-	.	gene_id "intron_retention.423"; transcript_id "intron_retention.423"; gene_name ""; flanks "57521043-,57513600^"; structure "0,1^2-"; splice_chain ",57521043^57513600-";
chr16	juncbase	alternative_donor	4466460	4463405	.	-	.	gene_id "alternative_donor.367"; transcript_id "alternative_donor.367"; gene_name "CUFF.1800"; flanks "4466460-,4463405^"; structure "1^,2^"; splice_chain "4466786^,4466460^";
chr16	juncbase	alternative_donor	4465716	4463405	.	-	.	gene_id "alternative_donor.368"; transcript_id "alternative_donor.368"; gene_name "CUFF.1800"; flanks "4465716-,4463405^"; structure "1^,2^"; splice_chain "4466786^,4465716^";
chr16	juncbase	alternative_donor	4464308	4463405	.	-	.	gene_id "alternative_donor.369"; transcript_id "alternative_donor.369"; gene_name "CUFF.1800"; flanks "4464308-,4463405^"; structure "1^,2^"; splice_chain "4466786^,4464308^";
chr16	juncbase	alternative_donor	4465767	4463405	.	-	.	gene_id "alternative_donor.370"; transcript_id "alternative_donor.370"; gene_name "CUFF.1800"; flanks "4465767-,4463405^"; structure "1^,2^"; splice_chain "4466786^,4465767^";
chr16	juncbase	intron_retention	30006664	30006538	.	-	.	gene_id "intron_retention.424"; transcript_id "intron_retention.424"; gene_name "CUFF.1836"; flanks "30006664-,30006538^"; structure "0,1^2-"; splice_chain ",30006664^30006538-";
chr16	juncbase	jcn_only_AD	67222923	67221041	.	-	.	gene_id "jcn_only_AD.445"; transcript_id "jcn_only_AD.445"; gene_name "CUFF.1873"; flanks "67222923-,67221041^"; structure "1^,2^"; splice_chain "67222923^,67221128^";
chr16	juncbase	intron_retention	70389438	70390015	.	+	.	gene_id "intron_retention.425"; transcript_id "intron_retention.425"; gene_name ""; flanks "70389438-,70390015^"; structure "0,1^2-"; splice_chain ",70389438^70390015-";
chr16	juncbase	alternative_acceptor	70267573	70268077	.	-	.	gene_id "alternative_acceptor.359"; transcript_id "alternative_acceptor.359"; gene_name "CUFF.1860"; flanks "70267573-,70268077^"; structure "1-,2-"; splice_chain "70267605-,70267573-";
chr16	juncbase	alternative_donor	3115688	3115782	.	+	.	gene_id "alternative_donor.371"; transcript_id "alternative_donor.371"; gene_name ""; flanks "3115688-,3115782^"; structure "1^,2^"; splice_chain "3115495^,3115688^";
chr16	juncbase	alternative_donor	3115711	3115782	.	+	.	gene_id "alternative_donor.372"; transcript_id "alternative_donor.372"; gene_name ""; flanks "3115711-,3115782^"; structure "1^,2^"; splice_chain "3115495^,3115711^";
chr16	juncbase	intron_retention	57513773	57513600	.	-	.	gene_id "intron_retention.426"; transcript_id "intron_retention.426"; gene_name ""; flanks "57513773-,57513600^"; structure "0,1^2-"; splice_chain ",57513773^57513600-";
chr16	juncbase	intron_retention	23507015	23505699	.	-	.	gene_id "intron_retention.427"; transcript_id "intron_retention.427"; gene_name ""; flanks "23507015-,23505699^"; structure "0,1^2-"; splice_chain ",23507015^23505699-";
chr16	juncbase	cassette	19592975	19612986	.	+	.	gene_id "cassette.266"; transcript_id "cassette.266"; gene_name "CUFF.1815"; flanks "19592975-,19612986^"; structure "0,1-2^"; splice_chain ",19603112-19603196^";
chr16	juncbase	intron_retention	70399034	70399836	.	+	.	gene_id "intron_retention.428"; transcript_id "intron_retention.428"; gene_name "CUFF.1861"; flanks "70399034-,70399836^"; structure "0,1^2-"; splice_chain ",70399034^70399836-";
chr16	juncbase	alternative_donor	583998	596817	.	+	.	gene_id "alternative_donor.373"; transcript_id "alternative_donor.373"; gene_name "CUFF.1768"; flanks "583998-,596817^"; structure "1^,2^"; splice_chain "583998^,586142^";
chr16	juncbase	alternative_donor	21737979	21739562	.	+	.	gene_id "alternative_donor.374"; transcript_id "alternative_donor.374"; gene_name "CUFF.1819"; flanks "21737979-,21739562^"; structure "1^,2^"; splice_chain "21737979^,21738480^";
chr16	juncbase	alternative_acceptor	89789591	89789687	.	+	.	gene_id "alternative_acceptor.360"; transcript_id "alternative_acceptor.360"; gene_name "CUFF.1767,CUFF.1874"; flanks "89789591-,89789687^"; structure "1-,2-"; splice_chain "89789668-,89789687-";
chr16	juncbase	cassette	105882	106539	.	+	.	gene_id "cassette.267"; transcript_id "cassette.267"; gene_name "CUFF.1767"; flanks "105882-,106539^"; structure "0,1-2^"; splice_chain ",106321-106420^";
chr16	juncbase	alternative_acceptor	56226528	56309843	.	+	.	gene_id "alternative_acceptor.361"; transcript_id "alternative_acceptor.361"; gene_name "CUFF.1841"; flanks "56226528-,56309843^"; structure "1-,2-"; splice_chain "56268925-,56309843-";
chr16	juncbase	alternative_acceptor	56226528	56247184	.	+	.	gene_id "alternative_acceptor.362"; transcript_id "alternative_acceptor.362"; gene_name "CUFF.1841"; flanks "56226528-,56247184^"; structure "1-,2-"; splice_chain "56247184-,56268925-";
chr16	juncbase	intron_retention	30006862	30006784	.	-	.	gene_id "intron_retention.429"; transcript_id "intron_retention.429"; gene_name "CUFF.1836"; flanks "30006862-,30006784^"; structure "0,1^2-"; splice_chain ",30006862^30006784-";
chr16	juncbase	alternative_donor	89793733	89795643	.	+	.	gene_id "alternative_donor.375"; transcript_id "alternative_donor.375"; gene_name "CUFF.1874"; flanks "89793733-,89795643^"; structure "1^,2^"; splice_chain "89793733^,89793765^";
chr16	juncbase	alternative_donor	3115495	3115782	.	+	.	gene_id "alternative_donor.376"; transcript_id "alternative_donor.376"; gene_name ""; flanks "3115495-,3115782^"; structure "1^,2^"; splice_chain "3115495^,3115711^";
chr16	juncbase	alternative_donor	3115688	3115782	.	+	.	gene_id "alternative_donor.377"; transcript_id "alternative_donor.377"; gene_name ""; flanks "3115688-,3115782^"; structure "1^,2^"; splice_chain "3115688^,3115711^";
chr16	juncbase	jcn_only_AD	583998	596817	.	+	.	gene_id "jcn_only_AD.446"; transcript_id "jcn_only_AD.446"; gene_name "CUFF.1768"; flanks "583998-,596817^"; structure "1^,2^"; splice_chain "583998^,586142^";
chr16	juncbase	cassette	75589702	75576581	.	-	.	gene_id "cassette.268"; transcript_id "cassette.268"; gene_name "CUFF.1863"; flanks "75589702-,75576581^"; structure "0,1-2^"; splice_chain ",75579852-75579724^";
chr16	juncbase	alternative_donor	4466460	4463405	.	-	.	gene_id "alternative_donor.378"; transcript_id "alternative_donor.378"; gene_name "CUFF.1800"; flanks "4466460-,4463405^"; structure "1^,2^"; splice_chain "4466460^,4464308^";
chr16	juncbase	alternative_donor	4465716	4463405	.	-	.	gene_id "alternative_donor.379"; transcript_id "alternative_donor.379"; gene_name "CUFF.1800"; flanks "4465716-,4463405^"; structure "1^,2^"; splice_chain "4465716^,4464308^";
chr16	juncbase	alternative_donor	4465767	4463405	.	-	.	gene_id "alternative_donor.380"; transcript_id "alternative_donor.380"; gene_name "CUFF.1800"; flanks "4465767-,4463405^"; structure "1^,2^"; splice_chain "4465767^,4464308^";
chr16	juncbase	alternative_donor	4466786	4463405	.	-	.	gene_id "alternative_donor.381"; transcript_id "alternative_donor.381"; gene_name "CUFF.1800"; flanks "4466786-,4463405^"; structure "1^,2^"; splice_chain "4466786^,4464308^";
chr16	juncbase	intron_retention	4411986	4411804	.	-	.	gene_id "intron_retention.430"; transcript_id "intron_retention.430"; gene_name ""; flanks "4411986-,4411804^"; structure "0,1^2-"; splice_chain ",4411986^4411804-";
chr16	juncbase	intron_retention	4465767	4463405	.	-	.	gene_id "intron_retention.431"; transcript_id "intron_retention.431"; gene_name ""; flanks "4465767-,4463405^"; structure "0,1^2-"; splice_chain ",4465767^4463405-";
chr16	juncbase	intron_retention	1372489	1370459	.	-	.	gene_id "intron_retention.432"; transcript_id "intron_retention.432"; gene_name "CUFF.1773"; flanks "1372489-,1370459^"; structure "0,1^2-"; splice_chain ",1372489^1370459-";
chr16	juncbase	jcn_only_AD	67233485	67233587	.	+	.	gene_id "jcn_only_AD.447"; transcript_id "jcn_only_AD.447"; gene_name "CUFF.1855"; flanks "67233485-,67233587^"; structure "1^,2^"; splice_chain "67233485^,67233496^";
chr16	juncbase	intron_retention	75589969	75589871	.	-	.	gene_id "intron_retention.433"; transcript_id "intron_retention.433"; gene_name "CUFF.1863"; flanks "75589969-,75589871^"; structure "0,1^2-"; splice_chain ",75589969^75589871-";
chr16	juncbase	jcn_only_AA	56226528	56309843	.	+	.	gene_id "jcn_only_AA.484"; transcript_id "jcn_only_AA.484"; gene_name "CUFF.1841"; flanks "56226528-,56309843^"; structure "1-,2-"; splice_chain "56268925-,56309843-";
chr16	juncbase	jcn_only_AA	56226528	56247184	.	+	.	gene_id "jcn_only_AA.485"; transcript_id "jcn_only_AA.485"; gene_name "CUFF.1841"; flanks "56226528-,56247184^"; structure "1-,2-"; splice_chain "56247184-,56268925-";
chr16	juncbase	intron_retention	21976826	21979949	.	+	.	gene_id "intron_retention.434"; transcript_id "intron_retention.434"; gene_name ""; flanks "21976826-,21979949^"; structure "0,1^2-"; splice_chain ",21976826^21979949-";
chr16	juncbase	jcn_only_AD	4466460	4463405	.	-	.	gene_id "jcn_only_AD.448"; transcript_id "jcn_only_AD.448"; gene_name "CUFF.1800"; flanks "4466460-,4463405^"; structure "1^,2^"; splice_chain "4466460^,4464308^";
chr16	juncbase	jcn_only_AD	4465716	4463405	.	-	.	gene_id "jcn_only_AD.449"; transcript_id "jcn_only_AD.449"; gene_name "CUFF.1800"; flanks "4465716-,4463405^"; structure "1^,2^"; splice_chain "4465716^,4464308^";
chr16	juncbase	jcn_only_AD	4465767	4463405	.	-	.	gene_id "jcn_only_AD.450"; transcript_id "jcn_only_AD.450"; gene_name "CUFF.1800"; flanks "4465767-,4463405^"; structure "1^,2^"; splice_chain "4465767^,4464308^";
chr16	juncbase	jcn_only_AD	4466786	4463405	.	-	.	gene_id "jcn_only_AD.451"; transcript_id "jcn_only_AD.451"; gene_name "CUFF.1800"; flanks "4466786-,4463405^"; structure "1^,2^"; splice_chain "4466786^,4464308^";
chr16	juncbase	intron_retention	31368422	31368574	.	+	.	gene_id "intron_retention.435"; transcript_id "intron_retention.435"; gene_name "CUFF.1838"; flanks "31368422-,31368574^"; structure "0,1^2-"; splice_chain ",31368422^31368574-";
chr16	juncbase	intron_retention	23505620	23504779	.	-	.	gene_id "intron_retention.436"; transcript_id "intron_retention.436"; gene_name "CUFF.1829"; flanks "23505620-,23504779^"; structure "0,1^2-"; splice_chain ",23505620^23504779-";
chr16	juncbase	intron_retention	89789242	89789545	.	+	.	gene_id "intron_retention.437"; transcript_id "intron_retention.437"; gene_name "CUFF.1874"; flanks "89789242-,89789545^"; structure "0,1^2-"; splice_chain ",89789242^89789545-";
chr16	juncbase	alternative_acceptor	21976826	22352971	.	+	.	gene_id "alternative_acceptor.363"; transcript_id "alternative_acceptor.363"; gene_name ""; flanks "21976826-,22352971^"; structure "1-,2-"; splice_chain "21979949-,22352971-";
chr16	juncbase	jcn_only_AA	67221041	67222923	.	-	.	gene_id "jcn_only_AA.486"; transcript_id "jcn_only_AA.486"; gene_name "CUFF.1856"; flanks "67221041-,67222923^"; structure "1-,2-"; splice_chain "67222843-,67221041-";
chr16	juncbase	intron_retention	105882	106321	.	+	.	gene_id "intron_retention.438"; transcript_id "intron_retention.438"; gene_name "CUFF.1767"; flanks "105882-,106321^"; structure "0,1^2-"; splice_chain ",105882^106321-";
chr16	juncbase	jcn_only_AA	603041	604554	.	+	.	gene_id "jcn_only_AA.487"; transcript_id "jcn_only_AA.487"; gene_name "CUFF.1768,CUFF.1783"; flanks "603041-,604554^"; structure "1-,2-"; splice_chain "603339-,604554-";
chr16	juncbase	jcn_only_AD	70267327	70266707	.	-	.	gene_id "jcn_only_AD.452"; transcript_id "jcn_only_AD.452"; gene_name "CUFF.1860"; flanks "70267327-,70266707^"; structure "1^,2^"; splice_chain "70267327^,70267316^";
chr16	juncbase	alternative_acceptor	67234871	67235312	.	+	.	gene_id "alternative_acceptor.364"; transcript_id "alternative_acceptor.364"; gene_name "CUFF.1855"; flanks "67234871-,67235312^"; structure "1-,2-"; splice_chain "67235288-,67235312-";
chr16	juncbase	cassette	15177370	15170507	.	-	.	gene_id "cassette.269"; transcript_id "cassette.269"; gene_name "CUFF.1813"; flanks "15177370-,15170507^"; structure "0,1-2^"; splice_chain ",15173953-15173855^";
chr16	juncbase	jcn_only_AA	57513597	57513757	.	-	.	gene_id "jcn_only_AA.488"; transcript_id "jcn_only_AA.488"; gene_name ""; flanks "57513597-,57513757^"; structure "1-,2-"; splice_chain "57513600-,57513597-";
chr16	juncbase	intron_retention	3117614	3118181	.	+	.	gene_id "intron_retention.439"; transcript_id "intron_retention.439"; gene_name ""; flanks "3117614-,3118181^"; structure "0,1^2-"; splice_chain ",3117614^3118181-";
chr16	juncbase	alternative_donor	23507010	23505699	.	-	.	gene_id "alternative_donor.382"; transcript_id "alternative_donor.382"; gene_name "CUFF.1829"; flanks "23507010-,23505699^"; structure "1^,2^"; splice_chain "23507015^,23507010^";
chr16	juncbase	alternative_donor	23507035	23505699	.	-	.	gene_id "alternative_donor.383"; transcript_id "alternative_donor.383"; gene_name "CUFF.1829"; flanks "23507035-,23505699^"; structure "1^,2^"; splice_chain "23507035^,23507015^";
chr16	juncbase	cassette	31383105	31383918	.	+	.	gene_id "cassette.270"; transcript_id "cassette.270"; gene_name "CUFF.1838"; flanks "31383105-,31383918^"; structure "0,1-2^"; splice_chain ",31383699-31383830^";
chr16	juncbase	jcn_only_AD	6093176	6400446	.	+	.	gene_id "jcn_only_AD.453"; transcript_id "jcn_only_AD.453"; gene_name ""; flanks "6093176-,6400446^"; structure "1^,2^"; splice_chain "6028173^,6093176^";
chr16	juncbase	jcn_only_AD	6028178	6400446	.	+	.	gene_id "jcn_only_AD.454"; transcript_id "jcn_only_AD.454"; gene_name ""; flanks "6028178-,6400446^"; structure "1^,2^"; splice_chain "6028173^,6028178^";
chr16	juncbase	jcn_only_AD	6328434	6400446	.	+	.	gene_id "jcn_only_AD.455"; transcript_id "jcn_only_AD.455"; gene_name ""; flanks "6328434-,6400446^"; structure "1^,2^"; splice_chain "6028173^,6328434^";
chr16	juncbase	jcn_only_AD	6093173	6400446	.	+	.	gene_id "jcn_only_AD.456"; transcript_id "jcn_only_AD.456"; gene_name ""; flanks "6093173-,6400446^"; structure "1^,2^"; splice_chain "6028173^,6093173^";
chr16	juncbase	cassette	15185172	15180115	.	-	.	gene_id "cassette.271"; transcript_id "cassette.271"; gene_name "CUFF.1813"; flanks "15185172-,15180115^"; structure "0,1-2^"; splice_chain ",15180311-15180222^";
chr16	juncbase	intron_retention	2202886	2202990	.	+	.	gene_id "intron_retention.440"; transcript_id "intron_retention.440"; gene_name "CUFF.1777"; flanks "2202886-,2202990^"; structure "0,1^2-"; splice_chain ",2202886^2202990-";
chr16	juncbase	alternative_donor	21716613	21721209	.	+	.	gene_id "alternative_donor.384"; transcript_id "alternative_donor.384"; gene_name "CUFF.1819"; flanks "21716613-,21721209^"; structure "1^,2^"; splice_chain "21716613^,21716765^";
chr16	juncbase	intron_retention	23505624	23504779	.	-	.	gene_id "intron_retention.441"; transcript_id "intron_retention.441"; gene_name "CUFF.1829"; flanks "23505624-,23504779^"; structure "0,1^2-"; splice_chain ",23505624^23504779-";
chr16	juncbase	jcn_only_AD	4465716	4463405	.	-	.	gene_id "jcn_only_AD.457"; transcript_id "jcn_only_AD.457"; gene_name ""; flanks "4465716-,4463405^"; structure "1^,2^"; splice_chain "4466460^,4465716^";
chr16	juncbase	jcn_only_AD	4464308	4463405	.	-	.	gene_id "jcn_only_AD.458"; transcript_id "jcn_only_AD.458"; gene_name ""; flanks "4464308-,4463405^"; structure "1^,2^"; splice_chain "4466460^,4464308^";
chr16	juncbase	jcn_only_AD	4465767	4463405	.	-	.	gene_id "jcn_only_AD.459"; transcript_id "jcn_only_AD.459"; gene_name ""; flanks "4465767-,4463405^"; structure "1^,2^"; splice_chain "4466460^,4465767^";
chr16	juncbase	jcn_only_AD	4466786	4463405	.	-	.	gene_id "jcn_only_AD.460"; transcript_id "jcn_only_AD.460"; gene_name ""; flanks "4466786-,4463405^"; structure "1^,2^"; splice_chain "4466786^,4466460^";
chr16	juncbase	alternative_donor	21716358	21716490	.	+	.	gene_id "alternative_donor.385"; transcript_id "alternative_donor.385"; gene_name "CUFF.1819"; flanks "21716358-,21716490^"; structure "1^,2^"; splice_chain "21712348^,21716358^";
chr16	juncbase	alternative_donor	21712390	21716490	.	+	.	gene_id "alternative_donor.386"; transcript_id "alternative_donor.386"; gene_name "CUFF.1819"; flanks "21712390-,21716490^"; structure "1^,2^"; splice_chain "21712348^,21712390^";
chr16	juncbase	cassette	67220924	67220560	.	-	.	gene_id "cassette.272"; transcript_id "cassette.272"; gene_name "CUFF.1856"; flanks "67220924-,67220560^"; structure "0,1-2^"; splice_chain ",67220787-67220662^";
chr16	juncbase	cassette	67218805	67218507	.	-	.	gene_id "cassette.273"; transcript_id "cassette.273"; gene_name "CUFF.1856"; flanks "67218805-,67218507^"; structure "0,1-2^"; splice_chain ",67218713-67218589^";
chr16	juncbase	intron_retention	23507035	23505699	.	-	.	gene_id "intron_retention.442"; transcript_id "intron_retention.442"; gene_name ""; flanks "23507035-,23505699^"; structure "0,1^2-"; splice_chain ",23507035^23505699-";
chr16	juncbase	jcn_only_AD	6093176	6400446	.	+	.	gene_id "jcn_only_AD.461"; transcript_id "jcn_only_AD.461"; gene_name ""; flanks "6093176-,6400446^"; structure "1^,2^"; splice_chain "6028178^,6093176^";
chr16	juncbase	jcn_only_AD	6328434	6400446	.	+	.	gene_id "jcn_only_AD.462"; transcript_id "jcn_only_AD.462"; gene_name ""; flanks "6328434-,6400446^"; structure "1^,2^"; splice_chain "6028178^,6328434^";
chr16	juncbase	jcn_only_AD	6028173	6400446	.	+	.	gene_id "jcn_only_AD.463"; transcript_id "jcn_only_AD.463"; gene_name ""; flanks "6028173-,6400446^"; structure "1^,2^"; splice_chain "6028173^,6028178^";
chr16	juncbase	jcn_only_AD	6093173	6400446	.	+	.	gene_id "jcn_only_AD.464"; transcript_id "jcn_only_AD.464"; gene_name ""; flanks "6093173-,6400446^"; structure "1^,2^"; splice_chain "6028178^,6093173^";
chr16	juncbase	cassette	21987564	21994409	.	+	.	gene_id "cassette.274"; transcript_id "cassette.274"; gene_name "CUFF.1821"; flanks "21987564-,21994409^"; structure "0,1-2^"; splice_chain ",21991868-21992021^";
chr16	juncbase	alternative_donor	67233485	67233587	.	+	.	gene_id "alternative_donor.387"; transcript_id "alternative_donor.387"; gene_name "CUFF.1855"; flanks "67233485-,67233587^"; structure "1^,2^"; splice_chain "67233485^,67233496^";
chr16	juncbase	alternative_acceptor	67223586	67223874	.	-	.	gene_id "alternative_acceptor.365"; transcript_id "alternative_acceptor.365"; gene_name "CUFF.1856"; flanks "67223586-,67223874^"; structure "1-,2-"; splice_chain "67223670-,67223586-";
chr16	juncbase	jcn_only_AD	21716358	21716490	.	+	.	gene_id "jcn_only_AD.465"; transcript_id "jcn_only_AD.465"; gene_name "CUFF.1819"; flanks "21716358-,21716490^"; structure "1^,2^"; splice_chain "21712348^,21716358^";
chr16	juncbase	jcn_only_AD	21712390	21716490	.	+	.	gene_id "jcn_only_AD.466"; transcript_id "jcn_only_AD.466"; gene_name "CUFF.1819"; flanks "21712390-,21716490^"; structure "1^,2^"; splice_chain "21712348^,21712390^";
chr16	juncbase	cassette	77769883	77775479	.	+	.	gene_id "cassette.275"; transcript_id "cassette.275"; gene_name "CUFF.1866"; flanks "77769883-,77775479^"; structure "0,1-2^"; splice_chain ",77770547-77770640^";
chr16	juncbase	intron_retention	70389438	70390032	.	+	.	gene_id "intron_retention.443"; transcript_id "intron_retention.443"; gene_name ""; flanks "70389438-,70390032^"; structure "0,1^2-"; splice_chain ",70389438^70390032-";
chr16	juncbase	jcn_only_AA	56226528	56268925	.	+	.	gene_id "jcn_only_AA.489"; transcript_id "jcn_only_AA.489"; gene_name ""; flanks "56226528-,56268925^"; structure "1-,2-"; splice_chain "56268925-,56309843-";
chr16	juncbase	jcn_only_AA	56226528	56247184	.	+	.	gene_id "jcn_only_AA.490"; transcript_id "jcn_only_AA.490"; gene_name ""; flanks "56226528-,56247184^"; structure "1-,2-"; splice_chain "56247184-,56309843-";
chr16	juncbase	cassette	4526488	4556896	.	+	.	gene_id "cassette.276"; transcript_id "cassette.276"; gene_name "CUFF.1801"; flanks "4526488-,4556896^"; structure "0,1-2^"; splice_chain ",4555485-4555611^";
chr16	juncbase	intron_retention	67223874	67223670	.	-	.	gene_id "intron_retention.444"; transcript_id "intron_retention.444"; gene_name "CUFF.1856"; flanks "67223874-,67223670^"; structure "0,1^2-"; splice_chain ",67223874^67223670-";
chr16	juncbase	jcn_only_AD	4466460	4463405	.	-	.	gene_id "jcn_only_AD.467"; transcript_id "jcn_only_AD.467"; gene_name "CUFF.1800"; flanks "4466460-,4463405^"; structure "1^,2^"; splice_chain "4466786^,4466460^";
chr16	juncbase	jcn_only_AD	4465716	4463405	.	-	.	gene_id "jcn_only_AD.468"; transcript_id "jcn_only_AD.468"; gene_name "CUFF.1800"; flanks "4465716-,4463405^"; structure "1^,2^"; splice_chain "4466786^,4465716^";
chr16	juncbase	jcn_only_AD	4464308	4463405	.	-	.	gene_id "jcn_only_AD.469"; transcript_id "jcn_only_AD.469"; gene_name "CUFF.1800"; flanks "4464308-,4463405^"; structure "1^,2^"; splice_chain "4466786^,4464308^";
chr16	juncbase	jcn_only_AD	4465767	4463405	.	-	.	gene_id "jcn_only_AD.470"; transcript_id "jcn_only_AD.470"; gene_name "CUFF.1800"; flanks "4465767-,4463405^"; structure "1^,2^"; splice_chain "4466786^,4465767^";
chr16	juncbase	jcn_only_AD	23530908	23507099	.	-	.	gene_id "jcn_only_AD.471"; transcript_id "jcn_only_AD.471"; gene_name ""; flanks "23530908-,23507099^"; structure "1^,2^"; splice_chain "23530908^,23521642^";
chr16	juncbase	jcn_only_AD	3115688	3115782	.	+	.	gene_id "jcn_only_AD.472"; transcript_id "jcn_only_AD.472"; gene_name ""; flanks "3115688-,3115782^"; structure "1^,2^"; splice_chain "3115495^,3115688^";
chr16	juncbase	jcn_only_AD	3115711	3115782	.	+	.	gene_id "jcn_only_AD.473"; transcript_id "jcn_only_AD.473"; gene_name ""; flanks "3115711-,3115782^"; structure "1^,2^"; splice_chain "3115495^,3115711^";
chr16	juncbase	intron_retention	21730512	21730708	.	+	.	gene_id "intron_retention.445"; transcript_id "intron_retention.445"; gene_name "CUFF.1819"; flanks "21730512-,21730708^"; structure "0,1^2-"; splice_chain ",21730512^21730708-";
chr16	juncbase	intron_retention	19592975	19612986	.	+	.	gene_id "intron_retention.446"; transcript_id "intron_retention.446"; gene_name ""; flanks "19592975-,19612986^"; structure "0,1^2-"; splice_chain ",19592975^19612986-";
chr16	juncbase	jcn_only_AD	57513773	57513597	.	-	.	gene_id "jcn_only_AD.474"; transcript_id "jcn_only_AD.474"; gene_name ""; flanks "57513773-,57513597^"; structure "1^,2^"; splice_chain "57517870^,57513773^";
chr16	juncbase	jcn_only_AD	57513757	57513597	.	-	.	gene_id "jcn_only_AD.475"; transcript_id "jcn_only_AD.475"; gene_name ""; flanks "57513757-,57513597^"; structure "1^,2^"; splice_chain "57517870^,57513757^";
chr16	juncbase	intron_retention	2203223	2203579	.	+	.	gene_id "intron_retention.447"; transcript_id "intron_retention.447"; gene_name "CUFF.1777"; flanks "2203223-,2203579^"; structure "0,1^2-"; splice_chain ",2203223^2203579-";
chr16	juncbase	cassette	3117614	3118181	.	+	.	gene_id "cassette.277"; transcript_id "cassette.277"; gene_name "CUFF.1783"; flanks "3117614-,3118181^"; structure "0,1-2^"; splice_chain ",3117985-3118011^";
chr16	juncbase	cassette	3117416	3118181	.	+	.	gene_id "cassette.278"; transcript_id "cassette.278"; gene_name "CUFF.1783"; flanks "3117416-,3118181^"; structure "0,1-2^"; splice_chain ",3117985-3118011^";
chr16	juncbase	jcn_only_AD	4411986	4411470	.	-	.	gene_id "jcn_only_AD.476"; transcript_id "jcn_only_AD.476"; gene_name "CUFF.1800"; flanks "4411986-,4411470^"; structure "1^,2^"; splice_chain "4411986^,4411750^";
chr16	juncbase	cassette	70389438	70395321	.	+	.	gene_id "cassette.279"; transcript_id "cassette.279"; gene_name "CUFF.1861"; flanks "70389438-,70395321^"; structure "0,1-2^"; splice_chain ",70390015-70390150^";
chr16	juncbase	jcn_only_AD	3115711	3115785	.	+	.	gene_id "jcn_only_AD.477"; transcript_id "jcn_only_AD.477"; gene_name "CUFF.1783"; flanks "3115711-,3115785^"; structure "1^,2^"; splice_chain "3115495^,3115711^";
chr16	juncbase	jcn_only_AD	3115688	3115785	.	+	.	gene_id "jcn_only_AD.478"; transcript_id "jcn_only_AD.478"; gene_name "CUFF.1783"; flanks "3115688-,3115785^"; structure "1^,2^"; splice_chain "3115495^,3115688^";
chr16	juncbase	jcn_only_AD	3115656	3115785	.	+	.	gene_id "jcn_only_AD.479"; transcript_id "jcn_only_AD.479"; gene_name "CUFF.1783"; flanks "3115656-,3115785^"; structure "1^,2^"; splice_chain "3115495^,3115656^";
chr16	juncbase	intron_retention	4409297	4408484	.	-	.	gene_id "intron_retention.448"; transcript_id "intron_retention.448"; gene_name "CUFF.1800"; flanks "4409297-,4408484^"; structure "0,1^2-"; splice_chain ",4409297^4408484-";
chr16	juncbase	alternative_donor	70265340	70265061	.	-	.	gene_id "alternative_donor.388"; transcript_id "alternative_donor.388"; gene_name "CUFF.1860"; flanks "70265340-,70265061^"; structure "1^,2^"; splice_chain "70265340^,70265226^";
chr16	juncbase	intron_retention	67970597	67970388	.	-	.	gene_id "intron_retention.449"; transcript_id "intron_retention.449"; gene_name "CUFF.1858"; flanks "67970597-,67970388^"; structure "0,1^2-"; splice_chain ",67970597^67970388-";
chr16	juncbase	jcn_only_AD	23505624	23504779	.	-	.	gene_id "jcn_only_AD.480"; transcript_id "jcn_only_AD.480"; gene_name "CUFF.1829"; flanks "23505624-,23504779^"; structure "1^,2^"; splice_chain "23505624^,23505620^";
chr16	juncbase	intron_retention	4466786	4466601	.	-	.	gene_id "intron_retention.450"; transcript_id "intron_retention.450"; gene_name ""; flanks "4466786-,4466601^"; structure "0,1^2-"; splice_chain ",4466786^4466601-";
chr16	juncbase	jcn_only_AA	2203223	2203579	.	+	.	gene_id "jcn_only_AA.491"; transcript_id "jcn_only_AA.491"; gene_name "CUFF.1777"; flanks "2203223-,2203579^"; structure "1-,2-"; splice_chain "2203320-,2203579-";
chr16	juncbase	jcn_only_AD	70265340	70265061	.	-	.	gene_id "jcn_only_AD.481"; transcript_id "jcn_only_AD.481"; gene_name "CUFF.1860"; flanks "70265340-,70265061^"; structure "1^,2^"; splice_chain "70265340^,70265226^";
chr16	juncbase	cassette	31374695	31382405	.	+	.	gene_id "cassette.280"; transcript_id "cassette.280"; gene_name "CUFF.1838"; flanks "31374695-,31382405^"; structure "0,1-2^"; splice_chain ",31381302-31381419^";
chr16	juncbase	intron_retention	21987564	21991868	.	+	.	gene_id "intron_retention.451"; transcript_id "intron_retention.451"; gene_name ""; flanks "21987564-,21991868^"; structure "0,1^2-"; splice_chain ",21987564^21991868-";
chr16	juncbase	jcn_only_AD	6093176	6400446	.	+	.	gene_id "jcn_only_AD.482"; transcript_id "jcn_only_AD.482"; gene_name ""; flanks "6093176-,6400446^"; structure "1^,2^"; splice_chain "6093173^,6093176^";
chr16	juncbase	jcn_only_AD	6028178	6400446	.	+	.	gene_id "jcn_only_AD.483"; transcript_id "jcn_only_AD.483"; gene_name ""; flanks "6028178-,6400446^"; structure "1^,2^"; splice_chain "6028178^,6093173^";
chr16	juncbase	jcn_only_AD	6328434	6400446	.	+	.	gene_id "jcn_only_AD.484"; transcript_id "jcn_only_AD.484"; gene_name ""; flanks "6328434-,6400446^"; structure "1^,2^"; splice_chain "6093173^,6328434^";
chr16	juncbase	jcn_only_AD	6028173	6400446	.	+	.	gene_id "jcn_only_AD.485"; transcript_id "jcn_only_AD.485"; gene_name ""; flanks "6028173-,6400446^"; structure "1^,2^"; splice_chain "6028173^,6093173^";
chr16	juncbase	jcn_only_AA	67223586	67223874	.	-	.	gene_id "jcn_only_AA.492"; transcript_id "jcn_only_AA.492"; gene_name "CUFF.1856"; flanks "67223586-,67223874^"; structure "1-,2-"; splice_chain "67223670-,67223586-";
chr16	juncbase	alternative_acceptor	31368422	31368655	.	+	.	gene_id "alternative_acceptor.366"; transcript_id "alternative_acceptor.366"; gene_name "CUFF.1838"; flanks "31368422-,31368655^"; structure "1-,2-"; splice_chain "31368574-,31368655-";
chr16	juncbase	cassette	4408368	4407260	.	-	.	gene_id "cassette.281"; transcript_id "cassette.281"; gene_name "CUFF.1800"; flanks "4408368-,4407260^"; structure "0,1-2^"; splice_chain ",4408104-4407969^";
chr16	juncbase	jcn_only_AD	67234709	67234793	.	+	.	gene_id "jcn_only_AD.486"; transcript_id "jcn_only_AD.486"; gene_name "CUFF.1855"; flanks "67234709-,67234793^"; structure "1^,2^"; splice_chain "67234709^,67234711^";
chr16	juncbase	cassette	70390150	70398446	.	+	.	gene_id "cassette.282"; transcript_id "cassette.282"; gene_name "CUFF.1861"; flanks "70390150-,70398446^"; structure "0,1-2^"; splice_chain ",70395321-70395413^";
chr16	juncbase	alternative_donor	4465716	4463405	.	-	.	gene_id "alternative_donor.389"; transcript_id "alternative_donor.389"; gene_name ""; flanks "4465716-,4463405^"; structure "1^,2^"; splice_chain "4466460^,4465716^";
chr16	juncbase	alternative_donor	4464308	4463405	.	-	.	gene_id "alternative_donor.390"; transcript_id "alternative_donor.390"; gene_name ""; flanks "4464308-,4463405^"; structure "1^,2^"; splice_chain "4466460^,4464308^";
chr16	juncbase	alternative_donor	4465767	4463405	.	-	.	gene_id "alternative_donor.391"; transcript_id "alternative_donor.391"; gene_name ""; flanks "4465767-,4463405^"; structure "1^,2^"; splice_chain "4466460^,4465767^";
chr16	juncbase	alternative_donor	4466786	4463405	.	-	.	gene_id "alternative_donor.392"; transcript_id "alternative_donor.392"; gene_name ""; flanks "4466786-,4463405^"; structure "1^,2^"; splice_chain "4466786^,4466460^";
chr16	juncbase	jcn_only_AA	57509869	57513354	.	-	.	gene_id "jcn_only_AA.493"; transcript_id "jcn_only_AA.493"; gene_name "CUFF.1849"; flanks "57509869-,57513354^"; structure "1-,2-"; splice_chain "57512574-,57509869-";
chr16	juncbase	intron_retention	89789591	89789668	.	+	.	gene_id "intron_retention.452"; transcript_id "intron_retention.452"; gene_name "CUFF.1874"; flanks "89789591-,89789668^"; structure "0,1^2-"; splice_chain ",89789591^89789668-";
chr16	juncbase	jcn_only_AA	23504842	23505624	.	-	.	gene_id "jcn_only_AA.494"; transcript_id "jcn_only_AA.494"; gene_name "CUFF.1829"; flanks "23504842-,23505624^"; structure "1-,2-"; splice_chain "23504842-,23504779-";
chr16	juncbase	jcn_only_AA	23504908	23505624	.	-	.	gene_id "jcn_only_AA.495"; transcript_id "jcn_only_AA.495"; gene_name "CUFF.1829"; flanks "23504908-,23505624^"; structure "1-,2-"; splice_chain "23504908-,23504779-";
chr16	juncbase	jcn_only_AA	4445340	4455492	.	-	.	gene_id "jcn_only_AA.496"; transcript_id "jcn_only_AA.496"; gene_name "CUFF.1800"; flanks "4445340-,4455492^"; structure "1-,2-"; splice_chain "4447451-,4445340-";
chr16	juncbase	cassette	75579724	75576581	.	-	.	gene_id "cassette.283"; transcript_id "cassette.283"; gene_name "CUFF.1863"; flanks "75579724-,75576581^"; structure "0,1-2^"; splice_chain ",75579393-75579250^";
chr16	juncbase	jcn_only_AD	6028178	6400446	.	+	.	gene_id "jcn_only_AD.487"; transcript_id "jcn_only_AD.487"; gene_name ""; flanks "6028178-,6400446^"; structure "1^,2^"; splice_chain "6028178^,6093176^";
chr16	juncbase	jcn_only_AD	6328434	6400446	.	+	.	gene_id "jcn_only_AD.488"; transcript_id "jcn_only_AD.488"; gene_name ""; flanks "6328434-,6400446^"; structure "1^,2^"; splice_chain "6093176^,6328434^";
chr16	juncbase	jcn_only_AD	6028173	6400446	.	+	.	gene_id "jcn_only_AD.489"; transcript_id "jcn_only_AD.489"; gene_name ""; flanks "6028173-,6400446^"; structure "1^,2^"; splice_chain "6028173^,6093176^";
chr16	juncbase	jcn_only_AD	6093173	6400446	.	+	.	gene_id "jcn_only_AD.490"; transcript_id "jcn_only_AD.490"; gene_name ""; flanks "6093173-,6400446^"; structure "1^,2^"; splice_chain "6093173^,6093176^";
chr16	juncbase	jcn_only_AA	76170263	76181458	.	-	.	gene_id "jcn_only_AA.497"; transcript_id "jcn_only_AA.497"; gene_name "CUFF.1865"; flanks "76170263-,76181458^"; structure "1-,2-"; splice_chain "76174301-,76170263-";
chr16	juncbase	alternative_acceptor	19580913	19584446	.	+	.	gene_id "alternative_acceptor.367"; transcript_id "alternative_acceptor.367"; gene_name "CUFF.1815"; flanks "19580913-,19584446^"; structure "1-,2-"; splice_chain "19584441-,19584446-";
chr16	juncbase	intron_retention	57513757	57513597	.	-	.	gene_id "intron_retention.453"; transcript_id "intron_retention.453"; gene_name ""; flanks "57513757-,57513597^"; structure "0,1^2-"; splice_chain ",57513757^57513597-";
chr16	juncbase	jcn_only_AA	586142	596817	.	+	.	gene_id "jcn_only_AA.498"; transcript_id "jcn_only_AA.498"; gene_name "CUFF.1768"; flanks "586142-,596817^"; structure "1-,2-"; splice_chain "587134-,596817-";
chr16	juncbase	jcn_only_AA	67223083	67223534	.	-	.	gene_id "jcn_only_AA.499"; transcript_id "jcn_only_AA.499"; gene_name "CUFF.1856"; flanks "67223083-,67223534^"; structure "1-,2-"; splice_chain "67223098-,67223083-";
chr16	juncbase	jcn_only_AD	4466460	4463405	.	-	.	gene_id "jcn_only_AD.491"; transcript_id "jcn_only_AD.491"; gene_name "CUFF.1800"; flanks "4466460-,4463405^"; structure "1^,2^"; splice_chain "4466460^,4465767^";
chr16	juncbase	jcn_only_AD	4465716	4463405	.	-	.	gene_id "jcn_only_AD.492"; transcript_id "jcn_only_AD.492"; gene_name "CUFF.1800"; flanks "4465716-,4463405^"; structure "1^,2^"; splice_chain "4465767^,4465716^";
chr16	juncbase	jcn_only_AD	4464308	4463405	.	-	.	gene_id "jcn_only_AD.493"; transcript_id "jcn_only_AD.493"; gene_name "CUFF.1800"; flanks "4464308-,4463405^"; structure "1^,2^"; splice_chain "4465767^,4464308^";
chr16	juncbase	jcn_only_AD	4466786	4463405	.	-	.	gene_id "jcn_only_AD.494"; transcript_id "jcn_only_AD.494"; gene_name "CUFF.1800"; flanks "4466786-,4463405^"; structure "1^,2^"; splice_chain "4466786^,4465767^";
chr16	juncbase	jcn_only_AD	21712348	21716490	.	+	.	gene_id "jcn_only_AD.495"; transcript_id "jcn_only_AD.495"; gene_name "CUFF.1819"; flanks "21712348-,21716490^"; structure "1^,2^"; splice_chain "21712348^,21716358^";
chr16	juncbase	jcn_only_AD	21712390	21716490	.	+	.	gene_id "jcn_only_AD.496"; transcript_id "jcn_only_AD.496"; gene_name "CUFF.1819"; flanks "21712390-,21716490^"; structure "1^,2^"; splice_chain "21712390^,21716358^";
chr16	juncbase	cassette	2200052	2201570	.	+	.	gene_id "cassette.284"; transcript_id "cassette.284"; gene_name "CUFF.1777"; flanks "2200052-,2201570^"; structure "0,1-2^"; splice_chain ",2201131-2201316^";
chr16	juncbase	intron_retention	57521158	57513600	.	-	.	gene_id "intron_retention.454"; transcript_id "intron_retention.454"; gene_name ""; flanks "57521158-,57513600^"; structure "0,1^2-"; splice_chain ",57521158^57513600-";
chr16	juncbase	intron_retention	67223874	67223586	.	-	.	gene_id "intron_retention.455"; transcript_id "intron_retention.455"; gene_name "CUFF.1856"; flanks "67223874-,67223586^"; structure "0,1^2-"; splice_chain ",67223874^67223586-";
chr16	juncbase	intron_retention	30006424	30006164	.	-	.	gene_id "intron_retention.456"; transcript_id "intron_retention.456"; gene_name ""; flanks "30006424-,30006164^"; structure "0,1^2-"; splice_chain ",30006424^30006164-";
chr16	juncbase	jcn_only_AD	70274910	70268195	.	-	.	gene_id "jcn_only_AD.497"; transcript_id "jcn_only_AD.497"; gene_name "CUFF.1800"; flanks "70274910-,70268195^"; structure "1^,2^"; splice_chain "70274910^,70268900^";
chr16	juncbase	cassette	19659204	19663298	.	+	.	gene_id "cassette.285"; transcript_id "cassette.285"; gene_name "CUFF.1815"; flanks "19659204-,19663298^"; structure "0,1-2^"; splice_chain ",19661704-19661781^";
chr16	juncbase	cassette	3117416	3118181	.	+	.	gene_id "cassette.286"; transcript_id "cassette.286"; gene_name "CUFF.1783"; flanks "3117416-,3118181^"; structure "0,1-2^"; splice_chain ",3117555-3117614^";
chr16	juncbase	cassette	3117416	3117985	.	+	.	gene_id "cassette.287"; transcript_id "cassette.287"; gene_name "CUFF.1783"; flanks "3117416-,3117985^"; structure "0,1-2^"; splice_chain ",3117555-3117614^";
chr16	juncbase	jcn_only_AD	23507035	23505699	.	-	.	gene_id "jcn_only_AD.498"; transcript_id "jcn_only_AD.498"; gene_name "CUFF.1829"; flanks "23507035-,23505699^"; structure "1^,2^"; splice_chain "23507035^,23507010^";
chr16	juncbase	jcn_only_AD	23507015	23505699	.	-	.	gene_id "jcn_only_AD.499"; transcript_id "jcn_only_AD.499"; gene_name "CUFF.1829"; flanks "23507015-,23505699^"; structure "1^,2^"; splice_chain "23507015^,23507010^";
chr16	juncbase	intron_retention	70399034	70399988	.	+	.	gene_id "intron_retention.457"; transcript_id "intron_retention.457"; gene_name "CUFF.1861"; flanks "70399034-,70399988^"; structure "0,1^2-"; splice_chain ",70399034^70399988-";
chr16	juncbase	alternative_acceptor	19576272	19580746	.	+	.	gene_id "alternative_acceptor.368"; transcript_id "alternative_acceptor.368"; gene_name "CUFF.1815"; flanks "19576272-,19580746^"; structure "1-,2-"; splice_chain "19580566-,19580746-";
chr16	juncbase	intron_retention	14020613	14021885	.	+	.	gene_id "intron_retention.458"; transcript_id "intron_retention.458"; gene_name ""; flanks "14020613-,14021885^"; structure "0,1^2-"; splice_chain ",14020613^14021885-";
chr16	juncbase	jcn_only_AD	75589702	75579852	.	-	.	gene_id "jcn_only_AD.500"; transcript_id "jcn_only_AD.500"; gene_name "CUFF.1863"; flanks "75589702-,75579852^"; structure "1^,2^"; splice_chain "75589702^,75589117^";
chr16	juncbase	intron_retention	70398548	70398920	.	+	.	gene_id "intron_retention.459"; transcript_id "intron_retention.459"; gene_name "CUFF.1861"; flanks "70398548-,70398920^"; structure "0,1^2-"; splice_chain ",70398548^70398920-";
chr16	juncbase	alternative_donor	70267327	70266707	.	-	.	gene_id "alternative_donor.393"; transcript_id "alternative_donor.393"; gene_name "CUFF.1860"; flanks "70267327-,70266707^"; structure "1^,2^"; splice_chain "70267327^,70267316^";
chr16	juncbase	jcn_only_AA	70399034	70399988	.	+	.	gene_id "jcn_only_AA.500"; transcript_id "jcn_only_AA.500"; gene_name "CUFF.1855,CUFF.1861"; flanks "70399034-,70399988^"; structure "1-,2-"; splice_chain "70399836-,70399988-";
chr16	juncbase	alternative_acceptor	56226528	56268925	.	+	.	gene_id "alternative_acceptor.369"; transcript_id "alternative_acceptor.369"; gene_name ""; flanks "56226528-,56268925^"; structure "1-,2-"; splice_chain "56268925-,56309843-";
chr16	juncbase	alternative_acceptor	56226528	56247184	.	+	.	gene_id "alternative_acceptor.370"; transcript_id "alternative_acceptor.370"; gene_name ""; flanks "56226528-,56247184^"; structure "1-,2-"; splice_chain "56247184-,56309843-";
chr16	juncbase	alternative_acceptor	57513597	57517870	.	-	.	gene_id "alternative_acceptor.371"; transcript_id "alternative_acceptor.371"; gene_name ""; flanks "57513597-,57517870^"; structure "1-,2-"; splice_chain "57513600-,57513597-";
chr16	juncbase	alternative_acceptor	4412132	4445290	.	-	.	gene_id "alternative_acceptor.372"; transcript_id "alternative_acceptor.372"; gene_name "CUFF.1800"; flanks "4412132-,4445290^"; structure "1-,2-"; splice_chain "4438632-,4412132-";
chr16	juncbase	jcn_only_AA	19710970	19716438	.	+	.	gene_id "jcn_only_AA.501"; transcript_id "jcn_only_AA.501"; gene_name "CUFF.1866"; flanks "19710970-,19716438^"; structure "1-,2-"; splice_chain "19711700-,19716438-";
chr16	juncbase	jcn_only_AA	21737979	21739562	.	+	.	gene_id "jcn_only_AA.502"; transcript_id "jcn_only_AA.502"; gene_name "CUFF.1819"; flanks "21737979-,21739562^"; structure "1-,2-"; splice_chain "21738433-,21739562-";
chr16	juncbase	jcn_only_AD	23507010	23505699	.	-	.	gene_id "jcn_only_AD.501"; transcript_id "jcn_only_AD.501"; gene_name "CUFF.1829"; flanks "23507010-,23505699^"; structure "1^,2^"; splice_chain "23507035^,23507010^";
chr16	juncbase	jcn_only_AD	23507015	23505699	.	-	.	gene_id "jcn_only_AD.502"; transcript_id "jcn_only_AD.502"; gene_name "CUFF.1829"; flanks "23507015-,23505699^"; structure "1^,2^"; splice_chain "23507035^,23507015^";
chr16	juncbase	intron_retention	602530	602605	.	+	.	gene_id "intron_retention.460"; transcript_id "intron_retention.460"; gene_name "CUFF.1768"; flanks "602530-,602605^"; structure "0,1^2-"; splice_chain ",602530^602605-";
chr16	juncbase	alternative_donor	4466460	4463405	.	-	.	gene_id "alternative_donor.394"; transcript_id "alternative_donor.394"; gene_name "CUFF.1800"; flanks "4466460-,4463405^"; structure "1^,2^"; splice_chain "4466460^,4465767^";
chr16	juncbase	alternative_donor	4465716	4463405	.	-	.	gene_id "alternative_donor.395"; transcript_id "alternative_donor.395"; gene_name "CUFF.1800"; flanks "4465716-,4463405^"; structure "1^,2^"; splice_chain "4465767^,4465716^";
chr16	juncbase	alternative_donor	4464308	4463405	.	-	.	gene_id "alternative_donor.396"; transcript_id "alternative_donor.396"; gene_name "CUFF.1800"; flanks "4464308-,4463405^"; structure "1^,2^"; splice_chain "4465767^,4464308^";
chr16	juncbase	alternative_donor	4466786	4463405	.	-	.	gene_id "alternative_donor.397"; transcript_id "alternative_donor.397"; gene_name "CUFF.1800"; flanks "4466786-,4463405^"; structure "1^,2^"; splice_chain "4466786^,4465767^";
chr16	juncbase	alternative_acceptor	76170263	76181458	.	-	.	gene_id "alternative_acceptor.373"; transcript_id "alternative_acceptor.373"; gene_name "CUFF.1865"; flanks "76170263-,76181458^"; structure "1-,2-"; splice_chain "76174301-,76170263-";
chr16	juncbase	intron_retention	3117614	3117985	.	+	.	gene_id "intron_retention.461"; transcript_id "intron_retention.461"; gene_name ""; flanks "3117614-,3117985^"; structure "0,1^2-"; splice_chain ",3117614^3117985-";
chr16	juncbase	alternative_donor	3115711	3115785	.	+	.	gene_id "alternative_donor.398"; transcript_id "alternative_donor.398"; gene_name "CUFF.1783"; flanks "3115711-,3115785^"; structure "1^,2^"; splice_chain "3115495^,3115711^";
chr16	juncbase	alternative_donor	3115688	3115785	.	+	.	gene_id "alternative_donor.399"; transcript_id "alternative_donor.399"; gene_name "CUFF.1783"; flanks "3115688-,3115785^"; structure "1^,2^"; splice_chain "3115495^,3115688^";
chr16	juncbase	alternative_donor	3115656	3115785	.	+	.	gene_id "alternative_donor.400"; transcript_id "alternative_donor.400"; gene_name "CUFF.1783"; flanks "3115656-,3115785^"; structure "1^,2^"; splice_chain "3115495^,3115656^";
chr16	juncbase	jcn_only_AD	63651597	63565208	.	-	.	gene_id "jcn_only_AD.503"; transcript_id "jcn_only_AD.503"; gene_name "CUFF.1852"; flanks "63651597-,63565208^"; structure "1^,2^"; splice_chain "63651597^,63566721^";
chr16	juncbase	alternative_donor	70380951	70384460	.	+	.	gene_id "alternative_donor.401"; transcript_id "alternative_donor.401"; gene_name "CUFF.1861"; flanks "70380951-,70384460^"; structure "1^,2^"; splice_chain "70380951^,70381893^";
chr16	juncbase	alternative_donor	23530908	23507099	.	-	.	gene_id "alternative_donor.402"; transcript_id "alternative_donor.402"; gene_name ""; flanks "23530908-,23507099^"; structure "1^,2^"; splice_chain "23530908^,23521642^";
chr16	juncbase	alternative_donor	70255157	70254783	.	-	.	gene_id "alternative_donor.403"; transcript_id "alternative_donor.403"; gene_name "CUFF.1829,CUFF.1860"; flanks "70255157-,70254783^"; structure "1^,2^"; splice_chain "70255157^,70255153^";
chr16	juncbase	intron_retention	57507525	57507407	.	-	.	gene_id "intron_retention.462"; transcript_id "intron_retention.462"; gene_name ""; flanks "57507525-,57507407^"; structure "0,1^2-"; splice_chain ",57507525^57507407-";
chr16	juncbase	jcn_only_AA	56226528	56309843	.	+	.	gene_id "jcn_only_AA.503"; transcript_id "jcn_only_AA.503"; gene_name "CUFF.1841"; flanks "56226528-,56309843^"; structure "1-,2-"; splice_chain "56247184-,56309843-";
chr16	juncbase	jcn_only_AA	56226528	56268925	.	+	.	gene_id "jcn_only_AA.504"; transcript_id "jcn_only_AA.504"; gene_name "CUFF.1841"; flanks "56226528-,56268925^"; structure "1-,2-"; splice_chain "56247184-,56268925-";
chr16	juncbase	jcn_only_AA	63565208	63651597	.	-	.	gene_id "jcn_only_AA.505"; transcript_id "jcn_only_AA.505"; gene_name "CUFF.1852"; flanks "63565208-,63651597^"; structure "1-,2-"; splice_chain "63566835-,63565208-";
chr16	juncbase	cassette	56370772	56388778	.	+	.	gene_id "cassette.288"; transcript_id "cassette.288"; gene_name "CUFF.1841"; flanks "56370772-,56388778^"; structure "0,1-2^"; splice_chain ",56385296-56385449^";
chr16	juncbase	alternative_donor	67234709	67234793	.	+	.	gene_id "alternative_donor.404"; transcript_id "alternative_donor.404"; gene_name "CUFF.1855"; flanks "67234709-,67234793^"; structure "1^,2^"; splice_chain "67234709^,67234711^";
chr16	juncbase	jcn_only_AA	57513597	57513773	.	-	.	gene_id "jcn_only_AA.506"; transcript_id "jcn_only_AA.506"; gene_name "CUFF.1849"; flanks "57513597-,57513773^"; structure "1-,2-"; splice_chain "57513600-,57513597-";
chr16	juncbase	cassette	57509762	57509131	.	-	.	gene_id "cassette.289"; transcript_id "cassette.289"; gene_name "CUFF.1849"; flanks "57509762-,57509131^"; structure "0,1-2^"; splice_chain ",57509532-57509418^";
chr16	juncbase	alternative_donor	3115711	3115785	.	+	.	gene_id "alternative_donor.405"; transcript_id "alternative_donor.405"; gene_name "CUFF.1783"; flanks "3115711-,3115785^"; structure "1^,2^"; splice_chain "3115688^,3115711^";
chr16	juncbase	alternative_donor	3115495	3115785	.	+	.	gene_id "alternative_donor.406"; transcript_id "alternative_donor.406"; gene_name "CUFF.1783"; flanks "3115495-,3115785^"; structure "1^,2^"; splice_chain "3115495^,3115688^";
chr16	juncbase	alternative_donor	3115656	3115785	.	+	.	gene_id "alternative_donor.407"; transcript_id "alternative_donor.407"; gene_name "CUFF.1783"; flanks "3115656-,3115785^"; structure "1^,2^"; splice_chain "3115656^,3115688^";
chr16	juncbase	intron_retention	3115688	3115785	.	+	.	gene_id "intron_retention.463"; transcript_id "intron_retention.463"; gene_name ""; flanks "3115688-,3115785^"; structure "0,1^2-"; splice_chain ",3115688^3115785-";
chr16	juncbase	jcn_only_AA	31368422	31368655	.	+	.	gene_id "jcn_only_AA.507"; transcript_id "jcn_only_AA.507"; gene_name "CUFF.1838"; flanks "31368422-,31368655^"; structure "1-,2-"; splice_chain "31368574-,31368655-";
chr16	juncbase	intron_retention	3119110	3119282	.	+	.	gene_id "intron_retention.464"; transcript_id "intron_retention.464"; gene_name ""; flanks "3119110-,3119282^"; structure "0,1^2-"; splice_chain ",3119110^3119282-";
chr16	juncbase	intron_retention	105882	106539	.	+	.	gene_id "intron_retention.465"; transcript_id "intron_retention.465"; gene_name "CUFF.1767"; flanks "105882-,106539^"; structure "0,1^2-"; splice_chain ",105882^106539-";
chr16	juncbase	cassette	67233904	67234354	.	+	.	gene_id "cassette.290"; transcript_id "cassette.290"; gene_name "CUFF.1855"; flanks "67233904-,67234354^"; structure "0,1-2^"; splice_chain ",67234095-67234264^";
chr16	juncbase	alternative_acceptor	56226528	56309843	.	+	.	gene_id "alternative_acceptor.374"; transcript_id "alternative_acceptor.374"; gene_name "CUFF.1841"; flanks "56226528-,56309843^"; structure "1-,2-"; splice_chain "56247184-,56309843-";
chr16	juncbase	alternative_acceptor	56226528	56268925	.	+	.	gene_id "alternative_acceptor.375"; transcript_id "alternative_acceptor.375"; gene_name "CUFF.1841"; flanks "56226528-,56268925^"; structure "1-,2-"; splice_chain "56247184-,56268925-";
chr16	juncbase	intron_retention	67218805	67218713	.	-	.	gene_id "intron_retention.466"; transcript_id "intron_retention.466"; gene_name "CUFF.1856"; flanks "67218805-,67218713^"; structure "0,1^2-"; splice_chain ",67218805^67218713-";
chr16	juncbase	intron_retention	31382818	31382951	.	+	.	gene_id "intron_retention.467"; transcript_id "intron_retention.467"; gene_name ""; flanks "31382818-,31382951^"; structure "0,1^2-"; splice_chain ",31382818^31382951-";
chr16	juncbase	intron_retention	3115656	3115785	.	+	.	gene_id "intron_retention.468"; transcript_id "intron_retention.468"; gene_name ""; flanks "3115656-,3115785^"; structure "0,1^2-"; splice_chain ",3115656^3115785-";
chr16	juncbase	alternative_acceptor	23504779	23505624	.	-	.	gene_id "alternative_acceptor.376"; transcript_id "alternative_acceptor.376"; gene_name "CUFF.1829"; flanks "23504779-,23505624^"; structure "1-,2-"; splice_chain "23504842-,23504779-";
chr16	juncbase	alternative_acceptor	23504908	23505624	.	-	.	gene_id "alternative_acceptor.377"; transcript_id "alternative_acceptor.377"; gene_name "CUFF.1829"; flanks "23504908-,23505624^"; structure "1-,2-"; splice_chain "23504908-,23504842-";
chr16	juncbase	jcn_only_AD	4475479	4466962	.	-	.	gene_id "jcn_only_AD.504"; transcript_id "jcn_only_AD.504"; gene_name "CUFF.1856"; flanks "4475479-,4466962^"; structure "1^,2^"; splice_chain "4475479^,4470360^";
chr16	juncbase	cassette	4466460	4462431	.	-	.	gene_id "cassette.291"; transcript_id "cassette.291"; gene_name "CUFF.1800"; flanks "4466460-,4462431^"; structure "0,1-2^"; splice_chain ",4463405-4463309^";
chr16	juncbase	intron_retention	70395413	70398446	.	+	.	gene_id "intron_retention.469"; transcript_id "intron_retention.469"; gene_name "CUFF.1861"; flanks "70395413-,70398446^"; structure "0,1^2-"; splice_chain ",70395413^70398446-";
chr16	juncbase	alternative_acceptor	57513597	57513773	.	-	.	gene_id "alternative_acceptor.378"; transcript_id "alternative_acceptor.378"; gene_name "CUFF.1849"; flanks "57513597-,57513773^"; structure "1-,2-"; splice_chain "57513600-,57513597-";
chr16	juncbase	intron_retention	4408368	4408104	.	-	.	gene_id "intron_retention.470"; transcript_id "intron_retention.470"; gene_name "CUFF.1800"; flanks "4408368-,4408104^"; structure "0,1^2-"; splice_chain ",4408368^4408104-";
chr16	juncbase	intron_retention	23505624	23504842	.	-	.	gene_id "intron_retention.471"; transcript_id "intron_retention.471"; gene_name ""; flanks "23505624-,23504842^"; structure "0,1^2-"; splice_chain ",23505624^23504842-";
chr16	juncbase	intron_retention	3115688	3115782	.	+	.	gene_id "intron_retention.472"; transcript_id "intron_retention.472"; gene_name ""; flanks "3115688-,3115782^"; structure "0,1^2-"; splice_chain ",3115688^3115782-";
chr16	juncbase	jcn_only_AA	87807147	87811474	.	-	.	gene_id "jcn_only_AA.508"; transcript_id "jcn_only_AA.508"; gene_name "CUFF.1873"; flanks "87807147-,87811474^"; structure "1-,2-"; splice_chain "87807195-,87807147-";
chr16	juncbase	cassette	70390150	70398920	.	+	.	gene_id "cassette.292"; transcript_id "cassette.292"; gene_name "CUFF.1861"; flanks "70390150-,70398920^"; structure "0,1-2^"; splice_chain ",70398446-70398548^";
chr16	juncbase	jcn_only_AA	19663412	19680482	.	+	.	gene_id "jcn_only_AA.509"; transcript_id "jcn_only_AA.509"; gene_name "CUFF.1815"; flanks "19663412-,19680482^"; structure "1-,2-"; splice_chain "19663677-,19680482-";
chr16	juncbase	alternative_donor	3115711	3115785	.	+	.	gene_id "alternative_donor.408"; transcript_id "alternative_donor.408"; gene_name "CUFF.1783"; flanks "3115711-,3115785^"; structure "1^,2^"; splice_chain "3115656^,3115711^";
chr16	juncbase	alternative_donor	3115688	3115785	.	+	.	gene_id "alternative_donor.409"; transcript_id "alternative_donor.409"; gene_name "CUFF.1783"; flanks "3115688-,3115785^"; structure "1^,2^"; splice_chain "3115656^,3115688^";
chr16	juncbase	alternative_donor	3115495	3115785	.	+	.	gene_id "alternative_donor.410"; transcript_id "alternative_donor.410"; gene_name "CUFF.1783"; flanks "3115495-,3115785^"; structure "1^,2^"; splice_chain "3115495^,3115656^";
chr16	juncbase	intron_retention	106420	106539	.	+	.	gene_id "intron_retention.473"; transcript_id "intron_retention.473"; gene_name "CUFF.1767"; flanks "106420-,106539^"; structure "0,1^2-"; splice_chain ",106420^106539-";
chr16	juncbase	jcn_only_AA	4412132	4445290	.	-	.	gene_id "jcn_only_AA.510"; transcript_id "jcn_only_AA.510"; gene_name "CUFF.1800"; flanks "4412132-,4445290^"; structure "1-,2-"; splice_chain "4438632-,4412132-";
chr16	juncbase	cassette	66613795	66620900	.	+	.	gene_id "cassette.293"; transcript_id "cassette.293"; gene_name "CUFF.1853"; flanks "66613795-,66620900^"; structure "0,1-2^"; splice_chain ",66613929-66614087^";
chr16	juncbase	alternative_donor	75589702	75579852	.	-	.	gene_id "alternative_donor.411"; transcript_id "alternative_donor.411"; gene_name "CUFF.1863"; flanks "75589702-,75579852^"; structure "1^,2^"; splice_chain "75589702^,75589117^";
chr16	juncbase	jcn_only_AD	67222807	67221740	.	-	.	gene_id "jcn_only_AD.505"; transcript_id "jcn_only_AD.505"; gene_name ""; flanks "67222807-,67221740^"; structure "1^,2^"; splice_chain "67222807^,67222624^";
chr16	juncbase	intron_retention	23505624	23504908	.	-	.	gene_id "intron_retention.474"; transcript_id "intron_retention.474"; gene_name "CUFF.1829"; flanks "23505624-,23504908^"; structure "0,1^2-"; splice_chain ",23505624^23504908-";
chr16	juncbase	cassette	30006424	30005129	.	-	.	gene_id "cassette.294"; transcript_id "cassette.294"; gene_name "CUFF.1836"; flanks "30006424-,30005129^"; structure "0,1-2^"; splice_chain ",30006164-30005227^";
chr16	juncbase	jcn_only_AA	14020613	14021979	.	+	.	gene_id "jcn_only_AA.511"; transcript_id "jcn_only_AA.511"; gene_name ""; flanks "14020613-,14021979^"; structure "1-,2-"; splice_chain "14021885-,14021979-";
chr16	juncbase	alternative_donor	87812593	87811606	.	-	.	gene_id "alternative_donor.412"; transcript_id "alternative_donor.412"; gene_name "CUFF.1873"; flanks "87812593-,87811606^"; structure "1^,2^"; splice_chain "87812593^,87812414^";
chr16	juncbase	jcn_only_AA	89789591	89789687	.	+	.	gene_id "jcn_only_AA.512"; transcript_id "jcn_only_AA.512"; gene_name "CUFF.1767,CUFF.1874"; flanks "89789591-,89789687^"; structure "1-,2-"; splice_chain "89789668-,89789687-";
chr16	juncbase	intron_retention	3115495	3115785	.	+	.	gene_id "intron_retention.475"; transcript_id "intron_retention.475"; gene_name ""; flanks "3115495-,3115785^"; structure "0,1^2-"; splice_chain ",3115495^3115785-";
chr16	juncbase	intron_retention	4411986	4411470	.	-	.	gene_id "intron_retention.476"; transcript_id "intron_retention.476"; gene_name "CUFF.1800"; flanks "4411986-,4411470^"; structure "0,1^2-"; splice_chain ",4411986^4411470-";
chr16	juncbase	intron_retention	23507010	23505699	.	-	.	gene_id "intron_retention.477"; transcript_id "intron_retention.477"; gene_name ""; flanks "23507010-,23505699^"; structure "0,1^2-"; splice_chain ",23507010^23505699-";
chr16	juncbase	intron_retention	4466786	4445340	.	-	.	gene_id "intron_retention.478"; transcript_id "intron_retention.478"; gene_name ""; flanks "4466786-,4445340^"; structure "0,1^2-"; splice_chain ",4466786^4445340-";
chr16	juncbase	intron_retention	4414598	4414414	.	-	.	gene_id "intron_retention.479"; transcript_id "intron_retention.479"; gene_name "CUFF.1800"; flanks "4414598-,4414414^"; structure "0,1^2-"; splice_chain ",4414598^4414414-";
chr16	juncbase	jcn_only_AD	3115688	3115785	.	+	.	gene_id "jcn_only_AD.506"; transcript_id "jcn_only_AD.506"; gene_name "CUFF.1783"; flanks "3115688-,3115785^"; structure "1^,2^"; splice_chain "3115688^,3115711^";
chr16	juncbase	jcn_only_AD	3115495	3115785	.	+	.	gene_id "jcn_only_AD.507"; transcript_id "jcn_only_AD.507"; gene_name "CUFF.1783"; flanks "3115495-,3115785^"; structure "1^,2^"; splice_chain "3115495^,3115711^";
chr16	juncbase	jcn_only_AD	3115656	3115785	.	+	.	gene_id "jcn_only_AD.508"; transcript_id "jcn_only_AD.508"; gene_name "CUFF.1783"; flanks "3115656-,3115785^"; structure "1^,2^"; splice_chain "3115656^,3115711^";
chr16	juncbase	alternative_donor	70274910	70268195	.	-	.	gene_id "alternative_donor.413"; transcript_id "alternative_donor.413"; gene_name "CUFF.1800"; flanks "70274910-,70268195^"; structure "1^,2^"; splice_chain "70274910^,70268900^";
chr16	juncbase	intron_retention	14020613	14021979	.	+	.	gene_id "intron_retention.480"; transcript_id "intron_retention.480"; gene_name ""; flanks "14020613-,14021979^"; structure "0,1^2-"; splice_chain ",14020613^14021979-";
chr16	juncbase	jcn_only_AD	2201610	2201696	.	+	.	gene_id "jcn_only_AD.509"; transcript_id "jcn_only_AD.509"; gene_name "CUFF.1777"; flanks "2201610-,2201696^"; structure "1^,2^"; splice_chain "2201610^,2201611^";
chr16	juncbase	intron_retention	67970118	67970006	.	-	.	gene_id "intron_retention.481"; transcript_id "intron_retention.481"; gene_name "CUFF.1858"; flanks "67970118-,67970006^"; structure "0,1^2-"; splice_chain ",67970118^67970006-";
chr16	juncbase	intron_retention	21973837	21974082	.	+	.	gene_id "intron_retention.482"; transcript_id "intron_retention.482"; gene_name "CUFF.1821"; flanks "21973837-,21974082^"; structure "0,1^2-"; splice_chain ",21973837^21974082-";
chr16	juncbase	jcn_only_AD	3115495	3115782	.	+	.	gene_id "jcn_only_AD.510"; transcript_id "jcn_only_AD.510"; gene_name ""; flanks "3115495-,3115782^"; structure "1^,2^"; splice_chain "3115495^,3115711^";
chr16	juncbase	jcn_only_AD	3115688	3115782	.	+	.	gene_id "jcn_only_AD.511"; transcript_id "jcn_only_AD.511"; gene_name ""; flanks "3115688-,3115782^"; structure "1^,2^"; splice_chain "3115688^,3115711^";
chr16	juncbase	cassette	70380951	70389388	.	+	.	gene_id "cassette.295"; transcript_id "cassette.295"; gene_name "CUFF.1861"; flanks "70380951-,70389388^"; structure "0,1-2^"; splice_chain ",70384460-70384508^";
chr16	juncbase	alternative_acceptor	105549	105794	.	+	.	gene_id "alternative_acceptor.379"; transcript_id "alternative_acceptor.379"; gene_name ""; flanks "105549-,105794^"; structure "1-,2-"; splice_chain "105777-,105794-";
chr16	juncbase	intron_retention	3117416	3117555	.	+	.	gene_id "intron_retention.483"; transcript_id "intron_retention.483"; gene_name ""; flanks "3117416-,3117555^"; structure "0,1^2-"; splice_chain ",3117416^3117555-";
chr16	juncbase	jcn_only_AD	23507010	23505699	.	-	.	gene_id "jcn_only_AD.512"; transcript_id "jcn_only_AD.512"; gene_name "CUFF.1829"; flanks "23507010-,23505699^"; structure "1^,2^"; splice_chain "23507015^,23507010^";
chr16	juncbase	jcn_only_AD	23507035	23505699	.	-	.	gene_id "jcn_only_AD.513"; transcript_id "jcn_only_AD.513"; gene_name "CUFF.1829"; flanks "23507035-,23505699^"; structure "1^,2^"; splice_chain "23507035^,23507015^";
chr16	juncbase	jcn_only_AD	87812593	87811606	.	-	.	gene_id "jcn_only_AD.514"; transcript_id "jcn_only_AD.514"; gene_name "CUFF.1873"; flanks "87812593-,87811606^"; structure "1^,2^"; splice_chain "87812593^,87812414^";
chr16	juncbase	alternative_donor	57513773	57513597	.	-	.	gene_id "alternative_donor.414"; transcript_id "alternative_donor.414"; gene_name ""; flanks "57513773-,57513597^"; structure "1^,2^"; splice_chain "57513773^,57513757^";
chr16	juncbase	alternative_donor	57517870	57513597	.	-	.	gene_id "alternative_donor.415"; transcript_id "alternative_donor.415"; gene_name ""; flanks "57517870-,57513597^"; structure "1^,2^"; splice_chain "57517870^,57513757^";
chr16	juncbase	jcn_only_AD	21737979	21739562	.	+	.	gene_id "jcn_only_AD.515"; transcript_id "jcn_only_AD.515"; gene_name "CUFF.1819"; flanks "21737979-,21739562^"; structure "1^,2^"; splice_chain "21737979^,21738480^";
chr16	juncbase	jcn_only_AA	67968574	67968700	.	-	.	gene_id "jcn_only_AA.513"; transcript_id "jcn_only_AA.513"; gene_name "CUFF.1858"; flanks "67968574-,67968700^"; structure "1-,2-"; splice_chain "67968597-,67968574-";
chr16	juncbase	intron_retention	57513773	57513597	.	-	.	gene_id "intron_retention.484"; transcript_id "intron_retention.484"; gene_name ""; flanks "57513773-,57513597^"; structure "0,1^2-"; splice_chain ",57513773^57513597-";
chr16	juncbase	jcn_only_AD	3115711	3115785	.	+	.	gene_id "jcn_only_AD.516"; transcript_id "jcn_only_AD.516"; gene_name "CUFF.1783"; flanks "3115711-,3115785^"; structure "1^,2^"; splice_chain "3115688^,3115711^";
chr16	juncbase	jcn_only_AD	3115495	3115785	.	+	.	gene_id "jcn_only_AD.517"; transcript_id "jcn_only_AD.517"; gene_name "CUFF.1783"; flanks "3115495-,3115785^"; structure "1^,2^"; splice_chain "3115495^,3115688^";
chr16	juncbase	jcn_only_AD	3115656	3115785	.	+	.	gene_id "jcn_only_AD.518"; transcript_id "jcn_only_AD.518"; gene_name "CUFF.1783"; flanks "3115656-,3115785^"; structure "1^,2^"; splice_chain "3115656^,3115688^";
chr16	juncbase	intron_retention	4559539	4559630	.	+	.	gene_id "intron_retention.485"; transcript_id "intron_retention.485"; gene_name "CUFF.1801"; flanks "4559539-,4559630^"; structure "0,1^2-"; splice_chain ",4559539^4559630-";
chr16	juncbase	intron_retention	4466786	4463405	.	-	.	gene_id "intron_retention.486"; transcript_id "intron_retention.486"; gene_name ""; flanks "4466786-,4463405^"; structure "0,1^2-"; splice_chain ",4466786^4463405-";
chr16	juncbase	alternative_acceptor	4411470	4411986	.	-	.	gene_id "alternative_acceptor.380"; transcript_id "alternative_acceptor.380"; gene_name "CUFF.1800"; flanks "4411470-,4411986^"; structure "1-,2-"; splice_chain "4411804-,4411470-";
chr16	juncbase	alternative_acceptor	67968574	67968700	.	-	.	gene_id "alternative_acceptor.381"; transcript_id "alternative_acceptor.381"; gene_name "CUFF.1858"; flanks "67968574-,67968700^"; structure "1-,2-"; splice_chain "67968597-,67968574-";
chr16	juncbase	intron_retention	57514242	57513600	.	-	.	gene_id "intron_retention.487"; transcript_id "intron_retention.487"; gene_name ""; flanks "57514242-,57513600^"; structure "0,1^2-"; splice_chain ",57514242^57513600-";
chr16	juncbase	jcn_only_AA	3115827	3117444	.	+	.	gene_id "jcn_only_AA.514"; transcript_id "jcn_only_AA.514"; gene_name ""; flanks "3115827-,3117444^"; structure "1-,2-"; splice_chain "3117378-,3117444-";
chr16	juncbase	jcn_only_AD	57513757	57513597	.	-	.	gene_id "jcn_only_AD.519"; transcript_id "jcn_only_AD.519"; gene_name ""; flanks "57513757-,57513597^"; structure "1^,2^"; splice_chain "57513773^,57513757^";
chr16	juncbase	jcn_only_AD	57517870	57513597	.	-	.	gene_id "jcn_only_AD.520"; transcript_id "jcn_only_AD.520"; gene_name ""; flanks "57517870-,57513597^"; structure "1^,2^"; splice_chain "57517870^,57513773^";
chr16	juncbase	intron_retention	23478753	23478099	.	-	.	gene_id "intron_retention.488"; transcript_id "intron_retention.488"; gene_name ""; flanks "23478753-,23478099^"; structure "0,1^2-"; splice_chain ",23478753^23478099-";
chr16	juncbase	jcn_only_AA	23504779	23505624	.	-	.	gene_id "jcn_only_AA.515"; transcript_id "jcn_only_AA.515"; gene_name "CUFF.1829"; flanks "23504779-,23505624^"; structure "1-,2-"; splice_chain "23504842-,23504779-";
chr16	juncbase	jcn_only_AA	23504908	23505624	.	-	.	gene_id "jcn_only_AA.516"; transcript_id "jcn_only_AA.516"; gene_name "CUFF.1829"; flanks "23504908-,23505624^"; structure "1-,2-"; splice_chain "23504908-,23504842-";
chr16	juncbase	alternative_donor	23507010	23505699	.	-	.	gene_id "alternative_donor.416"; transcript_id "alternative_donor.416"; gene_name "CUFF.1829"; flanks "23507010-,23505699^"; structure "1^,2^"; splice_chain "23507035^,23507010^";
chr16	juncbase	alternative_donor	23507015	23505699	.	-	.	gene_id "alternative_donor.417"; transcript_id "alternative_donor.417"; gene_name "CUFF.1829"; flanks "23507015-,23505699^"; structure "1^,2^"; splice_chain "23507035^,23507015^";
chr16	juncbase	intron_retention	2203223	2203320	.	+	.	gene_id "intron_retention.489"; transcript_id "intron_retention.489"; gene_name "CUFF.1777"; flanks "2203223-,2203320^"; structure "0,1^2-"; splice_chain ",2203223^2203320-";
chr16	juncbase	intron_retention	3115711	3115785	.	+	.	gene_id "intron_retention.490"; transcript_id "intron_retention.490"; gene_name ""; flanks "3115711-,3115785^"; structure "0,1^2-"; splice_chain ",3115711^3115785-";
chr16	juncbase	intron_retention	57513757	57513600	.	-	.	gene_id "intron_retention.491"; transcript_id "intron_retention.491"; gene_name ""; flanks "57513757-,57513600^"; structure "0,1^2-"; splice_chain ",57513757^57513600-";
chr16	juncbase	intron_retention	31393217	31393789	.	+	.	gene_id "intron_retention.492"; transcript_id "intron_retention.492"; gene_name ""; flanks "31393217-,31393789^"; structure "0,1^2-"; splice_chain ",31393217^31393789-";
chr16	juncbase	cassette	21964777	21968738	.	+	.	gene_id "cassette.296"; transcript_id "cassette.296"; gene_name "CUFF.1821"; flanks "21964777-,21968738^"; structure "0,1-2^"; splice_chain ",21968556-21968639^";
chr16	juncbase	alternative_donor	57513773	57513597	.	-	.	gene_id "alternative_donor.418"; transcript_id "alternative_donor.418"; gene_name ""; flanks "57513773-,57513597^"; structure "1^,2^"; splice_chain "57517870^,57513773^";
chr16	juncbase	alternative_donor	57513757	57513597	.	-	.	gene_id "alternative_donor.419"; transcript_id "alternative_donor.419"; gene_name ""; flanks "57513757-,57513597^"; structure "1^,2^"; splice_chain "57517870^,57513757^";
chr16	juncbase	jcn_only_AD	57513354	57509869	.	-	.	gene_id "jcn_only_AD.521"; transcript_id "jcn_only_AD.521"; gene_name "CUFF.1849"; flanks "57513354-,57509869^"; structure "1^,2^"; splice_chain "57513354^,57512456^";
chr16	juncbase	alternative_acceptor	23504842	23505624	.	-	.	gene_id "alternative_acceptor.382"; transcript_id "alternative_acceptor.382"; gene_name "CUFF.1829"; flanks "23504842-,23505624^"; structure "1-,2-"; splice_chain "23504842-,23504779-";
chr16	juncbase	alternative_acceptor	23504908	23505624	.	-	.	gene_id "alternative_acceptor.383"; transcript_id "alternative_acceptor.383"; gene_name "CUFF.1829"; flanks "23504908-,23505624^"; structure "1-,2-"; splice_chain "23504908-,23504779-";
chr16	juncbase	jcn_only_AA	23504842	23505624	.	-	.	gene_id "jcn_only_AA.517"; transcript_id "jcn_only_AA.517"; gene_name "CUFF.1829"; flanks "23504842-,23505624^"; structure "1-,2-"; splice_chain "23504908-,23504842-";
chr16	juncbase	jcn_only_AA	23504779	23505624	.	-	.	gene_id "jcn_only_AA.518"; transcript_id "jcn_only_AA.518"; gene_name "CUFF.1829"; flanks "23504779-,23505624^"; structure "1-,2-"; splice_chain "23504908-,23504779-";
chr16	juncbase	jcn_only_AD	70255157	70254783	.	-	.	gene_id "jcn_only_AD.522"; transcript_id "jcn_only_AD.522"; gene_name "CUFF.1829,CUFF.1860"; flanks "70255157-,70254783^"; structure "1^,2^"; splice_chain "70255157^,70255153^";
chr16	juncbase	intron_retention	15155646	15154030	.	-	.	gene_id "intron_retention.493"; transcript_id "intron_retention.493"; gene_name "CUFF.1813"; flanks "15155646-,15154030^"; structure "0,1^2-"; splice_chain ",15155646^15154030-";
chr16	juncbase	intron_retention	89789591	89789687	.	+	.	gene_id "intron_retention.494"; transcript_id "intron_retention.494"; gene_name "CUFF.1874"; flanks "89789591-,89789687^"; structure "0,1^2-"; splice_chain ",89789591^89789687-";
chr16	juncbase	intron_retention	3118011	3118181	.	+	.	gene_id "intron_retention.495"; transcript_id "intron_retention.495"; gene_name ""; flanks "3118011-,3118181^"; structure "0,1^2-"; splice_chain ",3118011^3118181-";
chr16	juncbase	jcn_only_AA	57513597	57517870	.	-	.	gene_id "jcn_only_AA.519"; transcript_id "jcn_only_AA.519"; gene_name ""; flanks "57513597-,57517870^"; structure "1-,2-"; splice_chain "57513600-,57513597-";
chr16	juncbase	alternative_donor	70256274	70255304	.	-	.	gene_id "alternative_donor.420"; transcript_id "alternative_donor.420"; gene_name "CUFF.1860"; flanks "70256274-,70255304^"; structure "1^,2^"; splice_chain "70256274^,70256270^";
chr16	juncbase	alternative_donor	105542	105794	.	+	.	gene_id "alternative_donor.421"; transcript_id "alternative_donor.421"; gene_name ""; flanks "105542-,105794^"; structure "1^,2^"; splice_chain "105542^,105549^";
chr16	juncbase	jcn_only_AD	89793733	89795643	.	+	.	gene_id "jcn_only_AD.523"; transcript_id "jcn_only_AD.523"; gene_name "CUFF.1874"; flanks "89793733-,89795643^"; structure "1^,2^"; splice_chain "89793733^,89793765^";
chr16	juncbase	cassette	3115495	3117378	.	+	.	gene_id "cassette.297"; transcript_id "cassette.297"; gene_name "CUFF.1783"; flanks "3115495-,3117378^"; structure "0,1-2^"; splice_chain ",3115785-3115827^";
chr16	juncbase	alternative_donor	22448813	22462941	.	+	.	gene_id "alternative_donor.422"; transcript_id "alternative_donor.422"; gene_name "CUFF.1825"; flanks "22448813-,22462941^"; structure "1^,2^"; splice_chain "22448813^,22449058^";
chr16	juncbase	intron_retention	19584563	19586420	.	+	.	gene_id "intron_retention.496"; transcript_id "intron_retention.496"; gene_name ""; flanks "19584563-,19586420^"; structure "0,1^2-"; splice_chain ",19584563^19586420-";
chr16	juncbase	cassette	19621737	19627436	.	+	.	gene_id "cassette.298"; transcript_id "cassette.298"; gene_name "CUFF.1815"; flanks "19621737-,19627436^"; structure "0,1-2^"; splice_chain ",19623050-19623120^";
chr16	juncbase	jcn_only_AD	22448813	22462941	.	+	.	gene_id "jcn_only_AD.524"; transcript_id "jcn_only_AD.524"; gene_name "CUFF.1825"; flanks "22448813-,22462941^"; structure "1^,2^"; splice_chain "22448813^,22449058^";
chr16	juncbase	intron_retention	3117416	3118181	.	+	.	gene_id "intron_retention.497"; transcript_id "intron_retention.497"; gene_name ""; flanks "3117416-,3118181^"; structure "0,1^2-"; splice_chain ",3117416^3118181-";
chr16	juncbase	alternative_donor	57513757	57513597	.	-	.	gene_id "alternative_donor.423"; transcript_id "alternative_donor.423"; gene_name ""; flanks "57513757-,57513597^"; structure "1^,2^"; splice_chain "57513773^,57513757^";
chr16	juncbase	alternative_donor	57517870	57513597	.	-	.	gene_id "alternative_donor.424"; transcript_id "alternative_donor.424"; gene_name ""; flanks "57517870-,57513597^"; structure "1^,2^"; splice_chain "57517870^,57513773^";
chr16	juncbase	alternative_donor	2141609	2142890	.	+	.	gene_id "alternative_donor.425"; transcript_id "alternative_donor.425"; gene_name "CUFF.1774"; flanks "2141609-,2142890^"; structure "1^,2^"; splice_chain "2141609^,2141615^";
chr16	juncbase	alternative_acceptor	3115827	3117444	.	+	.	gene_id "alternative_acceptor.384"; transcript_id "alternative_acceptor.384"; gene_name ""; flanks "3115827-,3117444^"; structure "1-,2-"; splice_chain "3117378-,3117444-";
chr16	juncbase	alternative_donor	3115495	3115782	.	+	.	gene_id "alternative_donor.426"; transcript_id "alternative_donor.426"; gene_name ""; flanks "3115495-,3115782^"; structure "1^,2^"; splice_chain "3115495^,3115688^";
chr16	juncbase	alternative_donor	3115711	3115782	.	+	.	gene_id "alternative_donor.427"; transcript_id "alternative_donor.427"; gene_name ""; flanks "3115711-,3115782^"; structure "1^,2^"; splice_chain "3115688^,3115711^";
chr16	juncbase	jcn_only_AD	6093176	6400446	.	+	.	gene_id "jcn_only_AD.525"; transcript_id "jcn_only_AD.525"; gene_name ""; flanks "6093176-,6400446^"; structure "1^,2^"; splice_chain "6093176^,6328434^";
chr16	juncbase	jcn_only_AD	6028178	6400446	.	+	.	gene_id "jcn_only_AD.526"; transcript_id "jcn_only_AD.526"; gene_name ""; flanks "6028178-,6400446^"; structure "1^,2^"; splice_chain "6028178^,6328434^";
chr16	juncbase	jcn_only_AD	6028173	6400446	.	+	.	gene_id "jcn_only_AD.527"; transcript_id "jcn_only_AD.527"; gene_name ""; flanks "6028173-,6400446^"; structure "1^,2^"; splice_chain "6028173^,6328434^";
chr16	juncbase	jcn_only_AD	6093173	6400446	.	+	.	gene_id "jcn_only_AD.528"; transcript_id "jcn_only_AD.528"; gene_name ""; flanks "6093173-,6400446^"; structure "1^,2^"; splice_chain "6093173^,6328434^";
chr16	juncbase	cassette	31383991	31388120	.	+	.	gene_id "cassette.299"; transcript_id "cassette.299"; gene_name "CUFF.1838"; flanks "31383991-,31388120^"; structure "0,1-2^"; splice_chain ",31384570-31384711^";
chr16	juncbase	intron_retention	2203046	2203147	.	+	.	gene_id "intron_retention.498"; transcript_id "intron_retention.498"; gene_name "CUFF.1777"; flanks "2203046-,2203147^"; structure "0,1^2-"; splice_chain ",2203046^2203147-";
chr16	juncbase	jcn_only_AA	67234871	67235312	.	+	.	gene_id "jcn_only_AA.520"; transcript_id "jcn_only_AA.520"; gene_name "CUFF.1855"; flanks "67234871-,67235312^"; structure "1-,2-"; splice_chain "67235288-,67235312-";
chr16	juncbase	intron_retention	70404288	70405275	.	+	.	gene_id "intron_retention.499"; transcript_id "intron_retention.499"; gene_name "CUFF.1861"; flanks "70404288-,70405275^"; structure "0,1^2-"; splice_chain ",70404288^70405275-";
chr16	juncbase	alternative_acceptor	67223083	67223534	.	-	.	gene_id "alternative_acceptor.385"; transcript_id "alternative_acceptor.385"; gene_name "CUFF.1856"; flanks "67223083-,67223534^"; structure "1-,2-"; splice_chain "67223098-,67223083-";
chr16	juncbase	intron_retention	3196086	3197259	.	+	.	gene_id "intron_retention.500"; transcript_id "intron_retention.500"; gene_name "CUFF.1784"; flanks "3196086-,3197259^"; structure "0,1^2-"; splice_chain ",3196086^3197259-";
chr16	juncbase	alternative_donor	23507035	23505699	.	-	.	gene_id "alternative_donor.428"; transcript_id "alternative_donor.428"; gene_name "CUFF.1829"; flanks "23507035-,23505699^"; structure "1^,2^"; splice_chain "23507035^,23507010^";
chr16	juncbase	alternative_donor	23507015	23505699	.	-	.	gene_id "alternative_donor.429"; transcript_id "alternative_donor.429"; gene_name "CUFF.1829"; flanks "23507015-,23505699^"; structure "1^,2^"; splice_chain "23507015^,23507010^";
chr16	juncbase	alternative_donor	75576500	75575353	.	-	.	gene_id "alternative_donor.430"; transcript_id "alternative_donor.430"; gene_name "CUFF.1863"; flanks "75576500-,75575353^"; structure "1^,2^"; splice_chain "75576500^,75576453^";
chr16	juncbase	alternative_acceptor	57513597	57513757	.	-	.	gene_id "alternative_acceptor.386"; transcript_id "alternative_acceptor.386"; gene_name ""; flanks "57513597-,57513757^"; structure "1-,2-"; splice_chain "57513600-,57513597-";
chr16	juncbase	alternative_donor	21716358	21716490	.	+	.	gene_id "alternative_donor.431"; transcript_id "alternative_donor.431"; gene_name "CUFF.1819"; flanks "21716358-,21716490^"; structure "1^,2^"; splice_chain "21712390^,21716358^";
chr16	juncbase	alternative_donor	21712348	21716490	.	+	.	gene_id "alternative_donor.432"; transcript_id "alternative_donor.432"; gene_name "CUFF.1819"; flanks "21712348-,21716490^"; structure "1^,2^"; splice_chain "21712348^,21712390^";
chr16	juncbase	intron_retention	14026261	14028049	.	+	.	gene_id "intron_retention.501"; transcript_id "intron_retention.501"; gene_name ""; flanks "14026261-,14028049^"; structure "0,1^2-"; splice_chain ",14026261^14028049-";
chr16	juncbase	alternative_donor	21712348	21716490	.	+	.	gene_id "alternative_donor.433"; transcript_id "alternative_donor.433"; gene_name "CUFF.1819"; flanks "21712348-,21716490^"; structure "1^,2^"; splice_chain "21712348^,21716358^";
chr16	juncbase	alternative_donor	21712390	21716490	.	+	.	gene_id "alternative_donor.434"; transcript_id "alternative_donor.434"; gene_name "CUFF.1819"; flanks "21712390-,21716490^"; structure "1^,2^"; splice_chain "21712390^,21716358^";
chr16	juncbase	alternative_donor	67222807	67221740	.	-	.	gene_id "alternative_donor.435"; transcript_id "alternative_donor.435"; gene_name ""; flanks "67222807-,67221740^"; structure "1^,2^"; splice_chain "67222807^,67222624^";
chr16	juncbase	jcn_only_AD	70256274	70255304	.	-	.	gene_id "jcn_only_AD.529"; transcript_id "jcn_only_AD.529"; gene_name "CUFF.1860"; flanks "70256274-,70255304^"; structure "1^,2^"; splice_chain "70256274^,70256270^";
chr16	juncbase	intron_retention	67969485	67969381	.	-	.	gene_id "intron_retention.502"; transcript_id "intron_retention.502"; gene_name "CUFF.1858"; flanks "67969485-,67969381^"; structure "0,1^2-"; splice_chain ",67969485^67969381-";
chr16	juncbase	cassette	77756514	77775479	.	+	.	gene_id "cassette.300"; transcript_id "cassette.300"; gene_name "CUFF.1866"; flanks "77756514-,77775479^"; structure "0,1-2^"; splice_chain ",77759328-77759481^";
chr16	juncbase	jcn_only_AD	2141609	2142890	.	+	.	gene_id "jcn_only_AD.530"; transcript_id "jcn_only_AD.530"; gene_name "CUFF.1774"; flanks "2141609-,2142890^"; structure "1^,2^"; splice_chain "2141609^,2141615^";
chr16	juncbase	intron_retention	4405287	4405164	.	-	.	gene_id "intron_retention.503"; transcript_id "intron_retention.503"; gene_name "CUFF.1800"; flanks "4405287-,4405164^"; structure "0,1^2-"; splice_chain ",4405287^4405164-";
chr16	juncbase	alternative_acceptor	14020613	14021979	.	+	.	gene_id "alternative_acceptor.387"; transcript_id "alternative_acceptor.387"; gene_name ""; flanks "14020613-,14021979^"; structure "1-,2-"; splice_chain "14021885-,14021979-";
chr16	juncbase	cassette	19584563	19590374	.	+	.	gene_id "cassette.301"; transcript_id "cassette.301"; gene_name "CUFF.1815"; flanks "19584563-,19590374^"; structure "0,1-2^"; splice_chain ",19586420-19586444^";
chr16	juncbase	intron_retention	3117416	3117985	.	+	.	gene_id "intron_retention.504"; transcript_id "intron_retention.504"; gene_name ""; flanks "3117416-,3117985^"; structure "0,1^2-"; splice_chain ",3117416^3117985-";
chr16	juncbase	jcn_only_AD	3115711	3115785	.	+	.	gene_id "jcn_only_AD.531"; transcript_id "jcn_only_AD.531"; gene_name "CUFF.1783"; flanks "3115711-,3115785^"; structure "1^,2^"; splice_chain "3115656^,3115711^";
chr16	juncbase	jcn_only_AD	3115688	3115785	.	+	.	gene_id "jcn_only_AD.532"; transcript_id "jcn_only_AD.532"; gene_name "CUFF.1783"; flanks "3115688-,3115785^"; structure "1^,2^"; splice_chain "3115656^,3115688^";
chr16	juncbase	jcn_only_AD	3115495	3115785	.	+	.	gene_id "jcn_only_AD.533"; transcript_id "jcn_only_AD.533"; gene_name "CUFF.1783"; flanks "3115495-,3115785^"; structure "1^,2^"; splice_chain "3115495^,3115656^";
chr16	juncbase	intron_retention	75576500	75575353	.	-	.	gene_id "intron_retention.505"; transcript_id "intron_retention.505"; gene_name "CUFF.1863"; flanks "75576500-,75575353^"; structure "0,1^2-"; splice_chain ",75576500^75575353-";
chr16	juncbase	intron_retention	19592975	19603112	.	+	.	gene_id "intron_retention.506"; transcript_id "intron_retention.506"; gene_name ""; flanks "19592975-,19603112^"; structure "0,1^2-"; splice_chain ",19592975^19603112-";
chr16	juncbase	intron_retention	66613601	66614042	.	+	.	gene_id "intron_retention.507"; transcript_id "intron_retention.507"; gene_name "CUFF.1853"; flanks "66613601-,66614042^"; structure "0,1^2-"; splice_chain ",66613601^66614042-";
chr16	juncbase	intron_retention	31368422	31368655	.	+	.	gene_id "intron_retention.508"; transcript_id "intron_retention.508"; gene_name "CUFF.1838"; flanks "31368422-,31368655^"; structure "0,1^2-"; splice_chain ",31368422^31368655-";
chr16	juncbase	intron_retention	3115495	3115622	.	+	.	gene_id "intron_retention.509"; transcript_id "intron_retention.509"; gene_name ""; flanks "3115495-,3115622^"; structure "0,1^2-"; splice_chain ",3115495^3115622-";
chr16	juncbase	intron_retention	19584563	19590374	.	+	.	gene_id "intron_retention.510"; transcript_id "intron_retention.510"; gene_name ""; flanks "19584563-,19590374^"; structure "0,1^2-"; splice_chain ",19584563^19590374-";
chr16	juncbase	alternative_acceptor	2203223	2203579	.	+	.	gene_id "alternative_acceptor.388"; transcript_id "alternative_acceptor.388"; gene_name "CUFF.1777"; flanks "2203223-,2203579^"; structure "1-,2-"; splice_chain "2203320-,2203579-";
chr16	juncbase	jcn_only_AD	586142	587134	.	+	.	gene_id "jcn_only_AD.534"; transcript_id "jcn_only_AD.534"; gene_name ""; flanks "586142-,587134^"; structure "1^,2^"; splice_chain "586142^,586895^";
chr16	juncbase	alternative_acceptor	63565208	63651597	.	-	.	gene_id "alternative_acceptor.389"; transcript_id "alternative_acceptor.389"; gene_name "CUFF.1852"; flanks "63565208-,63651597^"; structure "1-,2-"; splice_chain "63566835-,63565208-";
chr16	juncbase	alternative_donor	57513354	57509869	.	-	.	gene_id "alternative_donor.436"; transcript_id "alternative_donor.436"; gene_name "CUFF.1849"; flanks "57513354-,57509869^"; structure "1^,2^"; splice_chain "57513354^,57512456^";
chr16	juncbase	jcn_only_AD	21716358	21716490	.	+	.	gene_id "jcn_only_AD.535"; transcript_id "jcn_only_AD.535"; gene_name "CUFF.1819"; flanks "21716358-,21716490^"; structure "1^,2^"; splice_chain "21712390^,21716358^";
chr16	juncbase	jcn_only_AD	21712348	21716490	.	+	.	gene_id "jcn_only_AD.536"; transcript_id "jcn_only_AD.536"; gene_name "CUFF.1819"; flanks "21712348-,21716490^"; structure "1^,2^"; splice_chain "21712348^,21712390^";
chr16	juncbase	jcn_only_AD	57513773	57513597	.	-	.	gene_id "jcn_only_AD.537"; transcript_id "jcn_only_AD.537"; gene_name ""; flanks "57513773-,57513597^"; structure "1^,2^"; splice_chain "57513773^,57513757^";
chr16	juncbase	jcn_only_AD	57517870	57513597	.	-	.	gene_id "jcn_only_AD.538"; transcript_id "jcn_only_AD.538"; gene_name ""; flanks "57517870-,57513597^"; structure "1^,2^"; splice_chain "57517870^,57513757^";
chr16	juncbase	intron_retention	3115495	3115782	.	+	.	gene_id "intron_retention.511"; transcript_id "intron_retention.511"; gene_name ""; flanks "3115495-,3115782^"; structure "0,1^2-"; splice_chain ",3115495^3115782-";
chr16	juncbase	alternative_acceptor	23504842	23505624	.	-	.	gene_id "alternative_acceptor.390"; transcript_id "alternative_acceptor.390"; gene_name "CUFF.1829"; flanks "23504842-,23505624^"; structure "1-,2-"; splice_chain "23504908-,23504842-";
chr16	juncbase	alternative_acceptor	23504779	23505624	.	-	.	gene_id "alternative_acceptor.391"; transcript_id "alternative_acceptor.391"; gene_name "CUFF.1829"; flanks "23504779-,23505624^"; structure "1-,2-"; splice_chain "23504908-,23504779-";
chr16	juncbase	jcn_only_AD	75576500	75575353	.	-	.	gene_id "jcn_only_AD.539"; transcript_id "jcn_only_AD.539"; gene_name "CUFF.1863"; flanks "75576500-,75575353^"; structure "1^,2^"; splice_chain "75576500^,75576453^";
chr16	juncbase	jcn_only_AA	4466962	4475479	.	-	.	gene_id "jcn_only_AA.521"; transcript_id "jcn_only_AA.521"; gene_name ""; flanks "4466962-,4475479^"; structure "1-,2-"; splice_chain "4470554-,4466962-";
chr16	juncbase	jcn_only_AA	4411470	4411986	.	-	.	gene_id "jcn_only_AA.522"; transcript_id "jcn_only_AA.522"; gene_name "CUFF.1800"; flanks "4411470-,4411986^"; structure "1-,2-"; splice_chain "4411804-,4411470-";
chr16	juncbase	cassette	14031715	14038580	.	+	.	gene_id "cassette.302"; transcript_id "cassette.302"; gene_name "CUFF.1810"; flanks "14031715-,14038580^"; structure "0,1-2^"; splice_chain ",14037831-14037952^";
chr16	juncbase	cassette	2653728	2663961	.	+	.	gene_id "cassette.303"; transcript_id "cassette.303"; gene_name "CUFF.1779"; flanks "2653728-,2663961^"; structure "0,1-2^"; splice_chain ",2660463-2661053^";
chr15	juncbase	cassette	50838670	50831048	.	-	.	gene_id "cassette.304"; transcript_id "cassette.304"; gene_name "CUFF.1687"; flanks "50838670-,50831048^"; structure "0,1-2^"; splice_chain ",50833461-50833246^";
chr15	juncbase	jcn_only_AD	97326819	97327383	.	+	.	gene_id "jcn_only_AD.540"; transcript_id "jcn_only_AD.540"; gene_name "CUFF.1761"; flanks "97326819-,97327383^"; structure "1^,2^"; splice_chain "97326819^,97327060^";
chr15	juncbase	jcn_only_AD	97326974	97327383	.	+	.	gene_id "jcn_only_AD.541"; transcript_id "jcn_only_AD.541"; gene_name "CUFF.1761"; flanks "97326974-,97327383^"; structure "1^,2^"; splice_chain "97326974^,97327060^";
chr15	juncbase	alternative_donor	63128272	63131055	.	+	.	gene_id "alternative_donor.437"; transcript_id "alternative_donor.437"; gene_name "CUFF.1717"; flanks "63128272-,63131055^"; structure "1^,2^"; splice_chain "63128272^,63128317^";
chr15	juncbase	intron_retention	77771663	77775312	.	+	.	gene_id "intron_retention.512"; transcript_id "intron_retention.512"; gene_name "CUFF.1735"; flanks "77771663-,77775312^"; structure "0,1^2-"; splice_chain ",77771663^77775312-";
chr15	juncbase	jcn_only_AD	57211104	57212090	.	+	.	gene_id "jcn_only_AD.542"; transcript_id "jcn_only_AD.542"; gene_name "CUFF.1704"; flanks "57211104-,57212090^"; structure "1^,2^"; splice_chain "57211104^,57211426^";
chr15	juncbase	intron_retention	41222314	41222823	.	+	.	gene_id "intron_retention.513"; transcript_id "intron_retention.513"; gene_name "CUFF.1672"; flanks "41222314-,41222823^"; structure "0,1^2-"; splice_chain ",41222314^41222823-";
chr15	juncbase	alternative_donor	83378346	83358205	.	-	.	gene_id "alternative_donor.438"; transcript_id "alternative_donor.438"; gene_name "CUFF.1743"; flanks "83378346-,83358205^"; structure "1^,2^"; splice_chain "83378346^,83366609^";
chr15	juncbase	alternative_donor	83358515	83358205	.	-	.	gene_id "alternative_donor.439"; transcript_id "alternative_donor.439"; gene_name "CUFF.1743"; flanks "83358515-,83358205^"; structure "1^,2^"; splice_chain "83366609^,83358515^";
chr15	juncbase	alternative_donor	83377524	83358205	.	-	.	gene_id "alternative_donor.440"; transcript_id "alternative_donor.440"; gene_name "CUFF.1743"; flanks "83377524-,83358205^"; structure "1^,2^"; splice_chain "83377524^,83366609^";
chr15	juncbase	alternative_donor	44898223	44892830	.	-	.	gene_id "alternative_donor.441"; transcript_id "alternative_donor.441"; gene_name "CUFF.1681"; flanks "44898223-,44892830^"; structure "1^,2^"; splice_chain "44898223^,44896303^";
chr15	juncbase	cassette	78526713	78487068	.	-	.	gene_id "cassette.305"; transcript_id "cassette.305"; gene_name "CUFF.1737"; flanks "78526713-,78487068^"; structure "0,1-2^"; splice_chain ",78518947-78518797^";
chr15	juncbase	alternative_acceptor	57211104	57212100	.	+	.	gene_id "alternative_acceptor.392"; transcript_id "alternative_acceptor.392"; gene_name "CUFF.1704"; flanks "57211104-,57212100^"; structure "1-,2-"; splice_chain "57212090-,57212100-";
chr15	juncbase	alternative_donor	57535748	57543548	.	+	.	gene_id "alternative_donor.442"; transcript_id "alternative_donor.442"; gene_name "CUFF.1704"; flanks "57535748-,57543548^"; structure "1^,2^"; splice_chain "57535748^,57540279^";
chr15	juncbase	intron_retention	40531336	40532800	.	+	.	gene_id "intron_retention.514"; transcript_id "intron_retention.514"; gene_name ""; flanks "40531336-,40532800^"; structure "0,1^2-"; splice_chain ",40531336^40532800-";
chr15	juncbase	intron_retention	64444525	64444837	.	+	.	gene_id "intron_retention.515"; transcript_id "intron_retention.515"; gene_name "CUFF.1720"; flanks "64444525-,64444837^"; structure "0,1^2-"; splice_chain ",64444525^64444837-";
chr15	juncbase	alternative_donor	83366609	83358205	.	-	.	gene_id "alternative_donor.443"; transcript_id "alternative_donor.443"; gene_name "CUFF.1743"; flanks "83366609-,83358205^"; structure "1^,2^"; splice_chain "83366609^,83358515^";
chr15	juncbase	alternative_donor	83378346	83358205	.	-	.	gene_id "alternative_donor.444"; transcript_id "alternative_donor.444"; gene_name "CUFF.1743"; flanks "83378346-,83358205^"; structure "1^,2^"; splice_chain "83378346^,83358515^";
chr15	juncbase	alternative_donor	83377524	83358205	.	-	.	gene_id "alternative_donor.445"; transcript_id "alternative_donor.445"; gene_name "CUFF.1743"; flanks "83377524-,83358205^"; structure "1^,2^"; splice_chain "83377524^,83358515^";
chr15	juncbase	cassette	29131424	29140666	.	+	.	gene_id "cassette.306"; transcript_id "cassette.306"; gene_name "CUFF.1659"; flanks "29131424-,29140666^"; structure "0,1-2^"; splice_chain ",29139020-29139190^";
chr15	juncbase	alternative_donor	74771619	74773392	.	+	.	gene_id "alternative_donor.446"; transcript_id "alternative_donor.446"; gene_name "CUFF.1729"; flanks "74771619-,74773392^"; structure "1^,2^"; splice_chain "74771619^,74773255^";
chr15	juncbase	cassette	44876012	44862856	.	-	.	gene_id "cassette.307"; transcript_id "cassette.307"; gene_name "CUFF.1681"; flanks "44876012-,44862856^"; structure "0,1-2^"; splice_chain ",44865018-44864881^";
chr15	juncbase	alternative_acceptor	75772255	75782549	.	-	.	gene_id "alternative_acceptor.393"; transcript_id "alternative_acceptor.393"; gene_name "CUFF.1732"; flanks "75772255-,75782549^"; structure "1-,2-"; splice_chain "75780118-,75772255-";
chr15	juncbase	jcn_only_AA	78807449	78819722	.	+	.	gene_id "jcn_only_AA.523"; transcript_id "jcn_only_AA.523"; gene_name "CUFF.1739"; flanks "78807449-,78819722^"; structure "1-,2-"; splice_chain "78810930-,78819722-";
chr15	juncbase	cassette	78526713	78487068	.	-	.	gene_id "cassette.308"; transcript_id "cassette.308"; gene_name "CUFF.1737"; flanks "78526713-,78487068^"; structure "0,1-2^"; splice_chain ",78500444-78500344^";
chr15	juncbase	alternative_donor	29282999	29287956	.	+	.	gene_id "alternative_donor.447"; transcript_id "alternative_donor.447"; gene_name "CUFF.1659"; flanks "29282999-,29287956^"; structure "1^,2^"; splice_chain "29213952^,29282999^";
chr15	juncbase	alternative_donor	29213921	29287956	.	+	.	gene_id "alternative_donor.448"; transcript_id "alternative_donor.448"; gene_name "CUFF.1659"; flanks "29213921-,29287956^"; structure "1^,2^"; splice_chain "29213921^,29213952^";
chr15	juncbase	alternative_donor	29253787	29287956	.	+	.	gene_id "alternative_donor.449"; transcript_id "alternative_donor.449"; gene_name "CUFF.1659"; flanks "29253787-,29287956^"; structure "1^,2^"; splice_chain "29213952^,29253787^";
chr15	juncbase	cassette	47687758	47652294	.	-	.	gene_id "cassette.309"; transcript_id "cassette.309"; gene_name "CUFF.1686"; flanks "47687758-,47652294^"; structure "0,1-2^"; splice_chain ",47672792-47672654^";
chr15	juncbase	cassette	91298168	91303824	.	+	.	gene_id "cassette.310"; transcript_id "cassette.310"; gene_name "CUFF.1758"; flanks "91298168-,91303824^"; structure "0,1-2^"; splice_chain ",91303377-91303509^";
chr15	juncbase	intron_retention	64445585	64445851	.	+	.	gene_id "intron_retention.516"; transcript_id "intron_retention.516"; gene_name ""; flanks "64445585-,64445851^"; structure "0,1^2-"; splice_chain ",64445585^64445851-";
chr15	juncbase	alternative_acceptor	45491298	45492925	.	-	.	gene_id "alternative_acceptor.394"; transcript_id "alternative_acceptor.394"; gene_name "CUFF.1683"; flanks "45491298-,45492925^"; structure "1-,2-"; splice_chain "45491298-,45470504-";
chr15	juncbase	alternative_acceptor	45491318	45492925	.	-	.	gene_id "alternative_acceptor.395"; transcript_id "alternative_acceptor.395"; gene_name "CUFF.1683"; flanks "45491318-,45492925^"; structure "1-,2-"; splice_chain "45491318-,45470504-";
chr15	juncbase	cassette	55488551	55485031	.	-	.	gene_id "cassette.311"; transcript_id "cassette.311"; gene_name "CUFF.1697"; flanks "55488551-,55485031^"; structure "0,1-2^"; splice_chain ",55486557-55486494^";
chr15	juncbase	jcn_only_AD	24780953	24811803	.	+	.	gene_id "jcn_only_AD.543"; transcript_id "jcn_only_AD.543"; gene_name "CUFF.1652"; flanks "24780953-,24811803^"; structure "1^,2^"; splice_chain "24780953^,24811359^";
chr15	juncbase	jcn_only_AD	24803468	24811803	.	+	.	gene_id "jcn_only_AD.544"; transcript_id "jcn_only_AD.544"; gene_name "CUFF.1652"; flanks "24803468-,24811803^"; structure "1^,2^"; splice_chain "24803468^,24811359^";
chr15	juncbase	jcn_only_AA	57574796	57578355	.	+	.	gene_id "jcn_only_AA.524"; transcript_id "jcn_only_AA.524"; gene_name "CUFF.1704"; flanks "57574796-,57578355^"; structure "1-,2-"; splice_chain "57578355-,57591424-";
chr15	juncbase	jcn_only_AA	57574796	57583027	.	+	.	gene_id "jcn_only_AA.525"; transcript_id "jcn_only_AA.525"; gene_name "CUFF.1704"; flanks "57574796-,57583027^"; structure "1-,2-"; splice_chain "57583027-,57591424-";
chr15	juncbase	jcn_only_AD	31294233	31327956	.	+	.	gene_id "jcn_only_AD.545"; transcript_id "jcn_only_AD.545"; gene_name "CUFF.1663"; flanks "31294233-,31327956^"; structure "1^,2^"; splice_chain "31294233^,31327859^";
chr15	juncbase	jcn_only_AA	45491298	45492925	.	-	.	gene_id "jcn_only_AA.526"; transcript_id "jcn_only_AA.526"; gene_name "CUFF.1683"; flanks "45491298-,45492925^"; structure "1-,2-"; splice_chain "45491298-,45470504-";
chr15	juncbase	jcn_only_AA	45491318	45492925	.	-	.	gene_id "jcn_only_AA.527"; transcript_id "jcn_only_AA.527"; gene_name "CUFF.1683"; flanks "45491318-,45492925^"; structure "1-,2-"; splice_chain "45491318-,45470504-";
chr15	juncbase	cassette	44864881	44859790	.	-	.	gene_id "cassette.312"; transcript_id "cassette.312"; gene_name "CUFF.1681"; flanks "44864881-,44859790^"; structure "0,1-2^"; splice_chain ",44862856-44862723^";
chr15	juncbase	cassette	102197125	102194933	.	-	.	gene_id "cassette.313"; transcript_id "cassette.313"; gene_name "CUFF.1764"; flanks "102197125-,102194933^"; structure "0,1-2^"; splice_chain ",102196223-102196070^";
chr15	juncbase	cassette	77578765	77544868	.	-	.	gene_id "cassette.314"; transcript_id "cassette.314"; gene_name "CUFF.1734"; flanks "77578765-,77544868^"; structure "0,1-2^"; splice_chain ",77577420-77577300^";
chr15	juncbase	jcn_only_AD	74771619	74773392	.	+	.	gene_id "jcn_only_AD.546"; transcript_id "jcn_only_AD.546"; gene_name "CUFF.1729"; flanks "74771619-,74773392^"; structure "1^,2^"; splice_chain "74771619^,74773255^";
chr15	juncbase	alternative_donor	24820150	24832714	.	+	.	gene_id "alternative_donor.450"; transcript_id "alternative_donor.450"; gene_name "CUFF.1652"; flanks "24820150-,24832714^"; structure "1^,2^"; splice_chain "24820150^,24825477^";
chr15	juncbase	alternative_donor	74754368	74758377	.	+	.	gene_id "alternative_donor.451"; transcript_id "alternative_donor.451"; gene_name "CUFF.1729"; flanks "74754368-,74758377^"; structure "1^,2^"; splice_chain "74754368^,74754439^";
chr15	juncbase	alternative_donor	74754372	74758377	.	+	.	gene_id "alternative_donor.452"; transcript_id "alternative_donor.452"; gene_name "CUFF.1729"; flanks "74754372-,74758377^"; structure "1^,2^"; splice_chain "74754372^,74754439^";
chr15	juncbase	jcn_only_AA	83355771	83357488	.	-	.	gene_id "jcn_only_AA.528"; transcript_id "jcn_only_AA.528"; gene_name "CUFF.1743"; flanks "83355771-,83357488^"; structure "1-,2-"; splice_chain "83357250-,83355771-";
chr15	juncbase	jcn_only_AA	83350332	83357488	.	-	.	gene_id "jcn_only_AA.529"; transcript_id "jcn_only_AA.529"; gene_name "CUFF.1743"; flanks "83350332-,83357488^"; structure "1-,2-"; splice_chain "83357250-,83350332-";
chr15	juncbase	alternative_donor	74754439	74758377	.	+	.	gene_id "alternative_donor.453"; transcript_id "alternative_donor.453"; gene_name "CUFF.1729"; flanks "74754439-,74758377^"; structure "1^,2^"; splice_chain "74754372^,74754439^";
chr15	juncbase	alternative_donor	74754368	74758377	.	+	.	gene_id "alternative_donor.454"; transcript_id "alternative_donor.454"; gene_name "CUFF.1729"; flanks "74754368-,74758377^"; structure "1^,2^"; splice_chain "74754368^,74754372^";
chr15	juncbase	intron_retention	83349224	83348981	.	-	.	gene_id "intron_retention.517"; transcript_id "intron_retention.517"; gene_name "CUFF.1743"; flanks "83349224-,83348981^"; structure "0,1^2-"; splice_chain ",83349224^83348981-";
chr15	juncbase	intron_retention	84873352	84873268	.	-	.	gene_id "intron_retention.518"; transcript_id "intron_retention.518"; gene_name ""; flanks "84873352-,84873268^"; structure "0,1^2-"; splice_chain ",84873352^84873268-";
chr15	juncbase	jcn_only_AA	74771619	74773392	.	+	.	gene_id "jcn_only_AA.530"; transcript_id "jcn_only_AA.530"; gene_name "CUFF.1729"; flanks "74771619-,74773392^"; structure "1-,2-"; splice_chain "74772962-,74773392-";
chr15	juncbase	alternative_acceptor	45470504	45492925	.	-	.	gene_id "alternative_acceptor.396"; transcript_id "alternative_acceptor.396"; gene_name "CUFF.1683"; flanks "45470504-,45492925^"; structure "1-,2-"; splice_chain "45491298-,45470504-";
chr15	juncbase	alternative_acceptor	45491318	45492925	.	-	.	gene_id "alternative_acceptor.397"; transcript_id "alternative_acceptor.397"; gene_name "CUFF.1683"; flanks "45491318-,45492925^"; structure "1-,2-"; splice_chain "45491318-,45491298-";
chr15	juncbase	jcn_only_AD	77713079	77750746	.	+	.	gene_id "jcn_only_AD.547"; transcript_id "jcn_only_AD.547"; gene_name "CUFF.1735"; flanks "77713079-,77750746^"; structure "1^,2^"; splice_chain "77713079^,77713436^";
chr15	juncbase	jcn_only_AD	77740153	77750746	.	+	.	gene_id "jcn_only_AD.548"; transcript_id "jcn_only_AD.548"; gene_name "CUFF.1735"; flanks "77740153-,77750746^"; structure "1^,2^"; splice_chain "77713436^,77740153^";
chr15	juncbase	jcn_only_AD	77713346	77750746	.	+	.	gene_id "jcn_only_AD.549"; transcript_id "jcn_only_AD.549"; gene_name "CUFF.1735"; flanks "77713346-,77750746^"; structure "1^,2^"; splice_chain "77713346^,77713436^";
chr15	juncbase	jcn_only_AD	77750626	77750746	.	+	.	gene_id "jcn_only_AD.550"; transcript_id "jcn_only_AD.550"; gene_name "CUFF.1735"; flanks "77750626-,77750746^"; structure "1^,2^"; splice_chain "77713436^,77750626^";
chr15	juncbase	alternative_acceptor	40756746	40757543	.	+	.	gene_id "alternative_acceptor.398"; transcript_id "alternative_acceptor.398"; gene_name ""; flanks "40756746-,40757543^"; structure "1-,2-"; splice_chain "40757534-,40757543-";
chr15	juncbase	cassette	45467417	45464276	.	-	.	gene_id "cassette.315"; transcript_id "cassette.315"; gene_name "CUFF.1683"; flanks "45467417-,45464276^"; structure "0,1-2^"; splice_chain ",45464516-45464345^";
chr15	juncbase	jcn_only_AD	83334209	83333695	.	-	.	gene_id "jcn_only_AD.551"; transcript_id "jcn_only_AD.551"; gene_name "CUFF.1743"; flanks "83334209-,83333695^"; structure "1^,2^"; splice_chain "83334209^,83333999^";
chr15	juncbase	alternative_acceptor	44892830	44898223	.	-	.	gene_id "alternative_acceptor.399"; transcript_id "alternative_acceptor.399"; gene_name "CUFF.1681"; flanks "44892830-,44898223^"; structure "1-,2-"; splice_chain "44896395-,44892830-";
chr15	juncbase	jcn_only_AA	78471173	78471892	.	-	.	gene_id "jcn_only_AA.531"; transcript_id "jcn_only_AA.531"; gene_name "CUFF.1737"; flanks "78471173-,78471892^"; structure "1-,2-"; splice_chain "78471322-,78471173-";
chr15	juncbase	intron_retention	64447102	64447306	.	+	.	gene_id "intron_retention.519"; transcript_id "intron_retention.519"; gene_name "CUFF.1720"; flanks "64447102-,64447306^"; structure "0,1^2-"; splice_chain ",64447102^64447306-";
chr15	juncbase	cassette	77712348	77578846	.	-	.	gene_id "cassette.316"; transcript_id "cassette.316"; gene_name "CUFF.1734"; flanks "77712348-,77578846^"; structure "0,1-2^"; splice_chain ",77657567-77657505^";
chr15	juncbase	alternative_donor	91304485	91306196	.	+	.	gene_id "alternative_donor.455"; transcript_id "alternative_donor.455"; gene_name "CUFF.1758"; flanks "91304485-,91306196^"; structure "1^,2^"; splice_chain "91304485^,91305652^";
chr15	juncbase	cassette	30771396	30776705	.	+	.	gene_id "cassette.317"; transcript_id "cassette.317"; gene_name "CUFF.1662"; flanks "30771396-,30776705^"; structure "0,1-2^"; splice_chain ",30772945-30773110^";
chr15	juncbase	cassette	41120585	41108451	.	-	.	gene_id "cassette.318"; transcript_id "cassette.318"; gene_name "CUFF.1671"; flanks "41120585-,41108451^"; structure "0,1-2^"; splice_chain ",41109545-41109430^";
chr15	juncbase	jcn_only_AD	45467417	45460331	.	-	.	gene_id "jcn_only_AD.552"; transcript_id "jcn_only_AD.552"; gene_name ""; flanks "45467417-,45460331^"; structure "1^,2^"; splice_chain "45467417^,45464081^";
chr15	juncbase	alternative_donor	66789980	66787757	.	-	.	gene_id "alternative_donor.456"; transcript_id "alternative_donor.456"; gene_name "CUFF.1723"; flanks "66789980-,66787757^"; structure "1^,2^"; splice_chain "66789980^,66789828^";
chr15	juncbase	alternative_acceptor	90432368	90437113	.	-	.	gene_id "alternative_acceptor.400"; transcript_id "alternative_acceptor.400"; gene_name "CUFF.1757"; flanks "90432368-,90437113^"; structure "1-,2-"; splice_chain "90432372-,90432368-";
chr15	juncbase	jcn_only_AA	24803468	24811803	.	+	.	gene_id "jcn_only_AA.532"; transcript_id "jcn_only_AA.532"; gene_name ""; flanks "24803468-,24811803^"; structure "1-,2-"; splice_chain "24811236-,24811803-";
chr15	juncbase	jcn_only_AD	25223465	25225094	.	+	.	gene_id "jcn_only_AD.553"; transcript_id "jcn_only_AD.553"; gene_name "CUFF.1655"; flanks "25223465-,25225094^"; structure "1^,2^"; splice_chain "25223465^,25224789^";
chr15	juncbase	cassette	40565877	40568128	.	+	.	gene_id "cassette.319"; transcript_id "cassette.319"; gene_name "CUFF.1665"; flanks "40565877-,40568128^"; structure "0,1-2^"; splice_chain ",40566343-40566477^";
chr15	juncbase	jcn_only_AD	55789910	55783454	.	-	.	gene_id "jcn_only_AD.554"; transcript_id "jcn_only_AD.554"; gene_name "CUFF.1699"; flanks "55789910-,55783454^"; structure "1^,2^"; splice_chain "55789910^,55787326^";
chr15	juncbase	jcn_only_AD	66789980	66787757	.	-	.	gene_id "jcn_only_AD.555"; transcript_id "jcn_only_AD.555"; gene_name "CUFF.1723"; flanks "66789980-,66787757^"; structure "1^,2^"; splice_chain "66789980^,66789828^";
chr15	juncbase	jcn_only_AD	57426698	57458600	.	+	.	gene_id "jcn_only_AD.556"; transcript_id "jcn_only_AD.556"; gene_name "CUFF.1704"; flanks "57426698-,57458600^"; structure "1^,2^"; splice_chain "57384089^,57426698^";
chr15	juncbase	jcn_only_AD	57401515	57458600	.	+	.	gene_id "jcn_only_AD.557"; transcript_id "jcn_only_AD.557"; gene_name "CUFF.1704"; flanks "57401515-,57458600^"; structure "1^,2^"; splice_chain "57384089^,57401515^";
chr15	juncbase	jcn_only_AD	57422170	57458600	.	+	.	gene_id "jcn_only_AD.558"; transcript_id "jcn_only_AD.558"; gene_name "CUFF.1704"; flanks "57422170-,57458600^"; structure "1^,2^"; splice_chain "57384089^,57422170^";
chr15	juncbase	cassette	29131424	29213843	.	+	.	gene_id "cassette.320"; transcript_id "cassette.320"; gene_name "CUFF.1659"; flanks "29131424-,29213843^"; structure "0,1-2^"; splice_chain ",29140666-29140755^";
chr15	juncbase	alternative_donor	45467417	45464516	.	-	.	gene_id "alternative_donor.457"; transcript_id "alternative_donor.457"; gene_name "CUFF.1683"; flanks "45467417-,45464516^"; structure "1^,2^"; splice_chain "45467417^,45465774^";
chr15	juncbase	alternative_donor	74754439	74758377	.	+	.	gene_id "alternative_donor.458"; transcript_id "alternative_donor.458"; gene_name "CUFF.1729"; flanks "74754439-,74758377^"; structure "1^,2^"; splice_chain "74754368^,74754439^";
chr15	juncbase	alternative_donor	74754372	74758377	.	+	.	gene_id "alternative_donor.459"; transcript_id "alternative_donor.459"; gene_name "CUFF.1729"; flanks "74754372-,74758377^"; structure "1^,2^"; splice_chain "74754368^,74754372^";
chr15	juncbase	cassette	55727103	55722977	.	-	.	gene_id "cassette.321"; transcript_id "cassette.321"; gene_name "CUFF.1699"; flanks "55727103-,55722977^"; structure "0,1-2^"; splice_chain ",55724800-55724695^";
chr15	juncbase	alternative_acceptor	78471173	78471892	.	-	.	gene_id "alternative_acceptor.401"; transcript_id "alternative_acceptor.401"; gene_name "CUFF.1737"; flanks "78471173-,78471892^"; structure "1-,2-"; splice_chain "78471322-,78471173-";
chr15	juncbase	alternative_donor	77750838	77756582	.	+	.	gene_id "alternative_donor.460"; transcript_id "alternative_donor.460"; gene_name "CUFF.1735"; flanks "77750838-,77756582^"; structure "1^,2^"; splice_chain "77750838^,77750900^";
chr15	juncbase	cassette	64668942	64658274	.	-	.	gene_id "cassette.322"; transcript_id "cassette.322"; gene_name "CUFF.1721"; flanks "64668942-,64658274^"; structure "0,1-2^"; splice_chain ",64665963-64665897^";
chr15	juncbase	cassette	55783321	55742565	.	-	.	gene_id "cassette.323"; transcript_id "cassette.323"; gene_name "CUFF.1699"; flanks "55783321-,55742565^"; structure "0,1-2^"; splice_chain ",55759359-55759128^";
chr15	juncbase	cassette	66789980	66786890	.	-	.	gene_id "cassette.324"; transcript_id "cassette.324"; gene_name "CUFF.1723"; flanks "66789980-,66786890^"; structure "0,1-2^"; splice_chain ",66787757-66787668^";
chr15	juncbase	cassette	66789828	66786890	.	-	.	gene_id "cassette.325"; transcript_id "cassette.325"; gene_name "CUFF.1723"; flanks "66789828-,66786890^"; structure "0,1-2^"; splice_chain ",66787757-66787668^";
chr15	juncbase	cassette	57543621	57545460	.	+	.	gene_id "cassette.326"; transcript_id "cassette.326"; gene_name "CUFF.1704"; flanks "57543621-,57545460^"; structure "0,1-2^"; splice_chain ",57544619-57544690^";
chr15	juncbase	jcn_only_AD	24825477	24869115	.	+	.	gene_id "jcn_only_AD.559"; transcript_id "jcn_only_AD.559"; gene_name "CUFF.1652"; flanks "24825477-,24869115^"; structure "1^,2^"; splice_chain "24825477^,24832882^";
chr15	juncbase	jcn_only_AD	45740999	45752644	.	+	.	gene_id "jcn_only_AD.560"; transcript_id "jcn_only_AD.560"; gene_name "CUFF.1685"; flanks "45740999-,45752644^"; structure "1^,2^"; splice_chain "45740999^,45751248^";
chr15	juncbase	alternative_acceptor	84871759	84873178	.	-	.	gene_id "alternative_acceptor.402"; transcript_id "alternative_acceptor.402"; gene_name ""; flanks "84871759-,84873178^"; structure "1-,2-"; splice_chain "84871772-,84871759-";
chr15	juncbase	alternative_donor	77713079	77750746	.	+	.	gene_id "alternative_donor.461"; transcript_id "alternative_donor.461"; gene_name "CUFF.1735"; flanks "77713079-,77750746^"; structure "1^,2^"; splice_chain "77713079^,77713346^";
chr15	juncbase	alternative_donor	77740153	77750746	.	+	.	gene_id "alternative_donor.462"; transcript_id "alternative_donor.462"; gene_name "CUFF.1735"; flanks "77740153-,77750746^"; structure "1^,2^"; splice_chain "77713346^,77740153^";
chr15	juncbase	alternative_donor	77750626	77750746	.	+	.	gene_id "alternative_donor.463"; transcript_id "alternative_donor.463"; gene_name "CUFF.1735"; flanks "77750626-,77750746^"; structure "1^,2^"; splice_chain "77713346^,77750626^";
chr15	juncbase	alternative_donor	77713436	77750746	.	+	.	gene_id "alternative_donor.464"; transcript_id "alternative_donor.464"; gene_name "CUFF.1735"; flanks "77713436-,77750746^"; structure "1^,2^"; splice_chain "77713346^,77713436^";
chr15	juncbase	intron_retention	40545215	40545379	.	+	.	gene_id "intron_retention.520"; transcript_id "intron_retention.520"; gene_name "CUFF.1665"; flanks "40545215-,40545379^"; structure "0,1^2-"; splice_chain ",40545215^40545379-";
chr15	juncbase	alternative_acceptor	50822126	50830906	.	-	.	gene_id "alternative_acceptor.403"; transcript_id "alternative_acceptor.403"; gene_name "CUFF.1687"; flanks "50822126-,50830906^"; structure "1-,2-"; splice_chain "50824424-,50822126-";
chr15	juncbase	jcn_only_AD	90395593	90380954	.	-	.	gene_id "jcn_only_AD.561"; transcript_id "jcn_only_AD.561"; gene_name "CUFF.1757"; flanks "90395593-,90380954^"; structure "1^,2^"; splice_chain "90395593^,90391825^";
chr15	juncbase	jcn_only_AD	90414707	90380954	.	-	.	gene_id "jcn_only_AD.562"; transcript_id "jcn_only_AD.562"; gene_name "CUFF.1757"; flanks "90414707-,90380954^"; structure "1^,2^"; splice_chain "90414707^,90391825^";
chr15	juncbase	jcn_only_AD	90381261	90380954	.	-	.	gene_id "jcn_only_AD.563"; transcript_id "jcn_only_AD.563"; gene_name "CUFF.1757"; flanks "90381261-,90380954^"; structure "1^,2^"; splice_chain "90391825^,90381261^";
chr15	juncbase	intron_retention	41222880	41223701	.	+	.	gene_id "intron_retention.521"; transcript_id "intron_retention.521"; gene_name "CUFF.1672"; flanks "41222880-,41223701^"; structure "0,1^2-"; splice_chain ",41222880^41223701-";
chr15	juncbase	jcn_only_AD	57490023	57523350	.	+	.	gene_id "jcn_only_AD.564"; transcript_id "jcn_only_AD.564"; gene_name "CUFF.1704"; flanks "57490023-,57523350^"; structure "1^,2^"; splice_chain "57490023^,57511788^";
chr15	juncbase	jcn_only_AD	57506594	57523350	.	+	.	gene_id "jcn_only_AD.565"; transcript_id "jcn_only_AD.565"; gene_name "CUFF.1704"; flanks "57506594-,57523350^"; structure "1^,2^"; splice_chain "57506594^,57511788^";
chr15	juncbase	jcn_only_AD	90391825	90380954	.	-	.	gene_id "jcn_only_AD.566"; transcript_id "jcn_only_AD.566"; gene_name ""; flanks "90391825-,90380954^"; structure "1^,2^"; splice_chain "90414707^,90391825^";
chr15	juncbase	jcn_only_AD	90395593	90380954	.	-	.	gene_id "jcn_only_AD.567"; transcript_id "jcn_only_AD.567"; gene_name ""; flanks "90395593-,90380954^"; structure "1^,2^"; splice_chain "90414707^,90395593^";
chr15	juncbase	jcn_only_AD	90381261	90380954	.	-	.	gene_id "jcn_only_AD.568"; transcript_id "jcn_only_AD.568"; gene_name ""; flanks "90381261-,90380954^"; structure "1^,2^"; splice_chain "90414707^,90381261^";
chr15	juncbase	alternative_acceptor	83331985	83332312	.	-	.	gene_id "alternative_acceptor.404"; transcript_id "alternative_acceptor.404"; gene_name "CUFF.1743"; flanks "83331985-,83332312^"; structure "1-,2-"; splice_chain "83332047-,83331985-";
chr15	juncbase	jcn_only_AA	45464200	45464345	.	-	.	gene_id "jcn_only_AA.533"; transcript_id "jcn_only_AA.533"; gene_name "CUFF.1683"; flanks "45464200-,45464345^"; structure "1-,2-"; splice_chain "45464276-,45464200-";
chr15	juncbase	cassette	102241289	102226265	.	-	.	gene_id "cassette.327"; transcript_id "cassette.327"; gene_name "CUFF.1764"; flanks "102241289-,102226265^"; structure "0,1-2^"; splice_chain ",102239638-102239534^";
chr15	juncbase	intron_retention	44913957	44912601	.	-	.	gene_id "intron_retention.522"; transcript_id "intron_retention.522"; gene_name "CUFF.1681"; flanks "44913957-,44912601^"; structure "0,1^2-"; splice_chain ",44913957^44912601-";
chr15	juncbase	jcn_only_AD	57384089	57458600	.	+	.	gene_id "jcn_only_AD.569"; transcript_id "jcn_only_AD.569"; gene_name "CUFF.1704"; flanks "57384089-,57458600^"; structure "1^,2^"; splice_chain "57384089^,57422170^";
chr15	juncbase	jcn_only_AD	57426698	57458600	.	+	.	gene_id "jcn_only_AD.570"; transcript_id "jcn_only_AD.570"; gene_name "CUFF.1704"; flanks "57426698-,57458600^"; structure "1^,2^"; splice_chain "57422170^,57426698^";
chr15	juncbase	jcn_only_AD	57401515	57458600	.	+	.	gene_id "jcn_only_AD.571"; transcript_id "jcn_only_AD.571"; gene_name "CUFF.1704"; flanks "57401515-,57458600^"; structure "1^,2^"; splice_chain "57401515^,57422170^";
chr15	juncbase	alternative_donor	84898604	84873727	.	-	.	gene_id "alternative_donor.465"; transcript_id "alternative_donor.465"; gene_name ""; flanks "84898604-,84873727^"; structure "1^,2^"; splice_chain "84898604^,84873983^";
chr15	juncbase	jcn_only_AD	90391825	90380954	.	-	.	gene_id "jcn_only_AD.572"; transcript_id "jcn_only_AD.572"; gene_name "CUFF.1737,CUFF.1757"; flanks "90391825-,90380954^"; structure "1^,2^"; splice_chain "90391825^,90381261^";
chr15	juncbase	jcn_only_AD	90395593	90380954	.	-	.	gene_id "jcn_only_AD.573"; transcript_id "jcn_only_AD.573"; gene_name "CUFF.1737,CUFF.1757"; flanks "90395593-,90380954^"; structure "1^,2^"; splice_chain "90395593^,90381261^";
chr15	juncbase	jcn_only_AD	90414707	90380954	.	-	.	gene_id "jcn_only_AD.574"; transcript_id "jcn_only_AD.574"; gene_name "CUFF.1737,CUFF.1757"; flanks "90414707-,90380954^"; structure "1^,2^"; splice_chain "90414707^,90381261^";
chr15	juncbase	jcn_only_AA	84871759	84873178	.	-	.	gene_id "jcn_only_AA.534"; transcript_id "jcn_only_AA.534"; gene_name ""; flanks "84871759-,84873178^"; structure "1-,2-"; splice_chain "84871772-,84871759-";
chr15	juncbase	cassette	44862723	44859790	.	-	.	gene_id "cassette.328"; transcript_id "cassette.328"; gene_name "CUFF.1681"; flanks "44862723-,44859790^"; structure "0,1-2^"; splice_chain ",44861703-44861596^";
chr15	juncbase	intron_retention	77713176	77750796	.	+	.	gene_id "intron_retention.523"; transcript_id "intron_retention.523"; gene_name ""; flanks "77713176-,77750796^"; structure "0,1^2-"; splice_chain ",77713176^77750796-";
chr15	juncbase	jcn_only_AA	57574796	57583027	.	+	.	gene_id "jcn_only_AA.535"; transcript_id "jcn_only_AA.535"; gene_name ""; flanks "57574796-,57583027^"; structure "1-,2-"; splice_chain "57578355-,57583027-";
chr15	juncbase	jcn_only_AA	57574796	57591424	.	+	.	gene_id "jcn_only_AA.536"; transcript_id "jcn_only_AA.536"; gene_name ""; flanks "57574796-,57591424^"; structure "1-,2-"; splice_chain "57578355-,57591424-";
chr15	juncbase	alternative_acceptor	74771619	74773392	.	+	.	gene_id "alternative_acceptor.405"; transcript_id "alternative_acceptor.405"; gene_name "CUFF.1729"; flanks "74771619-,74773392^"; structure "1-,2-"; splice_chain "74772962-,74773392-";
chr15	juncbase	intron_retention	44890829	44890571	.	-	.	gene_id "intron_retention.524"; transcript_id "intron_retention.524"; gene_name "CUFF.1681"; flanks "44890829-,44890571^"; structure "0,1^2-"; splice_chain ",44890829^44890571-";
chr15	juncbase	cassette	102201915	102197239	.	-	.	gene_id "cassette.329"; transcript_id "cassette.329"; gene_name "CUFF.1764"; flanks "102201915-,102197239^"; structure "0,1-2^"; splice_chain ",102198060-102197988^";
chr15	juncbase	alternative_donor	66787668	66786890	.	-	.	gene_id "alternative_donor.466"; transcript_id "alternative_donor.466"; gene_name "CUFF.1723"; flanks "66787668-,66786890^"; structure "1^,2^"; splice_chain "66787668^,66787241^";
chr15	juncbase	jcn_only_AA	25207356	25222925	.	+	.	gene_id "jcn_only_AA.537"; transcript_id "jcn_only_AA.537"; gene_name "CUFF.1655"; flanks "25207356-,25222925^"; structure "1-,2-"; splice_chain "25213079-,25222925-";
chr15	juncbase	intron_retention	44865745	44865018	.	-	.	gene_id "intron_retention.525"; transcript_id "intron_retention.525"; gene_name ""; flanks "44865745-,44865018^"; structure "0,1^2-"; splice_chain ",44865745^44865018-";
chr15	juncbase	cassette	24811947	24814930	.	+	.	gene_id "cassette.330"; transcript_id "cassette.330"; gene_name "CUFF.1652"; flanks "24811947-,24814930^"; structure "0,1-2^"; splice_chain ",24813678-24813710^";
chr15	juncbase	jcn_only_AD	83366609	83358205	.	-	.	gene_id "jcn_only_AD.575"; transcript_id "jcn_only_AD.575"; gene_name "CUFF.1743"; flanks "83366609-,83358205^"; structure "1^,2^"; splice_chain "83377524^,83366609^";
chr15	juncbase	jcn_only_AD	83378346	83358205	.	-	.	gene_id "jcn_only_AD.576"; transcript_id "jcn_only_AD.576"; gene_name "CUFF.1743"; flanks "83378346-,83358205^"; structure "1^,2^"; splice_chain "83378346^,83377524^";
chr15	juncbase	jcn_only_AD	83358515	83358205	.	-	.	gene_id "jcn_only_AD.577"; transcript_id "jcn_only_AD.577"; gene_name "CUFF.1743"; flanks "83358515-,83358205^"; structure "1^,2^"; splice_chain "83377524^,83358515^";
chr15	juncbase	alternative_donor	57211104	57212090	.	+	.	gene_id "alternative_donor.467"; transcript_id "alternative_donor.467"; gene_name "CUFF.1704"; flanks "57211104-,57212090^"; structure "1^,2^"; splice_chain "57211104^,57211426^";
chr15	juncbase	jcn_only_AD	45467417	45464516	.	-	.	gene_id "jcn_only_AD.578"; transcript_id "jcn_only_AD.578"; gene_name "CUFF.1683"; flanks "45467417-,45464516^"; structure "1^,2^"; splice_chain "45467417^,45465774^";
chr15	juncbase	alternative_acceptor	83355771	83357488	.	-	.	gene_id "alternative_acceptor.406"; transcript_id "alternative_acceptor.406"; gene_name "CUFF.1743"; flanks "83355771-,83357488^"; structure "1-,2-"; splice_chain "83357250-,83355771-";
chr15	juncbase	alternative_acceptor	83350332	83357488	.	-	.	gene_id "alternative_acceptor.407"; transcript_id "alternative_acceptor.407"; gene_name "CUFF.1743"; flanks "83350332-,83357488^"; structure "1-,2-"; splice_chain "83357250-,83350332-";
chr15	juncbase	jcn_only_AD	83357910	83350332	.	-	.	gene_id "jcn_only_AD.579"; transcript_id "jcn_only_AD.579"; gene_name "CUFF.1697"; flanks "83357910-,83350332^"; structure "1^,2^"; splice_chain "83357910^,83357488^";
chr15	juncbase	intron_retention	97326819	97327383	.	+	.	gene_id "intron_retention.526"; transcript_id "intron_retention.526"; gene_name "CUFF.1761"; flanks "97326819-,97327383^"; structure "0,1^2-"; splice_chain ",97326819^97327383-";
chr15	juncbase	alternative_acceptor	83333695	83334209	.	-	.	gene_id "alternative_acceptor.408"; transcript_id "alternative_acceptor.408"; gene_name "CUFF.1743"; flanks "83333695-,83334209^"; structure "1-,2-"; splice_chain "83334055-,83333695-";
chr15	juncbase	jcn_only_AD	55484918	55483245	.	-	.	gene_id "jcn_only_AD.580"; transcript_id "jcn_only_AD.580"; gene_name "CUFF.1683,CUFF.1697"; flanks "55484918-,55483245^"; structure "1^,2^"; splice_chain "55484918^,55484601^";
chr15	juncbase	alternative_donor	57490023	57523350	.	+	.	gene_id "alternative_donor.468"; transcript_id "alternative_donor.468"; gene_name "CUFF.1704"; flanks "57490023-,57523350^"; structure "1^,2^"; splice_chain "57490023^,57511788^";
chr15	juncbase	alternative_donor	57506594	57523350	.	+	.	gene_id "alternative_donor.469"; transcript_id "alternative_donor.469"; gene_name "CUFF.1704"; flanks "57506594-,57523350^"; structure "1^,2^"; splice_chain "57506594^,57511788^";
chr15	juncbase	jcn_only_AA	77713346	77750746	.	+	.	gene_id "jcn_only_AA.538"; transcript_id "jcn_only_AA.538"; gene_name "CUFF.1735,CUFF.1760"; flanks "77713346-,77750746^"; structure "1-,2-"; splice_chain "77740061-,77750746-";
chr15	juncbase	cassette	25225231	25244117	.	+	.	gene_id "cassette.331"; transcript_id "cassette.331"; gene_name "CUFF.1655"; flanks "25225231-,25244117^"; structure "0,1-2^"; splice_chain ",25226922-25227584^";
chr15	juncbase	jcn_only_AD	91304485	91306196	.	+	.	gene_id "jcn_only_AD.581"; transcript_id "jcn_only_AD.581"; gene_name "CUFF.1758"; flanks "91304485-,91306196^"; structure "1^,2^"; splice_chain "91304485^,91305652^";
chr15	juncbase	alternative_acceptor	57574796	57578355	.	+	.	gene_id "alternative_acceptor.409"; transcript_id "alternative_acceptor.409"; gene_name "CUFF.1704"; flanks "57574796-,57578355^"; structure "1-,2-"; splice_chain "57578355-,57583027-";
chr15	juncbase	alternative_acceptor	57574796	57591424	.	+	.	gene_id "alternative_acceptor.410"; transcript_id "alternative_acceptor.410"; gene_name "CUFF.1704"; flanks "57574796-,57591424^"; structure "1-,2-"; splice_chain "57583027-,57591424-";
chr15	juncbase	alternative_donor	83357910	83350332	.	-	.	gene_id "alternative_donor.470"; transcript_id "alternative_donor.470"; gene_name "CUFF.1697"; flanks "83357910-,83350332^"; structure "1^,2^"; splice_chain "83357910^,83357488^";
chr15	juncbase	intron_retention	64445883	64446134	.	+	.	gene_id "intron_retention.527"; transcript_id "intron_retention.527"; gene_name "CUFF.1720"; flanks "64445883-,64446134^"; structure "0,1^2-"; splice_chain ",64445883^64446134-";
chr15	juncbase	intron_retention	83357488	83355771	.	-	.	gene_id "intron_retention.528"; transcript_id "intron_retention.528"; gene_name ""; flanks "83357488-,83355771^"; structure "0,1^2-"; splice_chain ",83357488^83355771-";
chr15	juncbase	jcn_only_AA	40558696	40564425	.	+	.	gene_id "jcn_only_AA.539"; transcript_id "jcn_only_AA.539"; gene_name "CUFF.1665"; flanks "40558696-,40564425^"; structure "1-,2-"; splice_chain "40559124-,40564425-";
chr15	juncbase	cassette	40509868	40545379	.	+	.	gene_id "cassette.332"; transcript_id "cassette.332"; gene_name "CUFF.1665"; flanks "40509868-,40545379^"; structure "0,1-2^"; splice_chain ",40532800-40532882^";
chr15	juncbase	cassette	40531336	40545379	.	+	.	gene_id "cassette.333"; transcript_id "cassette.333"; gene_name "CUFF.1665"; flanks "40531336-,40545379^"; structure "0,1-2^"; splice_chain ",40532800-40532882^";
chr15	juncbase	cassette	57213296	57355948	.	+	.	gene_id "cassette.334"; transcript_id "cassette.334"; gene_name "CUFF.1704"; flanks "57213296-,57355948^"; structure "0,1-2^"; splice_chain ",57293547-57293582^";
chr15	juncbase	jcn_only_AD	91290720	91292597	.	+	.	gene_id "jcn_only_AD.582"; transcript_id "jcn_only_AD.582"; gene_name "CUFF.1758"; flanks "91290720-,91292597^"; structure "1^,2^"; splice_chain "91290720^,91290891^";
chr15	juncbase	jcn_only_AD	57213296	57565228	.	+	.	gene_id "jcn_only_AD.583"; transcript_id "jcn_only_AD.583"; gene_name "CUFF.1704"; flanks "57213296-,57565228^"; structure "1^,2^"; splice_chain "57213296^,57555472^";
chr15	juncbase	jcn_only_AA	50822126	50830906	.	-	.	gene_id "jcn_only_AA.540"; transcript_id "jcn_only_AA.540"; gene_name "CUFF.1687"; flanks "50822126-,50830906^"; structure "1-,2-"; splice_chain "50824424-,50822126-";
chr15	juncbase	jcn_only_AA	83357250	83357488	.	-	.	gene_id "jcn_only_AA.541"; transcript_id "jcn_only_AA.541"; gene_name "CUFF.1743"; flanks "83357250-,83357488^"; structure "1-,2-"; splice_chain "83357250-,83350332-";
chr15	juncbase	jcn_only_AA	83355771	83357488	.	-	.	gene_id "jcn_only_AA.542"; transcript_id "jcn_only_AA.542"; gene_name "CUFF.1743"; flanks "83355771-,83357488^"; structure "1-,2-"; splice_chain "83355771-,83350332-";
chr15	juncbase	alternative_donor	90391825	90380954	.	-	.	gene_id "alternative_donor.471"; transcript_id "alternative_donor.471"; gene_name ""; flanks "90391825-,90380954^"; structure "1^,2^"; splice_chain "90414707^,90391825^";
chr15	juncbase	alternative_donor	90395593	90380954	.	-	.	gene_id "alternative_donor.472"; transcript_id "alternative_donor.472"; gene_name ""; flanks "90395593-,90380954^"; structure "1^,2^"; splice_chain "90414707^,90395593^";
chr15	juncbase	alternative_donor	90381261	90380954	.	-	.	gene_id "alternative_donor.473"; transcript_id "alternative_donor.473"; gene_name ""; flanks "90381261-,90380954^"; structure "1^,2^"; splice_chain "90414707^,90381261^";
chr15	juncbase	alternative_donor	24780953	24811803	.	+	.	gene_id "alternative_donor.474"; transcript_id "alternative_donor.474"; gene_name "CUFF.1652"; flanks "24780953-,24811803^"; structure "1^,2^"; splice_chain "24780953^,24811359^";
chr15	juncbase	alternative_donor	24803468	24811803	.	+	.	gene_id "alternative_donor.475"; transcript_id "alternative_donor.475"; gene_name "CUFF.1652"; flanks "24803468-,24811803^"; structure "1^,2^"; splice_chain "24803468^,24811359^";
chr15	juncbase	jcn_only_AD	57490023	57523350	.	+	.	gene_id "jcn_only_AD.584"; transcript_id "jcn_only_AD.584"; gene_name "CUFF.1704"; flanks "57490023-,57523350^"; structure "1^,2^"; splice_chain "57490023^,57506594^";
chr15	juncbase	jcn_only_AD	57511788	57523350	.	+	.	gene_id "jcn_only_AD.585"; transcript_id "jcn_only_AD.585"; gene_name "CUFF.1704"; flanks "57511788-,57523350^"; structure "1^,2^"; splice_chain "57506594^,57511788^";
chr15	juncbase	jcn_only_AA	77451038	77471132	.	-	.	gene_id "jcn_only_AA.543"; transcript_id "jcn_only_AA.543"; gene_name "CUFF.1734"; flanks "77451038-,77471132^"; structure "1-,2-"; splice_chain "77470365-,77451038-";
chr15	juncbase	cassette	40545490	40556000	.	+	.	gene_id "cassette.335"; transcript_id "cassette.335"; gene_name "CUFF.1665"; flanks "40545490-,40556000^"; structure "0,1-2^"; splice_chain ",40549044-40549287^";
chr15	juncbase	alternative_donor	40558696	40564425	.	+	.	gene_id "alternative_donor.476"; transcript_id "alternative_donor.476"; gene_name "CUFF.1665"; flanks "40558696-,40564425^"; structure "1^,2^"; splice_chain "40558696^,40559198^";
chr15	juncbase	alternative_donor	55484918	55483245	.	-	.	gene_id "alternative_donor.477"; transcript_id "alternative_donor.477"; gene_name "CUFF.1683,CUFF.1697"; flanks "55484918-,55483245^"; structure "1^,2^"; splice_chain "55484918^,55484601^";
chr15	juncbase	jcn_only_AA	74758471	74771401	.	+	.	gene_id "jcn_only_AA.544"; transcript_id "jcn_only_AA.544"; gene_name "CUFF.1729,CUFF.1735"; flanks "74758471-,74771401^"; structure "1-,2-"; splice_chain "74771385-,74771401-";
chr15	juncbase	cassette	64444049	64444837	.	+	.	gene_id "cassette.336"; transcript_id "cassette.336"; gene_name "CUFF.1720"; flanks "64444049-,64444837^"; structure "0,1-2^"; splice_chain ",64444442-64444525^";
chr15	juncbase	jcn_only_AD	57384089	57458600	.	+	.	gene_id "jcn_only_AD.586"; transcript_id "jcn_only_AD.586"; gene_name "CUFF.1704"; flanks "57384089-,57458600^"; structure "1^,2^"; splice_chain "57384089^,57426698^";
chr15	juncbase	jcn_only_AD	57401515	57458600	.	+	.	gene_id "jcn_only_AD.587"; transcript_id "jcn_only_AD.587"; gene_name "CUFF.1704"; flanks "57401515-,57458600^"; structure "1^,2^"; splice_chain "57401515^,57426698^";
chr15	juncbase	jcn_only_AD	57422170	57458600	.	+	.	gene_id "jcn_only_AD.588"; transcript_id "jcn_only_AD.588"; gene_name "CUFF.1704"; flanks "57422170-,57458600^"; structure "1^,2^"; splice_chain "57422170^,57426698^";
chr15	juncbase	jcn_only_AD	77750838	77756582	.	+	.	gene_id "jcn_only_AD.589"; transcript_id "jcn_only_AD.589"; gene_name "CUFF.1735"; flanks "77750838-,77756582^"; structure "1^,2^"; splice_chain "77750838^,77750900^";
chr15	juncbase	intron_retention	83357488	83357250	.	-	.	gene_id "intron_retention.529"; transcript_id "intron_retention.529"; gene_name ""; flanks "83357488-,83357250^"; structure "0,1^2-"; splice_chain ",83357488^83357250-";
chr15	juncbase	jcn_only_AD	29282999	29287956	.	+	.	gene_id "jcn_only_AD.590"; transcript_id "jcn_only_AD.590"; gene_name "CUFF.1659"; flanks "29282999-,29287956^"; structure "1^,2^"; splice_chain "29213952^,29282999^";
chr15	juncbase	jcn_only_AD	29213921	29287956	.	+	.	gene_id "jcn_only_AD.591"; transcript_id "jcn_only_AD.591"; gene_name "CUFF.1659"; flanks "29213921-,29287956^"; structure "1^,2^"; splice_chain "29213921^,29213952^";
chr15	juncbase	jcn_only_AD	29253787	29287956	.	+	.	gene_id "jcn_only_AD.592"; transcript_id "jcn_only_AD.592"; gene_name "CUFF.1659"; flanks "29253787-,29287956^"; structure "1^,2^"; splice_chain "29213952^,29253787^";
chr15	juncbase	jcn_only_AD	57565460	57574643	.	+	.	gene_id "jcn_only_AD.593"; transcript_id "jcn_only_AD.593"; gene_name "CUFF.1704"; flanks "57565460-,57574643^"; structure "1^,2^"; splice_chain "57565460^,57573990^";
chr15	juncbase	jcn_only_AD	84898654	84874071	.	-	.	gene_id "jcn_only_AD.594"; transcript_id "jcn_only_AD.594"; gene_name "CUFF.1683"; flanks "84898654-,84874071^"; structure "1^,2^"; splice_chain "84898654^,84898604^";
chr15	juncbase	jcn_only_AD	63047892	63053880	.	+	.	gene_id "jcn_only_AD.595"; transcript_id "jcn_only_AD.595"; gene_name "CUFF.1717"; flanks "63047892-,63053880^"; structure "1^,2^"; splice_chain "63047892^,63050858^";
chr15	juncbase	alternative_donor	66786753	66783055	.	-	.	gene_id "alternative_donor.478"; transcript_id "alternative_donor.478"; gene_name "CUFF.1723"; flanks "66786753-,66783055^"; structure "1^,2^"; splice_chain "66786753^,66786615^";
chr15	juncbase	jcn_only_AA	90432368	90437113	.	-	.	gene_id "jcn_only_AA.545"; transcript_id "jcn_only_AA.545"; gene_name "CUFF.1757"; flanks "90432368-,90437113^"; structure "1-,2-"; splice_chain "90432372-,90432368-";
chr15	juncbase	alternative_donor	90437113	90432372	.	-	.	gene_id "alternative_donor.479"; transcript_id "alternative_donor.479"; gene_name "CUFF.1743,CUFF.1757"; flanks "90437113-,90432372^"; structure "1^,2^"; splice_chain "90437113^,90437109^";
chr15	juncbase	intron_retention	78080487	78080723	.	+	.	gene_id "intron_retention.530"; transcript_id "intron_retention.530"; gene_name "CUFF.1736"; flanks "78080487-,78080723^"; structure "0,1^2-"; splice_chain ",78080487^78080723-";
chr15	juncbase	jcn_only_AD	29282999	29287956	.	+	.	gene_id "jcn_only_AD.596"; transcript_id "jcn_only_AD.596"; gene_name "CUFF.1659"; flanks "29282999-,29287956^"; structure "1^,2^"; splice_chain "29253787^,29282999^";
chr15	juncbase	jcn_only_AD	29213952	29287956	.	+	.	gene_id "jcn_only_AD.597"; transcript_id "jcn_only_AD.597"; gene_name "CUFF.1659"; flanks "29213952-,29287956^"; structure "1^,2^"; splice_chain "29213952^,29253787^";
chr15	juncbase	jcn_only_AD	29213921	29287956	.	+	.	gene_id "jcn_only_AD.598"; transcript_id "jcn_only_AD.598"; gene_name "CUFF.1659"; flanks "29213921-,29287956^"; structure "1^,2^"; splice_chain "29213921^,29253787^";
chr15	juncbase	intron_retention	40568306	40569317	.	+	.	gene_id "intron_retention.531"; transcript_id "intron_retention.531"; gene_name "CUFF.1665"; flanks "40568306-,40569317^"; structure "0,1^2-"; splice_chain ",40568306^40569317-";
chr15	juncbase	alternative_donor	57490023	57523350	.	+	.	gene_id "alternative_donor.480"; transcript_id "alternative_donor.480"; gene_name "CUFF.1704"; flanks "57490023-,57523350^"; structure "1^,2^"; splice_chain "57490023^,57506594^";
chr15	juncbase	alternative_donor	57511788	57523350	.	+	.	gene_id "alternative_donor.481"; transcript_id "alternative_donor.481"; gene_name "CUFF.1704"; flanks "57511788-,57523350^"; structure "1^,2^"; splice_chain "57506594^,57511788^";
chr15	juncbase	alternative_donor	29282999	29287956	.	+	.	gene_id "alternative_donor.482"; transcript_id "alternative_donor.482"; gene_name "CUFF.1659"; flanks "29282999-,29287956^"; structure "1^,2^"; splice_chain "29253787^,29282999^";
chr15	juncbase	alternative_donor	29213952	29287956	.	+	.	gene_id "alternative_donor.483"; transcript_id "alternative_donor.483"; gene_name "CUFF.1659"; flanks "29213952-,29287956^"; structure "1^,2^"; splice_chain "29213952^,29253787^";
chr15	juncbase	alternative_donor	29213921	29287956	.	+	.	gene_id "alternative_donor.484"; transcript_id "alternative_donor.484"; gene_name "CUFF.1659"; flanks "29213921-,29287956^"; structure "1^,2^"; splice_chain "29213921^,29253787^";
chr15	juncbase	jcn_only_AA	75801368	75809600	.	-	.	gene_id "jcn_only_AA.546"; transcript_id "jcn_only_AA.546"; gene_name "CUFF.1732"; flanks "75801368-,75809600^"; structure "1-,2-"; splice_chain "75805779-,75801368-";
chr15	juncbase	alternative_donor	44912388	44907764	.	-	.	gene_id "alternative_donor.485"; transcript_id "alternative_donor.485"; gene_name "CUFF.1681"; flanks "44912388-,44907764^"; structure "1^,2^"; splice_chain "44912388^,44912323^";
chr15	juncbase	alternative_donor	31294233	31327956	.	+	.	gene_id "alternative_donor.486"; transcript_id "alternative_donor.486"; gene_name "CUFF.1663"; flanks "31294233-,31327956^"; structure "1^,2^"; splice_chain "31294233^,31327859^";
chr15	juncbase	cassette	90431753	90420656	.	-	.	gene_id "cassette.337"; transcript_id "cassette.337"; gene_name "CUFF.1757"; flanks "90431753-,90420656^"; structure "0,1-2^"; splice_chain ",90421532-90421497^";
chr15	juncbase	cassette	90431753	90414778	.	-	.	gene_id "cassette.338"; transcript_id "cassette.338"; gene_name "CUFF.1757"; flanks "90431753-,90414778^"; structure "0,1-2^"; splice_chain ",90421532-90421497^";
chr15	juncbase	alternative_donor	77713079	77750746	.	+	.	gene_id "alternative_donor.487"; transcript_id "alternative_donor.487"; gene_name "CUFF.1735"; flanks "77713079-,77750746^"; structure "1^,2^"; splice_chain "77713079^,77750626^";
chr15	juncbase	alternative_donor	77740153	77750746	.	+	.	gene_id "alternative_donor.488"; transcript_id "alternative_donor.488"; gene_name "CUFF.1735"; flanks "77740153-,77750746^"; structure "1^,2^"; splice_chain "77740153^,77750626^";
chr15	juncbase	alternative_donor	77713346	77750746	.	+	.	gene_id "alternative_donor.489"; transcript_id "alternative_donor.489"; gene_name "CUFF.1735"; flanks "77713346-,77750746^"; structure "1^,2^"; splice_chain "77713346^,77750626^";
chr15	juncbase	alternative_donor	77713436	77750746	.	+	.	gene_id "alternative_donor.490"; transcript_id "alternative_donor.490"; gene_name "CUFF.1735"; flanks "77713436-,77750746^"; structure "1^,2^"; splice_chain "77713436^,77750626^";
chr15	juncbase	alternative_donor	57506594	57523350	.	+	.	gene_id "alternative_donor.491"; transcript_id "alternative_donor.491"; gene_name "CUFF.1704"; flanks "57506594-,57523350^"; structure "1^,2^"; splice_chain "57490023^,57506594^";
chr15	juncbase	alternative_donor	57511788	57523350	.	+	.	gene_id "alternative_donor.492"; transcript_id "alternative_donor.492"; gene_name "CUFF.1704"; flanks "57511788-,57523350^"; structure "1^,2^"; splice_chain "57490023^,57511788^";
chr15	juncbase	alternative_acceptor	57574796	57578355	.	+	.	gene_id "alternative_acceptor.411"; transcript_id "alternative_acceptor.411"; gene_name "CUFF.1704"; flanks "57574796-,57578355^"; structure "1-,2-"; splice_chain "57578355-,57591424-";
chr15	juncbase	alternative_acceptor	57574796	57583027	.	+	.	gene_id "alternative_acceptor.412"; transcript_id "alternative_acceptor.412"; gene_name "CUFF.1704"; flanks "57574796-,57583027^"; structure "1-,2-"; splice_chain "57583027-,57591424-";
chr15	juncbase	jcn_only_AA	55790008	55790405	.	-	.	gene_id "jcn_only_AA.547"; transcript_id "jcn_only_AA.547"; gene_name "CUFF.1699"; flanks "55790008-,55790405^"; structure "1-,2-"; splice_chain "55790057-,55790008-";
chr15	juncbase	cassette	83725141	83710677	.	-	.	gene_id "cassette.339"; transcript_id "cassette.339"; gene_name "CUFF.1744"; flanks "83725141-,83710677^"; structure "0,1-2^"; splice_chain ",83718930-83718825^";
chr15	juncbase	jcn_only_AD	77740153	77750746	.	+	.	gene_id "jcn_only_AD.599"; transcript_id "jcn_only_AD.599"; gene_name "CUFF.1735"; flanks "77740153-,77750746^"; structure "1^,2^"; splice_chain "77713079^,77740153^";
chr15	juncbase	jcn_only_AD	77713346	77750746	.	+	.	gene_id "jcn_only_AD.600"; transcript_id "jcn_only_AD.600"; gene_name "CUFF.1735"; flanks "77713346-,77750746^"; structure "1^,2^"; splice_chain "77713079^,77713346^";
chr15	juncbase	jcn_only_AD	77750626	77750746	.	+	.	gene_id "jcn_only_AD.601"; transcript_id "jcn_only_AD.601"; gene_name "CUFF.1735"; flanks "77750626-,77750746^"; structure "1^,2^"; splice_chain "77713079^,77750626^";
chr15	juncbase	jcn_only_AD	77713436	77750746	.	+	.	gene_id "jcn_only_AD.602"; transcript_id "jcn_only_AD.602"; gene_name "CUFF.1735"; flanks "77713436-,77750746^"; structure "1^,2^"; splice_chain "77713079^,77713436^";
chr15	juncbase	jcn_only_AD	97326819	97327383	.	+	.	gene_id "jcn_only_AD.603"; transcript_id "jcn_only_AD.603"; gene_name "CUFF.1761"; flanks "97326819-,97327383^"; structure "1^,2^"; splice_chain "97326819^,97326974^";
chr15	juncbase	jcn_only_AD	97327060	97327383	.	+	.	gene_id "jcn_only_AD.604"; transcript_id "jcn_only_AD.604"; gene_name "CUFF.1761"; flanks "97327060-,97327383^"; structure "1^,2^"; splice_chain "97326974^,97327060^";
chr15	juncbase	jcn_only_AD	67713673	67700813	.	-	.	gene_id "jcn_only_AD.605"; transcript_id "jcn_only_AD.605"; gene_name "CUFF.1727"; flanks "67713673-,67700813^"; structure "1^,2^"; splice_chain "67713673^,67705841^";
chr15	juncbase	jcn_only_AD	29288009	29346048	.	+	.	gene_id "jcn_only_AD.606"; transcript_id "jcn_only_AD.606"; gene_name "CUFF.1659"; flanks "29288009-,29346048^"; structure "1^,2^"; splice_chain "29288009^,29336631^";
chr15	juncbase	alternative_acceptor	74758471	74771401	.	+	.	gene_id "alternative_acceptor.413"; transcript_id "alternative_acceptor.413"; gene_name "CUFF.1729,CUFF.1735"; flanks "74758471-,74771401^"; structure "1-,2-"; splice_chain "74771385-,74771401-";
chr15	juncbase	jcn_only_AD	90391825	90380954	.	-	.	gene_id "jcn_only_AD.607"; transcript_id "jcn_only_AD.607"; gene_name "CUFF.1757"; flanks "90391825-,90380954^"; structure "1^,2^"; splice_chain "90395593^,90391825^";
chr15	juncbase	jcn_only_AD	90414707	90380954	.	-	.	gene_id "jcn_only_AD.608"; transcript_id "jcn_only_AD.608"; gene_name "CUFF.1757"; flanks "90414707-,90380954^"; structure "1^,2^"; splice_chain "90414707^,90395593^";
chr15	juncbase	jcn_only_AD	90381261	90380954	.	-	.	gene_id "jcn_only_AD.609"; transcript_id "jcn_only_AD.609"; gene_name "CUFF.1757"; flanks "90381261-,90380954^"; structure "1^,2^"; splice_chain "90395593^,90381261^";
chr15	juncbase	alternative_donor	78537611	78501591	.	-	.	gene_id "alternative_donor.493"; transcript_id "alternative_donor.493"; gene_name ""; flanks "78537611-,78501591^"; structure "1^,2^"; splice_chain "78537611^,78504891^";
chr15	juncbase	jcn_only_AD	50830906	50822126	.	-	.	gene_id "jcn_only_AD.610"; transcript_id "jcn_only_AD.610"; gene_name "CUFF.1687"; flanks "50830906-,50822126^"; structure "1^,2^"; splice_chain "50830906^,50824209^";
chr15	juncbase	cassette	55486494	55485031	.	-	.	gene_id "cassette.340"; transcript_id "cassette.340"; gene_name "CUFF.1697"; flanks "55486494-,55485031^"; structure "0,1-2^"; splice_chain ",55486381-55486351^";
chr15	juncbase	intron_retention	83357488	83350332	.	-	.	gene_id "intron_retention.532"; transcript_id "intron_retention.532"; gene_name ""; flanks "83357488-,83350332^"; structure "0,1^2-"; splice_chain ",83357488^83350332-";
chr15	juncbase	jcn_only_AD	57506594	57523350	.	+	.	gene_id "jcn_only_AD.611"; transcript_id "jcn_only_AD.611"; gene_name "CUFF.1704"; flanks "57506594-,57523350^"; structure "1^,2^"; splice_chain "57490023^,57506594^";
chr15	juncbase	jcn_only_AD	57511788	57523350	.	+	.	gene_id "jcn_only_AD.612"; transcript_id "jcn_only_AD.612"; gene_name "CUFF.1704"; flanks "57511788-,57523350^"; structure "1^,2^"; splice_chain "57490023^,57511788^";
chr15	juncbase	intron_retention	64444049	64444837	.	+	.	gene_id "intron_retention.533"; transcript_id "intron_retention.533"; gene_name "CUFF.1720"; flanks "64444049-,64444837^"; structure "0,1^2-"; splice_chain ",64444049^64444837-";
chr15	juncbase	cassette	90431753	90414778	.	-	.	gene_id "cassette.341"; transcript_id "cassette.341"; gene_name "CUFF.1757"; flanks "90431753-,90414778^"; structure "0,1-2^"; splice_chain ",90420656-90420538^";
chr15	juncbase	cassette	90421497	90414778	.	-	.	gene_id "cassette.342"; transcript_id "cassette.342"; gene_name "CUFF.1757"; flanks "90421497-,90414778^"; structure "0,1-2^"; splice_chain ",90420656-90420538^";
chr15	juncbase	alternative_acceptor	55790008	55790405	.	-	.	gene_id "alternative_acceptor.414"; transcript_id "alternative_acceptor.414"; gene_name "CUFF.1699"; flanks "55790008-,55790405^"; structure "1-,2-"; splice_chain "55790057-,55790008-";
chr15	juncbase	cassette	91306387	91310140	.	+	.	gene_id "cassette.343"; transcript_id "cassette.343"; gene_name "CUFF.1758"; flanks "91306387-,91310140^"; structure "0,1-2^"; splice_chain ",91308526-91308644^";
chr15	juncbase	alternative_donor	67713673	67700813	.	-	.	gene_id "alternative_donor.494"; transcript_id "alternative_donor.494"; gene_name "CUFF.1727"; flanks "67713673-,67700813^"; structure "1^,2^"; splice_chain "67713673^,67705841^";
chr15	juncbase	jcn_only_AD	44884529	44881612	.	-	.	gene_id "jcn_only_AD.613"; transcript_id "jcn_only_AD.613"; gene_name "CUFF.1681"; flanks "44884529-,44881612^"; structure "1^,2^"; splice_chain "44884529^,44882619^";
chr15	juncbase	alternative_donor	45740999	45752644	.	+	.	gene_id "alternative_donor.495"; transcript_id "alternative_donor.495"; gene_name "CUFF.1685"; flanks "45740999-,45752644^"; structure "1^,2^"; splice_chain "45740999^,45751248^";
chr15	juncbase	alternative_donor	24811359	24811803	.	+	.	gene_id "alternative_donor.496"; transcript_id "alternative_donor.496"; gene_name "CUFF.1652"; flanks "24811359-,24811803^"; structure "1^,2^"; splice_chain "24803468^,24811359^";
chr15	juncbase	alternative_donor	24780953	24811803	.	+	.	gene_id "alternative_donor.497"; transcript_id "alternative_donor.497"; gene_name "CUFF.1652"; flanks "24780953-,24811803^"; structure "1^,2^"; splice_chain "24780953^,24803468^";
chr15	juncbase	jcn_only_AA	55783454	55789910	.	-	.	gene_id "jcn_only_AA.548"; transcript_id "jcn_only_AA.548"; gene_name "CUFF.1699"; flanks "55783454-,55789910^"; structure "1-,2-"; splice_chain "55787400-,55783454-";
chr15	juncbase	intron_retention	74753976	74773546	.	+	.	gene_id "intron_retention.534"; transcript_id "intron_retention.534"; gene_name "CUFF.1729"; flanks "74753976-,74773546^"; structure "0,1^2-"; splice_chain ",74753976^74773546-";
chr15	juncbase	alternative_donor	90391825	90380954	.	-	.	gene_id "alternative_donor.498"; transcript_id "alternative_donor.498"; gene_name "CUFF.1757"; flanks "90391825-,90380954^"; structure "1^,2^"; splice_chain "90395593^,90391825^";
chr15	juncbase	alternative_donor	90414707	90380954	.	-	.	gene_id "alternative_donor.499"; transcript_id "alternative_donor.499"; gene_name "CUFF.1757"; flanks "90414707-,90380954^"; structure "1^,2^"; splice_chain "90414707^,90395593^";
chr15	juncbase	alternative_donor	90381261	90380954	.	-	.	gene_id "alternative_donor.500"; transcript_id "alternative_donor.500"; gene_name "CUFF.1757"; flanks "90381261-,90380954^"; structure "1^,2^"; splice_chain "90395593^,90381261^";
chr15	juncbase	jcn_only_AA	57555472	57565231	.	+	.	gene_id "jcn_only_AA.549"; transcript_id "jcn_only_AA.549"; gene_name ""; flanks "57555472-,57565231^"; structure "1-,2-"; splice_chain "57565228-,57565231-";
chr15	juncbase	jcn_only_AD	29213952	29287956	.	+	.	gene_id "jcn_only_AD.614"; transcript_id "jcn_only_AD.614"; gene_name "CUFF.1659"; flanks "29213952-,29287956^"; structure "1^,2^"; splice_chain "29213952^,29282999^";
chr15	juncbase	jcn_only_AD	29213921	29287956	.	+	.	gene_id "jcn_only_AD.615"; transcript_id "jcn_only_AD.615"; gene_name "CUFF.1659"; flanks "29213921-,29287956^"; structure "1^,2^"; splice_chain "29213921^,29282999^";
chr15	juncbase	jcn_only_AD	29253787	29287956	.	+	.	gene_id "jcn_only_AD.616"; transcript_id "jcn_only_AD.616"; gene_name "CUFF.1659"; flanks "29253787-,29287956^"; structure "1^,2^"; splice_chain "29253787^,29282999^";
chr15	juncbase	jcn_only_AA	75762340	75766030	.	-	.	gene_id "jcn_only_AA.550"; transcript_id "jcn_only_AA.550"; gene_name "CUFF.1732"; flanks "75762340-,75766030^"; structure "1-,2-"; splice_chain "75763171-,75762340-";
chr15	juncbase	intron_retention	33022995	33023117	.	+	.	gene_id "intron_retention.535"; transcript_id "intron_retention.535"; gene_name "CUFF.1664"; flanks "33022995-,33023117^"; structure "0,1^2-"; splice_chain ",33022995^33023117-";
chr15	juncbase	jcn_only_AD	74754439	74758377	.	+	.	gene_id "jcn_only_AD.617"; transcript_id "jcn_only_AD.617"; gene_name "CUFF.1729"; flanks "74754439-,74758377^"; structure "1^,2^"; splice_chain "74754368^,74754439^";
chr15	juncbase	jcn_only_AD	74754372	74758377	.	+	.	gene_id "jcn_only_AD.618"; transcript_id "jcn_only_AD.618"; gene_name "CUFF.1729"; flanks "74754372-,74758377^"; structure "1^,2^"; splice_chain "74754368^,74754372^";
chr15	juncbase	jcn_only_AA	44878048	44881450	.	-	.	gene_id "jcn_only_AA.551"; transcript_id "jcn_only_AA.551"; gene_name "CUFF.1681"; flanks "44878048-,44881450^"; structure "1-,2-"; splice_chain "44880836-,44878048-";
chr15	juncbase	jcn_only_AD	74754368	74758377	.	+	.	gene_id "jcn_only_AD.619"; transcript_id "jcn_only_AD.619"; gene_name "CUFF.1729"; flanks "74754368-,74758377^"; structure "1^,2^"; splice_chain "74754368^,74754439^";
chr15	juncbase	jcn_only_AD	74754372	74758377	.	+	.	gene_id "jcn_only_AD.620"; transcript_id "jcn_only_AD.620"; gene_name "CUFF.1729"; flanks "74754372-,74758377^"; structure "1^,2^"; splice_chain "74754372^,74754439^";
chr15	juncbase	cassette	57213296	57383987	.	+	.	gene_id "cassette.344"; transcript_id "cassette.344"; gene_name "CUFF.1704"; flanks "57213296-,57383987^"; structure "0,1-2^"; splice_chain ",57355948-57356021^";
chr15	juncbase	jcn_only_AA	57211104	57212100	.	+	.	gene_id "jcn_only_AA.552"; transcript_id "jcn_only_AA.552"; gene_name "CUFF.1704"; flanks "57211104-,57212100^"; structure "1-,2-"; splice_chain "57212090-,57212100-";
chr15	juncbase	jcn_only_AA	45470504	45492925	.	-	.	gene_id "jcn_only_AA.553"; transcript_id "jcn_only_AA.553"; gene_name "CUFF.1683"; flanks "45470504-,45492925^"; structure "1-,2-"; splice_chain "45491298-,45470504-";
chr15	juncbase	jcn_only_AA	45491318	45492925	.	-	.	gene_id "jcn_only_AA.554"; transcript_id "jcn_only_AA.554"; gene_name "CUFF.1683"; flanks "45491318-,45492925^"; structure "1-,2-"; splice_chain "45491318-,45491298-";
chr15	juncbase	cassette	83698888	83687605	.	-	.	gene_id "cassette.345"; transcript_id "cassette.345"; gene_name "CUFF.1744"; flanks "83698888-,83687605^"; structure "0,1-2^"; splice_chain ",83689514-83689427^";
chr15	juncbase	jcn_only_AA	44892830	44898223	.	-	.	gene_id "jcn_only_AA.555"; transcript_id "jcn_only_AA.555"; gene_name "CUFF.1681"; flanks "44892830-,44898223^"; structure "1-,2-"; splice_chain "44896395-,44892830-";
chr15	juncbase	jcn_only_AD	40558696	40564425	.	+	.	gene_id "jcn_only_AD.621"; transcript_id "jcn_only_AD.621"; gene_name "CUFF.1665"; flanks "40558696-,40564425^"; structure "1^,2^"; splice_chain "40558696^,40559198^";
chr15	juncbase	jcn_only_AA	57574796	57578355	.	+	.	gene_id "jcn_only_AA.556"; transcript_id "jcn_only_AA.556"; gene_name "CUFF.1704"; flanks "57574796-,57578355^"; structure "1-,2-"; splice_chain "57578355-,57583027-";
chr15	juncbase	jcn_only_AA	57574796	57591424	.	+	.	gene_id "jcn_only_AA.557"; transcript_id "jcn_only_AA.557"; gene_name "CUFF.1704"; flanks "57574796-,57591424^"; structure "1-,2-"; splice_chain "57583027-,57591424-";
chr15	juncbase	intron_retention	74753759	74754224	.	+	.	gene_id "intron_retention.536"; transcript_id "intron_retention.536"; gene_name "CUFF.1729"; flanks "74753759-,74754224^"; structure "0,1^2-"; splice_chain ",74753759^74754224-";
chr15	juncbase	jcn_only_AA	84873727	84898604	.	-	.	gene_id "jcn_only_AA.558"; transcript_id "jcn_only_AA.558"; gene_name ""; flanks "84873727-,84898604^"; structure "1-,2-"; splice_chain "84874071-,84873727-";
chr15	juncbase	jcn_only_AA	40756746	40757543	.	+	.	gene_id "jcn_only_AA.559"; transcript_id "jcn_only_AA.559"; gene_name ""; flanks "40756746-,40757543^"; structure "1-,2-"; splice_chain "40757534-,40757543-";
chr15	juncbase	cassette	66789980	66786890	.	-	.	gene_id "cassette.346"; transcript_id "cassette.346"; gene_name "CUFF.1723"; flanks "66789980-,66786890^"; structure "0,1-2^"; splice_chain ",66787757-66787241^";
chr15	juncbase	cassette	66789828	66786890	.	-	.	gene_id "cassette.347"; transcript_id "cassette.347"; gene_name "CUFF.1723"; flanks "66789828-,66786890^"; structure "0,1-2^"; splice_chain ",66787757-66787241^";
chr15	juncbase	alternative_donor	77713079	77750746	.	+	.	gene_id "alternative_donor.501"; transcript_id "alternative_donor.501"; gene_name "CUFF.1735"; flanks "77713079-,77750746^"; structure "1^,2^"; splice_chain "77713079^,77740153^";
chr15	juncbase	alternative_donor	77713346	77750746	.	+	.	gene_id "alternative_donor.502"; transcript_id "alternative_donor.502"; gene_name "CUFF.1735"; flanks "77713346-,77750746^"; structure "1^,2^"; splice_chain "77713346^,77740153^";
chr15	juncbase	alternative_donor	77750626	77750746	.	+	.	gene_id "alternative_donor.503"; transcript_id "alternative_donor.503"; gene_name "CUFF.1735"; flanks "77750626-,77750746^"; structure "1^,2^"; splice_chain "77740153^,77750626^";
chr15	juncbase	alternative_donor	77713436	77750746	.	+	.	gene_id "alternative_donor.504"; transcript_id "alternative_donor.504"; gene_name "CUFF.1735"; flanks "77713436-,77750746^"; structure "1^,2^"; splice_chain "77713436^,77740153^";
chr15	juncbase	jcn_only_AD	29282999	29287956	.	+	.	gene_id "jcn_only_AD.622"; transcript_id "jcn_only_AD.622"; gene_name "CUFF.1659"; flanks "29282999-,29287956^"; structure "1^,2^"; splice_chain "29213921^,29282999^";
chr15	juncbase	jcn_only_AD	29213952	29287956	.	+	.	gene_id "jcn_only_AD.623"; transcript_id "jcn_only_AD.623"; gene_name "CUFF.1659"; flanks "29213952-,29287956^"; structure "1^,2^"; splice_chain "29213921^,29213952^";
chr15	juncbase	jcn_only_AD	29253787	29287956	.	+	.	gene_id "jcn_only_AD.624"; transcript_id "jcn_only_AD.624"; gene_name "CUFF.1659"; flanks "29253787-,29287956^"; structure "1^,2^"; splice_chain "29213921^,29253787^";
chr15	juncbase	alternative_donor	24811359	24811803	.	+	.	gene_id "alternative_donor.505"; transcript_id "alternative_donor.505"; gene_name "CUFF.1652"; flanks "24811359-,24811803^"; structure "1^,2^"; splice_chain "24780953^,24811359^";
chr15	juncbase	alternative_donor	24803468	24811803	.	+	.	gene_id "alternative_donor.506"; transcript_id "alternative_donor.506"; gene_name "CUFF.1652"; flanks "24803468-,24811803^"; structure "1^,2^"; splice_chain "24780953^,24803468^";
chr15	juncbase	jcn_only_AD	84898604	84873727	.	-	.	gene_id "jcn_only_AD.625"; transcript_id "jcn_only_AD.625"; gene_name ""; flanks "84898604-,84873727^"; structure "1^,2^"; splice_chain "84898604^,84873983^";
chr15	juncbase	jcn_only_AD	24811359	24811803	.	+	.	gene_id "jcn_only_AD.626"; transcript_id "jcn_only_AD.626"; gene_name "CUFF.1652"; flanks "24811359-,24811803^"; structure "1^,2^"; splice_chain "24803468^,24811359^";
chr15	juncbase	jcn_only_AD	24780953	24811803	.	+	.	gene_id "jcn_only_AD.627"; transcript_id "jcn_only_AD.627"; gene_name "CUFF.1652"; flanks "24780953-,24811803^"; structure "1^,2^"; splice_chain "24780953^,24803468^";
chr15	juncbase	jcn_only_AD	44898223	44892830	.	-	.	gene_id "jcn_only_AD.628"; transcript_id "jcn_only_AD.628"; gene_name "CUFF.1681"; flanks "44898223-,44892830^"; structure "1^,2^"; splice_chain "44898223^,44896303^";
chr15	juncbase	jcn_only_AD	77713079	77750746	.	+	.	gene_id "jcn_only_AD.629"; transcript_id "jcn_only_AD.629"; gene_name "CUFF.1735"; flanks "77713079-,77750746^"; structure "1^,2^"; splice_chain "77713079^,77713346^";
chr15	juncbase	jcn_only_AD	77740153	77750746	.	+	.	gene_id "jcn_only_AD.630"; transcript_id "jcn_only_AD.630"; gene_name "CUFF.1735"; flanks "77740153-,77750746^"; structure "1^,2^"; splice_chain "77713346^,77740153^";
chr15	juncbase	jcn_only_AD	77750626	77750746	.	+	.	gene_id "jcn_only_AD.631"; transcript_id "jcn_only_AD.631"; gene_name "CUFF.1735"; flanks "77750626-,77750746^"; structure "1^,2^"; splice_chain "77713346^,77750626^";
chr15	juncbase	jcn_only_AD	77713436	77750746	.	+	.	gene_id "jcn_only_AD.632"; transcript_id "jcn_only_AD.632"; gene_name "CUFF.1735"; flanks "77713436-,77750746^"; structure "1^,2^"; splice_chain "77713346^,77713436^";
chr15	juncbase	intron_retention	64444941	64445444	.	+	.	gene_id "intron_retention.537"; transcript_id "intron_retention.537"; gene_name "CUFF.1720"; flanks "64444941-,64445444^"; structure "0,1^2-"; splice_chain ",64444941^64445444-";
chr15	juncbase	alternative_donor	97327060	97327383	.	+	.	gene_id "alternative_donor.507"; transcript_id "alternative_donor.507"; gene_name "CUFF.1761"; flanks "97327060-,97327383^"; structure "1^,2^"; splice_chain "97326819^,97327060^";
chr15	juncbase	alternative_donor	97326974	97327383	.	+	.	gene_id "alternative_donor.508"; transcript_id "alternative_donor.508"; gene_name "CUFF.1761"; flanks "97326974-,97327383^"; structure "1^,2^"; splice_chain "97326819^,97326974^";
chr15	juncbase	cassette	47687758	47672792	.	-	.	gene_id "cassette.348"; transcript_id "cassette.348"; gene_name "CUFF.1686"; flanks "47687758-,47672792^"; structure "0,1-2^"; splice_chain ",47685682-47685519^";
chr15	juncbase	cassette	99548658	99514387	.	-	.	gene_id "cassette.349"; transcript_id "cassette.349"; gene_name "CUFF.1762"; flanks "99548658-,99514387^"; structure "0,1-2^"; splice_chain ",99544508-99544416^";
chr15	juncbase	jcn_only_AA	45470504	45492925	.	-	.	gene_id "jcn_only_AA.560"; transcript_id "jcn_only_AA.560"; gene_name "CUFF.1683"; flanks "45470504-,45492925^"; structure "1-,2-"; splice_chain "45491318-,45470504-";
chr15	juncbase	jcn_only_AA	45491298	45492925	.	-	.	gene_id "jcn_only_AA.561"; transcript_id "jcn_only_AA.561"; gene_name "CUFF.1683"; flanks "45491298-,45492925^"; structure "1-,2-"; splice_chain "45491318-,45491298-";
chr15	juncbase	intron_retention	64446201	64446586	.	+	.	gene_id "intron_retention.538"; transcript_id "intron_retention.538"; gene_name "CUFF.1720"; flanks "64446201-,64446586^"; structure "0,1^2-"; splice_chain ",64446201^64446586-";
chr15	juncbase	jcn_only_AA	83358205	83378346	.	-	.	gene_id "jcn_only_AA.562"; transcript_id "jcn_only_AA.562"; gene_name "CUFF.1743"; flanks "83358205-,83378346^"; structure "1-,2-"; splice_chain "83358686-,83358205-";
chr15	juncbase	alternative_donor	55700984	55710421	.	+	.	gene_id "alternative_donor.509"; transcript_id "alternative_donor.509"; gene_name "CUFF.1698"; flanks "55700984-,55710421^"; structure "1^,2^"; splice_chain "55700984^,55709957^";
chr15	juncbase	alternative_acceptor	44878048	44881450	.	-	.	gene_id "alternative_acceptor.415"; transcript_id "alternative_acceptor.415"; gene_name "CUFF.1681"; flanks "44878048-,44881450^"; structure "1-,2-"; splice_chain "44880836-,44878048-";
chr15	juncbase	jcn_only_AD	66786753	66783055	.	-	.	gene_id "jcn_only_AD.633"; transcript_id "jcn_only_AD.633"; gene_name "CUFF.1723"; flanks "66786753-,66783055^"; structure "1^,2^"; splice_chain "66786753^,66786615^";
chr15	juncbase	alternative_acceptor	45464200	45464345	.	-	.	gene_id "alternative_acceptor.416"; transcript_id "alternative_acceptor.416"; gene_name "CUFF.1683"; flanks "45464200-,45464345^"; structure "1-,2-"; splice_chain "45464276-,45464200-";
chr15	juncbase	jcn_only_AD	64445538	64445851	.	+	.	gene_id "jcn_only_AD.634"; transcript_id "jcn_only_AD.634"; gene_name "CUFF.1720"; flanks "64445538-,64445851^"; structure "1^,2^"; splice_chain "64445538^,64445585^";
chr15	juncbase	alternative_donor	29213952	29287956	.	+	.	gene_id "alternative_donor.510"; transcript_id "alternative_donor.510"; gene_name "CUFF.1659"; flanks "29213952-,29287956^"; structure "1^,2^"; splice_chain "29213952^,29282999^";
chr15	juncbase	alternative_donor	29213921	29287956	.	+	.	gene_id "alternative_donor.511"; transcript_id "alternative_donor.511"; gene_name "CUFF.1659"; flanks "29213921-,29287956^"; structure "1^,2^"; splice_chain "29213921^,29282999^";
chr15	juncbase	alternative_donor	29253787	29287956	.	+	.	gene_id "alternative_donor.512"; transcript_id "alternative_donor.512"; gene_name "CUFF.1659"; flanks "29253787-,29287956^"; structure "1^,2^"; splice_chain "29253787^,29282999^";
chr15	juncbase	alternative_donor	50830906	50822126	.	-	.	gene_id "alternative_donor.513"; transcript_id "alternative_donor.513"; gene_name "CUFF.1687"; flanks "50830906-,50822126^"; structure "1^,2^"; splice_chain "50830906^,50824209^";
chr15	juncbase	alternative_acceptor	90378745	90380847	.	-	.	gene_id "alternative_acceptor.417"; transcript_id "alternative_acceptor.417"; gene_name "CUFF.1757"; flanks "90378745-,90380847^"; structure "1-,2-"; splice_chain "90378875-,90378745-";
chr15	juncbase	alternative_acceptor	83357250	83357488	.	-	.	gene_id "alternative_acceptor.418"; transcript_id "alternative_acceptor.418"; gene_name "CUFF.1743"; flanks "83357250-,83357488^"; structure "1-,2-"; splice_chain "83357250-,83350332-";
chr15	juncbase	alternative_acceptor	83355771	83357488	.	-	.	gene_id "alternative_acceptor.419"; transcript_id "alternative_acceptor.419"; gene_name "CUFF.1743"; flanks "83355771-,83357488^"; structure "1-,2-"; splice_chain "83355771-,83350332-";
chr15	juncbase	cassette	67752030	67713836	.	-	.	gene_id "cassette.350"; transcript_id "cassette.350"; gene_name "CUFF.1727"; flanks "67752030-,67713836^"; structure "0,1-2^"; splice_chain ",67722738-67722659^";
chr15	juncbase	alternative_donor	90391825	90380954	.	-	.	gene_id "alternative_donor.514"; transcript_id "alternative_donor.514"; gene_name "CUFF.1737,CUFF.1757"; flanks "90391825-,90380954^"; structure "1^,2^"; splice_chain "90391825^,90381261^";
chr15	juncbase	alternative_donor	90395593	90380954	.	-	.	gene_id "alternative_donor.515"; transcript_id "alternative_donor.515"; gene_name "CUFF.1737,CUFF.1757"; flanks "90395593-,90380954^"; structure "1^,2^"; splice_chain "90395593^,90381261^";
chr15	juncbase	alternative_donor	90414707	90380954	.	-	.	gene_id "alternative_donor.516"; transcript_id "alternative_donor.516"; gene_name "CUFF.1737,CUFF.1757"; flanks "90414707-,90380954^"; structure "1^,2^"; splice_chain "90414707^,90381261^";
chr15	juncbase	alternative_donor	97326819	97327383	.	+	.	gene_id "alternative_donor.517"; transcript_id "alternative_donor.517"; gene_name "CUFF.1761"; flanks "97326819-,97327383^"; structure "1^,2^"; splice_chain "97326819^,97326974^";
chr15	juncbase	alternative_donor	97327060	97327383	.	+	.	gene_id "alternative_donor.518"; transcript_id "alternative_donor.518"; gene_name "CUFF.1761"; flanks "97327060-,97327383^"; structure "1^,2^"; splice_chain "97326974^,97327060^";
chr15	juncbase	jcn_only_AD	77713079	77750746	.	+	.	gene_id "jcn_only_AD.635"; transcript_id "jcn_only_AD.635"; gene_name "CUFF.1735"; flanks "77713079-,77750746^"; structure "1^,2^"; splice_chain "77713079^,77740153^";
chr15	juncbase	jcn_only_AD	77713346	77750746	.	+	.	gene_id "jcn_only_AD.636"; transcript_id "jcn_only_AD.636"; gene_name "CUFF.1735"; flanks "77713346-,77750746^"; structure "1^,2^"; splice_chain "77713346^,77740153^";
chr15	juncbase	jcn_only_AD	77750626	77750746	.	+	.	gene_id "jcn_only_AD.637"; transcript_id "jcn_only_AD.637"; gene_name "CUFF.1735"; flanks "77750626-,77750746^"; structure "1^,2^"; splice_chain "77740153^,77750626^";
chr15	juncbase	jcn_only_AD	77713436	77750746	.	+	.	gene_id "jcn_only_AD.638"; transcript_id "jcn_only_AD.638"; gene_name "CUFF.1735"; flanks "77713436-,77750746^"; structure "1^,2^"; splice_chain "77713436^,77740153^";
chr15	juncbase	jcn_only_AA	83331985	83332312	.	-	.	gene_id "jcn_only_AA.563"; transcript_id "jcn_only_AA.563"; gene_name "CUFF.1743"; flanks "83331985-,83332312^"; structure "1-,2-"; splice_chain "83332047-,83331985-";
chr15	juncbase	jcn_only_AD	57384089	57458600	.	+	.	gene_id "jcn_only_AD.639"; transcript_id "jcn_only_AD.639"; gene_name "CUFF.1704"; flanks "57384089-,57458600^"; structure "1^,2^"; splice_chain "57384089^,57401515^";
chr15	juncbase	jcn_only_AD	57426698	57458600	.	+	.	gene_id "jcn_only_AD.640"; transcript_id "jcn_only_AD.640"; gene_name "CUFF.1704"; flanks "57426698-,57458600^"; structure "1^,2^"; splice_chain "57401515^,57426698^";
chr15	juncbase	jcn_only_AD	57422170	57458600	.	+	.	gene_id "jcn_only_AD.641"; transcript_id "jcn_only_AD.641"; gene_name "CUFF.1704"; flanks "57422170-,57458600^"; structure "1^,2^"; splice_chain "57401515^,57422170^";
chr15	juncbase	alternative_acceptor	57555472	57565231	.	+	.	gene_id "alternative_acceptor.420"; transcript_id "alternative_acceptor.420"; gene_name ""; flanks "57555472-,57565231^"; structure "1-,2-"; splice_chain "57565228-,57565231-";
chr15	juncbase	intron_retention	44858415	44858207	.	-	.	gene_id "intron_retention.539"; transcript_id "intron_retention.539"; gene_name "CUFF.1681"; flanks "44858415-,44858207^"; structure "0,1^2-"; splice_chain ",44858415^44858207-";
chr15	juncbase	jcn_only_AD	55700984	55710421	.	+	.	gene_id "jcn_only_AD.642"; transcript_id "jcn_only_AD.642"; gene_name "CUFF.1698"; flanks "55700984-,55710421^"; structure "1^,2^"; splice_chain "55700984^,55709957^";
chr15	juncbase	intron_retention	89878600	89878880	.	+	.	gene_id "intron_retention.540"; transcript_id "intron_retention.540"; gene_name "CUFF.1754"; flanks "89878600-,89878880^"; structure "0,1^2-"; splice_chain ",89878600^89878880-";
chr15	juncbase	alternative_donor	29282999	29287956	.	+	.	gene_id "alternative_donor.519"; transcript_id "alternative_donor.519"; gene_name "CUFF.1659"; flanks "29282999-,29287956^"; structure "1^,2^"; splice_chain "29213921^,29282999^";
chr15	juncbase	alternative_donor	29213952	29287956	.	+	.	gene_id "alternative_donor.520"; transcript_id "alternative_donor.520"; gene_name "CUFF.1659"; flanks "29213952-,29287956^"; structure "1^,2^"; splice_chain "29213921^,29213952^";
chr15	juncbase	alternative_donor	29253787	29287956	.	+	.	gene_id "alternative_donor.521"; transcript_id "alternative_donor.521"; gene_name "CUFF.1659"; flanks "29253787-,29287956^"; structure "1^,2^"; splice_chain "29213921^,29253787^";
chr15	juncbase	alternative_donor	44881450	44878048	.	-	.	gene_id "alternative_donor.522"; transcript_id "alternative_donor.522"; gene_name "CUFF.1681,CUFF.1725"; flanks "44881450-,44878048^"; structure "1^,2^"; splice_chain "44881450^,44880765^";
chr15	juncbase	alternative_acceptor	77713346	77750746	.	+	.	gene_id "alternative_acceptor.421"; transcript_id "alternative_acceptor.421"; gene_name "CUFF.1735,CUFF.1760"; flanks "77713346-,77750746^"; structure "1-,2-"; splice_chain "77740061-,77750746-";
chr15	juncbase	jcn_only_AA	24820150	24832714	.	+	.	gene_id "jcn_only_AA.564"; transcript_id "jcn_only_AA.564"; gene_name "CUFF.1652"; flanks "24820150-,24832714^"; structure "1-,2-"; splice_chain "24825374-,24832714-";
chr15	juncbase	jcn_only_AD	78537611	78501591	.	-	.	gene_id "jcn_only_AD.643"; transcript_id "jcn_only_AD.643"; gene_name ""; flanks "78537611-,78501591^"; structure "1^,2^"; splice_chain "78537611^,78504891^";
chr15	juncbase	jcn_only_AD	90437113	90432372	.	-	.	gene_id "jcn_only_AD.644"; transcript_id "jcn_only_AD.644"; gene_name "CUFF.1743,CUFF.1757"; flanks "90437113-,90432372^"; structure "1^,2^"; splice_chain "90437113^,90437109^";
chr15	juncbase	cassette	94408877	94421263	.	+	.	gene_id "cassette.351"; transcript_id "cassette.351"; gene_name "CUFF.1759"; flanks "94408877-,94421263^"; structure "0,1-2^"; splice_chain ",94412920-94413062^";
chr15	juncbase	intron_retention	97326974	97327383	.	+	.	gene_id "intron_retention.541"; transcript_id "intron_retention.541"; gene_name "CUFF.1761"; flanks "97326974-,97327383^"; structure "0,1^2-"; splice_chain ",97326974^97327383-";
chr15	juncbase	jcn_only_AA	83333695	83334209	.	-	.	gene_id "jcn_only_AA.565"; transcript_id "jcn_only_AA.565"; gene_name "CUFF.1743"; flanks "83333695-,83334209^"; structure "1-,2-"; splice_chain "83334055-,83333695-";
chr15	juncbase	alternative_acceptor	84873727	84898604	.	-	.	gene_id "alternative_acceptor.422"; transcript_id "alternative_acceptor.422"; gene_name ""; flanks "84873727-,84898604^"; structure "1-,2-"; splice_chain "84874071-,84873727-";
chr15	juncbase	jcn_only_AD	24820150	24832714	.	+	.	gene_id "jcn_only_AD.645"; transcript_id "jcn_only_AD.645"; gene_name "CUFF.1652"; flanks "24820150-,24832714^"; structure "1^,2^"; splice_chain "24820150^,24825477^";
chr15	juncbase	alternative_acceptor	78807449	78819722	.	+	.	gene_id "alternative_acceptor.423"; transcript_id "alternative_acceptor.423"; gene_name "CUFF.1739"; flanks "78807449-,78819722^"; structure "1-,2-"; splice_chain "78810930-,78819722-";
chr15	juncbase	alternative_donor	24819891	24820054	.	+	.	gene_id "alternative_donor.523"; transcript_id "alternative_donor.523"; gene_name "CUFF.1652"; flanks "24819891-,24820054^"; structure "1^,2^"; splice_chain "24819891^,24819960^";
chr15	juncbase	jcn_only_AD	74754439	74758377	.	+	.	gene_id "jcn_only_AD.646"; transcript_id "jcn_only_AD.646"; gene_name "CUFF.1729"; flanks "74754439-,74758377^"; structure "1^,2^"; splice_chain "74754372^,74754439^";
chr15	juncbase	jcn_only_AD	74754368	74758377	.	+	.	gene_id "jcn_only_AD.647"; transcript_id "jcn_only_AD.647"; gene_name "CUFF.1729"; flanks "74754368-,74758377^"; structure "1^,2^"; splice_chain "74754368^,74754372^";
chr15	juncbase	jcn_only_AA	83357250	83357488	.	-	.	gene_id "jcn_only_AA.566"; transcript_id "jcn_only_AA.566"; gene_name "CUFF.1743"; flanks "83357250-,83357488^"; structure "1-,2-"; splice_chain "83357250-,83355771-";
chr15	juncbase	jcn_only_AA	83350332	83357488	.	-	.	gene_id "jcn_only_AA.567"; transcript_id "jcn_only_AA.567"; gene_name "CUFF.1743"; flanks "83350332-,83357488^"; structure "1-,2-"; splice_chain "83355771-,83350332-";
chr15	juncbase	jcn_only_AD	83366609	83358205	.	-	.	gene_id "jcn_only_AD.648"; transcript_id "jcn_only_AD.648"; gene_name ""; flanks "83366609-,83358205^"; structure "1^,2^"; splice_chain "83378346^,83366609^";
chr15	juncbase	jcn_only_AD	83358515	83358205	.	-	.	gene_id "jcn_only_AD.649"; transcript_id "jcn_only_AD.649"; gene_name ""; flanks "83358515-,83358205^"; structure "1^,2^"; splice_chain "83378346^,83358515^";
chr15	juncbase	jcn_only_AD	83377524	83358205	.	-	.	gene_id "jcn_only_AD.650"; transcript_id "jcn_only_AD.650"; gene_name ""; flanks "83377524-,83358205^"; structure "1^,2^"; splice_chain "83378346^,83377524^";
chr15	juncbase	alternative_donor	57565460	57574643	.	+	.	gene_id "alternative_donor.524"; transcript_id "alternative_donor.524"; gene_name "CUFF.1704"; flanks "57565460-,57574643^"; structure "1^,2^"; splice_chain "57565460^,57573990^";
chr15	juncbase	jcn_only_AD	44912388	44907764	.	-	.	gene_id "jcn_only_AD.651"; transcript_id "jcn_only_AD.651"; gene_name "CUFF.1681"; flanks "44912388-,44907764^"; structure "1^,2^"; splice_chain "44912388^,44912323^";
chr15	juncbase	cassette	29385423	29390693	.	+	.	gene_id "cassette.352"; transcript_id "cassette.352"; gene_name "CUFF.1659"; flanks "29385423-,29390693^"; structure "0,1-2^"; splice_chain ",29386481-29386516^";
chr15	juncbase	cassette	64673157	64658274	.	-	.	gene_id "cassette.353"; transcript_id "cassette.353"; gene_name "CUFF.1721"; flanks "64673157-,64658274^"; structure "0,1-2^"; splice_chain ",64669104-64668942^";
chr15	juncbase	alternative_acceptor	40558696	40564425	.	+	.	gene_id "alternative_acceptor.424"; transcript_id "alternative_acceptor.424"; gene_name "CUFF.1665"; flanks "40558696-,40564425^"; structure "1-,2-"; splice_chain "40559124-,40564425-";
chr15	juncbase	intron_retention	64445538	64445851	.	+	.	gene_id "intron_retention.542"; transcript_id "intron_retention.542"; gene_name "CUFF.1720"; flanks "64445538-,64445851^"; structure "0,1^2-"; splice_chain ",64445538^64445851-";
chr15	juncbase	jcn_only_AD	77713079	77750746	.	+	.	gene_id "jcn_only_AD.652"; transcript_id "jcn_only_AD.652"; gene_name "CUFF.1735"; flanks "77713079-,77750746^"; structure "1^,2^"; splice_chain "77713079^,77750626^";
chr15	juncbase	jcn_only_AD	77740153	77750746	.	+	.	gene_id "jcn_only_AD.653"; transcript_id "jcn_only_AD.653"; gene_name "CUFF.1735"; flanks "77740153-,77750746^"; structure "1^,2^"; splice_chain "77740153^,77750626^";
chr15	juncbase	jcn_only_AD	77713346	77750746	.	+	.	gene_id "jcn_only_AD.654"; transcript_id "jcn_only_AD.654"; gene_name "CUFF.1735"; flanks "77713346-,77750746^"; structure "1^,2^"; splice_chain "77713346^,77750626^";
chr15	juncbase	jcn_only_AD	77713436	77750746	.	+	.	gene_id "jcn_only_AD.655"; transcript_id "jcn_only_AD.655"; gene_name "CUFF.1735"; flanks "77713436-,77750746^"; structure "1^,2^"; splice_chain "77713436^,77750626^";
chr15	juncbase	alternative_acceptor	57574796	57583027	.	+	.	gene_id "alternative_acceptor.425"; transcript_id "alternative_acceptor.425"; gene_name ""; flanks "57574796-,57583027^"; structure "1-,2-"; splice_chain "57578355-,57583027-";
chr15	juncbase	alternative_acceptor	57574796	57591424	.	+	.	gene_id "alternative_acceptor.426"; transcript_id "alternative_acceptor.426"; gene_name ""; flanks "57574796-,57591424^"; structure "1-,2-"; splice_chain "57578355-,57591424-";
chr15	juncbase	jcn_only_AA	94449518	94527015	.	+	.	gene_id "jcn_only_AA.568"; transcript_id "jcn_only_AA.568"; gene_name "CUFF.1760"; flanks "94449518-,94527015^"; structure "1-,2-"; splice_chain "94512823-,94527015-";
chr15	juncbase	jcn_only_AD	66787668	66786890	.	-	.	gene_id "jcn_only_AD.656"; transcript_id "jcn_only_AD.656"; gene_name "CUFF.1723"; flanks "66787668-,66786890^"; structure "1^,2^"; splice_chain "66787668^,66787241^";
chr15	juncbase	alternative_donor	91290720	91292597	.	+	.	gene_id "alternative_donor.525"; transcript_id "alternative_donor.525"; gene_name "CUFF.1758"; flanks "91290720-,91292597^"; structure "1^,2^"; splice_chain "91290720^,91290891^";
chr15	juncbase	alternative_donor	55789910	55783454	.	-	.	gene_id "alternative_donor.526"; transcript_id "alternative_donor.526"; gene_name "CUFF.1699"; flanks "55789910-,55783454^"; structure "1^,2^"; splice_chain "55789910^,55787326^";
chr15	juncbase	alternative_donor	64445538	64445851	.	+	.	gene_id "alternative_donor.527"; transcript_id "alternative_donor.527"; gene_name "CUFF.1720"; flanks "64445538-,64445851^"; structure "1^,2^"; splice_chain "64445538^,64445585^";
chr15	juncbase	intron_retention	77471132	77470365	.	-	.	gene_id "intron_retention.543"; transcript_id "intron_retention.543"; gene_name ""; flanks "77471132-,77470365^"; structure "0,1^2-"; splice_chain ",77471132^77470365-";
chr15	juncbase	cassette	40545490	40556982	.	+	.	gene_id "cassette.354"; transcript_id "cassette.354"; gene_name "CUFF.1665"; flanks "40545490-,40556982^"; structure "0,1-2^"; splice_chain ",40556000-40556120^";
chr15	juncbase	alternative_donor	77740153	77750746	.	+	.	gene_id "alternative_donor.528"; transcript_id "alternative_donor.528"; gene_name "CUFF.1735"; flanks "77740153-,77750746^"; structure "1^,2^"; splice_chain "77713079^,77740153^";
chr15	juncbase	alternative_donor	77713346	77750746	.	+	.	gene_id "alternative_donor.529"; transcript_id "alternative_donor.529"; gene_name "CUFF.1735"; flanks "77713346-,77750746^"; structure "1^,2^"; splice_chain "77713079^,77713346^";
chr15	juncbase	alternative_donor	77750626	77750746	.	+	.	gene_id "alternative_donor.530"; transcript_id "alternative_donor.530"; gene_name "CUFF.1735"; flanks "77750626-,77750746^"; structure "1^,2^"; splice_chain "77713079^,77750626^";
chr15	juncbase	alternative_donor	77713436	77750746	.	+	.	gene_id "alternative_donor.531"; transcript_id "alternative_donor.531"; gene_name "CUFF.1735"; flanks "77713436-,77750746^"; structure "1^,2^"; splice_chain "77713079^,77713436^";
chr15	juncbase	alternative_acceptor	83357250	83357488	.	-	.	gene_id "alternative_acceptor.427"; transcript_id "alternative_acceptor.427"; gene_name "CUFF.1743"; flanks "83357250-,83357488^"; structure "1-,2-"; splice_chain "83357250-,83355771-";
chr15	juncbase	alternative_acceptor	83350332	83357488	.	-	.	gene_id "alternative_acceptor.428"; transcript_id "alternative_acceptor.428"; gene_name "CUFF.1743"; flanks "83350332-,83357488^"; structure "1-,2-"; splice_chain "83355771-,83350332-";
chr15	juncbase	jcn_only_AD	57535748	57543548	.	+	.	gene_id "jcn_only_AD.657"; transcript_id "jcn_only_AD.657"; gene_name "CUFF.1704"; flanks "57535748-,57543548^"; structure "1^,2^"; splice_chain "57535748^,57540279^";
chr15	juncbase	intron_retention	64446951	64447590	.	+	.	gene_id "intron_retention.544"; transcript_id "intron_retention.544"; gene_name "CUFF.1720"; flanks "64446951-,64447590^"; structure "0,1^2-"; splice_chain ",64446951^64447590-";
chr15	juncbase	intron_retention	83357910	83350332	.	-	.	gene_id "intron_retention.545"; transcript_id "intron_retention.545"; gene_name ""; flanks "83357910-,83350332^"; structure "0,1^2-"; splice_chain ",83357910^83350332-";
chr15	juncbase	jcn_only_AD	24793617	24811236	.	+	.	gene_id "jcn_only_AD.658"; transcript_id "jcn_only_AD.658"; gene_name ""; flanks "24793617-,24811236^"; structure "1^,2^"; splice_chain "24793617^,24803468^";
chr15	juncbase	intron_retention	64444049	64444442	.	+	.	gene_id "intron_retention.546"; transcript_id "intron_retention.546"; gene_name "CUFF.1720"; flanks "64444049-,64444442^"; structure "0,1^2-"; splice_chain ",64444049^64444442-";
chr15	juncbase	jcn_only_AD	44881450	44878048	.	-	.	gene_id "jcn_only_AD.659"; transcript_id "jcn_only_AD.659"; gene_name "CUFF.1681,CUFF.1725"; flanks "44881450-,44878048^"; structure "1^,2^"; splice_chain "44881450^,44880765^";
chr15	juncbase	alternative_donor	90395593	90380954	.	-	.	gene_id "alternative_donor.532"; transcript_id "alternative_donor.532"; gene_name "CUFF.1757"; flanks "90395593-,90380954^"; structure "1^,2^"; splice_chain "90395593^,90391825^";
chr15	juncbase	alternative_donor	90414707	90380954	.	-	.	gene_id "alternative_donor.533"; transcript_id "alternative_donor.533"; gene_name "CUFF.1757"; flanks "90414707-,90380954^"; structure "1^,2^"; splice_chain "90414707^,90391825^";
chr15	juncbase	alternative_donor	90381261	90380954	.	-	.	gene_id "alternative_donor.534"; transcript_id "alternative_donor.534"; gene_name "CUFF.1757"; flanks "90381261-,90380954^"; structure "1^,2^"; splice_chain "90391825^,90381261^";
chr15	juncbase	alternative_acceptor	75801368	75809600	.	-	.	gene_id "alternative_acceptor.429"; transcript_id "alternative_acceptor.429"; gene_name "CUFF.1732"; flanks "75801368-,75809600^"; structure "1-,2-"; splice_chain "75805779-,75801368-";
chr15	juncbase	jcn_only_AA	75772255	75782549	.	-	.	gene_id "jcn_only_AA.569"; transcript_id "jcn_only_AA.569"; gene_name "CUFF.1732"; flanks "75772255-,75782549^"; structure "1-,2-"; splice_chain "75780118-,75772255-";
chr15	juncbase	jcn_only_AD	78807449	78819722	.	+	.	gene_id "jcn_only_AD.660"; transcript_id "jcn_only_AD.660"; gene_name "CUFF.1739"; flanks "78807449-,78819722^"; structure "1^,2^"; splice_chain "78807449^,78811115^";
chr15	juncbase	intron_retention	83331446	83331004	.	-	.	gene_id "intron_retention.547"; transcript_id "intron_retention.547"; gene_name "CUFF.1743"; flanks "83331446-,83331004^"; structure "0,1^2-"; splice_chain ",83331446^83331004-";
chr15	juncbase	alternative_donor	29288009	29346048	.	+	.	gene_id "alternative_donor.535"; transcript_id "alternative_donor.535"; gene_name "CUFF.1659"; flanks "29288009-,29346048^"; structure "1^,2^"; splice_chain "29288009^,29336631^";
chr15	juncbase	jcn_only_AD	24819891	24820054	.	+	.	gene_id "jcn_only_AD.661"; transcript_id "jcn_only_AD.661"; gene_name "CUFF.1652"; flanks "24819891-,24820054^"; structure "1^,2^"; splice_chain "24819891^,24819960^";
chr15	juncbase	intron_retention	97327060	97327383	.	+	.	gene_id "intron_retention.548"; transcript_id "intron_retention.548"; gene_name "CUFF.1761"; flanks "97327060-,97327383^"; structure "0,1^2-"; splice_chain ",97327060^97327383-";
chr15	juncbase	intron_retention	40531336	40545379	.	+	.	gene_id "intron_retention.549"; transcript_id "intron_retention.549"; gene_name ""; flanks "40531336-,40545379^"; structure "0,1^2-"; splice_chain ",40531336^40545379-";
chr15	juncbase	cassette	83698888	83689514	.	-	.	gene_id "cassette.355"; transcript_id "cassette.355"; gene_name "CUFF.1744"; flanks "83698888-,83689514^"; structure "0,1-2^"; splice_chain ",83697480-83697368^";
chr15	juncbase	intron_retention	44876363	44876133	.	-	.	gene_id "intron_retention.550"; transcript_id "intron_retention.550"; gene_name ""; flanks "44876363-,44876133^"; structure "0,1^2-"; splice_chain ",44876363^44876133-";
chr15	juncbase	alternative_donor	24825477	24869115	.	+	.	gene_id "alternative_donor.536"; transcript_id "alternative_donor.536"; gene_name "CUFF.1652"; flanks "24825477-,24869115^"; structure "1^,2^"; splice_chain "24825477^,24832882^";
chr15	juncbase	alternative_acceptor	45470504	45492925	.	-	.	gene_id "alternative_acceptor.430"; transcript_id "alternative_acceptor.430"; gene_name "CUFF.1683"; flanks "45470504-,45492925^"; structure "1-,2-"; splice_chain "45491318-,45470504-";
chr15	juncbase	alternative_acceptor	45491298	45492925	.	-	.	gene_id "alternative_acceptor.431"; transcript_id "alternative_acceptor.431"; gene_name "CUFF.1683"; flanks "45491298-,45492925^"; structure "1-,2-"; splice_chain "45491318-,45491298-";
chr15	juncbase	intron_retention	77756729	77759525	.	+	.	gene_id "intron_retention.551"; transcript_id "intron_retention.551"; gene_name "CUFF.1735"; flanks "77756729-,77759525^"; structure "0,1^2-"; splice_chain ",77756729^77759525-";
chr15	juncbase	alternative_donor	63047892	63053880	.	+	.	gene_id "alternative_donor.537"; transcript_id "alternative_donor.537"; gene_name "CUFF.1717"; flanks "63047892-,63053880^"; structure "1^,2^"; splice_chain "63047892^,63050858^";
chr15	juncbase	jcn_only_AD	63128272	63131055	.	+	.	gene_id "jcn_only_AD.662"; transcript_id "jcn_only_AD.662"; gene_name "CUFF.1717"; flanks "63128272-,63131055^"; structure "1^,2^"; splice_chain "63128272^,63128317^";
chr15	juncbase	alternative_acceptor	24820150	24832714	.	+	.	gene_id "alternative_acceptor.432"; transcript_id "alternative_acceptor.432"; gene_name "CUFF.1652"; flanks "24820150-,24832714^"; structure "1-,2-"; splice_chain "24825374-,24832714-";
chr15	juncbase	jcn_only_AA	40752095	40754114	.	+	.	gene_id "jcn_only_AA.570"; transcript_id "jcn_only_AA.570"; gene_name "CUFF.1666,CUFF.1685"; flanks "40752095-,40754114^"; structure "1-,2-"; splice_chain "40754111-,40754114-";
chr15	juncbase	jcn_only_AD	83366609	83358205	.	-	.	gene_id "jcn_only_AD.663"; transcript_id "jcn_only_AD.663"; gene_name "CUFF.1743"; flanks "83366609-,83358205^"; structure "1^,2^"; splice_chain "83366609^,83358515^";
chr15	juncbase	jcn_only_AD	83378346	83358205	.	-	.	gene_id "jcn_only_AD.664"; transcript_id "jcn_only_AD.664"; gene_name "CUFF.1743"; flanks "83378346-,83358205^"; structure "1^,2^"; splice_chain "83378346^,83358515^";
chr15	juncbase	jcn_only_AD	83377524	83358205	.	-	.	gene_id "jcn_only_AD.665"; transcript_id "jcn_only_AD.665"; gene_name "CUFF.1743"; flanks "83377524-,83358205^"; structure "1^,2^"; splice_chain "83377524^,83358515^";
chr15	juncbase	jcn_only_AD	83378346	83358205	.	-	.	gene_id "jcn_only_AD.666"; transcript_id "jcn_only_AD.666"; gene_name "CUFF.1743"; flanks "83378346-,83358205^"; structure "1^,2^"; splice_chain "83378346^,83366609^";
chr15	juncbase	jcn_only_AD	83358515	83358205	.	-	.	gene_id "jcn_only_AD.667"; transcript_id "jcn_only_AD.667"; gene_name "CUFF.1743"; flanks "83358515-,83358205^"; structure "1^,2^"; splice_chain "83366609^,83358515^";
chr15	juncbase	jcn_only_AD	83377524	83358205	.	-	.	gene_id "jcn_only_AD.668"; transcript_id "jcn_only_AD.668"; gene_name "CUFF.1743"; flanks "83377524-,83358205^"; structure "1^,2^"; splice_chain "83377524^,83366609^";
chr15	juncbase	cassette	57523455	57524910	.	+	.	gene_id "cassette.356"; transcript_id "cassette.356"; gene_name "CUFF.1704"; flanks "57523455-,57524910^"; structure "0,1-2^"; splice_chain ",57524489-57524628^";
chr15	juncbase	jcn_only_AD	40732164	40750650	.	+	.	gene_id "jcn_only_AD.669"; transcript_id "jcn_only_AD.669"; gene_name "CUFF.1666"; flanks "40732164-,40750650^"; structure "1^,2^"; splice_chain "40732164^,40733467^";
chr15	juncbase	jcn_only_AD	29347038	29367124	.	+	.	gene_id "jcn_only_AD.670"; transcript_id "jcn_only_AD.670"; gene_name "CUFF.1659"; flanks "29347038-,29367124^"; structure "1^,2^"; splice_chain "29347038^,29363302^";
chr15	juncbase	alternative_acceptor	24803468	24811803	.	+	.	gene_id "alternative_acceptor.433"; transcript_id "alternative_acceptor.433"; gene_name ""; flanks "24803468-,24811803^"; structure "1-,2-"; splice_chain "24811236-,24811803-";
chr15	juncbase	alternative_donor	83366609	83358205	.	-	.	gene_id "alternative_donor.538"; transcript_id "alternative_donor.538"; gene_name ""; flanks "83366609-,83358205^"; structure "1^,2^"; splice_chain "83378346^,83366609^";
chr15	juncbase	alternative_donor	83358515	83358205	.	-	.	gene_id "alternative_donor.539"; transcript_id "alternative_donor.539"; gene_name ""; flanks "83358515-,83358205^"; structure "1^,2^"; splice_chain "83378346^,83358515^";
chr15	juncbase	alternative_donor	83377524	83358205	.	-	.	gene_id "alternative_donor.540"; transcript_id "alternative_donor.540"; gene_name ""; flanks "83377524-,83358205^"; structure "1^,2^"; splice_chain "83378346^,83377524^";
chr15	juncbase	alternative_acceptor	55783454	55789910	.	-	.	gene_id "alternative_acceptor.434"; transcript_id "alternative_acceptor.434"; gene_name "CUFF.1699"; flanks "55783454-,55789910^"; structure "1-,2-"; splice_chain "55787400-,55783454-";
chr15	juncbase	alternative_acceptor	40752095	40754114	.	+	.	gene_id "alternative_acceptor.435"; transcript_id "alternative_acceptor.435"; gene_name "CUFF.1666,CUFF.1685"; flanks "40752095-,40754114^"; structure "1-,2-"; splice_chain "40754111-,40754114-";
chr15	juncbase	alternative_donor	44884529	44881612	.	-	.	gene_id "alternative_donor.541"; transcript_id "alternative_donor.541"; gene_name "CUFF.1681"; flanks "44884529-,44881612^"; structure "1^,2^"; splice_chain "44884529^,44882619^";
chr15	juncbase	intron_retention	33023005	33023129	.	+	.	gene_id "intron_retention.552"; transcript_id "intron_retention.552"; gene_name "CUFF.1664"; flanks "33023005-,33023129^"; structure "0,1^2-"; splice_chain ",33023005^33023129-";
chr15	juncbase	alternative_donor	78807449	78819722	.	+	.	gene_id "alternative_donor.542"; transcript_id "alternative_donor.542"; gene_name "CUFF.1739"; flanks "78807449-,78819722^"; structure "1^,2^"; splice_chain "78807449^,78811115^";
chr15	juncbase	jcn_only_AD	97327060	97327383	.	+	.	gene_id "jcn_only_AD.671"; transcript_id "jcn_only_AD.671"; gene_name "CUFF.1761"; flanks "97327060-,97327383^"; structure "1^,2^"; splice_chain "97326819^,97327060^";
chr15	juncbase	jcn_only_AD	97326974	97327383	.	+	.	gene_id "jcn_only_AD.672"; transcript_id "jcn_only_AD.672"; gene_name "CUFF.1761"; flanks "97326974-,97327383^"; structure "1^,2^"; splice_chain "97326819^,97326974^";
chr15	juncbase	jcn_only_AA	90378745	90380847	.	-	.	gene_id "jcn_only_AA.571"; transcript_id "jcn_only_AA.571"; gene_name "CUFF.1757"; flanks "90378745-,90380847^"; structure "1-,2-"; splice_chain "90378875-,90378745-";
chr15	juncbase	alternative_donor	83366609	83358205	.	-	.	gene_id "alternative_donor.543"; transcript_id "alternative_donor.543"; gene_name "CUFF.1743"; flanks "83366609-,83358205^"; structure "1^,2^"; splice_chain "83377524^,83366609^";
chr15	juncbase	alternative_donor	83378346	83358205	.	-	.	gene_id "alternative_donor.544"; transcript_id "alternative_donor.544"; gene_name "CUFF.1743"; flanks "83378346-,83358205^"; structure "1^,2^"; splice_chain "83378346^,83377524^";
chr15	juncbase	alternative_donor	83358515	83358205	.	-	.	gene_id "alternative_donor.545"; transcript_id "alternative_donor.545"; gene_name "CUFF.1743"; flanks "83358515-,83358205^"; structure "1^,2^"; splice_chain "83377524^,83358515^";
chr15	juncbase	jcn_only_AD	24811359	24811803	.	+	.	gene_id "jcn_only_AD.673"; transcript_id "jcn_only_AD.673"; gene_name "CUFF.1652"; flanks "24811359-,24811803^"; structure "1^,2^"; splice_chain "24780953^,24811359^";
chr15	juncbase	jcn_only_AD	24803468	24811803	.	+	.	gene_id "jcn_only_AD.674"; transcript_id "jcn_only_AD.674"; gene_name "CUFF.1652"; flanks "24803468-,24811803^"; structure "1^,2^"; splice_chain "24780953^,24803468^";
chr15	juncbase	intron_retention	83357910	83357583	.	-	.	gene_id "intron_retention.553"; transcript_id "intron_retention.553"; gene_name "CUFF.1743"; flanks "83357910-,83357583^"; structure "0,1^2-"; splice_chain ",83357910^83357583-";
chr15	juncbase	alternative_acceptor	77451038	77471132	.	-	.	gene_id "alternative_acceptor.436"; transcript_id "alternative_acceptor.436"; gene_name "CUFF.1734"; flanks "77451038-,77471132^"; structure "1-,2-"; splice_chain "77470365-,77451038-";
chr15	juncbase	alternative_donor	97326819	97327383	.	+	.	gene_id "alternative_donor.546"; transcript_id "alternative_donor.546"; gene_name "CUFF.1761"; flanks "97326819-,97327383^"; structure "1^,2^"; splice_chain "97326819^,97327060^";
chr15	juncbase	alternative_donor	97326974	97327383	.	+	.	gene_id "alternative_donor.547"; transcript_id "alternative_donor.547"; gene_name "CUFF.1761"; flanks "97326974-,97327383^"; structure "1^,2^"; splice_chain "97326974^,97327060^";
chr15	juncbase	alternative_donor	77713079	77750746	.	+	.	gene_id "alternative_donor.548"; transcript_id "alternative_donor.548"; gene_name "CUFF.1735"; flanks "77713079-,77750746^"; structure "1^,2^"; splice_chain "77713079^,77713436^";
chr15	juncbase	alternative_donor	77740153	77750746	.	+	.	gene_id "alternative_donor.549"; transcript_id "alternative_donor.549"; gene_name "CUFF.1735"; flanks "77740153-,77750746^"; structure "1^,2^"; splice_chain "77713436^,77740153^";
chr15	juncbase	alternative_donor	77713346	77750746	.	+	.	gene_id "alternative_donor.550"; transcript_id "alternative_donor.550"; gene_name "CUFF.1735"; flanks "77713346-,77750746^"; structure "1^,2^"; splice_chain "77713346^,77713436^";
chr15	juncbase	alternative_donor	77750626	77750746	.	+	.	gene_id "alternative_donor.551"; transcript_id "alternative_donor.551"; gene_name "CUFF.1735"; flanks "77750626-,77750746^"; structure "1^,2^"; splice_chain "77713436^,77750626^";
chr15	juncbase	alternative_donor	29347038	29367124	.	+	.	gene_id "alternative_donor.552"; transcript_id "alternative_donor.552"; gene_name "CUFF.1659"; flanks "29347038-,29367124^"; structure "1^,2^"; splice_chain "29347038^,29363302^";
chr15	juncbase	alternative_donor	40732164	40750650	.	+	.	gene_id "alternative_donor.553"; transcript_id "alternative_donor.553"; gene_name "CUFF.1666"; flanks "40732164-,40750650^"; structure "1^,2^"; splice_chain "40732164^,40733467^";
chr15	juncbase	cassette	66644467	66641775	.	-	.	gene_id "cassette.357"; transcript_id "cassette.357"; gene_name "CUFF.1725"; flanks "66644467-,66641775^"; structure "0,1-2^"; splice_chain ",66643938-66643863^";
chr15	juncbase	alternative_donor	83334209	83333695	.	-	.	gene_id "alternative_donor.554"; transcript_id "alternative_donor.554"; gene_name "CUFF.1743"; flanks "83334209-,83333695^"; structure "1^,2^"; splice_chain "83334209^,83333999^";
chr14	juncbase	alternative_donor	50067415	50074118	.	+	.	gene_id "alternative_donor.555"; transcript_id "alternative_donor.555"; gene_name "CUFF.1589"; flanks "50067415-,50074118^"; structure "1^,2^"; splice_chain "50067415^,50069186^";
chr14	juncbase	alternative_donor	50070336	50074118	.	+	.	gene_id "alternative_donor.556"; transcript_id "alternative_donor.556"; gene_name "CUFF.1589"; flanks "50070336-,50074118^"; structure "1^,2^"; splice_chain "50069186^,50070336^";
chr14	juncbase	jcn_only_AA	76368567	76372898	.	+	.	gene_id "jcn_only_AA.572"; transcript_id "jcn_only_AA.572"; gene_name ""; flanks "76368567-,76372898^"; structure "1-,2-"; splice_chain "76372898-,76420767-";
chr14	juncbase	jcn_only_AA	76368567	76407767	.	+	.	gene_id "jcn_only_AA.573"; transcript_id "jcn_only_AA.573"; gene_name ""; flanks "76368567-,76407767^"; structure "1-,2-"; splice_chain "76407767-,76420767-";
chr14	juncbase	jcn_only_AD	75179636	75152363	.	-	.	gene_id "jcn_only_AD.675"; transcript_id "jcn_only_AD.675"; gene_name "CUFF.1603"; flanks "75179636-,75152363^"; structure "1^,2^"; splice_chain "75179636^,75158744^";
chr14	juncbase	alternative_acceptor	92195823	92246920	.	-	.	gene_id "alternative_acceptor.437"; transcript_id "alternative_acceptor.437"; gene_name "CUFF.1632"; flanks "92195823-,92246920^"; structure "1-,2-"; splice_chain "92245414-,92195823-";
chr14	juncbase	alternative_acceptor	92203193	92246920	.	-	.	gene_id "alternative_acceptor.438"; transcript_id "alternative_acceptor.438"; gene_name "CUFF.1632"; flanks "92203193-,92246920^"; structure "1-,2-"; splice_chain "92245414-,92203193-";
chr14	juncbase	alternative_acceptor	24572464	24573051	.	+	.	gene_id "alternative_acceptor.439"; transcript_id "alternative_acceptor.439"; gene_name "CUFF.1578,CUFF.1619"; flanks "24572464-,24573051^"; structure "1-,2-"; splice_chain "24572719-,24573051-";
chr14	juncbase	jcn_only_AD	75139534	75138186	.	-	.	gene_id "jcn_only_AD.676"; transcript_id "jcn_only_AD.676"; gene_name ""; flanks "75139534-,75138186^"; structure "1^,2^"; splice_chain "75139534^,75138672^";
chr14	juncbase	cassette	69542062	69522328	.	-	.	gene_id "cassette.358"; transcript_id "cassette.358"; gene_name "CUFF.1612"; flanks "69542062-,69522328^"; structure "0,1-2^"; splice_chain ",69529228-69529101^";
chr14	juncbase	intron_retention	104200704	104200259	.	-	.	gene_id "intron_retention.554"; transcript_id "intron_retention.554"; gene_name "CUFF.1640"; flanks "104200704-,104200259^"; structure "0,1^2-"; splice_chain ",104200704^104200259-";
chr14	juncbase	intron_retention	52485963	52481980	.	-	.	gene_id "intron_retention.555"; transcript_id "intron_retention.555"; gene_name ""; flanks "52485963-,52481980^"; structure "0,1^2-"; splice_chain ",52485963^52481980-";
chr14	juncbase	jcn_only_AD	61448409	61449226	.	+	.	gene_id "jcn_only_AD.677"; transcript_id "jcn_only_AD.677"; gene_name "CUFF.1606"; flanks "61448409-,61449226^"; structure "1^,2^"; splice_chain "61448409^,61448961^";
chr14	juncbase	jcn_only_AD	61448100	61449226	.	+	.	gene_id "jcn_only_AD.678"; transcript_id "jcn_only_AD.678"; gene_name "CUFF.1606"; flanks "61448100-,61449226^"; structure "1^,2^"; splice_chain "61448100^,61448961^";
chr14	juncbase	jcn_only_AD	61448405	61449226	.	+	.	gene_id "jcn_only_AD.679"; transcript_id "jcn_only_AD.679"; gene_name "CUFF.1606"; flanks "61448405-,61449226^"; structure "1^,2^"; splice_chain "61448405^,61448961^";
chr14	juncbase	cassette	77272759	77270255	.	-	.	gene_id "cassette.359"; transcript_id "cassette.359"; gene_name "CUFF.1622"; flanks "77272759-,77270255^"; structure "0,1-2^"; splice_chain ",77270758-77270718^";
chr14	juncbase	alternative_acceptor	31358461	31358590	.	-	.	gene_id "alternative_acceptor.440"; transcript_id "alternative_acceptor.440"; gene_name "CUFF.1584"; flanks "31358461-,31358590^"; structure "1-,2-"; splice_chain "31358483-,31358461-";
chr14	juncbase	jcn_only_AA	75165559	75179636	.	-	.	gene_id "jcn_only_AA.574"; transcript_id "jcn_only_AA.574"; gene_name ""; flanks "75165559-,75179636^"; structure "1-,2-"; splice_chain "75165559-,75152363-";
chr14	juncbase	jcn_only_AA	75159031	75179636	.	-	.	gene_id "jcn_only_AA.575"; transcript_id "jcn_only_AA.575"; gene_name ""; flanks "75159031-,75179636^"; structure "1-,2-"; splice_chain "75159031-,75152363-";
chr14	juncbase	jcn_only_AA	75168477	75179636	.	-	.	gene_id "jcn_only_AA.576"; transcript_id "jcn_only_AA.576"; gene_name ""; flanks "75168477-,75179636^"; structure "1-,2-"; splice_chain "75168477-,75152363-";
chr14	juncbase	jcn_only_AA	77934851	77935420	.	+	.	gene_id "jcn_only_AA.577"; transcript_id "jcn_only_AA.577"; gene_name "CUFF.1623"; flanks "77934851-,77935420^"; structure "1-,2-"; splice_chain "77934933-,77935420-";
chr14	juncbase	cassette	50065921	50069088	.	+	.	gene_id "cassette.360"; transcript_id "cassette.360"; gene_name "CUFF.1589"; flanks "50065921-,50069088^"; structure "0,1-2^"; splice_chain ",50068260-50068367^";
chr14	juncbase	jcn_only_AD	50070336	50074118	.	+	.	gene_id "jcn_only_AD.680"; transcript_id "jcn_only_AD.680"; gene_name "CUFF.1589"; flanks "50070336-,50074118^"; structure "1^,2^"; splice_chain "50067415^,50070336^";
chr14	juncbase	jcn_only_AD	50069186	50074118	.	+	.	gene_id "jcn_only_AD.681"; transcript_id "jcn_only_AD.681"; gene_name "CUFF.1589"; flanks "50069186-,50074118^"; structure "1^,2^"; splice_chain "50067415^,50069186^";
chr14	juncbase	intron_retention	24683516	24683357	.	-	.	gene_id "intron_retention.556"; transcript_id "intron_retention.556"; gene_name "CUFF.1580"; flanks "24683516-,24683357^"; structure "0,1^2-"; splice_chain ",24683516^24683357-";
chr14	juncbase	intron_retention	75158744	75152363	.	-	.	gene_id "intron_retention.557"; transcript_id "intron_retention.557"; gene_name ""; flanks "75158744-,75152363^"; structure "0,1^2-"; splice_chain ",75158744^75152363-";
chr14	juncbase	cassette	61518853	61545528	.	+	.	gene_id "cassette.361"; transcript_id "cassette.361"; gene_name "CUFF.1606"; flanks "61518853-,61545528^"; structure "0,1-2^"; splice_chain ",61519067-61519703^";
chr14	juncbase	cassette	76100039	76129398	.	+	.	gene_id "cassette.362"; transcript_id "cassette.362"; gene_name "CUFF.1619"; flanks "76100039-,76129398^"; structure "0,1-2^"; splice_chain ",76101253-76101356^";
chr14	juncbase	intron_retention	75137465	75136829	.	-	.	gene_id "intron_retention.558"; transcript_id "intron_retention.558"; gene_name ""; flanks "75137465-,75136829^"; structure "0,1^2-"; splice_chain ",75137465^75136829-";
chr14	juncbase	jcn_only_AD	61448409	61449226	.	+	.	gene_id "jcn_only_AD.682"; transcript_id "jcn_only_AD.682"; gene_name "CUFF.1606"; flanks "61448409-,61449226^"; structure "1^,2^"; splice_chain "61448405^,61448409^";
chr14	juncbase	jcn_only_AD	61448961	61449226	.	+	.	gene_id "jcn_only_AD.683"; transcript_id "jcn_only_AD.683"; gene_name "CUFF.1606"; flanks "61448961-,61449226^"; structure "1^,2^"; splice_chain "61448405^,61448961^";
chr14	juncbase	jcn_only_AD	61448100	61449226	.	+	.	gene_id "jcn_only_AD.684"; transcript_id "jcn_only_AD.684"; gene_name "CUFF.1606"; flanks "61448100-,61449226^"; structure "1^,2^"; splice_chain "61448100^,61448405^";
chr14	juncbase	alternative_donor	24459568	24464241	.	+	.	gene_id "alternative_donor.557"; transcript_id "alternative_donor.557"; gene_name "CUFF.1577"; flanks "24459568-,24464241^"; structure "1^,2^"; splice_chain "24459568^,24460161^";
chr14	juncbase	cassette	24572099	24572719	.	+	.	gene_id "cassette.363"; transcript_id "cassette.363"; gene_name "CUFF.1578"; flanks "24572099-,24572719^"; structure "0,1-2^"; splice_chain ",24572369-24572464^";
chr14	juncbase	alternative_donor	76259443	76286350	.	+	.	gene_id "alternative_donor.558"; transcript_id "alternative_donor.558"; gene_name "CUFF.1619"; flanks "76259443-,76286350^"; structure "1^,2^"; splice_chain "76259443^,76269596^";
chr14	juncbase	alternative_donor	61448409	61449226	.	+	.	gene_id "alternative_donor.559"; transcript_id "alternative_donor.559"; gene_name "CUFF.1606"; flanks "61448409-,61449226^"; structure "1^,2^"; splice_chain "61448100^,61448409^";
chr14	juncbase	alternative_donor	61448961	61449226	.	+	.	gene_id "alternative_donor.560"; transcript_id "alternative_donor.560"; gene_name "CUFF.1606"; flanks "61448961-,61449226^"; structure "1^,2^"; splice_chain "61448100^,61448961^";
chr14	juncbase	alternative_donor	61448405	61449226	.	+	.	gene_id "alternative_donor.561"; transcript_id "alternative_donor.561"; gene_name "CUFF.1606"; flanks "61448405-,61449226^"; structure "1^,2^"; splice_chain "61448100^,61448405^";
chr14	juncbase	jcn_only_AD	31358349	31355532	.	-	.	gene_id "jcn_only_AD.685"; transcript_id "jcn_only_AD.685"; gene_name "CUFF.1584"; flanks "31358349-,31355532^"; structure "1^,2^"; splice_chain "31358349^,31358326^";
chr14	juncbase	jcn_only_AD	58908061	58909424	.	+	.	gene_id "jcn_only_AD.686"; transcript_id "jcn_only_AD.686"; gene_name "CUFF.1596"; flanks "58908061-,58909424^"; structure "1^,2^"; splice_chain "58899175^,58908061^";
chr14	juncbase	jcn_only_AD	58906878	58909424	.	+	.	gene_id "jcn_only_AD.687"; transcript_id "jcn_only_AD.687"; gene_name "CUFF.1596"; flanks "58906878-,58909424^"; structure "1^,2^"; splice_chain "58899175^,58906878^";
chr14	juncbase	jcn_only_AD	75152303	75150236	.	-	.	gene_id "jcn_only_AD.688"; transcript_id "jcn_only_AD.688"; gene_name ""; flanks "75152303-,75150236^"; structure "1^,2^"; splice_chain "75152303^,75151157^";
chr14	juncbase	cassette	71201103	71200059	.	-	.	gene_id "cassette.364"; transcript_id "cassette.364"; gene_name "CUFF.1613"; flanks "71201103-,71200059^"; structure "0,1-2^"; splice_chain ",71200515-71200474^";
chr14	juncbase	jcn_only_AD	104245082	104224088	.	-	.	gene_id "jcn_only_AD.689"; transcript_id "jcn_only_AD.689"; gene_name "CUFF.1640"; flanks "104245082-,104224088^"; structure "1^,2^"; splice_chain "104245082^,104225528^";
chr14	juncbase	jcn_only_AD	104230200	104224088	.	-	.	gene_id "jcn_only_AD.690"; transcript_id "jcn_only_AD.690"; gene_name "CUFF.1640"; flanks "104230200-,104224088^"; structure "1^,2^"; splice_chain "104230200^,104225528^";
chr14	juncbase	jcn_only_AA	58899175	58906788	.	+	.	gene_id "jcn_only_AA.578"; transcript_id "jcn_only_AA.578"; gene_name ""; flanks "58899175-,58906788^"; structure "1-,2-"; splice_chain "58906788-,58909424-";
chr14	juncbase	jcn_only_AA	58899175	58899830	.	+	.	gene_id "jcn_only_AA.579"; transcript_id "jcn_only_AA.579"; gene_name ""; flanks "58899175-,58899830^"; structure "1-,2-"; splice_chain "58899830-,58909424-";
chr14	juncbase	cassette	24470726	24475095	.	+	.	gene_id "cassette.365"; transcript_id "cassette.365"; gene_name "CUFF.1577"; flanks "24470726-,24475095^"; structure "0,1-2^"; splice_chain ",24473546-24473601^";
chr14	juncbase	jcn_only_AD	76368567	76420767	.	+	.	gene_id "jcn_only_AD.691"; transcript_id "jcn_only_AD.691"; gene_name ""; flanks "76368567-,76420767^"; structure "1^,2^"; splice_chain "76368567^,76407837^";
chr14	juncbase	jcn_only_AD	76373020	76420767	.	+	.	gene_id "jcn_only_AD.692"; transcript_id "jcn_only_AD.692"; gene_name ""; flanks "76373020-,76420767^"; structure "1^,2^"; splice_chain "76373020^,76407837^";
chr14	juncbase	alternative_acceptor	61512885	61514869	.	+	.	gene_id "alternative_acceptor.441"; transcript_id "alternative_acceptor.441"; gene_name "CUFF.1606"; flanks "61512885-,61514869^"; structure "1-,2-"; splice_chain "61514869-,61514966-";
chr14	juncbase	alternative_acceptor	61512885	61517230	.	+	.	gene_id "alternative_acceptor.442"; transcript_id "alternative_acceptor.442"; gene_name "CUFF.1606"; flanks "61512885-,61517230^"; structure "1-,2-"; splice_chain "61514966-,61517230-";
chr14	juncbase	alternative_donor	71206759	71205115	.	-	.	gene_id "alternative_donor.562"; transcript_id "alternative_donor.562"; gene_name "CUFF.1613"; flanks "71206759-,71205115^"; structure "1^,2^"; splice_chain "71206759^,71206615^";
chr14	juncbase	cassette	39944159	39961459	.	+	.	gene_id "cassette.366"; transcript_id "cassette.366"; gene_name "CUFF.1585"; flanks "39944159-,39961459^"; structure "0,1-2^"; splice_chain ",39954221-39954461^";
chr14	juncbase	jcn_only_AA	92203193	92246920	.	-	.	gene_id "jcn_only_AA.580"; transcript_id "jcn_only_AA.580"; gene_name "CUFF.1632"; flanks "92203193-,92246920^"; structure "1-,2-"; splice_chain "92203193-,92195823-";
chr14	juncbase	jcn_only_AA	92245414	92246920	.	-	.	gene_id "jcn_only_AA.581"; transcript_id "jcn_only_AA.581"; gene_name "CUFF.1632"; flanks "92245414-,92246920^"; structure "1-,2-"; splice_chain "92245414-,92195823-";
chr14	juncbase	jcn_only_AD	92958584	92959820	.	+	.	gene_id "jcn_only_AD.693"; transcript_id "jcn_only_AD.693"; gene_name "CUFF.1633"; flanks "92958584-,92959820^"; structure "1^,2^"; splice_chain "92958584^,92959268^";
chr14	juncbase	jcn_only_AA	50074839	50080974	.	+	.	gene_id "jcn_only_AA.582"; transcript_id "jcn_only_AA.582"; gene_name "CUFF.1589"; flanks "50074839-,50080974^"; structure "1-,2-"; splice_chain "50079190-,50080974-";
chr14	juncbase	jcn_only_AA	106944968	106950171	.	+	.	gene_id "jcn_only_AA.583"; transcript_id "jcn_only_AA.583"; gene_name "CUFF.1641"; flanks "106944968-,106950171^"; structure "1-,2-"; splice_chain "106946394-,106950171-";
chr14	juncbase	alternative_donor	61497241	61503777	.	+	.	gene_id "alternative_donor.563"; transcript_id "alternative_donor.563"; gene_name "CUFF.1606"; flanks "61497241-,61503777^"; structure "1^,2^"; splice_chain "61497241^,61500831^";
chr14	juncbase	jcn_only_AA	76368567	76372898	.	+	.	gene_id "jcn_only_AA.584"; transcript_id "jcn_only_AA.584"; gene_name ""; flanks "76368567-,76372898^"; structure "1-,2-"; splice_chain "76372898-,76407767-";
chr14	juncbase	jcn_only_AA	76368567	76420767	.	+	.	gene_id "jcn_only_AA.585"; transcript_id "jcn_only_AA.585"; gene_name ""; flanks "76368567-,76420767^"; structure "1-,2-"; splice_chain "76407767-,76420767-";
chr14	juncbase	jcn_only_AA	76241973	76243090	.	+	.	gene_id "jcn_only_AA.586"; transcript_id "jcn_only_AA.586"; gene_name "CUFF.1619"; flanks "76241973-,76243090^"; structure "1-,2-"; splice_chain "76243048-,76243090-";
chr14	juncbase	alternative_acceptor	61512885	61514869	.	+	.	gene_id "alternative_acceptor.443"; transcript_id "alternative_acceptor.443"; gene_name ""; flanks "61512885-,61514869^"; structure "1-,2-"; splice_chain "61514869-,61517230-";
chr14	juncbase	alternative_acceptor	61512885	61514966	.	+	.	gene_id "alternative_acceptor.444"; transcript_id "alternative_acceptor.444"; gene_name ""; flanks "61512885-,61514966^"; structure "1-,2-"; splice_chain "61514966-,61517230-";
chr14	juncbase	jcn_only_AA	61545645	61550273	.	+	.	gene_id "jcn_only_AA.587"; transcript_id "jcn_only_AA.587"; gene_name "CUFF.1606"; flanks "61545645-,61550273^"; structure "1-,2-"; splice_chain "61550268-,61550273-";
chr14	juncbase	intron_retention	50241396	50244557	.	+	.	gene_id "intron_retention.559"; transcript_id "intron_retention.559"; gene_name "CUFF.1590"; flanks "50241396-,50244557^"; structure "0,1^2-"; splice_chain ",50241396^50244557-";
chr14	juncbase	jcn_only_AA	76243193	76245922	.	+	.	gene_id "jcn_only_AA.588"; transcript_id "jcn_only_AA.588"; gene_name ""; flanks "76243193-,76245922^"; structure "1-,2-"; splice_chain "76245918-,76245922-";
chr14	juncbase	jcn_only_AA	104213109	104213270	.	-	.	gene_id "jcn_only_AA.589"; transcript_id "jcn_only_AA.589"; gene_name ""; flanks "104213109-,104213270^"; structure "1-,2-"; splice_chain "104213109-,104212890-";
chr14	juncbase	jcn_only_AA	104213197	104213270	.	-	.	gene_id "jcn_only_AA.590"; transcript_id "jcn_only_AA.590"; gene_name ""; flanks "104213197-,104213270^"; structure "1-,2-"; splice_chain "104213197-,104212890-";
chr14	juncbase	alternative_donor	71227719	71216798	.	-	.	gene_id "alternative_donor.564"; transcript_id "alternative_donor.564"; gene_name "CUFF.1613"; flanks "71227719-,71216798^"; structure "1^,2^"; splice_chain "71227719^,71219655^";
chr14	juncbase	intron_retention	77934527	77935420	.	+	.	gene_id "intron_retention.560"; transcript_id "intron_retention.560"; gene_name ""; flanks "77934527-,77935420^"; structure "0,1^2-"; splice_chain ",77934527^77935420-";
chr14	juncbase	jcn_only_AD	81893446	81864924	.	-	.	gene_id "jcn_only_AD.694"; transcript_id "jcn_only_AD.694"; gene_name "CUFF.1628"; flanks "81893446-,81864924^"; structure "1^,2^"; splice_chain "81893446^,81884507^";
chr14	juncbase	alternative_acceptor	58899175	58906788	.	+	.	gene_id "alternative_acceptor.445"; transcript_id "alternative_acceptor.445"; gene_name ""; flanks "58899175-,58906788^"; structure "1-,2-"; splice_chain "58906788-,58909424-";
chr14	juncbase	alternative_acceptor	58899175	58899830	.	+	.	gene_id "alternative_acceptor.446"; transcript_id "alternative_acceptor.446"; gene_name ""; flanks "58899175-,58899830^"; structure "1-,2-"; splice_chain "58899830-,58909424-";
chr14	juncbase	cassette	24563463	24566101	.	+	.	gene_id "cassette.367"; transcript_id "cassette.367"; gene_name "CUFF.1578"; flanks "24563463-,24566101^"; structure "0,1-2^"; splice_chain ",24563975-24564054^";
chr14	juncbase	cassette	24563643	24566101	.	+	.	gene_id "cassette.368"; transcript_id "cassette.368"; gene_name "CUFF.1578"; flanks "24563643-,24566101^"; structure "0,1-2^"; splice_chain ",24563975-24564054^";
chr14	juncbase	alternative_donor	104245082	104224088	.	-	.	gene_id "alternative_donor.565"; transcript_id "alternative_donor.565"; gene_name "CUFF.1640"; flanks "104245082-,104224088^"; structure "1^,2^"; splice_chain "104245082^,104230200^";
chr14	juncbase	alternative_donor	104225528	104224088	.	-	.	gene_id "alternative_donor.566"; transcript_id "alternative_donor.566"; gene_name "CUFF.1640"; flanks "104225528-,104224088^"; structure "1^,2^"; splice_chain "104230200^,104225528^";
chr14	juncbase	cassette	104263708	104251251	.	-	.	gene_id "cassette.369"; transcript_id "cassette.369"; gene_name "CUFF.1640"; flanks "104263708-,104251251^"; structure "0,1-2^"; splice_chain ",104261000-104260914^";
chr14	juncbase	intron_retention	92915503	92920244	.	+	.	gene_id "intron_retention.561"; transcript_id "intron_retention.561"; gene_name ""; flanks "92915503-,92920244^"; structure "0,1^2-"; splice_chain ",92915503^92920244-";
chr14	juncbase	jcn_only_AD	59950398	59946069	.	-	.	gene_id "jcn_only_AD.695"; transcript_id "jcn_only_AD.695"; gene_name "CUFF.1603"; flanks "59950398-,59946069^"; structure "1^,2^"; splice_chain "59950398^,59950208^";
chr14	juncbase	jcn_only_AD	59950527	59946069	.	-	.	gene_id "jcn_only_AD.696"; transcript_id "jcn_only_AD.696"; gene_name "CUFF.1603"; flanks "59950527-,59946069^"; structure "1^,2^"; splice_chain "59950527^,59950208^";
chr14	juncbase	alternative_acceptor	23390329	23392181	.	+	.	gene_id "alternative_acceptor.447"; transcript_id "alternative_acceptor.447"; gene_name ""; flanks "23390329-,23392181^"; structure "1-,2-"; splice_chain "23392178-,23392181-";
chr14	juncbase	alternative_acceptor	76243193	76245922	.	+	.	gene_id "alternative_acceptor.448"; transcript_id "alternative_acceptor.448"; gene_name ""; flanks "76243193-,76245922^"; structure "1-,2-"; splice_chain "76245918-,76245922-";
chr14	juncbase	alternative_acceptor	58899175	58906788	.	+	.	gene_id "alternative_acceptor.449"; transcript_id "alternative_acceptor.449"; gene_name ""; flanks "58899175-,58906788^"; structure "1-,2-"; splice_chain "58899830-,58906788-";
chr14	juncbase	alternative_acceptor	58899175	58909424	.	+	.	gene_id "alternative_acceptor.450"; transcript_id "alternative_acceptor.450"; gene_name ""; flanks "58899175-,58909424^"; structure "1-,2-"; splice_chain "58899830-,58909424-";
chr14	juncbase	alternative_acceptor	61545645	61550273	.	+	.	gene_id "alternative_acceptor.451"; transcript_id "alternative_acceptor.451"; gene_name "CUFF.1606"; flanks "61545645-,61550273^"; structure "1-,2-"; splice_chain "61550268-,61550273-";
chr14	juncbase	jcn_only_AA	76174050	76184204	.	+	.	gene_id "jcn_only_AA.591"; transcript_id "jcn_only_AA.591"; gene_name ""; flanks "76174050-,76184204^"; structure "1-,2-"; splice_chain "76175522-,76184204-";
chr14	juncbase	jcn_only_AA	92195823	92246920	.	-	.	gene_id "jcn_only_AA.592"; transcript_id "jcn_only_AA.592"; gene_name "CUFF.1632"; flanks "92195823-,92246920^"; structure "1-,2-"; splice_chain "92203193-,92195823-";
chr14	juncbase	jcn_only_AA	92245414	92246920	.	-	.	gene_id "jcn_only_AA.593"; transcript_id "jcn_only_AA.593"; gene_name "CUFF.1632"; flanks "92245414-,92246920^"; structure "1-,2-"; splice_chain "92245414-,92203193-";
chr14	juncbase	alternative_donor	81837332	81745083	.	-	.	gene_id "alternative_donor.567"; transcript_id "alternative_donor.567"; gene_name "CUFF.1628"; flanks "81837332-,81745083^"; structure "1^,2^"; splice_chain "81837332^,81772976^";
chr14	juncbase	alternative_donor	61448409	61449226	.	+	.	gene_id "alternative_donor.568"; transcript_id "alternative_donor.568"; gene_name "CUFF.1606"; flanks "61448409-,61449226^"; structure "1^,2^"; splice_chain "61448409^,61448961^";
chr14	juncbase	alternative_donor	61448100	61449226	.	+	.	gene_id "alternative_donor.569"; transcript_id "alternative_donor.569"; gene_name "CUFF.1606"; flanks "61448100-,61449226^"; structure "1^,2^"; splice_chain "61448100^,61448961^";
chr14	juncbase	alternative_donor	61448405	61449226	.	+	.	gene_id "alternative_donor.570"; transcript_id "alternative_donor.570"; gene_name "CUFF.1606"; flanks "61448405-,61449226^"; structure "1^,2^"; splice_chain "61448405^,61448961^";
chr14	juncbase	cassette	69619661	69585947	.	-	.	gene_id "cassette.370"; transcript_id "cassette.370"; gene_name "CUFF.1612"; flanks "69619661-,69585947^"; structure "0,1-2^"; splice_chain ",69589077-69588934^";
chr14	juncbase	alternative_acceptor	69542128	69558391	.	-	.	gene_id "alternative_acceptor.452"; transcript_id "alternative_acceptor.452"; gene_name "CUFF.1612"; flanks "69542128-,69558391^"; structure "1-,2-"; splice_chain "69557873-,69542128-";
chr14	juncbase	alternative_donor	61512885	61517230	.	+	.	gene_id "alternative_donor.571"; transcript_id "alternative_donor.571"; gene_name "CUFF.1606"; flanks "61512885-,61517230^"; structure "1^,2^"; splice_chain "61512885^,61515015^";
chr14	juncbase	intron_retention	104201337	104201000	.	-	.	gene_id "intron_retention.562"; transcript_id "intron_retention.562"; gene_name "CUFF.1640"; flanks "104201337-,104201000^"; structure "0,1^2-"; splice_chain ",104201337^104201000-";
chr14	juncbase	cassette	23390329	23393510	.	+	.	gene_id "cassette.371"; transcript_id "cassette.371"; gene_name "CUFF.1576"; flanks "23390329-,23393510^"; structure "0,1-2^"; splice_chain ",23392288-23392413^";
chr14	juncbase	cassette	50247040	50249088	.	+	.	gene_id "cassette.372"; transcript_id "cassette.372"; gene_name "CUFF.1590"; flanks "50247040-,50249088^"; structure "0,1-2^"; splice_chain ",50247421-50247493^";
chr14	juncbase	alternative_donor	81893446	81864924	.	-	.	gene_id "alternative_donor.572"; transcript_id "alternative_donor.572"; gene_name "CUFF.1628"; flanks "81893446-,81864924^"; structure "1^,2^"; splice_chain "81893446^,81884507^";
chr14	juncbase	alternative_acceptor	104212890	104213270	.	-	.	gene_id "alternative_acceptor.453"; transcript_id "alternative_acceptor.453"; gene_name ""; flanks "104212890-,104213270^"; structure "1-,2-"; splice_chain "104213197-,104212890-";
chr14	juncbase	alternative_acceptor	104213109	104213270	.	-	.	gene_id "alternative_acceptor.454"; transcript_id "alternative_acceptor.454"; gene_name ""; flanks "104213109-,104213270^"; structure "1-,2-"; splice_chain "104213197-,104213109-";
chr14	juncbase	alternative_acceptor	76249873	76259259	.	+	.	gene_id "alternative_acceptor.455"; transcript_id "alternative_acceptor.455"; gene_name "CUFF.1619"; flanks "76249873-,76259259^"; structure "1-,2-"; splice_chain "76259256-,76259259-";
chr14	juncbase	jcn_only_AA	92922952	92949024	.	+	.	gene_id "jcn_only_AA.594"; transcript_id "jcn_only_AA.594"; gene_name "CUFF.1633"; flanks "92922952-,92949024^"; structure "1-,2-"; splice_chain "92923598-,92949024-";
chr14	juncbase	jcn_only_AA	92195823	92246920	.	-	.	gene_id "jcn_only_AA.595"; transcript_id "jcn_only_AA.595"; gene_name "CUFF.1632"; flanks "92195823-,92246920^"; structure "1-,2-"; splice_chain "92245414-,92195823-";
chr14	juncbase	jcn_only_AA	92203193	92246920	.	-	.	gene_id "jcn_only_AA.596"; transcript_id "jcn_only_AA.596"; gene_name "CUFF.1632"; flanks "92203193-,92246920^"; structure "1-,2-"; splice_chain "92245414-,92203193-";
chr14	juncbase	jcn_only_AA	55494189	55498607	.	+	.	gene_id "jcn_only_AA.597"; transcript_id "jcn_only_AA.597"; gene_name "CUFF.1595"; flanks "55494189-,55498607^"; structure "1-,2-"; splice_chain "55498581-,55498607-";
chr14	juncbase	intron_retention	50246393	50246466	.	+	.	gene_id "intron_retention.563"; transcript_id "intron_retention.563"; gene_name "CUFF.1590"; flanks "50246393-,50246466^"; structure "0,1^2-"; splice_chain ",50246393^50246466-";
chr14	juncbase	cassette	71249940	71227899	.	-	.	gene_id "cassette.373"; transcript_id "cassette.373"; gene_name "CUFF.1613"; flanks "71249940-,71227899^"; structure "0,1-2^"; splice_chain ",71232204-71232159^";
chr14	juncbase	jcn_only_AD	24459568	24464241	.	+	.	gene_id "jcn_only_AD.697"; transcript_id "jcn_only_AD.697"; gene_name "CUFF.1577"; flanks "24459568-,24464241^"; structure "1^,2^"; splice_chain "24459568^,24460161^";
chr14	juncbase	cassette	92191424	92185822	.	-	.	gene_id "cassette.374"; transcript_id "cassette.374"; gene_name "CUFF.1632"; flanks "92191424-,92185822^"; structure "0,1-2^"; splice_chain ",92189533-92189393^";
chr14	juncbase	intron_retention	24568929	24569204	.	+	.	gene_id "intron_retention.564"; transcript_id "intron_retention.564"; gene_name "CUFF.1578"; flanks "24568929-,24569204^"; structure "0,1^2-"; splice_chain ",24568929^24569204-";
chr14	juncbase	alternative_acceptor	60018140	60027837	.	-	.	gene_id "alternative_acceptor.456"; transcript_id "alternative_acceptor.456"; gene_name "CUFF.1604"; flanks "60018140-,60027837^"; structure "1-,2-"; splice_chain "60018154-,60018140-";
chr14	juncbase	jcn_only_AD	76259443	76286350	.	+	.	gene_id "jcn_only_AD.698"; transcript_id "jcn_only_AD.698"; gene_name "CUFF.1619"; flanks "76259443-,76286350^"; structure "1^,2^"; splice_chain "76259443^,76269596^";
chr14	juncbase	jcn_only_AD	61448961	61449226	.	+	.	gene_id "jcn_only_AD.699"; transcript_id "jcn_only_AD.699"; gene_name "CUFF.1606"; flanks "61448961-,61449226^"; structure "1^,2^"; splice_chain "61448409^,61448961^";
chr14	juncbase	jcn_only_AD	61448100	61449226	.	+	.	gene_id "jcn_only_AD.700"; transcript_id "jcn_only_AD.700"; gene_name "CUFF.1606"; flanks "61448100-,61449226^"; structure "1^,2^"; splice_chain "61448100^,61448409^";
chr14	juncbase	jcn_only_AD	61448405	61449226	.	+	.	gene_id "jcn_only_AD.701"; transcript_id "jcn_only_AD.701"; gene_name "CUFF.1606"; flanks "61448405-,61449226^"; structure "1^,2^"; splice_chain "61448405^,61448409^";
chr14	juncbase	alternative_donor	92792322	92900256	.	+	.	gene_id "alternative_donor.573"; transcript_id "alternative_donor.573"; gene_name "CUFF.1633"; flanks "92792322-,92900256^"; structure "1^,2^"; splice_chain "92792322^,92874778^";
chr14	juncbase	jcn_only_AD	50067415	50074118	.	+	.	gene_id "jcn_only_AD.702"; transcript_id "jcn_only_AD.702"; gene_name "CUFF.1589"; flanks "50067415-,50074118^"; structure "1^,2^"; splice_chain "50067415^,50070336^";
chr14	juncbase	jcn_only_AD	50069186	50074118	.	+	.	gene_id "jcn_only_AD.703"; transcript_id "jcn_only_AD.703"; gene_name "CUFF.1589"; flanks "50069186-,50074118^"; structure "1^,2^"; splice_chain "50069186^,50070336^";
chr14	juncbase	cassette	104263708	104245158	.	-	.	gene_id "cassette.375"; transcript_id "cassette.375"; gene_name "CUFF.1640"; flanks "104263708-,104245158^"; structure "0,1-2^"; splice_chain ",104251251-104251132^";
chr14	juncbase	intron_retention	77270718	77270255	.	-	.	gene_id "intron_retention.565"; transcript_id "intron_retention.565"; gene_name "CUFF.1622"; flanks "77270718-,77270255^"; structure "0,1^2-"; splice_chain ",77270718^77270255-";
chr14	juncbase	jcn_only_AD	23389407	23392181	.	+	.	gene_id "jcn_only_AD.704"; transcript_id "jcn_only_AD.704"; gene_name ""; flanks "23389407-,23392181^"; structure "1^,2^"; splice_chain "23389407^,23390329^";
chr14	juncbase	jcn_only_AD	104212710	104209160	.	-	.	gene_id "jcn_only_AD.705"; transcript_id "jcn_only_AD.705"; gene_name "CUFF.1640"; flanks "104212710-,104209160^"; structure "1^,2^"; splice_chain "104212710^,104210228^";
chr14	juncbase	alternative_acceptor	92958584	92959820	.	+	.	gene_id "alternative_acceptor.457"; transcript_id "alternative_acceptor.457"; gene_name "CUFF.1633"; flanks "92958584-,92959820^"; structure "1-,2-"; splice_chain "92959171-,92959820-";
chr14	juncbase	alternative_donor	31358349	31355532	.	-	.	gene_id "alternative_donor.574"; transcript_id "alternative_donor.574"; gene_name "CUFF.1584"; flanks "31358349-,31355532^"; structure "1^,2^"; splice_chain "31358349^,31358326^";
chr14	juncbase	jcn_only_AD	59950527	59946069	.	-	.	gene_id "jcn_only_AD.706"; transcript_id "jcn_only_AD.706"; gene_name ""; flanks "59950527-,59946069^"; structure "1^,2^"; splice_chain "59950527^,59950398^";
chr14	juncbase	jcn_only_AD	59950208	59946069	.	-	.	gene_id "jcn_only_AD.707"; transcript_id "jcn_only_AD.707"; gene_name ""; flanks "59950208-,59946069^"; structure "1^,2^"; splice_chain "59950398^,59950208^";
chr14	juncbase	intron_retention	24567596	24567684	.	+	.	gene_id "intron_retention.566"; transcript_id "intron_retention.566"; gene_name "CUFF.1578"; flanks "24567596-,24567684^"; structure "0,1^2-"; splice_chain ",24567596^24567684-";
chr14	juncbase	cassette	24459568	24473546	.	+	.	gene_id "cassette.376"; transcript_id "cassette.376"; gene_name "CUFF.1577"; flanks "24459568-,24473546^"; structure "0,1-2^"; splice_chain ",24464241-24464342^";
chr14	juncbase	cassette	24459568	24470072	.	+	.	gene_id "cassette.377"; transcript_id "cassette.377"; gene_name "CUFF.1577"; flanks "24459568-,24470072^"; structure "0,1-2^"; splice_chain ",24464241-24464342^";
chr14	juncbase	alternative_acceptor	69584992	69585911	.	-	.	gene_id "alternative_acceptor.458"; transcript_id "alternative_acceptor.458"; gene_name "CUFF.1612"; flanks "69584992-,69585911^"; structure "1-,2-"; splice_chain "69584995-,69584992-";
chr14	juncbase	intron_retention	77929102	77930941	.	+	.	gene_id "intron_retention.567"; transcript_id "intron_retention.567"; gene_name "CUFF.1623"; flanks "77929102-,77930941^"; structure "0,1^2-"; splice_chain ",77929102^77930941-";
chr14	juncbase	alternative_donor	104216131	104212890	.	-	.	gene_id "alternative_donor.575"; transcript_id "alternative_donor.575"; gene_name "CUFF.1603,CUFF.1640"; flanks "104216131-,104212890^"; structure "1^,2^"; splice_chain "104216131^,104212989^";
chr14	juncbase	alternative_donor	104213270	104212890	.	-	.	gene_id "alternative_donor.576"; transcript_id "alternative_donor.576"; gene_name "CUFF.1603,CUFF.1640"; flanks "104213270-,104212890^"; structure "1^,2^"; splice_chain "104213270^,104212989^";
chr14	juncbase	jcn_only_AD	58899175	58909424	.	+	.	gene_id "jcn_only_AD.708"; transcript_id "jcn_only_AD.708"; gene_name "CUFF.1596"; flanks "58899175-,58909424^"; structure "1^,2^"; splice_chain "58899175^,58908061^";
chr14	juncbase	jcn_only_AD	58906878	58909424	.	+	.	gene_id "jcn_only_AD.709"; transcript_id "jcn_only_AD.709"; gene_name "CUFF.1596"; flanks "58906878-,58909424^"; structure "1^,2^"; splice_chain "58906878^,58908061^";
chr14	juncbase	alternative_acceptor	106944968	106950171	.	+	.	gene_id "alternative_acceptor.459"; transcript_id "alternative_acceptor.459"; gene_name "CUFF.1641"; flanks "106944968-,106950171^"; structure "1-,2-"; splice_chain "106946394-,106950171-";
chr14	juncbase	jcn_only_AD	61448409	61449226	.	+	.	gene_id "jcn_only_AD.710"; transcript_id "jcn_only_AD.710"; gene_name "CUFF.1606"; flanks "61448409-,61449226^"; structure "1^,2^"; splice_chain "61448100^,61448409^";
chr14	juncbase	jcn_only_AD	61448961	61449226	.	+	.	gene_id "jcn_only_AD.711"; transcript_id "jcn_only_AD.711"; gene_name "CUFF.1606"; flanks "61448961-,61449226^"; structure "1^,2^"; splice_chain "61448100^,61448961^";
chr14	juncbase	jcn_only_AD	61448405	61449226	.	+	.	gene_id "jcn_only_AD.712"; transcript_id "jcn_only_AD.712"; gene_name "CUFF.1606"; flanks "61448405-,61449226^"; structure "1^,2^"; splice_chain "61448100^,61448405^";
chr14	juncbase	cassette	76219298	76230958	.	+	.	gene_id "cassette.378"; transcript_id "cassette.378"; gene_name "CUFF.1619"; flanks "76219298-,76230958^"; structure "0,1-2^"; splice_chain ",76224174-76224212^";
chr14	juncbase	jcn_only_AD	75165467	75159031	.	-	.	gene_id "jcn_only_AD.713"; transcript_id "jcn_only_AD.713"; gene_name ""; flanks "75165467-,75159031^"; structure "1^,2^"; splice_chain "75179636^,75165467^";
chr14	juncbase	jcn_only_AD	75179557	75159031	.	-	.	gene_id "jcn_only_AD.714"; transcript_id "jcn_only_AD.714"; gene_name ""; flanks "75179557-,75159031^"; structure "1^,2^"; splice_chain "75179636^,75179557^";
chr14	juncbase	jcn_only_AA	23390329	23392181	.	+	.	gene_id "jcn_only_AA.598"; transcript_id "jcn_only_AA.598"; gene_name ""; flanks "23390329-,23392181^"; structure "1-,2-"; splice_chain "23392178-,23392181-";
chr14	juncbase	jcn_only_AA	24572464	24573051	.	+	.	gene_id "jcn_only_AA.599"; transcript_id "jcn_only_AA.599"; gene_name "CUFF.1578,CUFF.1619"; flanks "24572464-,24573051^"; structure "1-,2-"; splice_chain "24572719-,24573051-";
chr14	juncbase	jcn_only_AD	81837332	81745083	.	-	.	gene_id "jcn_only_AD.715"; transcript_id "jcn_only_AD.715"; gene_name "CUFF.1628"; flanks "81837332-,81745083^"; structure "1^,2^"; splice_chain "81837332^,81772976^";
chr14	juncbase	jcn_only_AA	75165559	75179636	.	-	.	gene_id "jcn_only_AA.600"; transcript_id "jcn_only_AA.600"; gene_name ""; flanks "75165559-,75179636^"; structure "1-,2-"; splice_chain "75165559-,75159031-";
chr14	juncbase	jcn_only_AA	75152363	75179636	.	-	.	gene_id "jcn_only_AA.601"; transcript_id "jcn_only_AA.601"; gene_name ""; flanks "75152363-,75179636^"; structure "1-,2-"; splice_chain "75159031-,75152363-";
chr14	juncbase	jcn_only_AA	75168477	75179636	.	-	.	gene_id "jcn_only_AA.602"; transcript_id "jcn_only_AA.602"; gene_name ""; flanks "75168477-,75179636^"; structure "1-,2-"; splice_chain "75168477-,75159031-";
chr14	juncbase	cassette	75130602	75127643	.	-	.	gene_id "cassette.379"; transcript_id "cassette.379"; gene_name "CUFF.1617"; flanks "75130602-,75127643^"; structure "0,1-2^"; splice_chain ",75130525-75130215^";
chr14	juncbase	alternative_donor	81893645	81893556	.	-	.	gene_id "alternative_donor.577"; transcript_id "alternative_donor.577"; gene_name "CUFF.1628"; flanks "81893645-,81893556^"; structure "1^,2^"; splice_chain "81902665^,81893645^";
chr14	juncbase	alternative_donor	81902432	81893556	.	-	.	gene_id "alternative_donor.578"; transcript_id "alternative_donor.578"; gene_name "CUFF.1628"; flanks "81902432-,81893556^"; structure "1^,2^"; splice_chain "81902665^,81902432^";
chr14	juncbase	jcn_only_AA	76349245	76368485	.	+	.	gene_id "jcn_only_AA.603"; transcript_id "jcn_only_AA.603"; gene_name ""; flanks "76349245-,76368485^"; structure "1-,2-"; splice_chain "76353043-,76368485-";
chr14	juncbase	alternative_donor	104245082	104224088	.	-	.	gene_id "alternative_donor.579"; transcript_id "alternative_donor.579"; gene_name "CUFF.1640"; flanks "104245082-,104224088^"; structure "1^,2^"; splice_chain "104245082^,104225528^";
chr14	juncbase	alternative_donor	104230200	104224088	.	-	.	gene_id "alternative_donor.580"; transcript_id "alternative_donor.580"; gene_name "CUFF.1640"; flanks "104230200-,104224088^"; structure "1^,2^"; splice_chain "104230200^,104225528^";
chr14	juncbase	intron_retention	77924325	77925959	.	+	.	gene_id "intron_retention.568"; transcript_id "intron_retention.568"; gene_name "CUFF.1623"; flanks "77924325-,77925959^"; structure "0,1^2-"; splice_chain ",77924325^77925959-";
chr14	juncbase	jcn_only_AA	106938644	106960261	.	+	.	gene_id "jcn_only_AA.604"; transcript_id "jcn_only_AA.604"; gene_name "CUFF.1643"; flanks "106938644-,106960261^"; structure "1-,2-"; splice_chain "106944775-,106960261-";
chr14	juncbase	intron_retention	61518853	61545548	.	+	.	gene_id "intron_retention.569"; transcript_id "intron_retention.569"; gene_name ""; flanks "61518853-,61545548^"; structure "0,1^2-"; splice_chain ",61518853^61545548-";
chr14	juncbase	jcn_only_AD	104212989	104212890	.	-	.	gene_id "jcn_only_AD.716"; transcript_id "jcn_only_AD.716"; gene_name ""; flanks "104212989-,104212890^"; structure "1^,2^"; splice_chain "104216131^,104212989^";
chr14	juncbase	jcn_only_AD	104213270	104212890	.	-	.	gene_id "jcn_only_AD.717"; transcript_id "jcn_only_AD.717"; gene_name ""; flanks "104213270-,104212890^"; structure "1^,2^"; splice_chain "104216131^,104213270^";
chr14	juncbase	alternative_donor	69619661	69589077	.	-	.	gene_id "alternative_donor.581"; transcript_id "alternative_donor.581"; gene_name "CUFF.1612"; flanks "69619661-,69589077^"; structure "1^,2^"; splice_chain "69619661^,69619482^";
chr14	juncbase	intron_retention	75130602	75130525	.	-	.	gene_id "intron_retention.570"; transcript_id "intron_retention.570"; gene_name "CUFF.1617"; flanks "75130602-,75130525^"; structure "0,1^2-"; splice_chain ",75130602^75130525-";
chr14	juncbase	alternative_acceptor	92195823	92246920	.	-	.	gene_id "alternative_acceptor.460"; transcript_id "alternative_acceptor.460"; gene_name "CUFF.1632"; flanks "92195823-,92246920^"; structure "1-,2-"; splice_chain "92203193-,92195823-";
chr14	juncbase	alternative_acceptor	92245414	92246920	.	-	.	gene_id "alternative_acceptor.461"; transcript_id "alternative_acceptor.461"; gene_name "CUFF.1632"; flanks "92245414-,92246920^"; structure "1-,2-"; splice_chain "92245414-,92203193-";
chr14	juncbase	alternative_acceptor	104212890	104213270	.	-	.	gene_id "alternative_acceptor.462"; transcript_id "alternative_acceptor.462"; gene_name ""; flanks "104212890-,104213270^"; structure "1-,2-"; splice_chain "104213109-,104212890-";
chr14	juncbase	alternative_acceptor	104213197	104213270	.	-	.	gene_id "alternative_acceptor.463"; transcript_id "alternative_acceptor.463"; gene_name ""; flanks "104213197-,104213270^"; structure "1-,2-"; splice_chain "104213197-,104213109-";
chr14	juncbase	jcn_only_AA	61512885	61514869	.	+	.	gene_id "jcn_only_AA.605"; transcript_id "jcn_only_AA.605"; gene_name ""; flanks "61512885-,61514869^"; structure "1-,2-"; splice_chain "61514869-,61517230-";
chr14	juncbase	jcn_only_AA	61512885	61514966	.	+	.	gene_id "jcn_only_AA.606"; transcript_id "jcn_only_AA.606"; gene_name ""; flanks "61512885-,61514966^"; structure "1-,2-"; splice_chain "61514966-,61517230-";
chr14	juncbase	intron_retention	61448100	61449226	.	+	.	gene_id "intron_retention.571"; transcript_id "intron_retention.571"; gene_name "CUFF.1606"; flanks "61448100-,61449226^"; structure "0,1^2-"; splice_chain ",61448100^61449226-";
chr14	juncbase	alternative_donor	104230200	104224088	.	-	.	gene_id "alternative_donor.582"; transcript_id "alternative_donor.582"; gene_name ""; flanks "104230200-,104224088^"; structure "1^,2^"; splice_chain "104245082^,104230200^";
chr14	juncbase	alternative_donor	104225528	104224088	.	-	.	gene_id "alternative_donor.583"; transcript_id "alternative_donor.583"; gene_name ""; flanks "104225528-,104224088^"; structure "1^,2^"; splice_chain "104245082^,104225528^";
chr14	juncbase	alternative_acceptor	76241973	76243090	.	+	.	gene_id "alternative_acceptor.464"; transcript_id "alternative_acceptor.464"; gene_name "CUFF.1619"; flanks "76241973-,76243090^"; structure "1-,2-"; splice_chain "76243048-,76243090-";
chr14	juncbase	jcn_only_AD	31354619	31353880	.	-	.	gene_id "jcn_only_AD.718"; transcript_id "jcn_only_AD.718"; gene_name "CUFF.1584,CUFF.1632"; flanks "31354619-,31353880^"; structure "1^,2^"; splice_chain "31354619^,31354174^";
chr14	juncbase	jcn_only_AD	59941446	59939808	.	-	.	gene_id "jcn_only_AD.719"; transcript_id "jcn_only_AD.719"; gene_name "CUFF.1603"; flanks "59941446-,59939808^"; structure "1^,2^"; splice_chain "59941446^,59941157^";
chr14	juncbase	alternative_donor	50235339	50238312	.	+	.	gene_id "alternative_donor.584"; transcript_id "alternative_donor.584"; gene_name "CUFF.1590"; flanks "50235339-,50238312^"; structure "1^,2^"; splice_chain "50235339^,50235809^";
chr14	juncbase	jcn_only_AD	104216131	104212890	.	-	.	gene_id "jcn_only_AD.720"; transcript_id "jcn_only_AD.720"; gene_name "CUFF.1640"; flanks "104216131-,104212890^"; structure "1^,2^"; splice_chain "104216131^,104213270^";
chr14	juncbase	jcn_only_AD	104212989	104212890	.	-	.	gene_id "jcn_only_AD.721"; transcript_id "jcn_only_AD.721"; gene_name "CUFF.1640"; flanks "104212989-,104212890^"; structure "1^,2^"; splice_chain "104213270^,104212989^";
chr14	juncbase	jcn_only_AD	104245082	104224088	.	-	.	gene_id "jcn_only_AD.722"; transcript_id "jcn_only_AD.722"; gene_name "CUFF.1640"; flanks "104245082-,104224088^"; structure "1^,2^"; splice_chain "104245082^,104230200^";
chr14	juncbase	jcn_only_AD	104225528	104224088	.	-	.	gene_id "jcn_only_AD.723"; transcript_id "jcn_only_AD.723"; gene_name "CUFF.1640"; flanks "104225528-,104224088^"; structure "1^,2^"; splice_chain "104230200^,104225528^";
chr14	juncbase	jcn_only_AA	59377060	59475752	.	+	.	gene_id "jcn_only_AA.607"; transcript_id "jcn_only_AA.607"; gene_name "CUFF.1598"; flanks "59377060-,59475752^"; structure "1-,2-"; splice_chain "59415031-,59475752-";
chr14	juncbase	alternative_donor	92958584	92959820	.	+	.	gene_id "alternative_donor.585"; transcript_id "alternative_donor.585"; gene_name "CUFF.1633"; flanks "92958584-,92959820^"; structure "1^,2^"; splice_chain "92958584^,92959268^";
chr14	juncbase	jcn_only_AD	81902665	81893556	.	-	.	gene_id "jcn_only_AD.724"; transcript_id "jcn_only_AD.724"; gene_name "CUFF.1640"; flanks "81902665-,81893556^"; structure "1^,2^"; splice_chain "81902665^,81893645^";
chr14	juncbase	jcn_only_AD	81902432	81893556	.	-	.	gene_id "jcn_only_AD.725"; transcript_id "jcn_only_AD.725"; gene_name "CUFF.1640"; flanks "81902432-,81893556^"; structure "1^,2^"; splice_chain "81902432^,81893645^";
chr14	juncbase	intron_retention	52473255	52472567	.	-	.	gene_id "intron_retention.572"; transcript_id "intron_retention.572"; gene_name "CUFF.1593"; flanks "52473255-,52472567^"; structure "0,1^2-"; splice_chain ",52473255^52472567-";
chr14	juncbase	jcn_only_AA	104212890	104213270	.	-	.	gene_id "jcn_only_AA.608"; transcript_id "jcn_only_AA.608"; gene_name ""; flanks "104212890-,104213270^"; structure "1-,2-"; splice_chain "104213197-,104212890-";
chr14	juncbase	jcn_only_AA	104213109	104213270	.	-	.	gene_id "jcn_only_AA.609"; transcript_id "jcn_only_AA.609"; gene_name ""; flanks "104213109-,104213270^"; structure "1-,2-"; splice_chain "104213197-,104213109-";
chr14	juncbase	intron_retention	104313879	104206400	.	-	.	gene_id "intron_retention.573"; transcript_id "intron_retention.573"; gene_name ""; flanks "104313879-,104206400^"; structure "0,1^2-"; splice_chain ",104313879^104206400-";
chr14	juncbase	alternative_acceptor	50074839	50080974	.	+	.	gene_id "alternative_acceptor.465"; transcript_id "alternative_acceptor.465"; gene_name "CUFF.1589"; flanks "50074839-,50080974^"; structure "1-,2-"; splice_chain "50079190-,50080974-";
chr14	juncbase	cassette	58956958	58965501	.	+	.	gene_id "cassette.380"; transcript_id "cassette.380"; gene_name "CUFF.1596"; flanks "58956958-,58965501^"; structure "0,1-2^"; splice_chain ",58958862-58958993^";
chr14	juncbase	alternative_donor	76149999	76156535	.	+	.	gene_id "alternative_donor.586"; transcript_id "alternative_donor.586"; gene_name "CUFF.1619"; flanks "76149999-,76156535^"; structure "1^,2^"; splice_chain "76149999^,76156204^";
chr14	juncbase	alternative_donor	61448409	61449226	.	+	.	gene_id "alternative_donor.587"; transcript_id "alternative_donor.587"; gene_name "CUFF.1606"; flanks "61448409-,61449226^"; structure "1^,2^"; splice_chain "61448405^,61448409^";
chr14	juncbase	alternative_donor	61448961	61449226	.	+	.	gene_id "alternative_donor.588"; transcript_id "alternative_donor.588"; gene_name "CUFF.1606"; flanks "61448961-,61449226^"; structure "1^,2^"; splice_chain "61448405^,61448961^";
chr14	juncbase	alternative_donor	61448100	61449226	.	+	.	gene_id "alternative_donor.589"; transcript_id "alternative_donor.589"; gene_name "CUFF.1606"; flanks "61448100-,61449226^"; structure "1^,2^"; splice_chain "61448100^,61448405^";
chr14	juncbase	cassette	76201632	76211438	.	+	.	gene_id "cassette.381"; transcript_id "cassette.381"; gene_name "CUFF.1619"; flanks "76201632-,76211438^"; structure "0,1-2^"; splice_chain ",76203909-76203950^";
chr14	juncbase	alternative_acceptor	92074747	92076824	.	-	.	gene_id "alternative_acceptor.466"; transcript_id "alternative_acceptor.466"; gene_name "CUFF.1632"; flanks "92074747-,92076824^"; structure "1-,2-"; splice_chain "92074748-,92074747-";
chr14	juncbase	jcn_only_AD	75165467	75159031	.	-	.	gene_id "jcn_only_AD.726"; transcript_id "jcn_only_AD.726"; gene_name ""; flanks "75165467-,75159031^"; structure "1^,2^"; splice_chain "75179557^,75165467^";
chr14	juncbase	jcn_only_AD	75179636	75159031	.	-	.	gene_id "jcn_only_AD.727"; transcript_id "jcn_only_AD.727"; gene_name ""; flanks "75179636-,75159031^"; structure "1^,2^"; splice_chain "75179636^,75179557^";
chr14	juncbase	jcn_only_AA	75165559	75179636	.	-	.	gene_id "jcn_only_AA.610"; transcript_id "jcn_only_AA.610"; gene_name ""; flanks "75165559-,75179636^"; structure "1-,2-"; splice_chain "75168477-,75165559-";
chr14	juncbase	jcn_only_AA	75159031	75179636	.	-	.	gene_id "jcn_only_AA.611"; transcript_id "jcn_only_AA.611"; gene_name ""; flanks "75159031-,75179636^"; structure "1-,2-"; splice_chain "75168477-,75159031-";
chr14	juncbase	jcn_only_AA	75152363	75179636	.	-	.	gene_id "jcn_only_AA.612"; transcript_id "jcn_only_AA.612"; gene_name ""; flanks "75152363-,75179636^"; structure "1-,2-"; splice_chain "75168477-,75152363-";
chr14	juncbase	jcn_only_AA	104202539	104205016	.	-	.	gene_id "jcn_only_AA.613"; transcript_id "jcn_only_AA.613"; gene_name "CUFF.1640"; flanks "104202539-,104205016^"; structure "1-,2-"; splice_chain "104204197-,104202539-";
chr14	juncbase	jcn_only_AD	61497241	61503777	.	+	.	gene_id "jcn_only_AD.728"; transcript_id "jcn_only_AD.728"; gene_name "CUFF.1606"; flanks "61497241-,61503777^"; structure "1^,2^"; splice_chain "61497241^,61500831^";
chr14	juncbase	alternative_donor	81902665	81893556	.	-	.	gene_id "alternative_donor.590"; transcript_id "alternative_donor.590"; gene_name "CUFF.1640"; flanks "81902665-,81893556^"; structure "1^,2^"; splice_chain "81902665^,81893645^";
chr14	juncbase	alternative_donor	81902432	81893556	.	-	.	gene_id "alternative_donor.591"; transcript_id "alternative_donor.591"; gene_name "CUFF.1640"; flanks "81902432-,81893556^"; structure "1^,2^"; splice_chain "81902432^,81893645^";
chr14	juncbase	jcn_only_AD	69619661	69589077	.	-	.	gene_id "jcn_only_AD.729"; transcript_id "jcn_only_AD.729"; gene_name "CUFF.1612"; flanks "69619661-,69589077^"; structure "1^,2^"; splice_chain "69619661^,69619482^";
chr14	juncbase	alternative_donor	76187046	76198681	.	+	.	gene_id "alternative_donor.592"; transcript_id "alternative_donor.592"; gene_name "CUFF.1619"; flanks "76187046-,76198681^"; structure "1^,2^"; splice_chain "76187046^,76198576^";
chr14	juncbase	jcn_only_AD	104216131	104212890	.	-	.	gene_id "jcn_only_AD.730"; transcript_id "jcn_only_AD.730"; gene_name "CUFF.1603,CUFF.1640"; flanks "104216131-,104212890^"; structure "1^,2^"; splice_chain "104216131^,104212989^";
chr14	juncbase	jcn_only_AD	104213270	104212890	.	-	.	gene_id "jcn_only_AD.731"; transcript_id "jcn_only_AD.731"; gene_name "CUFF.1603,CUFF.1640"; flanks "104213270-,104212890^"; structure "1^,2^"; splice_chain "104213270^,104212989^";
chr14	juncbase	cassette	58979345	59014499	.	+	.	gene_id "cassette.382"; transcript_id "cassette.382"; gene_name "CUFF.1596"; flanks "58979345-,59014499^"; structure "0,1-2^"; splice_chain ",59006789-59006854^";
chr14	juncbase	cassette	58925263	58927704	.	+	.	gene_id "cassette.383"; transcript_id "cassette.383"; gene_name "CUFF.1596"; flanks "58925263-,58927704^"; structure "0,1-2^"; splice_chain ",58926561-58926788^";
chr14	juncbase	cassette	103187421	103188524	.	+	.	gene_id "cassette.384"; transcript_id "cassette.384"; gene_name "CUFF.1637"; flanks "103187421-,103188524^"; structure "0,1-2^"; splice_chain ",103187657-103187714^";
chr14	juncbase	jcn_only_AA	92074747	92076824	.	-	.	gene_id "jcn_only_AA.614"; transcript_id "jcn_only_AA.614"; gene_name "CUFF.1632"; flanks "92074747-,92076824^"; structure "1-,2-"; splice_chain "92074748-,92074747-";
chr14	juncbase	cassette	83117340	83153658	.	+	.	gene_id "cassette.385"; transcript_id "cassette.385"; gene_name "CUFF.1629"; flanks "83117340-,83153658^"; structure "0,1-2^"; splice_chain ",83151724-83151775^";
chr14	juncbase	intron_retention	104205016	104204197	.	-	.	gene_id "intron_retention.574"; transcript_id "intron_retention.574"; gene_name "CUFF.1640"; flanks "104205016-,104204197^"; structure "0,1^2-"; splice_chain ",104205016^104204197-";
chr14	juncbase	intron_retention	61518853	61519067	.	+	.	gene_id "intron_retention.575"; transcript_id "intron_retention.575"; gene_name ""; flanks "61518853-,61519067^"; structure "0,1^2-"; splice_chain ",61518853^61519067-";
chr14	juncbase	intron_retention	50246524	50246931	.	+	.	gene_id "intron_retention.576"; transcript_id "intron_retention.576"; gene_name "CUFF.1590"; flanks "50246524-,50246931^"; structure "0,1^2-"; splice_chain ",50246524^50246931-";
chr14	juncbase	cassette	71204962	71201215	.	-	.	gene_id "cassette.386"; transcript_id "cassette.386"; gene_name "CUFF.1613"; flanks "71204962-,71201215^"; structure "0,1-2^"; splice_chain ",71202746-71202678^";
chr14	juncbase	jcn_only_AD	61512885	61517230	.	+	.	gene_id "jcn_only_AD.732"; transcript_id "jcn_only_AD.732"; gene_name "CUFF.1606"; flanks "61512885-,61517230^"; structure "1^,2^"; splice_chain "61512885^,61515015^";
chr14	juncbase	jcn_only_AA	76249873	76259259	.	+	.	gene_id "jcn_only_AA.615"; transcript_id "jcn_only_AA.615"; gene_name "CUFF.1619"; flanks "76249873-,76259259^"; structure "1-,2-"; splice_chain "76259256-,76259259-";
chr14	juncbase	jcn_only_AD	75179636	75165559	.	-	.	gene_id "jcn_only_AD.733"; transcript_id "jcn_only_AD.733"; gene_name ""; flanks "75179636-,75165559^"; structure "1^,2^"; splice_chain "75179636^,75168372^";
chr14	juncbase	alternative_donor	59941446	59939808	.	-	.	gene_id "alternative_donor.593"; transcript_id "alternative_donor.593"; gene_name "CUFF.1603"; flanks "59941446-,59939808^"; structure "1^,2^"; splice_chain "59941446^,59941157^";
chr14	juncbase	cassette	61451521	61482622	.	+	.	gene_id "cassette.387"; transcript_id "cassette.387"; gene_name "CUFF.1606"; flanks "61451521-,61482622^"; structure "0,1-2^"; splice_chain ",61453770-61453875^";
chr14	juncbase	jcn_only_AA	77928585	77934426	.	+	.	gene_id "jcn_only_AA.616"; transcript_id "jcn_only_AA.616"; gene_name "CUFF.1576"; flanks "77928585-,77934426^"; structure "1-,2-"; splice_chain "77928985-,77934426-";
chr14	juncbase	jcn_only_AD	59950398	59946069	.	-	.	gene_id "jcn_only_AD.734"; transcript_id "jcn_only_AD.734"; gene_name "CUFF.1603"; flanks "59950398-,59946069^"; structure "1^,2^"; splice_chain "59950527^,59950398^";
chr14	juncbase	jcn_only_AD	59950208	59946069	.	-	.	gene_id "jcn_only_AD.735"; transcript_id "jcn_only_AD.735"; gene_name "CUFF.1603"; flanks "59950208-,59946069^"; structure "1^,2^"; splice_chain "59950527^,59950208^";
chr14	juncbase	jcn_only_AD	92792322	92900256	.	+	.	gene_id "jcn_only_AD.736"; transcript_id "jcn_only_AD.736"; gene_name "CUFF.1633"; flanks "92792322-,92900256^"; structure "1^,2^"; splice_chain "92792322^,92874778^";
chr14	juncbase	jcn_only_AD	76368567	76420767	.	+	.	gene_id "jcn_only_AD.737"; transcript_id "jcn_only_AD.737"; gene_name ""; flanks "76368567-,76420767^"; structure "1^,2^"; splice_chain "76368567^,76373020^";
chr14	juncbase	jcn_only_AD	76407837	76420767	.	+	.	gene_id "jcn_only_AD.738"; transcript_id "jcn_only_AD.738"; gene_name ""; flanks "76407837-,76420767^"; structure "1^,2^"; splice_chain "76373020^,76407837^";
chr14	juncbase	jcn_only_AD	81893645	81893556	.	-	.	gene_id "jcn_only_AD.739"; transcript_id "jcn_only_AD.739"; gene_name "CUFF.1628"; flanks "81893645-,81893556^"; structure "1^,2^"; splice_chain "81902665^,81893645^";
chr14	juncbase	jcn_only_AD	81902432	81893556	.	-	.	gene_id "jcn_only_AD.740"; transcript_id "jcn_only_AD.740"; gene_name "CUFF.1628"; flanks "81902432-,81893556^"; structure "1^,2^"; splice_chain "81902665^,81902432^";
chr14	juncbase	alternative_acceptor	104213109	104213270	.	-	.	gene_id "alternative_acceptor.467"; transcript_id "alternative_acceptor.467"; gene_name ""; flanks "104213109-,104213270^"; structure "1-,2-"; splice_chain "104213109-,104212890-";
chr14	juncbase	alternative_acceptor	104213197	104213270	.	-	.	gene_id "alternative_acceptor.468"; transcript_id "alternative_acceptor.468"; gene_name ""; flanks "104213197-,104213270^"; structure "1-,2-"; splice_chain "104213197-,104212890-";
chr14	juncbase	intron_retention	104205016	104202539	.	-	.	gene_id "intron_retention.577"; transcript_id "intron_retention.577"; gene_name ""; flanks "104205016-,104202539^"; structure "0,1^2-"; splice_chain ",104205016^104202539-";
chr14	juncbase	cassette	61509930	61512064	.	+	.	gene_id "cassette.388"; transcript_id "cassette.388"; gene_name "CUFF.1606"; flanks "61509930-,61512064^"; structure "0,1-2^"; splice_chain ",61510168-61510221^";
chr14	juncbase	alternative_donor	59950527	59946069	.	-	.	gene_id "alternative_donor.594"; transcript_id "alternative_donor.594"; gene_name ""; flanks "59950527-,59946069^"; structure "1^,2^"; splice_chain "59950527^,59950398^";
chr14	juncbase	alternative_donor	59950208	59946069	.	-	.	gene_id "alternative_donor.595"; transcript_id "alternative_donor.595"; gene_name ""; flanks "59950208-,59946069^"; structure "1^,2^"; splice_chain "59950398^,59950208^";
chr14	juncbase	jcn_only_AD	81902665	81893556	.	-	.	gene_id "jcn_only_AD.741"; transcript_id "jcn_only_AD.741"; gene_name "CUFF.1628"; flanks "81902665-,81893556^"; structure "1^,2^"; splice_chain "81902665^,81902432^";
chr14	juncbase	jcn_only_AD	81893645	81893556	.	-	.	gene_id "jcn_only_AD.742"; transcript_id "jcn_only_AD.742"; gene_name "CUFF.1628"; flanks "81893645-,81893556^"; structure "1^,2^"; splice_chain "81902432^,81893645^";
chr14	juncbase	jcn_only_AA	75138186	75139534	.	-	.	gene_id "jcn_only_AA.617"; transcript_id "jcn_only_AA.617"; gene_name ""; flanks "75138186-,75139534^"; structure "1-,2-"; splice_chain "75138723-,75138186-";
chr14	juncbase	jcn_only_AA	31358461	31358590	.	-	.	gene_id "jcn_only_AA.618"; transcript_id "jcn_only_AA.618"; gene_name "CUFF.1584"; flanks "31358461-,31358590^"; structure "1-,2-"; splice_chain "31358483-,31358461-";
chr14	juncbase	intron_retention	24684943	24684868	.	-	.	gene_id "intron_retention.578"; transcript_id "intron_retention.578"; gene_name "CUFF.1580"; flanks "24684943-,24684868^"; structure "0,1^2-"; splice_chain ",24684943^24684868-";
chr14	juncbase	alternative_acceptor	61518649	61518759	.	+	.	gene_id "alternative_acceptor.469"; transcript_id "alternative_acceptor.469"; gene_name "CUFF.1606"; flanks "61518649-,61518759^"; structure "1-,2-"; splice_chain "61518724-,61518759-";
chr14	juncbase	jcn_only_AA	58899175	58906788	.	+	.	gene_id "jcn_only_AA.619"; transcript_id "jcn_only_AA.619"; gene_name ""; flanks "58899175-,58906788^"; structure "1-,2-"; splice_chain "58899830-,58906788-";
chr14	juncbase	jcn_only_AA	58899175	58909424	.	+	.	gene_id "jcn_only_AA.620"; transcript_id "jcn_only_AA.620"; gene_name ""; flanks "58899175-,58909424^"; structure "1-,2-"; splice_chain "58899830-,58909424-";
chr14	juncbase	jcn_only_AA	61518649	61518759	.	+	.	gene_id "jcn_only_AA.621"; transcript_id "jcn_only_AA.621"; gene_name "CUFF.1606"; flanks "61518649-,61518759^"; structure "1-,2-"; splice_chain "61518724-,61518759-";
chr14	juncbase	jcn_only_AA	75152363	75158744	.	-	.	gene_id "jcn_only_AA.622"; transcript_id "jcn_only_AA.622"; gene_name ""; flanks "75152363-,75158744^"; structure "1-,2-"; splice_chain "75157853-,75152363-";
chr14	juncbase	alternative_donor	59950398	59946069	.	-	.	gene_id "alternative_donor.596"; transcript_id "alternative_donor.596"; gene_name "CUFF.1603"; flanks "59950398-,59946069^"; structure "1^,2^"; splice_chain "59950527^,59950398^";
chr14	juncbase	alternative_donor	59950208	59946069	.	-	.	gene_id "alternative_donor.597"; transcript_id "alternative_donor.597"; gene_name "CUFF.1603"; flanks "59950208-,59946069^"; structure "1^,2^"; splice_chain "59950527^,59950208^";
chr14	juncbase	jcn_only_AD	58894575	58896081	.	+	.	gene_id "jcn_only_AD.743"; transcript_id "jcn_only_AD.743"; gene_name "CUFF.1596"; flanks "58894575-,58896081^"; structure "1^,2^"; splice_chain "58894575^,58895181^";
chr14	juncbase	jcn_only_AD	58894531	58896081	.	+	.	gene_id "jcn_only_AD.744"; transcript_id "jcn_only_AD.744"; gene_name "CUFF.1596"; flanks "58894531-,58896081^"; structure "1^,2^"; splice_chain "58894531^,58895181^";
chr14	juncbase	jcn_only_AD	76149999	76156535	.	+	.	gene_id "jcn_only_AD.745"; transcript_id "jcn_only_AD.745"; gene_name "CUFF.1619"; flanks "76149999-,76156535^"; structure "1^,2^"; splice_chain "76149999^,76156204^";
chr14	juncbase	alternative_acceptor	61512885	61514966	.	+	.	gene_id "alternative_acceptor.470"; transcript_id "alternative_acceptor.470"; gene_name "CUFF.1606"; flanks "61512885-,61514966^"; structure "1-,2-"; splice_chain "61514869-,61514966-";
chr14	juncbase	alternative_acceptor	61512885	61517230	.	+	.	gene_id "alternative_acceptor.471"; transcript_id "alternative_acceptor.471"; gene_name "CUFF.1606"; flanks "61512885-,61517230^"; structure "1-,2-"; splice_chain "61514869-,61517230-";
chr14	juncbase	jcn_only_AA	92958584	92959820	.	+	.	gene_id "jcn_only_AA.623"; transcript_id "jcn_only_AA.623"; gene_name "CUFF.1633"; flanks "92958584-,92959820^"; structure "1-,2-"; splice_chain "92959171-,92959820-";
chr14	juncbase	jcn_only_AA	61512885	61514869	.	+	.	gene_id "jcn_only_AA.624"; transcript_id "jcn_only_AA.624"; gene_name "CUFF.1606"; flanks "61512885-,61514869^"; structure "1-,2-"; splice_chain "61514869-,61514966-";
chr14	juncbase	jcn_only_AA	61512885	61517230	.	+	.	gene_id "jcn_only_AA.625"; transcript_id "jcn_only_AA.625"; gene_name "CUFF.1606"; flanks "61512885-,61517230^"; structure "1-,2-"; splice_chain "61514966-,61517230-";
chr14	juncbase	jcn_only_AD	58894531	58896081	.	+	.	gene_id "jcn_only_AD.746"; transcript_id "jcn_only_AD.746"; gene_name "CUFF.1596"; flanks "58894531-,58896081^"; structure "1^,2^"; splice_chain "58894531^,58894575^";
chr14	juncbase	jcn_only_AD	58895181	58896081	.	+	.	gene_id "jcn_only_AD.747"; transcript_id "jcn_only_AD.747"; gene_name "CUFF.1596"; flanks "58895181-,58896081^"; structure "1^,2^"; splice_chain "58894575^,58895181^";
chr14	juncbase	jcn_only_AA	104201416	104204031	.	-	.	gene_id "jcn_only_AA.626"; transcript_id "jcn_only_AA.626"; gene_name "CUFF.1640"; flanks "104201416-,104204031^"; structure "1-,2-"; splice_chain "104202539-,104201416-";
chr14	juncbase	intron_retention	77929102	77935420	.	+	.	gene_id "intron_retention.579"; transcript_id "intron_retention.579"; gene_name "CUFF.1623"; flanks "77929102-,77935420^"; structure "0,1^2-"; splice_chain ",77929102^77935420-";
chr14	juncbase	jcn_only_AA	104212890	104213270	.	-	.	gene_id "jcn_only_AA.627"; transcript_id "jcn_only_AA.627"; gene_name ""; flanks "104212890-,104213270^"; structure "1-,2-"; splice_chain "104213109-,104212890-";
chr14	juncbase	jcn_only_AA	104213197	104213270	.	-	.	gene_id "jcn_only_AA.628"; transcript_id "jcn_only_AA.628"; gene_name ""; flanks "104213197-,104213270^"; structure "1-,2-"; splice_chain "104213197-,104213109-";
chr14	juncbase	jcn_only_AD	75142444	75140814	.	-	.	gene_id "jcn_only_AD.748"; transcript_id "jcn_only_AD.748"; gene_name "CUFF.1604"; flanks "75142444-,75140814^"; structure "1^,2^"; splice_chain "75142444^,75142402^";
chr14	juncbase	intron_retention	24470142	24470242	.	+	.	gene_id "intron_retention.580"; transcript_id "intron_retention.580"; gene_name "CUFF.1577"; flanks "24470142-,24470242^"; structure "0,1^2-"; splice_chain ",24470142^24470242-";
chr14	juncbase	cassette	24459568	24473546	.	+	.	gene_id "cassette.389"; transcript_id "cassette.389"; gene_name "CUFF.1577"; flanks "24459568-,24473546^"; structure "0,1-2^"; splice_chain ",24470593-24470726^";
chr14	juncbase	intron_retention	104204031	104201416	.	-	.	gene_id "intron_retention.581"; transcript_id "intron_retention.581"; gene_name "CUFF.1640"; flanks "104204031-,104201416^"; structure "0,1^2-"; splice_chain ",104204031^104201416-";
chr14	juncbase	alternative_acceptor	76286504	76330010	.	+	.	gene_id "alternative_acceptor.472"; transcript_id "alternative_acceptor.472"; gene_name "CUFF.1643"; flanks "76286504-,76330010^"; structure "1-,2-"; splice_chain "76286946-,76330010-";
chr14	juncbase	intron_retention	24563463	24563975	.	+	.	gene_id "intron_retention.582"; transcript_id "intron_retention.582"; gene_name "CUFF.1578"; flanks "24563463-,24563975^"; structure "0,1^2-"; splice_chain ",24563463^24563975-";
chr14	juncbase	jcn_only_AD	75138111	75136829	.	-	.	gene_id "jcn_only_AD.749"; transcript_id "jcn_only_AD.749"; gene_name ""; flanks "75138111-,75136829^"; structure "1^,2^"; splice_chain "75138111^,75137465^";
chr14	juncbase	jcn_only_AA	75143455	75149999	.	-	.	gene_id "jcn_only_AA.629"; transcript_id "jcn_only_AA.629"; gene_name ""; flanks "75143455-,75149999^"; structure "1-,2-"; splice_chain "75145032-,75143455-";
chr14	juncbase	alternative_donor	58894531	58896081	.	+	.	gene_id "alternative_donor.598"; transcript_id "alternative_donor.598"; gene_name "CUFF.1596"; flanks "58894531-,58896081^"; structure "1^,2^"; splice_chain "58894531^,58894575^";
chr14	juncbase	alternative_donor	58895181	58896081	.	+	.	gene_id "alternative_donor.599"; transcript_id "alternative_donor.599"; gene_name "CUFF.1596"; flanks "58895181-,58896081^"; structure "1^,2^"; splice_chain "58894575^,58895181^";
chr14	juncbase	intron_retention	24683698	24683601	.	-	.	gene_id "intron_retention.583"; transcript_id "intron_retention.583"; gene_name "CUFF.1580"; flanks "24683698-,24683601^"; structure "0,1^2-"; splice_chain ",24683698^24683601-";
chr14	juncbase	alternative_donor	31354619	31353880	.	-	.	gene_id "alternative_donor.600"; transcript_id "alternative_donor.600"; gene_name "CUFF.1584,CUFF.1632"; flanks "31354619-,31353880^"; structure "1^,2^"; splice_chain "31354619^,31354174^";
chr14	juncbase	jcn_only_AD	71227719	71216798	.	-	.	gene_id "jcn_only_AD.750"; transcript_id "jcn_only_AD.750"; gene_name "CUFF.1613"; flanks "71227719-,71216798^"; structure "1^,2^"; splice_chain "71227719^,71219655^";
chr14	juncbase	jcn_only_AD	24563463	24563975	.	+	.	gene_id "jcn_only_AD.751"; transcript_id "jcn_only_AD.751"; gene_name "CUFF.1578"; flanks "24563463-,24563975^"; structure "1^,2^"; splice_chain "24563463^,24563643^";
chr14	juncbase	cassette	50247493	50249260	.	+	.	gene_id "cassette.390"; transcript_id "cassette.390"; gene_name "CUFF.1590"; flanks "50247493-,50249260^"; structure "0,1-2^"; splice_chain ",50249088-50249175^";
chr14	juncbase	cassette	60018073	60010172	.	-	.	gene_id "cassette.391"; transcript_id "cassette.391"; gene_name "CUFF.1604"; flanks "60018073-,60010172^"; structure "0,1-2^"; splice_chain ",60012017-60011881^";
chr14	juncbase	alternative_donor	23389407	23392181	.	+	.	gene_id "alternative_donor.601"; transcript_id "alternative_donor.601"; gene_name ""; flanks "23389407-,23392181^"; structure "1^,2^"; splice_chain "23389407^,23390329^";
chr14	juncbase	cassette	24564054	24567412	.	+	.	gene_id "cassette.392"; transcript_id "cassette.392"; gene_name "CUFF.1578"; flanks "24564054-,24567412^"; structure "0,1-2^"; splice_chain ",24566101-24566346^";
chr14	juncbase	jcn_only_AD	50067415	50074118	.	+	.	gene_id "jcn_only_AD.752"; transcript_id "jcn_only_AD.752"; gene_name "CUFF.1589"; flanks "50067415-,50074118^"; structure "1^,2^"; splice_chain "50067415^,50069186^";
chr14	juncbase	jcn_only_AD	50070336	50074118	.	+	.	gene_id "jcn_only_AD.753"; transcript_id "jcn_only_AD.753"; gene_name "CUFF.1589"; flanks "50070336-,50074118^"; structure "1^,2^"; splice_chain "50069186^,50070336^";
chr14	juncbase	intron_retention	106208402	106208296	.	-	.	gene_id "intron_retention.584"; transcript_id "intron_retention.584"; gene_name "CUFF.1642"; flanks "106208402-,106208296^"; structure "0,1^2-"; splice_chain ",106208402^106208296-";
chr14	juncbase	jcn_only_AA	75136829	75138111	.	-	.	gene_id "jcn_only_AA.630"; transcript_id "jcn_only_AA.630"; gene_name ""; flanks "75136829-,75138111^"; structure "1-,2-"; splice_chain "75137574-,75136829-";
chr14	juncbase	cassette	50069186	50080974	.	+	.	gene_id "cassette.393"; transcript_id "cassette.393"; gene_name "CUFF.1589"; flanks "50069186-,50080974^"; structure "0,1-2^"; splice_chain ",50074118-50074839^";
chr14	juncbase	jcn_only_AD	75144882	75143455	.	-	.	gene_id "jcn_only_AD.754"; transcript_id "jcn_only_AD.754"; gene_name ""; flanks "75144882-,75143455^"; structure "1^,2^"; splice_chain "75151157^,75144882^";
chr14	juncbase	jcn_only_AD	75149999	75143455	.	-	.	gene_id "jcn_only_AD.755"; transcript_id "jcn_only_AD.755"; gene_name ""; flanks "75149999-,75143455^"; structure "1^,2^"; splice_chain "75151157^,75149999^";
chr14	juncbase	jcn_only_AD	75179636	75159031	.	-	.	gene_id "jcn_only_AD.756"; transcript_id "jcn_only_AD.756"; gene_name ""; flanks "75179636-,75159031^"; structure "1^,2^"; splice_chain "75179636^,75165467^";
chr14	juncbase	jcn_only_AD	75179557	75159031	.	-	.	gene_id "jcn_only_AD.757"; transcript_id "jcn_only_AD.757"; gene_name ""; flanks "75179557-,75159031^"; structure "1^,2^"; splice_chain "75179557^,75165467^";
chr14	juncbase	intron_retention	52495440	52486896	.	-	.	gene_id "intron_retention.585"; transcript_id "intron_retention.585"; gene_name "CUFF.1593"; flanks "52495440-,52486896^"; structure "0,1^2-"; splice_chain ",52495440^52486896-";
chr14	juncbase	cassette	24567887	24568767	.	+	.	gene_id "cassette.394"; transcript_id "cassette.394"; gene_name "CUFF.1578"; flanks "24567887-,24568767^"; structure "0,1-2^"; splice_chain ",24568258-24568445^";
chr14	juncbase	jcn_only_AA	75150236	75152303	.	-	.	gene_id "jcn_only_AA.631"; transcript_id "jcn_only_AA.631"; gene_name ""; flanks "75150236-,75152303^"; structure "1-,2-"; splice_chain "75151383-,75150236-";
chr14	juncbase	alternative_donor	50070336	50074118	.	+	.	gene_id "alternative_donor.602"; transcript_id "alternative_donor.602"; gene_name "CUFF.1589"; flanks "50070336-,50074118^"; structure "1^,2^"; splice_chain "50067415^,50070336^";
chr14	juncbase	alternative_donor	50069186	50074118	.	+	.	gene_id "alternative_donor.603"; transcript_id "alternative_donor.603"; gene_name "CUFF.1589"; flanks "50069186-,50074118^"; structure "1^,2^"; splice_chain "50067415^,50069186^";
chr14	juncbase	cassette	77279107	77275986	.	-	.	gene_id "cassette.395"; transcript_id "cassette.395"; gene_name "CUFF.1622"; flanks "77279107-,77275986^"; structure "0,1-2^"; splice_chain ",77276597-77276432^";
chr14	juncbase	alternative_acceptor	92922952	92949024	.	+	.	gene_id "alternative_acceptor.473"; transcript_id "alternative_acceptor.473"; gene_name "CUFF.1633"; flanks "92922952-,92949024^"; structure "1-,2-"; splice_chain "92923598-,92949024-";
chr14	juncbase	jcn_only_AD	50235339	50238312	.	+	.	gene_id "jcn_only_AD.758"; transcript_id "jcn_only_AD.758"; gene_name "CUFF.1590"; flanks "50235339-,50238312^"; structure "1^,2^"; splice_chain "50235339^,50235809^";
chr14	juncbase	jcn_only_AA	75159031	75179636	.	-	.	gene_id "jcn_only_AA.632"; transcript_id "jcn_only_AA.632"; gene_name ""; flanks "75159031-,75179636^"; structure "1-,2-"; splice_chain "75165559-,75159031-";
chr14	juncbase	jcn_only_AA	75152363	75179636	.	-	.	gene_id "jcn_only_AA.633"; transcript_id "jcn_only_AA.633"; gene_name ""; flanks "75152363-,75179636^"; structure "1-,2-"; splice_chain "75165559-,75152363-";
chr14	juncbase	jcn_only_AA	75168477	75179636	.	-	.	gene_id "jcn_only_AA.634"; transcript_id "jcn_only_AA.634"; gene_name ""; flanks "75168477-,75179636^"; structure "1-,2-"; splice_chain "75168477-,75165559-";
chr14	juncbase	intron_retention	59941446	59941244	.	-	.	gene_id "intron_retention.586"; transcript_id "intron_retention.586"; gene_name "CUFF.1603"; flanks "59941446-,59941244^"; structure "0,1^2-"; splice_chain ",59941446^59941244-";
chr14	juncbase	alternative_donor	59950398	59946069	.	-	.	gene_id "alternative_donor.604"; transcript_id "alternative_donor.604"; gene_name "CUFF.1603"; flanks "59950398-,59946069^"; structure "1^,2^"; splice_chain "59950398^,59950208^";
chr14	juncbase	alternative_donor	59950527	59946069	.	-	.	gene_id "alternative_donor.605"; transcript_id "alternative_donor.605"; gene_name "CUFF.1603"; flanks "59950527-,59946069^"; structure "1^,2^"; splice_chain "59950527^,59950208^";
chr14	juncbase	intron_retention	104204031	104202539	.	-	.	gene_id "intron_retention.587"; transcript_id "intron_retention.587"; gene_name ""; flanks "104204031-,104202539^"; structure "0,1^2-"; splice_chain ",104204031^104202539-";
chr14	juncbase	alternative_donor	104212989	104212890	.	-	.	gene_id "alternative_donor.606"; transcript_id "alternative_donor.606"; gene_name ""; flanks "104212989-,104212890^"; structure "1^,2^"; splice_chain "104216131^,104212989^";
chr14	juncbase	alternative_donor	104213270	104212890	.	-	.	gene_id "alternative_donor.607"; transcript_id "alternative_donor.607"; gene_name ""; flanks "104213270-,104212890^"; structure "1^,2^"; splice_chain "104216131^,104213270^";
chr14	juncbase	alternative_donor	50067415	50074118	.	+	.	gene_id "alternative_donor.608"; transcript_id "alternative_donor.608"; gene_name "CUFF.1589"; flanks "50067415-,50074118^"; structure "1^,2^"; splice_chain "50067415^,50070336^";
chr14	juncbase	alternative_donor	50069186	50074118	.	+	.	gene_id "alternative_donor.609"; transcript_id "alternative_donor.609"; gene_name "CUFF.1589"; flanks "50069186-,50074118^"; structure "1^,2^"; splice_chain "50069186^,50070336^";
chr14	juncbase	alternative_acceptor	55494189	55498607	.	+	.	gene_id "alternative_acceptor.474"; transcript_id "alternative_acceptor.474"; gene_name "CUFF.1595"; flanks "55494189-,55498607^"; structure "1-,2-"; splice_chain "55498581-,55498607-";
chr14	juncbase	intron_retention	75179636	75152363	.	-	.	gene_id "intron_retention.588"; transcript_id "intron_retention.588"; gene_name ""; flanks "75179636-,75152363^"; structure "0,1^2-"; splice_chain ",75179636^75152363-";
chr14	juncbase	cassette	77934527	77935420	.	+	.	gene_id "cassette.396"; transcript_id "cassette.396"; gene_name "CUFF.1623"; flanks "77934527-,77935420^"; structure "0,1-2^"; splice_chain ",77934800-77934851^";
chr14	juncbase	cassette	24564054	24566101	.	+	.	gene_id "cassette.397"; transcript_id "cassette.397"; gene_name "CUFF.1578"; flanks "24564054-,24566101^"; structure "0,1-2^"; splice_chain ",24564352-24564587^";
chr14	juncbase	cassette	104212710	104208628	.	-	.	gene_id "cassette.398"; transcript_id "cassette.398"; gene_name "CUFF.1640"; flanks "104212710-,104208628^"; structure "0,1-2^"; splice_chain ",104209160-104208991^";
chr14	juncbase	jcn_only_AA	69542128	69558391	.	-	.	gene_id "jcn_only_AA.635"; transcript_id "jcn_only_AA.635"; gene_name "CUFF.1612"; flanks "69542128-,69558391^"; structure "1-,2-"; splice_chain "69557873-,69542128-";
chr14	juncbase	jcn_only_AD	76373020	76420767	.	+	.	gene_id "jcn_only_AD.759"; transcript_id "jcn_only_AD.759"; gene_name ""; flanks "76373020-,76420767^"; structure "1^,2^"; splice_chain "76368567^,76373020^";
chr14	juncbase	jcn_only_AD	76407837	76420767	.	+	.	gene_id "jcn_only_AD.760"; transcript_id "jcn_only_AD.760"; gene_name ""; flanks "76407837-,76420767^"; structure "1^,2^"; splice_chain "76368567^,76407837^";
chr14	juncbase	alternative_donor	24563463	24563975	.	+	.	gene_id "alternative_donor.610"; transcript_id "alternative_donor.610"; gene_name "CUFF.1578"; flanks "24563463-,24563975^"; structure "1^,2^"; splice_chain "24563463^,24563643^";
chr14	juncbase	jcn_only_AA	69584992	69585911	.	-	.	gene_id "jcn_only_AA.636"; transcript_id "jcn_only_AA.636"; gene_name "CUFF.1612"; flanks "69584992-,69585911^"; structure "1-,2-"; splice_chain "69584995-,69584992-";
chr14	juncbase	alternative_acceptor	58899175	58899830	.	+	.	gene_id "alternative_acceptor.475"; transcript_id "alternative_acceptor.475"; gene_name ""; flanks "58899175-,58899830^"; structure "1-,2-"; splice_chain "58899830-,58906788-";
chr14	juncbase	alternative_acceptor	58899175	58909424	.	+	.	gene_id "alternative_acceptor.476"; transcript_id "alternative_acceptor.476"; gene_name ""; flanks "58899175-,58909424^"; structure "1-,2-"; splice_chain "58906788-,58909424-";
chr14	juncbase	jcn_only_AD	58894575	58896081	.	+	.	gene_id "jcn_only_AD.761"; transcript_id "jcn_only_AD.761"; gene_name "CUFF.1596"; flanks "58894575-,58896081^"; structure "1^,2^"; splice_chain "58894531^,58894575^";
chr14	juncbase	jcn_only_AD	58895181	58896081	.	+	.	gene_id "jcn_only_AD.762"; transcript_id "jcn_only_AD.762"; gene_name "CUFF.1596"; flanks "58895181-,58896081^"; structure "1^,2^"; splice_chain "58894531^,58895181^";
chr14	juncbase	jcn_only_AA	105054646	105054959	.	+	.	gene_id "jcn_only_AA.637"; transcript_id "jcn_only_AA.637"; gene_name "CUFF.1641"; flanks "105054646-,105054959^"; structure "1-,2-"; splice_chain "105054915-,105054959-";
chr14	juncbase	jcn_only_AA	61512885	61514966	.	+	.	gene_id "jcn_only_AA.638"; transcript_id "jcn_only_AA.638"; gene_name "CUFF.1606"; flanks "61512885-,61514966^"; structure "1-,2-"; splice_chain "61514869-,61514966-";
chr14	juncbase	jcn_only_AA	61512885	61517230	.	+	.	gene_id "jcn_only_AA.639"; transcript_id "jcn_only_AA.639"; gene_name "CUFF.1606"; flanks "61512885-,61517230^"; structure "1-,2-"; splice_chain "61514869-,61517230-";
chr14	juncbase	jcn_only_AA	76368567	76420767	.	+	.	gene_id "jcn_only_AA.640"; transcript_id "jcn_only_AA.640"; gene_name "CUFF.1623"; flanks "76368567-,76420767^"; structure "1-,2-"; splice_chain "76372898-,76420767-";
chr14	juncbase	jcn_only_AA	76368567	76407767	.	+	.	gene_id "jcn_only_AA.641"; transcript_id "jcn_only_AA.641"; gene_name "CUFF.1623"; flanks "76368567-,76407767^"; structure "1-,2-"; splice_chain "76372898-,76407767-";
chr14	juncbase	cassette	23392413	23395670	.	+	.	gene_id "cassette.399"; transcript_id "cassette.399"; gene_name "CUFF.1576"; flanks "23392413-,23395670^"; structure "0,1-2^"; splice_chain ",23393510-23393650^";
chr14	juncbase	cassette	59006854	59014499	.	+	.	gene_id "cassette.400"; transcript_id "cassette.400"; gene_name "CUFF.1596"; flanks "59006854-,59014499^"; structure "0,1-2^"; splice_chain ",59010601-59010685^";
chr14	juncbase	alternative_donor	61448961	61449226	.	+	.	gene_id "alternative_donor.611"; transcript_id "alternative_donor.611"; gene_name "CUFF.1606"; flanks "61448961-,61449226^"; structure "1^,2^"; splice_chain "61448409^,61448961^";
chr14	juncbase	alternative_donor	61448100	61449226	.	+	.	gene_id "alternative_donor.612"; transcript_id "alternative_donor.612"; gene_name "CUFF.1606"; flanks "61448100-,61449226^"; structure "1^,2^"; splice_chain "61448100^,61448409^";
chr14	juncbase	alternative_donor	61448405	61449226	.	+	.	gene_id "alternative_donor.613"; transcript_id "alternative_donor.613"; gene_name "CUFF.1606"; flanks "61448405-,61449226^"; structure "1^,2^"; splice_chain "61448405^,61448409^";
chr14	juncbase	jcn_only_AD	76187046	76198681	.	+	.	gene_id "jcn_only_AD.763"; transcript_id "jcn_only_AD.763"; gene_name "CUFF.1619"; flanks "76187046-,76198681^"; structure "1^,2^"; splice_chain "76187046^,76198576^";
chr14	juncbase	jcn_only_AA	58899175	58899830	.	+	.	gene_id "jcn_only_AA.642"; transcript_id "jcn_only_AA.642"; gene_name ""; flanks "58899175-,58899830^"; structure "1-,2-"; splice_chain "58899830-,58906788-";
chr14	juncbase	jcn_only_AA	58899175	58909424	.	+	.	gene_id "jcn_only_AA.643"; transcript_id "jcn_only_AA.643"; gene_name ""; flanks "58899175-,58909424^"; structure "1-,2-"; splice_chain "58906788-,58909424-";
chr14	juncbase	jcn_only_AD	75151157	75143455	.	-	.	gene_id "jcn_only_AD.764"; transcript_id "jcn_only_AD.764"; gene_name ""; flanks "75151157-,75143455^"; structure "1^,2^"; splice_chain "75151157^,75144882^";
chr14	juncbase	jcn_only_AD	75149999	75143455	.	-	.	gene_id "jcn_only_AD.765"; transcript_id "jcn_only_AD.765"; gene_name ""; flanks "75149999-,75143455^"; structure "1^,2^"; splice_chain "75149999^,75144882^";
chr14	juncbase	alternative_donor	81902665	81893556	.	-	.	gene_id "alternative_donor.614"; transcript_id "alternative_donor.614"; gene_name "CUFF.1628"; flanks "81902665-,81893556^"; structure "1^,2^"; splice_chain "81902665^,81902432^";
chr14	juncbase	alternative_donor	81893645	81893556	.	-	.	gene_id "alternative_donor.615"; transcript_id "alternative_donor.615"; gene_name "CUFF.1628"; flanks "81893645-,81893556^"; structure "1^,2^"; splice_chain "81902432^,81893645^";
chr14	juncbase	jcn_only_AD	77928585	77934426	.	+	.	gene_id "jcn_only_AD.766"; transcript_id "jcn_only_AD.766"; gene_name "CUFF.1623"; flanks "77928585-,77934426^"; structure "1^,2^"; splice_chain "77928585^,77932010^";
chr14	juncbase	jcn_only_AD	75144882	75143455	.	-	.	gene_id "jcn_only_AD.767"; transcript_id "jcn_only_AD.767"; gene_name ""; flanks "75144882-,75143455^"; structure "1^,2^"; splice_chain "75149999^,75144882^";
chr14	juncbase	jcn_only_AD	75151157	75143455	.	-	.	gene_id "jcn_only_AD.768"; transcript_id "jcn_only_AD.768"; gene_name ""; flanks "75151157-,75143455^"; structure "1^,2^"; splice_chain "75151157^,75149999^";
chr14	juncbase	alternative_donor	58894575	58896081	.	+	.	gene_id "alternative_donor.616"; transcript_id "alternative_donor.616"; gene_name "CUFF.1596"; flanks "58894575-,58896081^"; structure "1^,2^"; splice_chain "58894531^,58894575^";
chr14	juncbase	alternative_donor	58895181	58896081	.	+	.	gene_id "alternative_donor.617"; transcript_id "alternative_donor.617"; gene_name "CUFF.1596"; flanks "58895181-,58896081^"; structure "1^,2^"; splice_chain "58894531^,58895181^";
chr14	juncbase	alternative_acceptor	92203193	92246920	.	-	.	gene_id "alternative_acceptor.477"; transcript_id "alternative_acceptor.477"; gene_name "CUFF.1632"; flanks "92203193-,92246920^"; structure "1-,2-"; splice_chain "92203193-,92195823-";
chr14	juncbase	alternative_acceptor	92245414	92246920	.	-	.	gene_id "alternative_acceptor.478"; transcript_id "alternative_acceptor.478"; gene_name "CUFF.1632"; flanks "92245414-,92246920^"; structure "1-,2-"; splice_chain "92245414-,92195823-";
chr14	juncbase	alternative_acceptor	105054646	105054959	.	+	.	gene_id "alternative_acceptor.479"; transcript_id "alternative_acceptor.479"; gene_name "CUFF.1641"; flanks "105054646-,105054959^"; structure "1-,2-"; splice_chain "105054915-,105054959-";
chr14	juncbase	jcn_only_AD	58899175	58909424	.	+	.	gene_id "jcn_only_AD.769"; transcript_id "jcn_only_AD.769"; gene_name "CUFF.1596"; flanks "58899175-,58909424^"; structure "1^,2^"; splice_chain "58899175^,58906878^";
chr14	juncbase	jcn_only_AD	58908061	58909424	.	+	.	gene_id "jcn_only_AD.770"; transcript_id "jcn_only_AD.770"; gene_name "CUFF.1596"; flanks "58908061-,58909424^"; structure "1^,2^"; splice_chain "58906878^,58908061^";
chr14	juncbase	alternative_acceptor	77934851	77935420	.	+	.	gene_id "alternative_acceptor.480"; transcript_id "alternative_acceptor.480"; gene_name "CUFF.1623"; flanks "77934851-,77935420^"; structure "1-,2-"; splice_chain "77934933-,77935420-";
chr14	juncbase	cassette	92136158	92105594	.	-	.	gene_id "cassette.401"; transcript_id "cassette.401"; gene_name "CUFF.1632"; flanks "92136158-,92105594^"; structure "0,1-2^"; splice_chain ",92126325-92126181^";
chr14	juncbase	jcn_only_AA	75136829	75137465	.	-	.	gene_id "jcn_only_AA.644"; transcript_id "jcn_only_AA.644"; gene_name ""; flanks "75136829-,75137465^"; structure "1-,2-"; splice_chain "75136845-,75136829-";
chr14	juncbase	alternative_donor	104216131	104212890	.	-	.	gene_id "alternative_donor.618"; transcript_id "alternative_donor.618"; gene_name "CUFF.1640"; flanks "104216131-,104212890^"; structure "1^,2^"; splice_chain "104216131^,104213270^";
chr14	juncbase	alternative_donor	104212989	104212890	.	-	.	gene_id "alternative_donor.619"; transcript_id "alternative_donor.619"; gene_name "CUFF.1640"; flanks "104212989-,104212890^"; structure "1^,2^"; splice_chain "104213270^,104212989^";
chr14	juncbase	intron_retention	24563643	24563975	.	+	.	gene_id "intron_retention.589"; transcript_id "intron_retention.589"; gene_name ""; flanks "24563643-,24563975^"; structure "0,1^2-"; splice_chain ",24563643^24563975-";
chr14	juncbase	jcn_only_AD	104230200	104224088	.	-	.	gene_id "jcn_only_AD.771"; transcript_id "jcn_only_AD.771"; gene_name ""; flanks "104230200-,104224088^"; structure "1^,2^"; splice_chain "104245082^,104230200^";
chr14	juncbase	jcn_only_AD	104225528	104224088	.	-	.	gene_id "jcn_only_AD.772"; transcript_id "jcn_only_AD.772"; gene_name ""; flanks "104225528-,104224088^"; structure "1^,2^"; splice_chain "104245082^,104225528^";
chr14	juncbase	alternative_donor	104212710	104209160	.	-	.	gene_id "alternative_donor.620"; transcript_id "alternative_donor.620"; gene_name "CUFF.1640"; flanks "104212710-,104209160^"; structure "1^,2^"; splice_chain "104212710^,104210228^";
chr14	juncbase	jcn_only_AA	76286504	76330010	.	+	.	gene_id "jcn_only_AA.645"; transcript_id "jcn_only_AA.645"; gene_name "CUFF.1643"; flanks "76286504-,76330010^"; structure "1-,2-"; splice_chain "76286946-,76330010-";
chr14	juncbase	intron_retention	24569422	24571962	.	+	.	gene_id "intron_retention.590"; transcript_id "intron_retention.590"; gene_name "CUFF.1578"; flanks "24569422-,24571962^"; structure "0,1^2-"; splice_chain ",24569422^24571962-";
chr14	juncbase	jcn_only_AD	71206759	71205115	.	-	.	gene_id "jcn_only_AD.773"; transcript_id "jcn_only_AD.773"; gene_name "CUFF.1613"; flanks "71206759-,71205115^"; structure "1^,2^"; splice_chain "71206759^,71206615^";
chr14	juncbase	jcn_only_AA	60018140	60027837	.	-	.	gene_id "jcn_only_AA.646"; transcript_id "jcn_only_AA.646"; gene_name "CUFF.1604"; flanks "60018140-,60027837^"; structure "1-,2-"; splice_chain "60018154-,60018140-";
chr14	juncbase	cassette	50249175	50249548	.	+	.	gene_id "cassette.402"; transcript_id "cassette.402"; gene_name "CUFF.1590"; flanks "50249175-,50249548^"; structure "0,1-2^"; splice_chain ",50249260-50249312^";
chr14	juncbase	jcn_only_AA	75143455	75151157	.	-	.	gene_id "jcn_only_AA.647"; transcript_id "jcn_only_AA.647"; gene_name ""; flanks "75143455-,75151157^"; structure "1-,2-"; splice_chain "75150236-,75143455-";
chr14	juncbase	cassette	61497241	61504343	.	+	.	gene_id "cassette.403"; transcript_id "cassette.403"; gene_name "CUFF.1606"; flanks "61497241-,61504343^"; structure "0,1-2^"; splice_chain ",61503777-61503859^";
chr14	juncbase	cassette	52495440	52486896	.	-	.	gene_id "cassette.404"; transcript_id "cassette.404"; gene_name "CUFF.1593"; flanks "52495440-,52486896^"; structure "0,1-2^"; splice_chain ",52494062-52493919^";
chr14	juncbase	alternative_donor	58894575	58896081	.	+	.	gene_id "alternative_donor.621"; transcript_id "alternative_donor.621"; gene_name "CUFF.1596"; flanks "58894575-,58896081^"; structure "1^,2^"; splice_chain "58894575^,58895181^";
chr14	juncbase	alternative_donor	58894531	58896081	.	+	.	gene_id "alternative_donor.622"; transcript_id "alternative_donor.622"; gene_name "CUFF.1596"; flanks "58894531-,58896081^"; structure "1^,2^"; splice_chain "58894531^,58895181^";
chr19	juncbase	jcn_only_AD	6148242	6047515	.	-	.	gene_id "jcn_only_AD.774"; transcript_id "jcn_only_AD.774"; gene_name "CUFF.2051"; flanks "6148242-,6047515^"; structure "1^,2^"; splice_chain "6148242^,6057173^";
chr19	juncbase	jcn_only_AD	6049147	6047515	.	-	.	gene_id "jcn_only_AD.775"; transcript_id "jcn_only_AD.775"; gene_name "CUFF.2051"; flanks "6049147-,6047515^"; structure "1^,2^"; splice_chain "6057173^,6049147^";
chr19	juncbase	jcn_only_AD	6110404	6047515	.	-	.	gene_id "jcn_only_AD.776"; transcript_id "jcn_only_AD.776"; gene_name "CUFF.2051"; flanks "6110404-,6047515^"; structure "1^,2^"; splice_chain "6110404^,6057173^";
chr19	juncbase	jcn_only_AD	6072016	6047515	.	-	.	gene_id "jcn_only_AD.777"; transcript_id "jcn_only_AD.777"; gene_name "CUFF.2051"; flanks "6072016-,6047515^"; structure "1^,2^"; splice_chain "6072016^,6057173^";
chr19	juncbase	jcn_only_AA	33968995	33978156	.	-	.	gene_id "jcn_only_AA.648"; transcript_id "jcn_only_AA.648"; gene_name "CUFF.2129"; flanks "33968995-,33978156^"; structure "1-,2-"; splice_chain "33968996-,33968995-";
chr19	juncbase	alternative_donor	17447966	17448683	.	+	.	gene_id "alternative_donor.623"; transcript_id "alternative_donor.623"; gene_name "CUFF.2104"; flanks "17447966-,17448683^"; structure "1^,2^"; splice_chain "17447966^,17448473^";
chr19	juncbase	cassette	14883154	14876616	.	-	.	gene_id "cassette.405"; transcript_id "cassette.405"; gene_name "CUFF.2092"; flanks "14883154-,14876616^"; structure "0,1-2^"; splice_chain ",14877921-14877790^";
chr19	juncbase	intron_retention	49311013	49310331	.	-	.	gene_id "intron_retention.591"; transcript_id "intron_retention.591"; gene_name ""; flanks "49311013-,49310331^"; structure "0,1^2-"; splice_chain ",49311013^49310331-";
chr19	juncbase	intron_retention	50308833	50308982	.	+	.	gene_id "intron_retention.592"; transcript_id "intron_retention.592"; gene_name "CUFF.2167"; flanks "50308833-,50308982^"; structure "0,1^2-"; splice_chain ",50308833^50308982-";
chr19	juncbase	alternative_donor	10204489	10204295	.	-	.	gene_id "alternative_donor.624"; transcript_id "alternative_donor.624"; gene_name "CUFF.2069"; flanks "10204489-,10204295^"; structure "1^,2^"; splice_chain "10204489^,10204369^";
chr19	juncbase	alternative_donor	54656736	54657452	.	+	.	gene_id "alternative_donor.625"; transcript_id "alternative_donor.625"; gene_name "CUFF.2186"; flanks "54656736-,54657452^"; structure "1^,2^"; splice_chain "54656736^,54656819^";
chr19	juncbase	alternative_donor	52266770	52271898	.	+	.	gene_id "alternative_donor.626"; transcript_id "alternative_donor.626"; gene_name "CUFF.2181"; flanks "52266770-,52271898^"; structure "1^,2^"; splice_chain "52266770^,52271785^";
chr19	juncbase	alternative_donor	52264483	52271898	.	+	.	gene_id "alternative_donor.627"; transcript_id "alternative_donor.627"; gene_name "CUFF.2181"; flanks "52264483-,52271898^"; structure "1^,2^"; splice_chain "52264483^,52271785^";
chr19	juncbase	alternative_donor	52265788	52271898	.	+	.	gene_id "alternative_donor.628"; transcript_id "alternative_donor.628"; gene_name "CUFF.2181"; flanks "52265788-,52271898^"; structure "1^,2^"; splice_chain "52265788^,52271785^";
chr19	juncbase	jcn_only_AA	11467652	11468336	.	+	.	gene_id "jcn_only_AA.649"; transcript_id "jcn_only_AA.649"; gene_name "CUFF.2072"; flanks "11467652-,11468336^"; structure "1-,2-"; splice_chain "11468295-,11468336-";
chr19	juncbase	alternative_acceptor	52901157	52901707	.	+	.	gene_id "alternative_acceptor.481"; transcript_id "alternative_acceptor.481"; gene_name "CUFF.2155"; flanks "52901157-,52901707^"; structure "1-,2-"; splice_chain "52901620-,52901707-";
chr19	juncbase	cassette	11537693	11537391	.	-	.	gene_id "cassette.406"; transcript_id "cassette.406"; gene_name "CUFF.2074"; flanks "11537693-,11537391^"; structure "0,1-2^"; splice_chain ",11537604-11537503^";
chr19	juncbase	intron_retention	16212600	16213658	.	+	.	gene_id "intron_retention.593"; transcript_id "intron_retention.593"; gene_name "CUFF.2093"; flanks "16212600-,16213658^"; structure "0,1^2-"; splice_chain ",16212600^16213658-";
chr19	juncbase	intron_retention	49314241	49310331	.	-	.	gene_id "intron_retention.594"; transcript_id "intron_retention.594"; gene_name ""; flanks "49314241-,49310331^"; structure "0,1^2-"; splice_chain ",49314241^49310331-";
chr19	juncbase	cassette	5903623	5897008	.	-	.	gene_id "cassette.407"; transcript_id "cassette.407"; gene_name "CUFF.2051"; flanks "5903623-,5897008^"; structure "0,1-2^"; splice_chain ",5901465-5901346^";
chr19	juncbase	alternative_acceptor	33882385	33892627	.	-	.	gene_id "alternative_acceptor.482"; transcript_id "alternative_acceptor.482"; gene_name "CUFF.2129"; flanks "33882385-,33892627^"; structure "1-,2-"; splice_chain "33887061-,33882385-";
chr19	juncbase	alternative_acceptor	20287618	20349097	.	-	.	gene_id "alternative_acceptor.483"; transcript_id "alternative_acceptor.483"; gene_name "CUFF.2112"; flanks "20287618-,20349097^"; structure "1-,2-"; splice_chain "20287618-,20243396-";
chr19	juncbase	alternative_acceptor	20339292	20349097	.	-	.	gene_id "alternative_acceptor.484"; transcript_id "alternative_acceptor.484"; gene_name "CUFF.2112"; flanks "20339292-,20349097^"; structure "1-,2-"; splice_chain "20339292-,20243396-";
chr19	juncbase	jcn_only_AD	33878796	33878387	.	-	.	gene_id "jcn_only_AD.778"; transcript_id "jcn_only_AD.778"; gene_name "CUFF.2129,CUFF.2177"; flanks "33878796-,33878387^"; structure "1^,2^"; splice_chain "33878796^,33878561^";
chr19	juncbase	intron_retention	17447843	17448817	.	+	.	gene_id "intron_retention.595"; transcript_id "intron_retention.595"; gene_name "CUFF.2104"; flanks "17447843-,17448817^"; structure "0,1^2-"; splice_chain ",17447843^17448817-";
chr19	juncbase	cassette	17445931	17448817	.	+	.	gene_id "cassette.408"; transcript_id "cassette.408"; gene_name "CUFF.2104"; flanks "17445931-,17448817^"; structure "0,1-2^"; splice_chain ",17447629-17448473^";
chr19	juncbase	alternative_donor	33977809	33968996	.	-	.	gene_id "alternative_donor.629"; transcript_id "alternative_donor.629"; gene_name ""; flanks "33977809-,33968996^"; structure "1^,2^"; splice_chain "33978156^,33977809^";
chr19	juncbase	alternative_donor	33980902	33968996	.	-	.	gene_id "alternative_donor.630"; transcript_id "alternative_donor.630"; gene_name ""; flanks "33980902-,33968996^"; structure "1^,2^"; splice_chain "33980902^,33978156^";
chr19	juncbase	jcn_only_AA	17448473	17448817	.	+	.	gene_id "jcn_only_AA.650"; transcript_id "jcn_only_AA.650"; gene_name "CUFF.2104"; flanks "17448473-,17448817^"; structure "1-,2-"; splice_chain "17448683-,17448817-";
chr19	juncbase	jcn_only_AA	17448473	17448708	.	+	.	gene_id "jcn_only_AA.651"; transcript_id "jcn_only_AA.651"; gene_name "CUFF.2104"; flanks "17448473-,17448708^"; structure "1-,2-"; splice_chain "17448683-,17448708-";
chr19	juncbase	cassette	6016101	6010262	.	-	.	gene_id "cassette.409"; transcript_id "cassette.409"; gene_name "CUFF.2051"; flanks "6016101-,6010262^"; structure "0,1-2^"; splice_chain ",6013116-6012997^";
chr19	juncbase	alternative_acceptor	4304758	4306021	.	+	.	gene_id "alternative_acceptor.485"; transcript_id "alternative_acceptor.485"; gene_name "CUFF.2048,CUFF.2155"; flanks "4304758-,4306021^"; structure "1-,2-"; splice_chain "4305943-,4306021-";
chr19	juncbase	alternative_acceptor	4304758	4305982	.	+	.	gene_id "alternative_acceptor.486"; transcript_id "alternative_acceptor.486"; gene_name "CUFF.2048,CUFF.2155"; flanks "4304758-,4305982^"; structure "1-,2-"; splice_chain "4305943-,4305982-";
chr19	juncbase	jcn_only_AD	16199930	16204346	.	+	.	gene_id "jcn_only_AD.779"; transcript_id "jcn_only_AD.779"; gene_name "CUFF.2093"; flanks "16199930-,16204346^"; structure "1^,2^"; splice_chain "16199930^,16203942^";
chr19	juncbase	cassette	55084902	55085543	.	+	.	gene_id "cassette.410"; transcript_id "cassette.410"; gene_name "CUFF.2187"; flanks "55084902-,55085543^"; structure "0,1-2^"; splice_chain ",55085165-55085379^";
chr19	juncbase	jcn_only_AA	40478151	40478369	.	+	.	gene_id "jcn_only_AA.652"; transcript_id "jcn_only_AA.652"; gene_name "CUFF.2141"; flanks "40478151-,40478369^"; structure "1-,2-"; splice_chain "40478276-,40478369-";
chr19	juncbase	jcn_only_AA	54648068	54649278	.	+	.	gene_id "jcn_only_AA.653"; transcript_id "jcn_only_AA.653"; gene_name "CUFF.2186"; flanks "54648068-,54649278^"; structure "1-,2-"; splice_chain "54649278-,54649331-";
chr19	juncbase	jcn_only_AA	54648068	54649334	.	+	.	gene_id "jcn_only_AA.654"; transcript_id "jcn_only_AA.654"; gene_name "CUFF.2186"; flanks "54648068-,54649334^"; structure "1-,2-"; splice_chain "54649331-,54649334-";
chr19	juncbase	alternative_donor	52271785	52271898	.	+	.	gene_id "alternative_donor.631"; transcript_id "alternative_donor.631"; gene_name "CUFF.2181"; flanks "52271785-,52271898^"; structure "1^,2^"; splice_chain "52265788^,52271785^";
chr19	juncbase	alternative_donor	52266770	52271898	.	+	.	gene_id "alternative_donor.632"; transcript_id "alternative_donor.632"; gene_name "CUFF.2181"; flanks "52266770-,52271898^"; structure "1^,2^"; splice_chain "52265788^,52266770^";
chr19	juncbase	alternative_donor	52264483	52271898	.	+	.	gene_id "alternative_donor.633"; transcript_id "alternative_donor.633"; gene_name "CUFF.2181"; flanks "52264483-,52271898^"; structure "1^,2^"; splice_chain "52264483^,52265788^";
chr19	juncbase	cassette	55087576	55098668	.	+	.	gene_id "cassette.411"; transcript_id "cassette.411"; gene_name "CUFF.2187"; flanks "55087576-,55098668^"; structure "0,1-2^"; splice_chain ",55088932-55089190^";
chr19	juncbase	cassette	8154983	8154554	.	-	.	gene_id "cassette.412"; transcript_id "cassette.412"; gene_name "CUFF.2064"; flanks "8154983-,8154554^"; structure "0,1-2^"; splice_chain ",8154843-8154778^";
chr19	juncbase	jcn_only_AD	52901153	52901620	.	+	.	gene_id "jcn_only_AD.780"; transcript_id "jcn_only_AD.780"; gene_name "CUFF.2182"; flanks "52901153-,52901620^"; structure "1^,2^"; splice_chain "52901153^,52901273^";
chr19	juncbase	jcn_only_AD	52901157	52901620	.	+	.	gene_id "jcn_only_AD.781"; transcript_id "jcn_only_AD.781"; gene_name "CUFF.2182"; flanks "52901157-,52901620^"; structure "1^,2^"; splice_chain "52901157^,52901273^";
chr19	juncbase	jcn_only_AD	6217965	6216524	.	-	.	gene_id "jcn_only_AD.782"; transcript_id "jcn_only_AD.782"; gene_name "CUFF.2052"; flanks "6217965-,6216524^"; structure "1^,2^"; splice_chain "6217965^,6216747^";
chr19	juncbase	jcn_only_AA	17581516	17594691	.	+	.	gene_id "jcn_only_AA.655"; transcript_id "jcn_only_AA.655"; gene_name "CUFF.2103"; flanks "17581516-,17594691^"; structure "1-,2-"; splice_chain "17594691-,17598269-";
chr19	juncbase	jcn_only_AA	17581516	17597372	.	+	.	gene_id "jcn_only_AA.656"; transcript_id "jcn_only_AA.656"; gene_name "CUFF.2103"; flanks "17581516-,17597372^"; structure "1-,2-"; splice_chain "17597372-,17598269-";
chr19	juncbase	jcn_only_AA	7075116	7075687	.	+	.	gene_id "jcn_only_AA.657"; transcript_id "jcn_only_AA.657"; gene_name "CUFF.2182"; flanks "7075116-,7075687^"; structure "1-,2-"; splice_chain "7075666-,7075687-";
chr19	juncbase	jcn_only_AA	33904548	33953901	.	-	.	gene_id "jcn_only_AA.658"; transcript_id "jcn_only_AA.658"; gene_name "CUFF.2129"; flanks "33904548-,33953901^"; structure "1-,2-"; splice_chain "33904549-,33904548-";
chr19	juncbase	jcn_only_AA	17448473	17448817	.	+	.	gene_id "jcn_only_AA.659"; transcript_id "jcn_only_AA.659"; gene_name "CUFF.2104"; flanks "17448473-,17448817^"; structure "1-,2-"; splice_chain "17448708-,17448817-";
chr19	juncbase	jcn_only_AA	17448473	17448683	.	+	.	gene_id "jcn_only_AA.660"; transcript_id "jcn_only_AA.660"; gene_name "CUFF.2104"; flanks "17448473-,17448683^"; structure "1-,2-"; splice_chain "17448683-,17448708-";
chr19	juncbase	intron_retention	44764091	44768467	.	+	.	gene_id "intron_retention.596"; transcript_id "intron_retention.596"; gene_name ""; flanks "44764091-,44768467^"; structure "0,1^2-"; splice_chain ",44764091^44768467-";
chr19	juncbase	intron_retention	16212219	16212870	.	+	.	gene_id "intron_retention.597"; transcript_id "intron_retention.597"; gene_name "CUFF.2093"; flanks "16212219-,16212870^"; structure "0,1^2-"; splice_chain ",16212219^16212870-";
chr19	juncbase	alternative_donor	39926298	39924401	.	-	.	gene_id "alternative_donor.634"; transcript_id "alternative_donor.634"; gene_name "CUFF.2139"; flanks "39926298-,39924401^"; structure "1^,2^"; splice_chain "39926298^,39926247^";
chr19	juncbase	alternative_donor	1438427	1438806	.	+	.	gene_id "alternative_donor.635"; transcript_id "alternative_donor.635"; gene_name "CUFF.2044"; flanks "1438427-,1438806^"; structure "1^,2^"; splice_chain "1438427^,1438579^";
chr19	juncbase	jcn_only_AD	52271785	52271898	.	+	.	gene_id "jcn_only_AD.783"; transcript_id "jcn_only_AD.783"; gene_name "CUFF.2181"; flanks "52271785-,52271898^"; structure "1^,2^"; splice_chain "52266770^,52271785^";
chr19	juncbase	jcn_only_AD	52264483	52271898	.	+	.	gene_id "jcn_only_AD.784"; transcript_id "jcn_only_AD.784"; gene_name "CUFF.2181"; flanks "52264483-,52271898^"; structure "1^,2^"; splice_chain "52264483^,52266770^";
chr19	juncbase	jcn_only_AD	52265788	52271898	.	+	.	gene_id "jcn_only_AD.785"; transcript_id "jcn_only_AD.785"; gene_name "CUFF.2181"; flanks "52265788-,52271898^"; structure "1^,2^"; splice_chain "52265788^,52266770^";
chr19	juncbase	intron_retention	44771114	44777458	.	+	.	gene_id "intron_retention.598"; transcript_id "intron_retention.598"; gene_name "CUFF.2155"; flanks "44771114-,44777458^"; structure "0,1^2-"; splice_chain ",44771114^44777458-";
chr19	juncbase	alternative_acceptor	17611685	17615264	.	+	.	gene_id "alternative_acceptor.487"; transcript_id "alternative_acceptor.487"; gene_name "CUFF.2072,CUFF.2103"; flanks "17611685-,17615264^"; structure "1-,2-"; splice_chain "17612082-,17615264-";
chr19	juncbase	jcn_only_AD	6148242	6047515	.	-	.	gene_id "jcn_only_AD.786"; transcript_id "jcn_only_AD.786"; gene_name ""; flanks "6148242-,6047515^"; structure "1^,2^"; splice_chain "6148242^,6110404^";
chr19	juncbase	jcn_only_AD	6049147	6047515	.	-	.	gene_id "jcn_only_AD.787"; transcript_id "jcn_only_AD.787"; gene_name ""; flanks "6049147-,6047515^"; structure "1^,2^"; splice_chain "6110404^,6049147^";
chr19	juncbase	jcn_only_AD	6057173	6047515	.	-	.	gene_id "jcn_only_AD.788"; transcript_id "jcn_only_AD.788"; gene_name ""; flanks "6057173-,6047515^"; structure "1^,2^"; splice_chain "6110404^,6057173^";
chr19	juncbase	jcn_only_AD	6072016	6047515	.	-	.	gene_id "jcn_only_AD.789"; transcript_id "jcn_only_AD.789"; gene_name ""; flanks "6072016-,6047515^"; structure "1^,2^"; splice_chain "6110404^,6072016^";
chr19	juncbase	jcn_only_AD	17447966	17448683	.	+	.	gene_id "jcn_only_AD.790"; transcript_id "jcn_only_AD.790"; gene_name "CUFF.2104"; flanks "17447966-,17448683^"; structure "1^,2^"; splice_chain "17447966^,17448473^";
chr19	juncbase	intron_retention	49314241	49311493	.	-	.	gene_id "intron_retention.599"; transcript_id "intron_retention.599"; gene_name "CUFF.2163"; flanks "49314241-,49311493^"; structure "0,1^2-"; splice_chain ",49314241^49311493-";
chr19	juncbase	jcn_only_AA	20339292	20349097	.	-	.	gene_id "jcn_only_AA.661"; transcript_id "jcn_only_AA.661"; gene_name "CUFF.2112"; flanks "20339292-,20349097^"; structure "1-,2-"; splice_chain "20339292-,20287618-";
chr19	juncbase	jcn_only_AA	20243396	20349097	.	-	.	gene_id "jcn_only_AA.662"; transcript_id "jcn_only_AA.662"; gene_name "CUFF.2112"; flanks "20243396-,20349097^"; structure "1-,2-"; splice_chain "20287618-,20243396-";
chr19	juncbase	intron_retention	41938220	41937793	.	-	.	gene_id "intron_retention.600"; transcript_id "intron_retention.600"; gene_name ""; flanks "41938220-,41937793^"; structure "0,1^2-"; splice_chain ",41938220^41937793-";
chr19	juncbase	alternative_acceptor	54648068	54649278	.	+	.	gene_id "alternative_acceptor.488"; transcript_id "alternative_acceptor.488"; gene_name "CUFF.2186"; flanks "54648068-,54649278^"; structure "1-,2-"; splice_chain "54649278-,54649331-";
chr19	juncbase	alternative_acceptor	54648068	54649334	.	+	.	gene_id "alternative_acceptor.489"; transcript_id "alternative_acceptor.489"; gene_name "CUFF.2186"; flanks "54648068-,54649334^"; structure "1-,2-"; splice_chain "54649331-,54649334-";
chr19	juncbase	intron_retention	14877047	14876616	.	-	.	gene_id "intron_retention.601"; transcript_id "intron_retention.601"; gene_name ""; flanks "14877047-,14876616^"; structure "0,1^2-"; splice_chain ",14877047^14876616-";
chr19	juncbase	jcn_only_AD	17445920	17448817	.	+	.	gene_id "jcn_only_AD.791"; transcript_id "jcn_only_AD.791"; gene_name "CUFF.2104"; flanks "17445920-,17448817^"; structure "1^,2^"; splice_chain "17445920^,17448078^";
chr19	juncbase	jcn_only_AD	17448385	17448817	.	+	.	gene_id "jcn_only_AD.792"; transcript_id "jcn_only_AD.792"; gene_name "CUFF.2104"; flanks "17448385-,17448817^"; structure "1^,2^"; splice_chain "17448078^,17448385^";
chr19	juncbase	jcn_only_AD	17447843	17448817	.	+	.	gene_id "jcn_only_AD.793"; transcript_id "jcn_only_AD.793"; gene_name "CUFF.2104"; flanks "17447843-,17448817^"; structure "1^,2^"; splice_chain "17447843^,17448078^";
chr19	juncbase	jcn_only_AD	17448456	17448817	.	+	.	gene_id "jcn_only_AD.794"; transcript_id "jcn_only_AD.794"; gene_name "CUFF.2104"; flanks "17448456-,17448817^"; structure "1^,2^"; splice_chain "17448078^,17448456^";
chr19	juncbase	jcn_only_AD	17448473	17448817	.	+	.	gene_id "jcn_only_AD.795"; transcript_id "jcn_only_AD.795"; gene_name "CUFF.2104"; flanks "17448473-,17448817^"; structure "1^,2^"; splice_chain "17448078^,17448473^";
chr19	juncbase	jcn_only_AD	17447966	17448817	.	+	.	gene_id "jcn_only_AD.796"; transcript_id "jcn_only_AD.796"; gene_name "CUFF.2104"; flanks "17447966-,17448817^"; structure "1^,2^"; splice_chain "17447966^,17448078^";
chr19	juncbase	intron_retention	50305398	50306206	.	+	.	gene_id "intron_retention.602"; transcript_id "intron_retention.602"; gene_name "CUFF.2167"; flanks "50305398-,50306206^"; structure "0,1^2-"; splice_chain ",50305398^50306206-";
chr19	juncbase	intron_retention	1438427	1438806	.	+	.	gene_id "intron_retention.603"; transcript_id "intron_retention.603"; gene_name "CUFF.2044"; flanks "1438427-,1438806^"; structure "0,1^2-"; splice_chain ",1438427^1438806-";
chr19	juncbase	cassette	55087576	55098668	.	+	.	gene_id "cassette.413"; transcript_id "cassette.413"; gene_name "CUFF.2187"; flanks "55087576-,55098668^"; structure "0,1-2^"; splice_chain ",55098477-55098527^";
chr19	juncbase	alternative_acceptor	17448473	17448683	.	+	.	gene_id "alternative_acceptor.490"; transcript_id "alternative_acceptor.490"; gene_name ""; flanks "17448473-,17448683^"; structure "1-,2-"; splice_chain "17448683-,17448817-";
chr19	juncbase	alternative_acceptor	17448473	17448708	.	+	.	gene_id "alternative_acceptor.491"; transcript_id "alternative_acceptor.491"; gene_name ""; flanks "17448473-,17448708^"; structure "1-,2-"; splice_chain "17448708-,17448817-";
chr19	juncbase	jcn_only_AA	21637274	21639263	.	-	.	gene_id "jcn_only_AA.663"; transcript_id "jcn_only_AA.663"; gene_name "CUFF.2114"; flanks "21637274-,21639263^"; structure "1-,2-"; splice_chain "21638406-,21637274-";
chr19	juncbase	intron_retention	50306262	50306364	.	+	.	gene_id "intron_retention.604"; transcript_id "intron_retention.604"; gene_name "CUFF.2167"; flanks "50306262-,50306364^"; structure "0,1^2-"; splice_chain ",50306262^50306364-";
chr19	juncbase	intron_retention	40904527	40903877	.	-	.	gene_id "intron_retention.605"; transcript_id "intron_retention.605"; gene_name "CUFF.2142"; flanks "40904527-,40903877^"; structure "0,1^2-"; splice_chain ",40904527^40903877-";
chr19	juncbase	alternative_acceptor	11468415	11470147	.	+	.	gene_id "alternative_acceptor.492"; transcript_id "alternative_acceptor.492"; gene_name ""; flanks "11468415-,11470147^"; structure "1-,2-"; splice_chain "11470147-,11470208-";
chr19	juncbase	alternative_acceptor	11468415	11470283	.	+	.	gene_id "alternative_acceptor.493"; transcript_id "alternative_acceptor.493"; gene_name ""; flanks "11468415-,11470283^"; structure "1-,2-"; splice_chain "11470208-,11470283-";
chr19	juncbase	jcn_only_AA	17448473	17448683	.	+	.	gene_id "jcn_only_AA.664"; transcript_id "jcn_only_AA.664"; gene_name ""; flanks "17448473-,17448683^"; structure "1-,2-"; splice_chain "17448683-,17448817-";
chr19	juncbase	jcn_only_AA	17448473	17448708	.	+	.	gene_id "jcn_only_AA.665"; transcript_id "jcn_only_AA.665"; gene_name ""; flanks "17448473-,17448708^"; structure "1-,2-"; splice_chain "17448708-,17448817-";
chr19	juncbase	jcn_only_AD	17445920	17448817	.	+	.	gene_id "jcn_only_AD.797"; transcript_id "jcn_only_AD.797"; gene_name "CUFF.2104"; flanks "17445920-,17448817^"; structure "1^,2^"; splice_chain "17445920^,17448385^";
chr19	juncbase	jcn_only_AD	17447843	17448817	.	+	.	gene_id "jcn_only_AD.798"; transcript_id "jcn_only_AD.798"; gene_name "CUFF.2104"; flanks "17447843-,17448817^"; structure "1^,2^"; splice_chain "17447843^,17448385^";
chr19	juncbase	jcn_only_AD	17448456	17448817	.	+	.	gene_id "jcn_only_AD.799"; transcript_id "jcn_only_AD.799"; gene_name "CUFF.2104"; flanks "17448456-,17448817^"; structure "1^,2^"; splice_chain "17448385^,17448456^";
chr19	juncbase	jcn_only_AD	17448078	17448817	.	+	.	gene_id "jcn_only_AD.800"; transcript_id "jcn_only_AD.800"; gene_name "CUFF.2104"; flanks "17448078-,17448817^"; structure "1^,2^"; splice_chain "17448078^,17448385^";
chr19	juncbase	jcn_only_AD	17448473	17448817	.	+	.	gene_id "jcn_only_AD.801"; transcript_id "jcn_only_AD.801"; gene_name "CUFF.2104"; flanks "17448473-,17448817^"; structure "1^,2^"; splice_chain "17448385^,17448473^";
chr19	juncbase	jcn_only_AD	17447966	17448817	.	+	.	gene_id "jcn_only_AD.802"; transcript_id "jcn_only_AD.802"; gene_name "CUFF.2104"; flanks "17447966-,17448817^"; structure "1^,2^"; splice_chain "17447966^,17448385^";
chr19	juncbase	cassette	11541719	11537860	.	-	.	gene_id "cassette.414"; transcript_id "cassette.414"; gene_name "CUFF.2074"; flanks "11541719-,11537860^"; structure "0,1-2^"; splice_chain ",11541596-11541519^";
chr19	juncbase	jcn_only_AA	4317277	4318381	.	+	.	gene_id "jcn_only_AA.666"; transcript_id "jcn_only_AA.666"; gene_name ""; flanks "4317277-,4318381^"; structure "1-,2-"; splice_chain "4318343-,4318381-";
chr19	juncbase	intron_retention	39924162	39924058	.	-	.	gene_id "intron_retention.606"; transcript_id "intron_retention.606"; gene_name "CUFF.2139"; flanks "39924162-,39924058^"; structure "0,1^2-"; splice_chain ",39924162^39924058-";
chr19	juncbase	alternative_donor	14887538	14885118	.	-	.	gene_id "alternative_donor.636"; transcript_id "alternative_donor.636"; gene_name "CUFF.2092"; flanks "14887538-,14885118^"; structure "1^,2^"; splice_chain "14887538^,14887216^";
chr19	juncbase	cassette	51485583	51483743	.	-	.	gene_id "cassette.415"; transcript_id "cassette.415"; gene_name "CUFF.2178"; flanks "51485583-,51483743^"; structure "0,1-2^"; splice_chain ",51485170-51485023^";
chr19	juncbase	jcn_only_AD	4323143	4323345	.	+	.	gene_id "jcn_only_AD.803"; transcript_id "jcn_only_AD.803"; gene_name "CUFF.2048"; flanks "4323143-,4323345^"; structure "1^,2^"; splice_chain "4323143^,4323210^";
chr19	juncbase	jcn_only_AD	4323234	4323345	.	+	.	gene_id "jcn_only_AD.804"; transcript_id "jcn_only_AD.804"; gene_name "CUFF.2048"; flanks "4323234-,4323345^"; structure "1^,2^"; splice_chain "4323210^,4323234^";
chr19	juncbase	alternative_donor	33977809	33968996	.	-	.	gene_id "alternative_donor.637"; transcript_id "alternative_donor.637"; gene_name "CUFF.2129"; flanks "33977809-,33968996^"; structure "1^,2^"; splice_chain "33980902^,33977809^";
chr19	juncbase	alternative_donor	33978156	33968996	.	-	.	gene_id "alternative_donor.638"; transcript_id "alternative_donor.638"; gene_name "CUFF.2129"; flanks "33978156-,33968996^"; structure "1^,2^"; splice_chain "33980902^,33978156^";
chr19	juncbase	jcn_only_AD	50285226	50296293	.	+	.	gene_id "jcn_only_AD.805"; transcript_id "jcn_only_AD.805"; gene_name "CUFF.2167"; flanks "50285226-,50296293^"; structure "1^,2^"; splice_chain "50285226^,50285227^";
chr19	juncbase	intron_retention	16655075	16654416	.	-	.	gene_id "intron_retention.607"; transcript_id "intron_retention.607"; gene_name "CUFF.2098"; flanks "16655075-,16654416^"; structure "0,1^2-"; splice_chain ",16655075^16654416-";
chr19	juncbase	intron_retention	39924134	39924058	.	-	.	gene_id "intron_retention.608"; transcript_id "intron_retention.608"; gene_name "CUFF.2139"; flanks "39924134-,39924058^"; structure "0,1^2-"; splice_chain ",39924134^39924058-";
chr19	juncbase	cassette	55085379	55085768	.	+	.	gene_id "cassette.416"; transcript_id "cassette.416"; gene_name "CUFF.2187"; flanks "55085379-,55085768^"; structure "0,1-2^"; splice_chain ",55085543-55085578^";
chr19	juncbase	intron_retention	17449064	17449174	.	+	.	gene_id "intron_retention.609"; transcript_id "intron_retention.609"; gene_name "CUFF.2104"; flanks "17449064-,17449174^"; structure "0,1^2-"; splice_chain ",17449064^17449174-";
chr19	juncbase	intron_retention	18120503	18120592	.	+	.	gene_id "intron_retention.610"; transcript_id "intron_retention.610"; gene_name "CUFF.2106"; flanks "18120503-,18120592^"; structure "0,1^2-"; splice_chain ",18120503^18120592-";
chr19	juncbase	alternative_acceptor	54657577	54657681	.	+	.	gene_id "alternative_acceptor.494"; transcript_id "alternative_acceptor.494"; gene_name ""; flanks "54657577-,54657681^"; structure "1-,2-"; splice_chain "54657681-,54659047-";
chr19	juncbase	alternative_acceptor	54657577	54658996	.	+	.	gene_id "alternative_acceptor.495"; transcript_id "alternative_acceptor.495"; gene_name ""; flanks "54657577-,54658996^"; structure "1-,2-"; splice_chain "54658996-,54659047-";
chr19	juncbase	jcn_only_AD	33977809	33968996	.	-	.	gene_id "jcn_only_AD.806"; transcript_id "jcn_only_AD.806"; gene_name "CUFF.2129"; flanks "33977809-,33968996^"; structure "1^,2^"; splice_chain "33980902^,33977809^";
chr19	juncbase	jcn_only_AD	33978156	33968996	.	-	.	gene_id "jcn_only_AD.807"; transcript_id "jcn_only_AD.807"; gene_name "CUFF.2129"; flanks "33978156-,33968996^"; structure "1^,2^"; splice_chain "33980902^,33978156^";
chr19	juncbase	cassette	8145887	8140074	.	-	.	gene_id "cassette.417"; transcript_id "cassette.417"; gene_name "CUFF.2064"; flanks "8145887-,8140074^"; structure "0,1-2^"; splice_chain ",8140295-8140167^";
chr19	juncbase	alternative_donor	17445920	17448817	.	+	.	gene_id "alternative_donor.639"; transcript_id "alternative_donor.639"; gene_name "CUFF.2104"; flanks "17445920-,17448817^"; structure "1^,2^"; splice_chain "17445920^,17447966^";
chr19	juncbase	alternative_donor	17448385	17448817	.	+	.	gene_id "alternative_donor.640"; transcript_id "alternative_donor.640"; gene_name "CUFF.2104"; flanks "17448385-,17448817^"; structure "1^,2^"; splice_chain "17447966^,17448385^";
chr19	juncbase	alternative_donor	17447843	17448817	.	+	.	gene_id "alternative_donor.641"; transcript_id "alternative_donor.641"; gene_name "CUFF.2104"; flanks "17447843-,17448817^"; structure "1^,2^"; splice_chain "17447843^,17447966^";
chr19	juncbase	alternative_donor	17448456	17448817	.	+	.	gene_id "alternative_donor.642"; transcript_id "alternative_donor.642"; gene_name "CUFF.2104"; flanks "17448456-,17448817^"; structure "1^,2^"; splice_chain "17447966^,17448456^";
chr19	juncbase	alternative_donor	17448078	17448817	.	+	.	gene_id "alternative_donor.643"; transcript_id "alternative_donor.643"; gene_name "CUFF.2104"; flanks "17448078-,17448817^"; structure "1^,2^"; splice_chain "17447966^,17448078^";
chr19	juncbase	alternative_donor	17448473	17448817	.	+	.	gene_id "alternative_donor.644"; transcript_id "alternative_donor.644"; gene_name "CUFF.2104"; flanks "17448473-,17448817^"; structure "1^,2^"; splice_chain "17447966^,17448473^";
chr19	juncbase	jcn_only_AA	6192040	6199487	.	-	.	gene_id "jcn_only_AA.667"; transcript_id "jcn_only_AA.667"; gene_name ""; flanks "6192040-,6199487^"; structure "1-,2-"; splice_chain "6192040-,6176454-";
chr19	juncbase	jcn_only_AA	6148340	6199487	.	-	.	gene_id "jcn_only_AA.668"; transcript_id "jcn_only_AA.668"; gene_name ""; flanks "6148340-,6199487^"; structure "1-,2-"; splice_chain "6176454-,6148340-";
chr19	juncbase	intron_retention	50305398	50305791	.	+	.	gene_id "intron_retention.611"; transcript_id "intron_retention.611"; gene_name "CUFF.2167"; flanks "50305398-,50305791^"; structure "0,1^2-"; splice_chain ",50305398^50305791-";
chr19	juncbase	intron_retention	50306446	50306544	.	+	.	gene_id "intron_retention.612"; transcript_id "intron_retention.612"; gene_name "CUFF.2167"; flanks "50306446-,50306544^"; structure "0,1^2-"; splice_chain ",50306446^50306544-";
chr19	juncbase	jcn_only_AA	4304758	4305982	.	+	.	gene_id "jcn_only_AA.669"; transcript_id "jcn_only_AA.669"; gene_name "CUFF.2048"; flanks "4304758-,4305982^"; structure "1-,2-"; splice_chain "4305982-,4306021-";
chr19	juncbase	jcn_only_AA	4304758	4305943	.	+	.	gene_id "jcn_only_AA.670"; transcript_id "jcn_only_AA.670"; gene_name "CUFF.2048"; flanks "4304758-,4305943^"; structure "1-,2-"; splice_chain "4305943-,4306021-";
chr19	juncbase	intron_retention	12917614	12917822	.	+	.	gene_id "intron_retention.613"; transcript_id "intron_retention.613"; gene_name "CUFF.2081"; flanks "12917614-,12917822^"; structure "0,1^2-"; splice_chain ",12917614^12917822-";
chr19	juncbase	jcn_only_AA	1438427	1438810	.	+	.	gene_id "jcn_only_AA.671"; transcript_id "jcn_only_AA.671"; gene_name "CUFF.2044"; flanks "1438427-,1438810^"; structure "1-,2-"; splice_chain "1438806-,1438810-";
chr19	juncbase	intron_retention	17445920	17448817	.	+	.	gene_id "intron_retention.614"; transcript_id "intron_retention.614"; gene_name ""; flanks "17445920-,17448817^"; structure "0,1^2-"; splice_chain ",17445920^17448817-";
chr19	juncbase	intron_retention	16198907	16199855	.	+	.	gene_id "intron_retention.615"; transcript_id "intron_retention.615"; gene_name "CUFF.2093"; flanks "16198907-,16199855^"; structure "0,1^2-"; splice_chain ",16198907^16199855-";
chr19	juncbase	intron_retention	1438891	1439960	.	+	.	gene_id "intron_retention.616"; transcript_id "intron_retention.616"; gene_name ""; flanks "1438891-,1439960^"; structure "0,1^2-"; splice_chain ",1438891^1439960-";
chr19	juncbase	alternative_donor	17445920	17448817	.	+	.	gene_id "alternative_donor.645"; transcript_id "alternative_donor.645"; gene_name "CUFF.2104"; flanks "17445920-,17448817^"; structure "1^,2^"; splice_chain "17445920^,17448078^";
chr19	juncbase	alternative_donor	17448385	17448817	.	+	.	gene_id "alternative_donor.646"; transcript_id "alternative_donor.646"; gene_name "CUFF.2104"; flanks "17448385-,17448817^"; structure "1^,2^"; splice_chain "17448078^,17448385^";
chr19	juncbase	alternative_donor	17447843	17448817	.	+	.	gene_id "alternative_donor.647"; transcript_id "alternative_donor.647"; gene_name "CUFF.2104"; flanks "17447843-,17448817^"; structure "1^,2^"; splice_chain "17447843^,17448078^";
chr19	juncbase	alternative_donor	17448456	17448817	.	+	.	gene_id "alternative_donor.648"; transcript_id "alternative_donor.648"; gene_name "CUFF.2104"; flanks "17448456-,17448817^"; structure "1^,2^"; splice_chain "17448078^,17448456^";
chr19	juncbase	alternative_donor	17448473	17448817	.	+	.	gene_id "alternative_donor.649"; transcript_id "alternative_donor.649"; gene_name "CUFF.2104"; flanks "17448473-,17448817^"; structure "1^,2^"; splice_chain "17448078^,17448473^";
chr19	juncbase	alternative_donor	17447966	17448817	.	+	.	gene_id "alternative_donor.650"; transcript_id "alternative_donor.650"; gene_name "CUFF.2104"; flanks "17447966-,17448817^"; structure "1^,2^"; splice_chain "17447966^,17448078^";
chr19	juncbase	intron_retention	5896464	5894865	.	-	.	gene_id "intron_retention.617"; transcript_id "intron_retention.617"; gene_name "CUFF.2051"; flanks "5896464-,5894865^"; structure "0,1^2-"; splice_chain ",5896464^5894865-";
chr19	juncbase	alternative_donor	11474495	11474837	.	+	.	gene_id "alternative_donor.651"; transcript_id "alternative_donor.651"; gene_name "CUFF.2072"; flanks "11474495-,11474837^"; structure "1^,2^"; splice_chain "11474495^,11474511^";
chr19	juncbase	intron_retention	6211309	6211076	.	-	.	gene_id "intron_retention.618"; transcript_id "intron_retention.618"; gene_name "CUFF.2056"; flanks "6211309-,6211076^"; structure "0,1^2-"; splice_chain ",6211309^6211076-";
chr19	juncbase	cassette	16186982	16197233	.	+	.	gene_id "cassette.418"; transcript_id "cassette.418"; gene_name "CUFF.2093"; flanks "16186982-,16197233^"; structure "0,1-2^"; splice_chain ",16192723-16192856^";
chr19	juncbase	jcn_only_AA	52901157	52901707	.	+	.	gene_id "jcn_only_AA.672"; transcript_id "jcn_only_AA.672"; gene_name "CUFF.2155"; flanks "52901157-,52901707^"; structure "1-,2-"; splice_chain "52901620-,52901707-";
chr19	juncbase	jcn_only_AD	17448385	17448817	.	+	.	gene_id "jcn_only_AD.808"; transcript_id "jcn_only_AD.808"; gene_name "CUFF.2104"; flanks "17448385-,17448817^"; structure "1^,2^"; splice_chain "17445920^,17448385^";
chr19	juncbase	jcn_only_AD	17447843	17448817	.	+	.	gene_id "jcn_only_AD.809"; transcript_id "jcn_only_AD.809"; gene_name "CUFF.2104"; flanks "17447843-,17448817^"; structure "1^,2^"; splice_chain "17445920^,17447843^";
chr19	juncbase	jcn_only_AD	17448456	17448817	.	+	.	gene_id "jcn_only_AD.810"; transcript_id "jcn_only_AD.810"; gene_name "CUFF.2104"; flanks "17448456-,17448817^"; structure "1^,2^"; splice_chain "17445920^,17448456^";
chr19	juncbase	jcn_only_AD	17448078	17448817	.	+	.	gene_id "jcn_only_AD.811"; transcript_id "jcn_only_AD.811"; gene_name "CUFF.2104"; flanks "17448078-,17448817^"; structure "1^,2^"; splice_chain "17445920^,17448078^";
chr19	juncbase	jcn_only_AD	17448473	17448817	.	+	.	gene_id "jcn_only_AD.812"; transcript_id "jcn_only_AD.812"; gene_name "CUFF.2104"; flanks "17448473-,17448817^"; structure "1^,2^"; splice_chain "17445920^,17448473^";
chr19	juncbase	jcn_only_AD	17447966	17448817	.	+	.	gene_id "jcn_only_AD.813"; transcript_id "jcn_only_AD.813"; gene_name "CUFF.2104"; flanks "17447966-,17448817^"; structure "1^,2^"; splice_chain "17445920^,17447966^";
chr19	juncbase	alternative_donor	41945379	41944319	.	-	.	gene_id "alternative_donor.652"; transcript_id "alternative_donor.652"; gene_name "CUFF.2148"; flanks "41945379-,41944319^"; structure "1^,2^"; splice_chain "41946386^,41945379^";
chr19	juncbase	alternative_donor	41945787	41944319	.	-	.	gene_id "alternative_donor.653"; transcript_id "alternative_donor.653"; gene_name "CUFF.2148"; flanks "41945787-,41944319^"; structure "1^,2^"; splice_chain "41946386^,41945787^";
chr19	juncbase	jcn_only_AA	17611685	17615264	.	+	.	gene_id "jcn_only_AA.673"; transcript_id "jcn_only_AA.673"; gene_name "CUFF.2072,CUFF.2103"; flanks "17611685-,17615264^"; structure "1-,2-"; splice_chain "17612082-,17615264-";
chr19	juncbase	cassette	51487107	51485170	.	-	.	gene_id "cassette.419"; transcript_id "cassette.419"; gene_name "CUFF.2178"; flanks "51487107-,51485170^"; structure "0,1-2^"; splice_chain ",51485713-51485583^";
chr19	juncbase	alternative_donor	33967986	33954968	.	-	.	gene_id "alternative_donor.654"; transcript_id "alternative_donor.654"; gene_name "CUFF.2129"; flanks "33967986-,33954968^"; structure "1^,2^"; splice_chain "33968953^,33967986^";
chr19	juncbase	alternative_donor	33968952	33954968	.	-	.	gene_id "alternative_donor.655"; transcript_id "alternative_donor.655"; gene_name "CUFF.2129"; flanks "33968952-,33954968^"; structure "1^,2^"; splice_chain "33968953^,33968952^";
chr19	juncbase	jcn_only_AD	17445920	17448817	.	+	.	gene_id "jcn_only_AD.814"; transcript_id "jcn_only_AD.814"; gene_name "CUFF.2104"; flanks "17445920-,17448817^"; structure "1^,2^"; splice_chain "17445920^,17448473^";
chr19	juncbase	jcn_only_AD	17448385	17448817	.	+	.	gene_id "jcn_only_AD.815"; transcript_id "jcn_only_AD.815"; gene_name "CUFF.2104"; flanks "17448385-,17448817^"; structure "1^,2^"; splice_chain "17448385^,17448473^";
chr19	juncbase	jcn_only_AD	17447843	17448817	.	+	.	gene_id "jcn_only_AD.816"; transcript_id "jcn_only_AD.816"; gene_name "CUFF.2104"; flanks "17447843-,17448817^"; structure "1^,2^"; splice_chain "17447843^,17448473^";
chr19	juncbase	jcn_only_AD	17448456	17448817	.	+	.	gene_id "jcn_only_AD.817"; transcript_id "jcn_only_AD.817"; gene_name "CUFF.2104"; flanks "17448456-,17448817^"; structure "1^,2^"; splice_chain "17448456^,17448473^";
chr19	juncbase	jcn_only_AD	17448078	17448817	.	+	.	gene_id "jcn_only_AD.818"; transcript_id "jcn_only_AD.818"; gene_name "CUFF.2104"; flanks "17448078-,17448817^"; structure "1^,2^"; splice_chain "17448078^,17448473^";
chr19	juncbase	jcn_only_AD	17447966	17448817	.	+	.	gene_id "jcn_only_AD.819"; transcript_id "jcn_only_AD.819"; gene_name "CUFF.2104"; flanks "17447966-,17448817^"; structure "1^,2^"; splice_chain "17447966^,17448473^";
chr19	juncbase	alternative_donor	51535132	51534177	.	-	.	gene_id "alternative_donor.656"; transcript_id "alternative_donor.656"; gene_name "CUFF.2139,CUFF.2177"; flanks "51535132-,51534177^"; structure "1^,2^"; splice_chain "51535132^,51535036^";
chr19	juncbase	intron_retention	50308833	50308918	.	+	.	gene_id "intron_retention.619"; transcript_id "intron_retention.619"; gene_name "CUFF.2167"; flanks "50308833-,50308918^"; structure "0,1^2-"; splice_chain ",50308833^50308918-";
chr19	juncbase	jcn_only_AD	44764361	44768467	.	+	.	gene_id "jcn_only_AD.820"; transcript_id "jcn_only_AD.820"; gene_name "CUFF.2155"; flanks "44764361-,44768467^"; structure "1^,2^"; splice_chain "44764155^,44764361^";
chr19	juncbase	jcn_only_AD	44764091	44768467	.	+	.	gene_id "jcn_only_AD.821"; transcript_id "jcn_only_AD.821"; gene_name "CUFF.2155"; flanks "44764091-,44768467^"; structure "1^,2^"; splice_chain "44764091^,44764155^";
chr19	juncbase	jcn_only_AA	20236318	20243270	.	-	.	gene_id "jcn_only_AA.674"; transcript_id "jcn_only_AA.674"; gene_name "CUFF.2112"; flanks "20236318-,20243270^"; structure "1-,2-"; splice_chain "20236592-,20236318-";
chr19	juncbase	cassette	41356152	41354668	.	-	.	gene_id "cassette.420"; transcript_id "cassette.420"; gene_name "CUFF.2146"; flanks "41356152-,41354668^"; structure "0,1-2^"; splice_chain ",41355885-41355723^";
chr19	juncbase	intron_retention	52917621	52918377	.	+	.	gene_id "intron_retention.620"; transcript_id "intron_retention.620"; gene_name "CUFF.2182"; flanks "52917621-,52918377^"; structure "0,1^2-"; splice_chain ",52917621^52918377-";
chr19	juncbase	jcn_only_AA	11541840	11545594	.	-	.	gene_id "jcn_only_AA.675"; transcript_id "jcn_only_AA.675"; gene_name "CUFF.2074"; flanks "11541840-,11545594^"; structure "1-,2-"; splice_chain "11545351-,11541840-";
chr19	juncbase	jcn_only_AD	35642376	35642536	.	+	.	gene_id "jcn_only_AD.822"; transcript_id "jcn_only_AD.822"; gene_name "CUFF.2130"; flanks "35642376-,35642536^"; structure "1^,2^"; splice_chain "35642376^,35642385^";
chr19	juncbase	alternative_acceptor	44771114	44777458	.	+	.	gene_id "alternative_acceptor.496"; transcript_id "alternative_acceptor.496"; gene_name "CUFF.2155"; flanks "44771114-,44777458^"; structure "1-,2-"; splice_chain "44771533-,44777458-";
chr19	juncbase	alternative_acceptor	44771114	44777052	.	+	.	gene_id "alternative_acceptor.497"; transcript_id "alternative_acceptor.497"; gene_name "CUFF.2155"; flanks "44771114-,44777052^"; structure "1-,2-"; splice_chain "44771533-,44777052-";
chr19	juncbase	alternative_acceptor	1438891	1440018	.	+	.	gene_id "alternative_acceptor.498"; transcript_id "alternative_acceptor.498"; gene_name "CUFF.2044"; flanks "1438891-,1440018^"; structure "1-,2-"; splice_chain "1439715-,1440018-";
chr19	juncbase	alternative_acceptor	1438891	1439605	.	+	.	gene_id "alternative_acceptor.499"; transcript_id "alternative_acceptor.499"; gene_name "CUFF.2044"; flanks "1438891-,1439605^"; structure "1-,2-"; splice_chain "1439605-,1439715-";
chr19	juncbase	alternative_acceptor	1438891	1439960	.	+	.	gene_id "alternative_acceptor.500"; transcript_id "alternative_acceptor.500"; gene_name "CUFF.2044"; flanks "1438891-,1439960^"; structure "1-,2-"; splice_chain "1439715-,1439960-";
chr19	juncbase	alternative_acceptor	1438891	1440025	.	+	.	gene_id "alternative_acceptor.501"; transcript_id "alternative_acceptor.501"; gene_name "CUFF.2044"; flanks "1438891-,1440025^"; structure "1-,2-"; splice_chain "1439715-,1440025-";
chr19	juncbase	alternative_acceptor	1438891	1439967	.	+	.	gene_id "alternative_acceptor.502"; transcript_id "alternative_acceptor.502"; gene_name "CUFF.2044"; flanks "1438891-,1439967^"; structure "1-,2-"; splice_chain "1439715-,1439967-";
chr19	juncbase	intron_retention	41939442	41938967	.	-	.	gene_id "intron_retention.621"; transcript_id "intron_retention.621"; gene_name "CUFF.2148"; flanks "41939442-,41938967^"; structure "0,1^2-"; splice_chain ",41939442^41938967-";
chr19	juncbase	cassette	14883154	14876382	.	-	.	gene_id "cassette.421"; transcript_id "cassette.421"; gene_name "CUFF.2092"; flanks "14883154-,14876382^"; structure "0,1-2^"; splice_chain ",14876616-14876470^";
chr19	juncbase	intron_retention	12918143	12918233	.	+	.	gene_id "intron_retention.622"; transcript_id "intron_retention.622"; gene_name "CUFF.2081"; flanks "12918143-,12918233^"; structure "0,1^2-"; splice_chain ",12918143^12918233-";
chr19	juncbase	alternative_donor	52901153	52901620	.	+	.	gene_id "alternative_donor.657"; transcript_id "alternative_donor.657"; gene_name "CUFF.2182"; flanks "52901153-,52901620^"; structure "1^,2^"; splice_chain "52901153^,52901273^";
chr19	juncbase	alternative_donor	52901157	52901620	.	+	.	gene_id "alternative_donor.658"; transcript_id "alternative_donor.658"; gene_name "CUFF.2182"; flanks "52901157-,52901620^"; structure "1^,2^"; splice_chain "52901157^,52901273^";
chr19	juncbase	jcn_only_AA	17450408	17451916	.	+	.	gene_id "jcn_only_AA.676"; transcript_id "jcn_only_AA.676"; gene_name "CUFF.2104"; flanks "17450408-,17451916^"; structure "1-,2-"; splice_chain "17451853-,17451916-";
chr19	juncbase	jcn_only_AD	1440240	1440348	.	+	.	gene_id "jcn_only_AD.823"; transcript_id "jcn_only_AD.823"; gene_name "CUFF.2044"; flanks "1440240-,1440348^"; structure "1^,2^"; splice_chain "1440240^,1440252^";
chr19	juncbase	jcn_only_AA	21632179	21636352	.	-	.	gene_id "jcn_only_AA.677"; transcript_id "jcn_only_AA.677"; gene_name "CUFF.2114"; flanks "21632179-,21636352^"; structure "1-,2-"; splice_chain "21636081-,21632179-";
chr19	juncbase	alternative_donor	17581516	17597372	.	+	.	gene_id "alternative_donor.659"; transcript_id "alternative_donor.659"; gene_name "CUFF.2103"; flanks "17581516-,17597372^"; structure "1^,2^"; splice_chain "17581516^,17594930^";
chr19	juncbase	jcn_only_AD	44764155	44768467	.	+	.	gene_id "jcn_only_AD.824"; transcript_id "jcn_only_AD.824"; gene_name "CUFF.2155"; flanks "44764155-,44768467^"; structure "1^,2^"; splice_chain "44764091^,44764155^";
chr19	juncbase	jcn_only_AD	44764361	44768467	.	+	.	gene_id "jcn_only_AD.825"; transcript_id "jcn_only_AD.825"; gene_name "CUFF.2155"; flanks "44764361-,44768467^"; structure "1^,2^"; splice_chain "44764091^,44764361^";
chr19	juncbase	cassette	6047418	6042134	.	-	.	gene_id "cassette.422"; transcript_id "cassette.422"; gene_name "CUFF.2051"; flanks "6047418-,6042134^"; structure "0,1-2^"; splice_chain ",6044293-6044204^";
chr19	juncbase	intron_retention	18119586	18119780	.	+	.	gene_id "intron_retention.623"; transcript_id "intron_retention.623"; gene_name "CUFF.2106"; flanks "18119586-,18119780^"; structure "0,1^2-"; splice_chain ",18119586^18119780-";
chr19	juncbase	jcn_only_AA	1438891	1439715	.	+	.	gene_id "jcn_only_AA.678"; transcript_id "jcn_only_AA.678"; gene_name "CUFF.2044"; flanks "1438891-,1439715^"; structure "1-,2-"; splice_chain "1439715-,1439960-";
chr19	juncbase	jcn_only_AA	1438891	1440018	.	+	.	gene_id "jcn_only_AA.679"; transcript_id "jcn_only_AA.679"; gene_name "CUFF.2044"; flanks "1438891-,1440018^"; structure "1-,2-"; splice_chain "1439960-,1440018-";
chr19	juncbase	jcn_only_AA	1438891	1439605	.	+	.	gene_id "jcn_only_AA.680"; transcript_id "jcn_only_AA.680"; gene_name "CUFF.2044"; flanks "1438891-,1439605^"; structure "1-,2-"; splice_chain "1439605-,1439960-";
chr19	juncbase	jcn_only_AA	1438891	1440025	.	+	.	gene_id "jcn_only_AA.681"; transcript_id "jcn_only_AA.681"; gene_name "CUFF.2044"; flanks "1438891-,1440025^"; structure "1-,2-"; splice_chain "1439960-,1440025-";
chr19	juncbase	jcn_only_AA	1438891	1439967	.	+	.	gene_id "jcn_only_AA.682"; transcript_id "jcn_only_AA.682"; gene_name "CUFF.2044"; flanks "1438891-,1439967^"; structure "1-,2-"; splice_chain "1439960-,1439967-";
chr19	juncbase	intron_retention	17597766	17597983	.	+	.	gene_id "intron_retention.624"; transcript_id "intron_retention.624"; gene_name ""; flanks "17597766-,17597983^"; structure "0,1^2-"; splice_chain ",17597766^17597983-";
chr19	juncbase	intron_retention	41351199	41350677	.	-	.	gene_id "intron_retention.625"; transcript_id "intron_retention.625"; gene_name "CUFF.2146"; flanks "41351199-,41350677^"; structure "0,1^2-"; splice_chain ",41351199^41350677-";
chr19	juncbase	jcn_only_AA	54648068	54649331	.	+	.	gene_id "jcn_only_AA.683"; transcript_id "jcn_only_AA.683"; gene_name "CUFF.2186"; flanks "54648068-,54649331^"; structure "1-,2-"; splice_chain "54649278-,54649331-";
chr19	juncbase	jcn_only_AA	54648068	54649334	.	+	.	gene_id "jcn_only_AA.684"; transcript_id "jcn_only_AA.684"; gene_name "CUFF.2186"; flanks "54648068-,54649334^"; structure "1-,2-"; splice_chain "54649278-,54649334-";
chr19	juncbase	alternative_donor	41946386	41944319	.	-	.	gene_id "alternative_donor.660"; transcript_id "alternative_donor.660"; gene_name ""; flanks "41946386-,41944319^"; structure "1^,2^"; splice_chain "41946386^,41945787^";
chr19	juncbase	alternative_donor	41945379	41944319	.	-	.	gene_id "alternative_donor.661"; transcript_id "alternative_donor.661"; gene_name ""; flanks "41945379-,41944319^"; structure "1^,2^"; splice_chain "41945787^,41945379^";
chr19	juncbase	cassette	58963071	58965063	.	+	.	gene_id "cassette.423"; transcript_id "cassette.423"; gene_name "CUFF.2196"; flanks "58963071-,58965063^"; structure "0,1-2^"; splice_chain ",58963495-58964149^";
chr19	juncbase	intron_retention	40486053	40486193	.	+	.	gene_id "intron_retention.626"; transcript_id "intron_retention.626"; gene_name "CUFF.2141"; flanks "40486053-,40486193^"; structure "0,1^2-"; splice_chain ",40486053^40486193-";
chr19	juncbase	jcn_only_AD	17445920	17448817	.	+	.	gene_id "jcn_only_AD.826"; transcript_id "jcn_only_AD.826"; gene_name "CUFF.2104"; flanks "17445920-,17448817^"; structure "1^,2^"; splice_chain "17445920^,17448456^";
chr19	juncbase	jcn_only_AD	17448385	17448817	.	+	.	gene_id "jcn_only_AD.827"; transcript_id "jcn_only_AD.827"; gene_name "CUFF.2104"; flanks "17448385-,17448817^"; structure "1^,2^"; splice_chain "17448385^,17448456^";
chr19	juncbase	jcn_only_AD	17447843	17448817	.	+	.	gene_id "jcn_only_AD.828"; transcript_id "jcn_only_AD.828"; gene_name "CUFF.2104"; flanks "17447843-,17448817^"; structure "1^,2^"; splice_chain "17447843^,17448456^";
chr19	juncbase	jcn_only_AD	17448078	17448817	.	+	.	gene_id "jcn_only_AD.829"; transcript_id "jcn_only_AD.829"; gene_name "CUFF.2104"; flanks "17448078-,17448817^"; structure "1^,2^"; splice_chain "17448078^,17448456^";
chr19	juncbase	jcn_only_AD	17448473	17448817	.	+	.	gene_id "jcn_only_AD.830"; transcript_id "jcn_only_AD.830"; gene_name "CUFF.2104"; flanks "17448473-,17448817^"; structure "1^,2^"; splice_chain "17448456^,17448473^";
chr19	juncbase	jcn_only_AD	17447966	17448817	.	+	.	gene_id "jcn_only_AD.831"; transcript_id "jcn_only_AD.831"; gene_name "CUFF.2104"; flanks "17447966-,17448817^"; structure "1^,2^"; splice_chain "17447966^,17448456^";
chr19	juncbase	alternative_donor	45261670	45261981	.	+	.	gene_id "alternative_donor.662"; transcript_id "alternative_donor.662"; gene_name "CUFF.2157"; flanks "45261670-,45261981^"; structure "1^,2^"; splice_chain "45261670^,45261730^";
chr19	juncbase	cassette	14867050	14865939	.	-	.	gene_id "cassette.424"; transcript_id "cassette.424"; gene_name "CUFF.2092"; flanks "14867050-,14865939^"; structure "0,1-2^"; splice_chain ",14866689-14866466^";
chr19	juncbase	cassette	14867050	14863338	.	-	.	gene_id "cassette.425"; transcript_id "cassette.425"; gene_name "CUFF.2092"; flanks "14867050-,14863338^"; structure "0,1-2^"; splice_chain ",14866689-14866466^";
chr19	juncbase	intron_retention	21636352	21636081	.	-	.	gene_id "intron_retention.627"; transcript_id "intron_retention.627"; gene_name "CUFF.2114"; flanks "21636352-,21636081^"; structure "0,1^2-"; splice_chain ",21636352^21636081-";
chr19	juncbase	jcn_only_AD	2427457	2427322	.	-	.	gene_id "jcn_only_AD.832"; transcript_id "jcn_only_AD.832"; gene_name "CUFF.2047"; flanks "2427457-,2427322^"; structure "1^,2^"; splice_chain "2427457^,2427412^";
chr19	juncbase	jcn_only_AA	33882385	33892627	.	-	.	gene_id "jcn_only_AA.685"; transcript_id "jcn_only_AA.685"; gene_name "CUFF.2129"; flanks "33882385-,33892627^"; structure "1-,2-"; splice_chain "33887061-,33882385-";
chr19	juncbase	jcn_only_AA	52085135	52092801	.	+	.	gene_id "jcn_only_AA.686"; transcript_id "jcn_only_AA.686"; gene_name "CUFF.2179"; flanks "52085135-,52092801^"; structure "1-,2-"; splice_chain "52089880-,52092801-";
chr19	juncbase	alternative_acceptor	45251385	45254484	.	+	.	gene_id "alternative_acceptor.503"; transcript_id "alternative_acceptor.503"; gene_name "CUFF.2093,CUFF.2157"; flanks "45251385-,45254484^"; structure "1-,2-"; splice_chain "45251952-,45254484-";
chr19	juncbase	jcn_only_AA	14847056	14854232	.	-	.	gene_id "jcn_only_AA.687"; transcript_id "jcn_only_AA.687"; gene_name "CUFF.2092"; flanks "14847056-,14854232^"; structure "1-,2-"; splice_chain "14852898-,14847056-";
chr19	juncbase	jcn_only_AD	54656736	54657452	.	+	.	gene_id "jcn_only_AD.833"; transcript_id "jcn_only_AD.833"; gene_name "CUFF.2186"; flanks "54656736-,54657452^"; structure "1^,2^"; splice_chain "54656736^,54656819^";
chr19	juncbase	jcn_only_AD	39924134	39924058	.	-	.	gene_id "jcn_only_AD.834"; transcript_id "jcn_only_AD.834"; gene_name "CUFF.2139"; flanks "39924134-,39924058^"; structure "1^,2^"; splice_chain "39924162^,39924134^";
chr19	juncbase	jcn_only_AD	39924158	39924058	.	-	.	gene_id "jcn_only_AD.835"; transcript_id "jcn_only_AD.835"; gene_name "CUFF.2139"; flanks "39924158-,39924058^"; structure "1^,2^"; splice_chain "39924162^,39924158^";
chr19	juncbase	intron_retention	1438891	1439715	.	+	.	gene_id "intron_retention.628"; transcript_id "intron_retention.628"; gene_name ""; flanks "1438891-,1439715^"; structure "0,1^2-"; splice_chain ",1438891^1439715-";
chr19	juncbase	intron_retention	1438891	1440025	.	+	.	gene_id "intron_retention.629"; transcript_id "intron_retention.629"; gene_name ""; flanks "1438891-,1440025^"; structure "0,1^2-"; splice_chain ",1438891^1440025-";
chr19	juncbase	intron_retention	52076654	52084644	.	+	.	gene_id "intron_retention.630"; transcript_id "intron_retention.630"; gene_name "CUFF.2179"; flanks "52076654-,52084644^"; structure "0,1^2-"; splice_chain ",52076654^52084644-";
chr19	juncbase	jcn_only_AD	33886996	33882385	.	-	.	gene_id "jcn_only_AD.836"; transcript_id "jcn_only_AD.836"; gene_name ""; flanks "33886996-,33882385^"; structure "1^,2^"; splice_chain "33892627^,33886996^";
chr19	juncbase	jcn_only_AD	33886016	33882385	.	-	.	gene_id "jcn_only_AD.837"; transcript_id "jcn_only_AD.837"; gene_name ""; flanks "33886016-,33882385^"; structure "1^,2^"; splice_chain "33892627^,33886016^";
chr19	juncbase	alternative_acceptor	44771114	44777052	.	+	.	gene_id "alternative_acceptor.504"; transcript_id "alternative_acceptor.504"; gene_name ""; flanks "44771114-,44777052^"; structure "1-,2-"; splice_chain "44777052-,44777458-";
chr19	juncbase	alternative_acceptor	44771114	44771533	.	+	.	gene_id "alternative_acceptor.505"; transcript_id "alternative_acceptor.505"; gene_name ""; flanks "44771114-,44771533^"; structure "1-,2-"; splice_chain "44771533-,44777458-";
chr19	juncbase	cassette	51537236	51534177	.	-	.	gene_id "cassette.426"; transcript_id "cassette.426"; gene_name "CUFF.2177"; flanks "51537236-,51534177^"; structure "0,1-2^"; splice_chain ",51535391-51535132^";
chr19	juncbase	jcn_only_AD	56348076	56344281	.	-	.	gene_id "jcn_only_AD.838"; transcript_id "jcn_only_AD.838"; gene_name "CUFF.2191"; flanks "56348076-,56344281^"; structure "1^,2^"; splice_chain "56348076^,56347702^";
chr19	juncbase	alternative_acceptor	1438891	1439715	.	+	.	gene_id "alternative_acceptor.506"; transcript_id "alternative_acceptor.506"; gene_name ""; flanks "1438891-,1439715^"; structure "1-,2-"; splice_chain "1439715-,1440018-";
chr19	juncbase	alternative_acceptor	1438891	1439605	.	+	.	gene_id "alternative_acceptor.507"; transcript_id "alternative_acceptor.507"; gene_name ""; flanks "1438891-,1439605^"; structure "1-,2-"; splice_chain "1439605-,1440018-";
chr19	juncbase	alternative_acceptor	1438891	1439960	.	+	.	gene_id "alternative_acceptor.508"; transcript_id "alternative_acceptor.508"; gene_name ""; flanks "1438891-,1439960^"; structure "1-,2-"; splice_chain "1439960-,1440018-";
chr19	juncbase	alternative_acceptor	1438891	1440025	.	+	.	gene_id "alternative_acceptor.509"; transcript_id "alternative_acceptor.509"; gene_name ""; flanks "1438891-,1440025^"; structure "1-,2-"; splice_chain "1440018-,1440025-";
chr19	juncbase	alternative_acceptor	1438891	1439967	.	+	.	gene_id "alternative_acceptor.510"; transcript_id "alternative_acceptor.510"; gene_name ""; flanks "1438891-,1439967^"; structure "1-,2-"; splice_chain "1439967-,1440018-";
chr19	juncbase	alternative_acceptor	32851524	32873373	.	+	.	gene_id "alternative_acceptor.511"; transcript_id "alternative_acceptor.511"; gene_name "CUFF.2117,CUFF.2181"; flanks "32851524-,32873373^"; structure "1-,2-"; splice_chain "32871515-,32873373-";
chr19	juncbase	alternative_acceptor	54657577	54657681	.	+	.	gene_id "alternative_acceptor.512"; transcript_id "alternative_acceptor.512"; gene_name "CUFF.2186"; flanks "54657577-,54657681^"; structure "1-,2-"; splice_chain "54657681-,54658996-";
chr19	juncbase	alternative_acceptor	54657577	54659047	.	+	.	gene_id "alternative_acceptor.513"; transcript_id "alternative_acceptor.513"; gene_name "CUFF.2186"; flanks "54657577-,54659047^"; structure "1-,2-"; splice_chain "54658996-,54659047-";
chr19	juncbase	jcn_only_AD	44764155	44768467	.	+	.	gene_id "jcn_only_AD.839"; transcript_id "jcn_only_AD.839"; gene_name "CUFF.2155"; flanks "44764155-,44768467^"; structure "1^,2^"; splice_chain "44764155^,44764361^";
chr19	juncbase	jcn_only_AD	44764091	44768467	.	+	.	gene_id "jcn_only_AD.840"; transcript_id "jcn_only_AD.840"; gene_name "CUFF.2155"; flanks "44764091-,44768467^"; structure "1^,2^"; splice_chain "44764091^,44764361^";
chr19	juncbase	alternative_acceptor	52264483	52271898	.	+	.	gene_id "alternative_acceptor.514"; transcript_id "alternative_acceptor.514"; gene_name "CUFF.2181"; flanks "52264483-,52271898^"; structure "1-,2-"; splice_chain "52265670-,52271898-";
chr19	juncbase	alternative_acceptor	52264483	52266615	.	+	.	gene_id "alternative_acceptor.515"; transcript_id "alternative_acceptor.515"; gene_name "CUFF.2181"; flanks "52264483-,52266615^"; structure "1-,2-"; splice_chain "52265670-,52266615-";
chr19	juncbase	intron_retention	17447966	17448683	.	+	.	gene_id "intron_retention.631"; transcript_id "intron_retention.631"; gene_name ""; flanks "17447966-,17448683^"; structure "0,1^2-"; splice_chain ",17447966^17448683-";
chr19	juncbase	jcn_only_AA	52264483	52271898	.	+	.	gene_id "jcn_only_AA.688"; transcript_id "jcn_only_AA.688"; gene_name "CUFF.2181"; flanks "52264483-,52271898^"; structure "1-,2-"; splice_chain "52265670-,52271898-";
chr19	juncbase	jcn_only_AA	52264483	52266615	.	+	.	gene_id "jcn_only_AA.689"; transcript_id "jcn_only_AA.689"; gene_name "CUFF.2181"; flanks "52264483-,52266615^"; structure "1-,2-"; splice_chain "52265670-,52266615-";
chr19	juncbase	cassette	51537236	51534177	.	-	.	gene_id "cassette.427"; transcript_id "cassette.427"; gene_name "CUFF.2177"; flanks "51537236-,51534177^"; structure "0,1-2^"; splice_chain ",51535391-51535036^";
chr19	juncbase	jcn_only_AD	41356152	41355885	.	-	.	gene_id "jcn_only_AD.841"; transcript_id "jcn_only_AD.841"; gene_name "CUFF.2146"; flanks "41356152-,41355885^"; structure "1^,2^"; splice_chain "41356152^,41356142^";
chr19	juncbase	jcn_only_AD	6199491	6192040	.	-	.	gene_id "jcn_only_AD.842"; transcript_id "jcn_only_AD.842"; gene_name ""; flanks "6199491-,6192040^"; structure "1^,2^"; splice_chain "6199491^,6199487^";
chr19	juncbase	cassette	6007023	6002881	.	-	.	gene_id "cassette.428"; transcript_id "cassette.428"; gene_name "CUFF.2051"; flanks "6007023-,6002881^"; structure "0,1-2^"; splice_chain ",6004309-6004212^";
chr19	juncbase	cassette	17449550	17449932	.	+	.	gene_id "cassette.429"; transcript_id "cassette.429"; gene_name "CUFF.2104"; flanks "17449550-,17449932^"; structure "0,1-2^"; splice_chain ",17449763-17449835^";
chr19	juncbase	alternative_donor	17445920	17448817	.	+	.	gene_id "alternative_donor.663"; transcript_id "alternative_donor.663"; gene_name "CUFF.2104"; flanks "17445920-,17448817^"; structure "1^,2^"; splice_chain "17445920^,17447843^";
chr19	juncbase	alternative_donor	17448385	17448817	.	+	.	gene_id "alternative_donor.664"; transcript_id "alternative_donor.664"; gene_name "CUFF.2104"; flanks "17448385-,17448817^"; structure "1^,2^"; splice_chain "17447843^,17448385^";
chr19	juncbase	alternative_donor	17448456	17448817	.	+	.	gene_id "alternative_donor.665"; transcript_id "alternative_donor.665"; gene_name "CUFF.2104"; flanks "17448456-,17448817^"; structure "1^,2^"; splice_chain "17447843^,17448456^";
chr19	juncbase	alternative_donor	17448078	17448817	.	+	.	gene_id "alternative_donor.666"; transcript_id "alternative_donor.666"; gene_name "CUFF.2104"; flanks "17448078-,17448817^"; structure "1^,2^"; splice_chain "17447843^,17448078^";
chr19	juncbase	alternative_donor	17448473	17448817	.	+	.	gene_id "alternative_donor.667"; transcript_id "alternative_donor.667"; gene_name "CUFF.2104"; flanks "17448473-,17448817^"; structure "1^,2^"; splice_chain "17447843^,17448473^";
chr19	juncbase	alternative_donor	17447966	17448817	.	+	.	gene_id "alternative_donor.668"; transcript_id "alternative_donor.668"; gene_name "CUFF.2104"; flanks "17447966-,17448817^"; structure "1^,2^"; splice_chain "17447843^,17447966^";
chr19	juncbase	jcn_only_AD	44771114	44777052	.	+	.	gene_id "jcn_only_AD.843"; transcript_id "jcn_only_AD.843"; gene_name ""; flanks "44771114-,44777052^"; structure "1^,2^"; splice_chain "44771114^,44771297^";
chr19	juncbase	intron_retention	42734831	42734543	.	-	.	gene_id "intron_retention.632"; transcript_id "intron_retention.632"; gene_name "CUFF.2151"; flanks "42734831-,42734543^"; structure "0,1^2-"; splice_chain ",42734831^42734543-";
chr19	juncbase	alternative_acceptor	7075116	7075687	.	+	.	gene_id "alternative_acceptor.516"; transcript_id "alternative_acceptor.516"; gene_name "CUFF.2182"; flanks "7075116-,7075687^"; structure "1-,2-"; splice_chain "7075666-,7075687-";
chr19	juncbase	intron_retention	54657577	54657681	.	+	.	gene_id "intron_retention.633"; transcript_id "intron_retention.633"; gene_name "CUFF.2186"; flanks "54657577-,54657681^"; structure "0,1^2-"; splice_chain ",54657577^54657681-";
chr19	juncbase	alternative_acceptor	4304758	4306021	.	+	.	gene_id "alternative_acceptor.517"; transcript_id "alternative_acceptor.517"; gene_name "CUFF.2048"; flanks "4304758-,4306021^"; structure "1-,2-"; splice_chain "4305982-,4306021-";
chr19	juncbase	alternative_acceptor	4304758	4305943	.	+	.	gene_id "alternative_acceptor.518"; transcript_id "alternative_acceptor.518"; gene_name "CUFF.2048"; flanks "4304758-,4305943^"; structure "1-,2-"; splice_chain "4305943-,4305982-";
chr19	juncbase	jcn_only_AD	41945379	41944319	.	-	.	gene_id "jcn_only_AD.844"; transcript_id "jcn_only_AD.844"; gene_name "CUFF.2148"; flanks "41945379-,41944319^"; structure "1^,2^"; splice_chain "41946386^,41945379^";
chr19	juncbase	jcn_only_AD	41945787	41944319	.	-	.	gene_id "jcn_only_AD.845"; transcript_id "jcn_only_AD.845"; gene_name "CUFF.2148"; flanks "41945787-,41944319^"; structure "1^,2^"; splice_chain "41946386^,41945787^";
chr19	juncbase	intron_retention	45261670	45261981	.	+	.	gene_id "intron_retention.634"; transcript_id "intron_retention.634"; gene_name "CUFF.2157"; flanks "45261670-,45261981^"; structure "0,1^2-"; splice_chain ",45261670^45261981-";
chr19	juncbase	alternative_donor	16199930	16204346	.	+	.	gene_id "alternative_donor.669"; transcript_id "alternative_donor.669"; gene_name "CUFF.2093"; flanks "16199930-,16204346^"; structure "1^,2^"; splice_chain "16199930^,16203942^";
chr19	juncbase	intron_retention	49302932	49300590	.	-	.	gene_id "intron_retention.635"; transcript_id "intron_retention.635"; gene_name "CUFF.2163"; flanks "49302932-,49300590^"; structure "0,1^2-"; splice_chain ",49302932^49300590-";
chr19	juncbase	jcn_only_AD	34003499	33984243	.	-	.	gene_id "jcn_only_AD.846"; transcript_id "jcn_only_AD.846"; gene_name ""; flanks "34003499-,33984243^"; structure "1^,2^"; splice_chain "34003499^,33991844^";
chr19	juncbase	jcn_only_AD	34001934	33984243	.	-	.	gene_id "jcn_only_AD.847"; transcript_id "jcn_only_AD.847"; gene_name ""; flanks "34001934-,33984243^"; structure "1^,2^"; splice_chain "34001934^,33991844^";
chr19	juncbase	cassette	6110404	6044293	.	-	.	gene_id "cassette.430"; transcript_id "cassette.430"; gene_name "CUFF.2051"; flanks "6110404-,6044293^"; structure "0,1-2^"; splice_chain ",6047515-6047418^";
chr19	juncbase	jcn_only_AD	41946386	41944319	.	-	.	gene_id "jcn_only_AD.848"; transcript_id "jcn_only_AD.848"; gene_name ""; flanks "41946386-,41944319^"; structure "1^,2^"; splice_chain "41946386^,41945787^";
chr19	juncbase	jcn_only_AD	41945379	41944319	.	-	.	gene_id "jcn_only_AD.849"; transcript_id "jcn_only_AD.849"; gene_name ""; flanks "41945379-,41944319^"; structure "1^,2^"; splice_chain "41945787^,41945379^";
chr19	juncbase	cassette	49299685	49298721	.	-	.	gene_id "cassette.431"; transcript_id "cassette.431"; gene_name "CUFF.2163"; flanks "49299685-,49298721^"; structure "0,1-2^"; splice_chain ",49299586-49299404^";
chr19	juncbase	jcn_only_AA	54657577	54657681	.	+	.	gene_id "jcn_only_AA.690"; transcript_id "jcn_only_AA.690"; gene_name ""; flanks "54657577-,54657681^"; structure "1-,2-"; splice_chain "54657681-,54659047-";
chr19	juncbase	jcn_only_AA	54657577	54658996	.	+	.	gene_id "jcn_only_AA.691"; transcript_id "jcn_only_AA.691"; gene_name ""; flanks "54657577-,54658996^"; structure "1-,2-"; splice_chain "54658996-,54659047-";
chr19	juncbase	intron_retention	52917621	52918192	.	+	.	gene_id "intron_retention.636"; transcript_id "intron_retention.636"; gene_name "CUFF.2182"; flanks "52917621-,52918192^"; structure "0,1^2-"; splice_chain ",52917621^52918192-";
chr19	juncbase	alternative_acceptor	20236318	20243270	.	-	.	gene_id "alternative_acceptor.519"; transcript_id "alternative_acceptor.519"; gene_name "CUFF.2112"; flanks "20236318-,20243270^"; structure "1-,2-"; splice_chain "20236592-,20236318-";
chr19	juncbase	alternative_acceptor	44768528	44770351	.	+	.	gene_id "alternative_acceptor.520"; transcript_id "alternative_acceptor.520"; gene_name "CUFF.2186"; flanks "44768528-,44770351^"; structure "1-,2-"; splice_chain "44770308-,44770351-";
chr19	juncbase	jcn_only_AD	33892627	33882385	.	-	.	gene_id "jcn_only_AD.850"; transcript_id "jcn_only_AD.850"; gene_name "CUFF.2129"; flanks "33892627-,33882385^"; structure "1^,2^"; splice_chain "33892627^,33886016^";
chr19	juncbase	jcn_only_AD	33886996	33882385	.	-	.	gene_id "jcn_only_AD.851"; transcript_id "jcn_only_AD.851"; gene_name "CUFF.2129"; flanks "33886996-,33882385^"; structure "1^,2^"; splice_chain "33886996^,33886016^";
chr19	juncbase	intron_retention	17448078	17448817	.	+	.	gene_id "intron_retention.637"; transcript_id "intron_retention.637"; gene_name ""; flanks "17448078-,17448817^"; structure "0,1^2-"; splice_chain ",17448078^17448817-";
chr19	juncbase	alternative_donor	52271785	52271898	.	+	.	gene_id "alternative_donor.670"; transcript_id "alternative_donor.670"; gene_name "CUFF.2181"; flanks "52271785-,52271898^"; structure "1^,2^"; splice_chain "52266770^,52271785^";
chr19	juncbase	alternative_donor	52264483	52271898	.	+	.	gene_id "alternative_donor.671"; transcript_id "alternative_donor.671"; gene_name "CUFF.2181"; flanks "52264483-,52271898^"; structure "1^,2^"; splice_chain "52264483^,52266770^";
chr19	juncbase	alternative_donor	52265788	52271898	.	+	.	gene_id "alternative_donor.672"; transcript_id "alternative_donor.672"; gene_name "CUFF.2181"; flanks "52265788-,52271898^"; structure "1^,2^"; splice_chain "52265788^,52266770^";
chr19	juncbase	jcn_only_AA	51525920	51526348	.	-	.	gene_id "jcn_only_AA.692"; transcript_id "jcn_only_AA.692"; gene_name "CUFF.2175"; flanks "51525920-,51526348^"; structure "1-,2-"; splice_chain "51525953-,51525920-";
chr19	juncbase	jcn_only_AA	40909769	40913813	.	-	.	gene_id "jcn_only_AA.693"; transcript_id "jcn_only_AA.693"; gene_name "CUFF.2142"; flanks "40909769-,40913813^"; structure "1-,2-"; splice_chain "40913626-,40909769-";
chr19	juncbase	jcn_only_AD	10204489	10204295	.	-	.	gene_id "jcn_only_AD.852"; transcript_id "jcn_only_AD.852"; gene_name "CUFF.2069"; flanks "10204489-,10204295^"; structure "1^,2^"; splice_chain "10204489^,10204369^";
chr19	juncbase	jcn_only_AD	33968953	33954968	.	-	.	gene_id "jcn_only_AD.853"; transcript_id "jcn_only_AD.853"; gene_name ""; flanks "33968953-,33954968^"; structure "1^,2^"; splice_chain "33968953^,33968952^";
chr19	juncbase	jcn_only_AD	33967986	33954968	.	-	.	gene_id "jcn_only_AD.854"; transcript_id "jcn_only_AD.854"; gene_name ""; flanks "33967986-,33954968^"; structure "1^,2^"; splice_chain "33968952^,33967986^";
chr19	juncbase	intron_retention	16178548	16186857	.	+	.	gene_id "intron_retention.638"; transcript_id "intron_retention.638"; gene_name "CUFF.2093"; flanks "16178548-,16186857^"; structure "0,1^2-"; splice_chain ",16178548^16186857-";
chr19	juncbase	jcn_only_AA	54648068	54649331	.	+	.	gene_id "jcn_only_AA.694"; transcript_id "jcn_only_AA.694"; gene_name "CUFF.2186"; flanks "54648068-,54649331^"; structure "1-,2-"; splice_chain "54649331-,54649334-";
chr19	juncbase	jcn_only_AA	54648068	54649278	.	+	.	gene_id "jcn_only_AA.695"; transcript_id "jcn_only_AA.695"; gene_name "CUFF.2186"; flanks "54648068-,54649278^"; structure "1-,2-"; splice_chain "54649278-,54649334-";
chr19	juncbase	intron_retention	17452542	17452965	.	+	.	gene_id "intron_retention.639"; transcript_id "intron_retention.639"; gene_name "CUFF.2104"; flanks "17452542-,17452965^"; structure "0,1^2-"; splice_chain ",17452542^17452965-";
chr19	juncbase	jcn_only_AD	1438427	1438806	.	+	.	gene_id "jcn_only_AD.855"; transcript_id "jcn_only_AD.855"; gene_name "CUFF.2044"; flanks "1438427-,1438806^"; structure "1^,2^"; splice_chain "1438427^,1438579^";
chr19	juncbase	jcn_only_AA	6148340	6199487	.	-	.	gene_id "jcn_only_AA.696"; transcript_id "jcn_only_AA.696"; gene_name ""; flanks "6148340-,6199487^"; structure "1-,2-"; splice_chain "6192040-,6148340-";
chr19	juncbase	jcn_only_AA	6176454	6199487	.	-	.	gene_id "jcn_only_AA.697"; transcript_id "jcn_only_AA.697"; gene_name ""; flanks "6176454-,6199487^"; structure "1-,2-"; splice_chain "6192040-,6176454-";
chr19	juncbase	alternative_acceptor	17447966	17448817	.	+	.	gene_id "alternative_acceptor.521"; transcript_id "alternative_acceptor.521"; gene_name ""; flanks "17447966-,17448817^"; structure "1-,2-"; splice_chain "17448683-,17448817-";
chr19	juncbase	intron_retention	36139795	36142135	.	+	.	gene_id "intron_retention.640"; transcript_id "intron_retention.640"; gene_name ""; flanks "36139795-,36142135^"; structure "0,1^2-"; splice_chain ",36139795^36142135-";
chr19	juncbase	jcn_only_AA	56321704	56343329	.	-	.	gene_id "jcn_only_AA.698"; transcript_id "jcn_only_AA.698"; gene_name "CUFF.2191"; flanks "56321704-,56343329^"; structure "1-,2-"; splice_chain "56329602-,56321704-";
chr19	juncbase	cassette	14867050	14865939	.	-	.	gene_id "cassette.432"; transcript_id "cassette.432"; gene_name "CUFF.2092"; flanks "14867050-,14865939^"; structure "0,1-2^"; splice_chain ",14866656-14866466^";
chr19	juncbase	cassette	14867050	14863338	.	-	.	gene_id "cassette.433"; transcript_id "cassette.433"; gene_name "CUFF.2092"; flanks "14867050-,14863338^"; structure "0,1-2^"; splice_chain ",14866656-14866466^";
chr19	juncbase	cassette	41944123	41939578	.	-	.	gene_id "cassette.434"; transcript_id "cassette.434"; gene_name "CUFF.2148"; flanks "41944123-,41939578^"; structure "0,1-2^"; splice_chain ",41942377-41942297^";
chr19	juncbase	alternative_acceptor	40478151	40478369	.	+	.	gene_id "alternative_acceptor.522"; transcript_id "alternative_acceptor.522"; gene_name "CUFF.2141"; flanks "40478151-,40478369^"; structure "1-,2-"; splice_chain "40478276-,40478369-";
chr19	juncbase	cassette	52901872	52905200	.	+	.	gene_id "cassette.435"; transcript_id "cassette.435"; gene_name "CUFF.2182"; flanks "52901872-,52905200^"; structure "0,1-2^"; splice_chain ",52904938-52905006^";
chr19	juncbase	jcn_only_AA	10381902	10394805	.	+	.	gene_id "jcn_only_AA.699"; transcript_id "jcn_only_AA.699"; gene_name "CUFF.2186"; flanks "10381902-,10394805^"; structure "1-,2-"; splice_chain "10385441-,10394805-";
chr19	juncbase	intron_retention	50309198	50309376	.	+	.	gene_id "intron_retention.641"; transcript_id "intron_retention.641"; gene_name "CUFF.2167"; flanks "50309198-,50309376^"; structure "0,1^2-"; splice_chain ",50309198^50309376-";
chr19	juncbase	intron_retention	6375713	6375627	.	-	.	gene_id "intron_retention.642"; transcript_id "intron_retention.642"; gene_name "CUFF.2057"; flanks "6375713-,6375627^"; structure "0,1^2-"; splice_chain ",6375713^6375627-";
chr19	juncbase	cassette	14857708	14854596	.	-	.	gene_id "cassette.436"; transcript_id "cassette.436"; gene_name "CUFF.2092"; flanks "14857708-,14854596^"; structure "0,1-2^"; splice_chain ",14857135-14857044^";
chr19	juncbase	alternative_acceptor	51528922	51529794	.	-	.	gene_id "alternative_acceptor.523"; transcript_id "alternative_acceptor.523"; gene_name "CUFF.2175"; flanks "51528922-,51529794^"; structure "1-,2-"; splice_chain "51528954-,51528922-";
chr19	juncbase	alternative_acceptor	44771114	44777458	.	+	.	gene_id "alternative_acceptor.524"; transcript_id "alternative_acceptor.524"; gene_name "CUFF.2155"; flanks "44771114-,44777458^"; structure "1-,2-"; splice_chain "44777052-,44777458-";
chr19	juncbase	alternative_acceptor	44771114	44771533	.	+	.	gene_id "alternative_acceptor.525"; transcript_id "alternative_acceptor.525"; gene_name "CUFF.2155"; flanks "44771114-,44771533^"; structure "1-,2-"; splice_chain "44771533-,44777052-";
chr19	juncbase	alternative_donor	1440240	1440348	.	+	.	gene_id "alternative_donor.673"; transcript_id "alternative_donor.673"; gene_name "CUFF.2044"; flanks "1440240-,1440348^"; structure "1^,2^"; splice_chain "1440240^,1440252^";
chr19	juncbase	alternative_acceptor	52264483	52265670	.	+	.	gene_id "alternative_acceptor.526"; transcript_id "alternative_acceptor.526"; gene_name ""; flanks "52264483-,52265670^"; structure "1-,2-"; splice_chain "52265670-,52271898-";
chr19	juncbase	alternative_acceptor	52264483	52266615	.	+	.	gene_id "alternative_acceptor.527"; transcript_id "alternative_acceptor.527"; gene_name ""; flanks "52264483-,52266615^"; structure "1-,2-"; splice_chain "52266615-,52271898-";
chr19	juncbase	alternative_acceptor	50308833	50308982	.	+	.	gene_id "alternative_acceptor.528"; transcript_id "alternative_acceptor.528"; gene_name "CUFF.2167"; flanks "50308833-,50308982^"; structure "1-,2-"; splice_chain "50308918-,50308982-";
chr19	juncbase	jcn_only_AA	12917893	12918021	.	+	.	gene_id "jcn_only_AA.700"; transcript_id "jcn_only_AA.700"; gene_name "CUFF.2104"; flanks "12917893-,12918021^"; structure "1-,2-"; splice_chain "12918020-,12918021-";
chr19	juncbase	jcn_only_AD	6049147	6047515	.	-	.	gene_id "jcn_only_AD.856"; transcript_id "jcn_only_AD.856"; gene_name "CUFF.2051"; flanks "6049147-,6047515^"; structure "1^,2^"; splice_chain "6148242^,6049147^";
chr19	juncbase	jcn_only_AD	6110404	6047515	.	-	.	gene_id "jcn_only_AD.857"; transcript_id "jcn_only_AD.857"; gene_name "CUFF.2051"; flanks "6110404-,6047515^"; structure "1^,2^"; splice_chain "6148242^,6110404^";
chr19	juncbase	jcn_only_AD	6057173	6047515	.	-	.	gene_id "jcn_only_AD.858"; transcript_id "jcn_only_AD.858"; gene_name "CUFF.2051"; flanks "6057173-,6047515^"; structure "1^,2^"; splice_chain "6148242^,6057173^";
chr19	juncbase	jcn_only_AD	6072016	6047515	.	-	.	gene_id "jcn_only_AD.859"; transcript_id "jcn_only_AD.859"; gene_name "CUFF.2051"; flanks "6072016-,6047515^"; structure "1^,2^"; splice_chain "6148242^,6072016^";
chr19	juncbase	cassette	49316920	49316605	.	-	.	gene_id "cassette.437"; transcript_id "cassette.437"; gene_name "CUFF.2165"; flanks "49316920-,49316605^"; structure "0,1-2^"; splice_chain ",49316809-49316713^";
chr19	juncbase	alternative_acceptor	4317277	4318381	.	+	.	gene_id "alternative_acceptor.529"; transcript_id "alternative_acceptor.529"; gene_name ""; flanks "4317277-,4318381^"; structure "1-,2-"; splice_chain "4318343-,4318381-";
chr19	juncbase	intron_retention	52901157	52901707	.	+	.	gene_id "intron_retention.643"; transcript_id "intron_retention.643"; gene_name ""; flanks "52901157-,52901707^"; structure "0,1^2-"; splice_chain ",52901157^52901707-";
chr19	juncbase	cassette	8165785	8161890	.	-	.	gene_id "cassette.438"; transcript_id "cassette.438"; gene_name "CUFF.2064"; flanks "8165785-,8161890^"; structure "0,1-2^"; splice_chain ",8162298-8162173^";
chr19	juncbase	intron_retention	17449835	17449932	.	+	.	gene_id "intron_retention.644"; transcript_id "intron_retention.644"; gene_name "CUFF.2104"; flanks "17449835-,17449932^"; structure "0,1^2-"; splice_chain ",17449835^17449932-";
chr19	juncbase	intron_retention	51538051	51537896	.	-	.	gene_id "intron_retention.645"; transcript_id "intron_retention.645"; gene_name "CUFF.2177"; flanks "51538051-,51537896^"; structure "0,1^2-"; splice_chain ",51538051^51537896-";
chr19	juncbase	intron_retention	17597766	17597909	.	+	.	gene_id "intron_retention.646"; transcript_id "intron_retention.646"; gene_name ""; flanks "17597766-,17597909^"; structure "0,1^2-"; splice_chain ",17597766^17597909-";
chr19	juncbase	alternative_donor	6148242	6047515	.	-	.	gene_id "alternative_donor.674"; transcript_id "alternative_donor.674"; gene_name "CUFF.2051"; flanks "6148242-,6047515^"; structure "1^,2^"; splice_chain "6148242^,6072016^";
chr19	juncbase	alternative_donor	6049147	6047515	.	-	.	gene_id "alternative_donor.675"; transcript_id "alternative_donor.675"; gene_name "CUFF.2051"; flanks "6049147-,6047515^"; structure "1^,2^"; splice_chain "6072016^,6049147^";
chr19	juncbase	alternative_donor	6110404	6047515	.	-	.	gene_id "alternative_donor.676"; transcript_id "alternative_donor.676"; gene_name "CUFF.2051"; flanks "6110404-,6047515^"; structure "1^,2^"; splice_chain "6110404^,6072016^";
chr19	juncbase	alternative_donor	6057173	6047515	.	-	.	gene_id "alternative_donor.677"; transcript_id "alternative_donor.677"; gene_name "CUFF.2051"; flanks "6057173-,6047515^"; structure "1^,2^"; splice_chain "6072016^,6057173^";
chr19	juncbase	intron_retention	4310593	4311839	.	+	.	gene_id "intron_retention.647"; transcript_id "intron_retention.647"; gene_name "CUFF.2048"; flanks "4310593-,4311839^"; structure "0,1^2-"; splice_chain ",4310593^4311839-";
chr19	juncbase	intron_retention	17447536	17447629	.	+	.	gene_id "intron_retention.648"; transcript_id "intron_retention.648"; gene_name "CUFF.2104"; flanks "17447536-,17447629^"; structure "0,1^2-"; splice_chain ",17447536^17447629-";
chr19	juncbase	intron_retention	17448473	17448683	.	+	.	gene_id "intron_retention.649"; transcript_id "intron_retention.649"; gene_name "CUFF.2104"; flanks "17448473-,17448683^"; structure "0,1^2-"; splice_chain ",17448473^17448683-";
chr19	juncbase	alternative_acceptor	21632179	21636352	.	-	.	gene_id "alternative_acceptor.530"; transcript_id "alternative_acceptor.530"; gene_name "CUFF.2114"; flanks "21632179-,21636352^"; structure "1-,2-"; splice_chain "21636081-,21632179-";
chr19	juncbase	cassette	14866466	14863338	.	-	.	gene_id "cassette.439"; transcript_id "cassette.439"; gene_name "CUFF.2092"; flanks "14866466-,14863338^"; structure "0,1-2^"; splice_chain ",14865939-14865766^";
chr19	juncbase	cassette	14867050	14863338	.	-	.	gene_id "cassette.440"; transcript_id "cassette.440"; gene_name "CUFF.2092"; flanks "14867050-,14863338^"; structure "0,1-2^"; splice_chain ",14865939-14865766^";
chr19	juncbase	jcn_only_AA	44771114	44777458	.	+	.	gene_id "jcn_only_AA.701"; transcript_id "jcn_only_AA.701"; gene_name "CUFF.2155"; flanks "44771114-,44777458^"; structure "1-,2-"; splice_chain "44771533-,44777458-";
chr19	juncbase	jcn_only_AA	44771114	44777052	.	+	.	gene_id "jcn_only_AA.702"; transcript_id "jcn_only_AA.702"; gene_name "CUFF.2155"; flanks "44771114-,44777052^"; structure "1-,2-"; splice_chain "44771533-,44777052-";
chr19	juncbase	cassette	36142251	36149496	.	+	.	gene_id "cassette.441"; transcript_id "cassette.441"; gene_name "CUFF.2131"; flanks "36142251-,36149496^"; structure "0,1-2^"; splice_chain ",36145473-36145573^";
chr19	juncbase	alternative_acceptor	54648068	54649331	.	+	.	gene_id "alternative_acceptor.531"; transcript_id "alternative_acceptor.531"; gene_name "CUFF.2186"; flanks "54648068-,54649331^"; structure "1-,2-"; splice_chain "54649331-,54649334-";
chr19	juncbase	alternative_acceptor	54648068	54649278	.	+	.	gene_id "alternative_acceptor.532"; transcript_id "alternative_acceptor.532"; gene_name "CUFF.2186"; flanks "54648068-,54649278^"; structure "1-,2-"; splice_chain "54649278-,54649334-";
chr19	juncbase	alternative_donor	33968953	33954968	.	-	.	gene_id "alternative_donor.678"; transcript_id "alternative_donor.678"; gene_name ""; flanks "33968953-,33954968^"; structure "1^,2^"; splice_chain "33968953^,33968952^";
chr19	juncbase	alternative_donor	33967986	33954968	.	-	.	gene_id "alternative_donor.679"; transcript_id "alternative_donor.679"; gene_name ""; flanks "33967986-,33954968^"; structure "1^,2^"; splice_chain "33968952^,33967986^";
chr19	juncbase	jcn_only_AD	34003499	33984243	.	-	.	gene_id "jcn_only_AD.860"; transcript_id "jcn_only_AD.860"; gene_name ""; flanks "34003499-,33984243^"; structure "1^,2^"; splice_chain "34003499^,34001934^";
chr19	juncbase	jcn_only_AD	33991844	33984243	.	-	.	gene_id "jcn_only_AD.861"; transcript_id "jcn_only_AD.861"; gene_name ""; flanks "33991844-,33984243^"; structure "1^,2^"; splice_chain "34001934^,33991844^";
chr19	juncbase	jcn_only_AD	33892627	33882385	.	-	.	gene_id "jcn_only_AD.862"; transcript_id "jcn_only_AD.862"; gene_name "CUFF.2129"; flanks "33892627-,33882385^"; structure "1^,2^"; splice_chain "33892627^,33886996^";
chr19	juncbase	jcn_only_AD	33886016	33882385	.	-	.	gene_id "jcn_only_AD.863"; transcript_id "jcn_only_AD.863"; gene_name "CUFF.2129"; flanks "33886016-,33882385^"; structure "1^,2^"; splice_chain "33886996^,33886016^";
chr19	juncbase	jcn_only_AA	1438891	1439715	.	+	.	gene_id "jcn_only_AA.703"; transcript_id "jcn_only_AA.703"; gene_name "CUFF.2044"; flanks "1438891-,1439715^"; structure "1-,2-"; splice_chain "1439715-,1440025-";
chr19	juncbase	jcn_only_AA	1438891	1440018	.	+	.	gene_id "jcn_only_AA.704"; transcript_id "jcn_only_AA.704"; gene_name "CUFF.2044"; flanks "1438891-,1440018^"; structure "1-,2-"; splice_chain "1440018-,1440025-";
chr19	juncbase	jcn_only_AA	1438891	1439605	.	+	.	gene_id "jcn_only_AA.705"; transcript_id "jcn_only_AA.705"; gene_name "CUFF.2044"; flanks "1438891-,1439605^"; structure "1-,2-"; splice_chain "1439605-,1440025-";
chr19	juncbase	jcn_only_AA	1438891	1439960	.	+	.	gene_id "jcn_only_AA.706"; transcript_id "jcn_only_AA.706"; gene_name "CUFF.2044"; flanks "1438891-,1439960^"; structure "1-,2-"; splice_chain "1439960-,1440025-";
chr19	juncbase	jcn_only_AA	1438891	1439967	.	+	.	gene_id "jcn_only_AA.707"; transcript_id "jcn_only_AA.707"; gene_name "CUFF.2044"; flanks "1438891-,1439967^"; structure "1-,2-"; splice_chain "1439967-,1440025-";
chr19	juncbase	jcn_only_AD	6199491	6176454	.	-	.	gene_id "jcn_only_AD.864"; transcript_id "jcn_only_AD.864"; gene_name "CUFF.2191"; flanks "6199491-,6176454^"; structure "1^,2^"; splice_chain "6199491^,6199487^";
chr19	juncbase	intron_retention	18119393	18119520	.	+	.	gene_id "intron_retention.650"; transcript_id "intron_retention.650"; gene_name ""; flanks "18119393-,18119520^"; structure "0,1^2-"; splice_chain ",18119393^18119520-";
chr19	juncbase	alternative_acceptor	1438891	1439715	.	+	.	gene_id "alternative_acceptor.533"; transcript_id "alternative_acceptor.533"; gene_name "CUFF.2044"; flanks "1438891-,1439715^"; structure "1-,2-"; splice_chain "1439715-,1439960-";
chr19	juncbase	alternative_acceptor	1438891	1440018	.	+	.	gene_id "alternative_acceptor.534"; transcript_id "alternative_acceptor.534"; gene_name "CUFF.2044"; flanks "1438891-,1440018^"; structure "1-,2-"; splice_chain "1439960-,1440018-";
chr19	juncbase	alternative_acceptor	1438891	1439605	.	+	.	gene_id "alternative_acceptor.535"; transcript_id "alternative_acceptor.535"; gene_name "CUFF.2044"; flanks "1438891-,1439605^"; structure "1-,2-"; splice_chain "1439605-,1439960-";
chr19	juncbase	alternative_acceptor	1438891	1440025	.	+	.	gene_id "alternative_acceptor.536"; transcript_id "alternative_acceptor.536"; gene_name "CUFF.2044"; flanks "1438891-,1440025^"; structure "1-,2-"; splice_chain "1439960-,1440025-";
chr19	juncbase	alternative_acceptor	1438891	1439967	.	+	.	gene_id "alternative_acceptor.537"; transcript_id "alternative_acceptor.537"; gene_name "CUFF.2044"; flanks "1438891-,1439967^"; structure "1-,2-"; splice_chain "1439960-,1439967-";
chr19	juncbase	jcn_only_AD	17445920	17448817	.	+	.	gene_id "jcn_only_AD.865"; transcript_id "jcn_only_AD.865"; gene_name "CUFF.2104"; flanks "17445920-,17448817^"; structure "1^,2^"; splice_chain "17445920^,17447966^";
chr19	juncbase	jcn_only_AD	17448385	17448817	.	+	.	gene_id "jcn_only_AD.866"; transcript_id "jcn_only_AD.866"; gene_name "CUFF.2104"; flanks "17448385-,17448817^"; structure "1^,2^"; splice_chain "17447966^,17448385^";
chr19	juncbase	jcn_only_AD	17447843	17448817	.	+	.	gene_id "jcn_only_AD.867"; transcript_id "jcn_only_AD.867"; gene_name "CUFF.2104"; flanks "17447843-,17448817^"; structure "1^,2^"; splice_chain "17447843^,17447966^";
chr19	juncbase	jcn_only_AD	17448456	17448817	.	+	.	gene_id "jcn_only_AD.868"; transcript_id "jcn_only_AD.868"; gene_name "CUFF.2104"; flanks "17448456-,17448817^"; structure "1^,2^"; splice_chain "17447966^,17448456^";
chr19	juncbase	jcn_only_AD	17448078	17448817	.	+	.	gene_id "jcn_only_AD.869"; transcript_id "jcn_only_AD.869"; gene_name "CUFF.2104"; flanks "17448078-,17448817^"; structure "1^,2^"; splice_chain "17447966^,17448078^";
chr19	juncbase	jcn_only_AD	17448473	17448817	.	+	.	gene_id "jcn_only_AD.870"; transcript_id "jcn_only_AD.870"; gene_name "CUFF.2104"; flanks "17448473-,17448817^"; structure "1^,2^"; splice_chain "17447966^,17448473^";
chr19	juncbase	alternative_acceptor	52917621	52918377	.	+	.	gene_id "alternative_acceptor.538"; transcript_id "alternative_acceptor.538"; gene_name "CUFF.2182"; flanks "52917621-,52918377^"; structure "1-,2-"; splice_chain "52918192-,52918377-";
chr19	juncbase	intron_retention	1438427	1438810	.	+	.	gene_id "intron_retention.651"; transcript_id "intron_retention.651"; gene_name "CUFF.2044"; flanks "1438427-,1438810^"; structure "0,1^2-"; splice_chain ",1438427^1438810-";
chr19	juncbase	jcn_only_AD	52901273	52901620	.	+	.	gene_id "jcn_only_AD.871"; transcript_id "jcn_only_AD.871"; gene_name "CUFF.2182"; flanks "52901273-,52901620^"; structure "1^,2^"; splice_chain "52901153^,52901273^";
chr19	juncbase	jcn_only_AD	52901157	52901620	.	+	.	gene_id "jcn_only_AD.872"; transcript_id "jcn_only_AD.872"; gene_name "CUFF.2182"; flanks "52901157-,52901620^"; structure "1^,2^"; splice_chain "52901153^,52901157^";
chr19	juncbase	cassette	17611441	17615264	.	+	.	gene_id "cassette.442"; transcript_id "cassette.442"; gene_name "CUFF.2103"; flanks "17611441-,17615264^"; structure "0,1-2^"; splice_chain ",17611521-17611685^";
chr19	juncbase	alternative_donor	33886996	33882385	.	-	.	gene_id "alternative_donor.680"; transcript_id "alternative_donor.680"; gene_name ""; flanks "33886996-,33882385^"; structure "1^,2^"; splice_chain "33892627^,33886996^";
chr19	juncbase	alternative_donor	33886016	33882385	.	-	.	gene_id "alternative_donor.681"; transcript_id "alternative_donor.681"; gene_name ""; flanks "33886016-,33882385^"; structure "1^,2^"; splice_chain "33892627^,33886016^";
chr19	juncbase	intron_retention	17448456	17448817	.	+	.	gene_id "intron_retention.652"; transcript_id "intron_retention.652"; gene_name ""; flanks "17448456-,17448817^"; structure "0,1^2-"; splice_chain ",17448456^17448817-";
chr19	juncbase	intron_retention	11474495	11474837	.	+	.	gene_id "intron_retention.653"; transcript_id "intron_retention.653"; gene_name "CUFF.2072"; flanks "11474495-,11474837^"; structure "0,1^2-"; splice_chain ",11474495^11474837-";
chr19	juncbase	jcn_only_AD	11041000	11044037	.	+	.	gene_id "jcn_only_AD.873"; transcript_id "jcn_only_AD.873"; gene_name "CUFF.2071"; flanks "11041000-,11044037^"; structure "1^,2^"; splice_chain "11041000^,11042936^";
chr19	juncbase	alternative_donor	4306038	4306195	.	+	.	gene_id "alternative_donor.682"; transcript_id "alternative_donor.682"; gene_name "CUFF.2048"; flanks "4306038-,4306195^"; structure "1^,2^"; splice_chain "4306038^,4306066^";
chr19	juncbase	intron_retention	1438891	1440018	.	+	.	gene_id "intron_retention.654"; transcript_id "intron_retention.654"; gene_name ""; flanks "1438891-,1440018^"; structure "0,1^2-"; splice_chain ",1438891^1440018-";
chr19	juncbase	alternative_donor	41946386	41944319	.	-	.	gene_id "alternative_donor.683"; transcript_id "alternative_donor.683"; gene_name "CUFF.2148,CUFF.2175"; flanks "41946386-,41944319^"; structure "1^,2^"; splice_chain "41946386^,41945379^";
chr19	juncbase	alternative_donor	41945787	41944319	.	-	.	gene_id "alternative_donor.684"; transcript_id "alternative_donor.684"; gene_name "CUFF.2148,CUFF.2175"; flanks "41945787-,41944319^"; structure "1^,2^"; splice_chain "41945787^,41945379^";
chr19	juncbase	intron_retention	49117697	49117593	.	-	.	gene_id "intron_retention.655"; transcript_id "intron_retention.655"; gene_name "CUFF.2164"; flanks "49117697-,49117593^"; structure "0,1^2-"; splice_chain ",49117697^49117593-";
chr19	juncbase	jcn_only_AA	54657577	54657681	.	+	.	gene_id "jcn_only_AA.708"; transcript_id "jcn_only_AA.708"; gene_name "CUFF.2186"; flanks "54657577-,54657681^"; structure "1-,2-"; splice_chain "54657681-,54658996-";
chr19	juncbase	jcn_only_AA	54657577	54659047	.	+	.	gene_id "jcn_only_AA.709"; transcript_id "jcn_only_AA.709"; gene_name "CUFF.2186"; flanks "54657577-,54659047^"; structure "1-,2-"; splice_chain "54658996-,54659047-";
chr19	juncbase	jcn_only_AD	4306038	4306195	.	+	.	gene_id "jcn_only_AD.874"; transcript_id "jcn_only_AD.874"; gene_name "CUFF.2048"; flanks "4306038-,4306195^"; structure "1^,2^"; splice_chain "4306038^,4306066^";
chr19	juncbase	alternative_donor	6148242	6047515	.	-	.	gene_id "alternative_donor.685"; transcript_id "alternative_donor.685"; gene_name "CUFF.2051"; flanks "6148242-,6047515^"; structure "1^,2^"; splice_chain "6148242^,6057173^";
chr19	juncbase	alternative_donor	6049147	6047515	.	-	.	gene_id "alternative_donor.686"; transcript_id "alternative_donor.686"; gene_name "CUFF.2051"; flanks "6049147-,6047515^"; structure "1^,2^"; splice_chain "6057173^,6049147^";
chr19	juncbase	alternative_donor	6110404	6047515	.	-	.	gene_id "alternative_donor.687"; transcript_id "alternative_donor.687"; gene_name "CUFF.2051"; flanks "6110404-,6047515^"; structure "1^,2^"; splice_chain "6110404^,6057173^";
chr19	juncbase	alternative_donor	6072016	6047515	.	-	.	gene_id "alternative_donor.688"; transcript_id "alternative_donor.688"; gene_name "CUFF.2051"; flanks "6072016-,6047515^"; structure "1^,2^"; splice_chain "6072016^,6057173^";
chr19	juncbase	jcn_only_AA	33984243	34001934	.	-	.	gene_id "jcn_only_AA.710"; transcript_id "jcn_only_AA.710"; gene_name ""; flanks "33984243-,34001934^"; structure "1-,2-"; splice_chain "33991907-,33984243-";
chr19	juncbase	alternative_acceptor	52085135	52092801	.	+	.	gene_id "alternative_acceptor.539"; transcript_id "alternative_acceptor.539"; gene_name "CUFF.2179"; flanks "52085135-,52092801^"; structure "1-,2-"; splice_chain "52089880-,52092801-";
chr19	juncbase	jcn_only_AA	11468415	11470147	.	+	.	gene_id "jcn_only_AA.711"; transcript_id "jcn_only_AA.711"; gene_name "CUFF.2072"; flanks "11468415-,11470147^"; structure "1-,2-"; splice_chain "11470147-,11470283-";
chr19	juncbase	jcn_only_AA	11468415	11470208	.	+	.	gene_id "jcn_only_AA.712"; transcript_id "jcn_only_AA.712"; gene_name "CUFF.2072"; flanks "11468415-,11470208^"; structure "1-,2-"; splice_chain "11470208-,11470283-";
chr19	juncbase	intron_retention	50304878	50304979	.	+	.	gene_id "intron_retention.656"; transcript_id "intron_retention.656"; gene_name "CUFF.2167"; flanks "50304878-,50304979^"; structure "0,1^2-"; splice_chain ",50304878^50304979-";
chr19	juncbase	intron_retention	50304256	50304660	.	+	.	gene_id "intron_retention.657"; transcript_id "intron_retention.657"; gene_name "CUFF.2167"; flanks "50304256-,50304660^"; structure "0,1^2-"; splice_chain ",50304256^50304660-";
chr19	juncbase	alternative_donor	41356152	41355885	.	-	.	gene_id "alternative_donor.689"; transcript_id "alternative_donor.689"; gene_name "CUFF.2146"; flanks "41356152-,41355885^"; structure "1^,2^"; splice_chain "41356152^,41356142^";
chr19	juncbase	jcn_only_AD	1438891	1440018	.	+	.	gene_id "jcn_only_AD.875"; transcript_id "jcn_only_AD.875"; gene_name "CUFF.2044"; flanks "1438891-,1440018^"; structure "1^,2^"; splice_chain "1438891^,1439825^";
chr19	juncbase	alternative_acceptor	20339292	20349097	.	-	.	gene_id "alternative_acceptor.540"; transcript_id "alternative_acceptor.540"; gene_name "CUFF.2112"; flanks "20339292-,20349097^"; structure "1-,2-"; splice_chain "20339292-,20287618-";
chr19	juncbase	alternative_acceptor	20243396	20349097	.	-	.	gene_id "alternative_acceptor.541"; transcript_id "alternative_acceptor.541"; gene_name "CUFF.2112"; flanks "20243396-,20349097^"; structure "1-,2-"; splice_chain "20287618-,20243396-";
chr19	juncbase	alternative_donor	6148242	6047515	.	-	.	gene_id "alternative_donor.690"; transcript_id "alternative_donor.690"; gene_name "CUFF.2051,CUFF.2163"; flanks "6148242-,6047515^"; structure "1^,2^"; splice_chain "6148242^,6049147^";
chr19	juncbase	alternative_donor	6110404	6047515	.	-	.	gene_id "alternative_donor.691"; transcript_id "alternative_donor.691"; gene_name "CUFF.2051,CUFF.2163"; flanks "6110404-,6047515^"; structure "1^,2^"; splice_chain "6110404^,6049147^";
chr19	juncbase	alternative_donor	6057173	6047515	.	-	.	gene_id "alternative_donor.692"; transcript_id "alternative_donor.692"; gene_name "CUFF.2051,CUFF.2163"; flanks "6057173-,6047515^"; structure "1^,2^"; splice_chain "6057173^,6049147^";
chr19	juncbase	alternative_donor	6072016	6047515	.	-	.	gene_id "alternative_donor.693"; transcript_id "alternative_donor.693"; gene_name "CUFF.2051,CUFF.2163"; flanks "6072016-,6047515^"; structure "1^,2^"; splice_chain "6072016^,6049147^";
chr19	juncbase	jcn_only_AD	4323143	4323345	.	+	.	gene_id "jcn_only_AD.876"; transcript_id "jcn_only_AD.876"; gene_name "CUFF.2048"; flanks "4323143-,4323345^"; structure "1^,2^"; splice_chain "4323143^,4323234^";
chr19	juncbase	jcn_only_AD	4323210	4323345	.	+	.	gene_id "jcn_only_AD.877"; transcript_id "jcn_only_AD.877"; gene_name "CUFF.2048"; flanks "4323210-,4323345^"; structure "1^,2^"; splice_chain "4323210^,4323234^";
chr19	juncbase	cassette	52909896	52918192	.	+	.	gene_id "cassette.443"; transcript_id "cassette.443"; gene_name "CUFF.2182"; flanks "52909896-,52918192^"; structure "0,1-2^"; splice_chain ",52917457-52917621^";
chr19	juncbase	cassette	52909896	52918377	.	+	.	gene_id "cassette.444"; transcript_id "cassette.444"; gene_name "CUFF.2182"; flanks "52909896-,52918377^"; structure "0,1-2^"; splice_chain ",52917457-52917621^";
chr19	juncbase	alternative_donor	17448385	17448817	.	+	.	gene_id "alternative_donor.694"; transcript_id "alternative_donor.694"; gene_name "CUFF.2104"; flanks "17448385-,17448817^"; structure "1^,2^"; splice_chain "17445920^,17448385^";
chr19	juncbase	alternative_donor	17447843	17448817	.	+	.	gene_id "alternative_donor.695"; transcript_id "alternative_donor.695"; gene_name "CUFF.2104"; flanks "17447843-,17448817^"; structure "1^,2^"; splice_chain "17445920^,17447843^";
chr19	juncbase	alternative_donor	17448456	17448817	.	+	.	gene_id "alternative_donor.696"; transcript_id "alternative_donor.696"; gene_name "CUFF.2104"; flanks "17448456-,17448817^"; structure "1^,2^"; splice_chain "17445920^,17448456^";
chr19	juncbase	alternative_donor	17448078	17448817	.	+	.	gene_id "alternative_donor.697"; transcript_id "alternative_donor.697"; gene_name "CUFF.2104"; flanks "17448078-,17448817^"; structure "1^,2^"; splice_chain "17445920^,17448078^";
chr19	juncbase	alternative_donor	17448473	17448817	.	+	.	gene_id "alternative_donor.698"; transcript_id "alternative_donor.698"; gene_name "CUFF.2104"; flanks "17448473-,17448817^"; structure "1^,2^"; splice_chain "17445920^,17448473^";
chr19	juncbase	alternative_donor	17447966	17448817	.	+	.	gene_id "alternative_donor.699"; transcript_id "alternative_donor.699"; gene_name "CUFF.2104"; flanks "17447966-,17448817^"; structure "1^,2^"; splice_chain "17445920^,17447966^";
chr19	juncbase	intron_retention	44764091	44768481	.	+	.	gene_id "intron_retention.658"; transcript_id "intron_retention.658"; gene_name ""; flanks "44764091-,44768481^"; structure "0,1^2-"; splice_chain ",44764091^44768481-";
chr19	juncbase	intron_retention	50306635	50308712	.	+	.	gene_id "intron_retention.659"; transcript_id "intron_retention.659"; gene_name ""; flanks "50306635-,50308712^"; structure "0,1^2-"; splice_chain ",50306635^50308712-";
chr19	juncbase	alternative_acceptor	11467652	11468336	.	+	.	gene_id "alternative_acceptor.542"; transcript_id "alternative_acceptor.542"; gene_name "CUFF.2072"; flanks "11467652-,11468336^"; structure "1-,2-"; splice_chain "11468295-,11468336-";
chr19	juncbase	cassette	6110404	6016282	.	-	.	gene_id "cassette.445"; transcript_id "cassette.445"; gene_name "CUFF.2051"; flanks "6110404-,6016282^"; structure "0,1-2^"; splice_chain ",6026248-6026174^";
chr19	juncbase	cassette	6039991	6016282	.	-	.	gene_id "cassette.446"; transcript_id "cassette.446"; gene_name "CUFF.2051"; flanks "6039991-,6016282^"; structure "0,1-2^"; splice_chain ",6026248-6026174^";
chr19	juncbase	cassette	41939442	41938313	.	-	.	gene_id "cassette.447"; transcript_id "cassette.447"; gene_name "CUFF.2148"; flanks "41939442-,41938313^"; structure "0,1-2^"; splice_chain ",41939339-41939177^";
chr19	juncbase	jcn_only_AA	1438891	1439715	.	+	.	gene_id "jcn_only_AA.713"; transcript_id "jcn_only_AA.713"; gene_name "CUFF.2044"; flanks "1438891-,1439715^"; structure "1-,2-"; splice_chain "1439715-,1439967-";
chr19	juncbase	jcn_only_AA	1438891	1440018	.	+	.	gene_id "jcn_only_AA.714"; transcript_id "jcn_only_AA.714"; gene_name "CUFF.2044"; flanks "1438891-,1440018^"; structure "1-,2-"; splice_chain "1439967-,1440018-";
chr19	juncbase	jcn_only_AA	1438891	1439605	.	+	.	gene_id "jcn_only_AA.715"; transcript_id "jcn_only_AA.715"; gene_name "CUFF.2044"; flanks "1438891-,1439605^"; structure "1-,2-"; splice_chain "1439605-,1439967-";
chr19	juncbase	jcn_only_AA	1438891	1439960	.	+	.	gene_id "jcn_only_AA.716"; transcript_id "jcn_only_AA.716"; gene_name "CUFF.2044"; flanks "1438891-,1439960^"; structure "1-,2-"; splice_chain "1439960-,1439967-";
chr19	juncbase	jcn_only_AA	1438891	1440025	.	+	.	gene_id "jcn_only_AA.717"; transcript_id "jcn_only_AA.717"; gene_name "CUFF.2044"; flanks "1438891-,1440025^"; structure "1-,2-"; splice_chain "1439967-,1440025-";
chr19	juncbase	alternative_acceptor	10381902	10394805	.	+	.	gene_id "alternative_acceptor.543"; transcript_id "alternative_acceptor.543"; gene_name "CUFF.2186"; flanks "10381902-,10394805^"; structure "1-,2-"; splice_chain "10385441-,10394805-";
chr19	juncbase	jcn_only_AA	52264483	52265670	.	+	.	gene_id "jcn_only_AA.718"; transcript_id "jcn_only_AA.718"; gene_name ""; flanks "52264483-,52265670^"; structure "1-,2-"; splice_chain "52265670-,52271898-";
chr19	juncbase	jcn_only_AA	52264483	52266615	.	+	.	gene_id "jcn_only_AA.719"; transcript_id "jcn_only_AA.719"; gene_name ""; flanks "52264483-,52266615^"; structure "1-,2-"; splice_chain "52266615-,52271898-";
chr19	juncbase	intron_retention	6191876	6191605	.	-	.	gene_id "intron_retention.660"; transcript_id "intron_retention.660"; gene_name ""; flanks "6191876-,6191605^"; structure "0,1^2-"; splice_chain ",6191876^6191605-";
chr19	juncbase	intron_retention	54657577	54659047	.	+	.	gene_id "intron_retention.661"; transcript_id "intron_retention.661"; gene_name "CUFF.2186"; flanks "54657577-,54659047^"; structure "0,1^2-"; splice_chain ",54657577^54659047-";
chr19	juncbase	jcn_only_AA	17597766	17597983	.	+	.	gene_id "jcn_only_AA.720"; transcript_id "jcn_only_AA.720"; gene_name ""; flanks "17597766-,17597983^"; structure "1-,2-"; splice_chain "17597909-,17597983-";
chr19	juncbase	jcn_only_AA	45251385	45254484	.	+	.	gene_id "jcn_only_AA.721"; transcript_id "jcn_only_AA.721"; gene_name "CUFF.2093,CUFF.2157"; flanks "45251385-,45254484^"; structure "1-,2-"; splice_chain "45251952-,45254484-";
chr19	juncbase	cassette	41945379	41939578	.	-	.	gene_id "cassette.448"; transcript_id "cassette.448"; gene_name "CUFF.2148"; flanks "41945379-,41939578^"; structure "0,1-2^"; splice_chain ",41944319-41944123^";
chr19	juncbase	intron_retention	18119927	18120401	.	+	.	gene_id "intron_retention.662"; transcript_id "intron_retention.662"; gene_name "CUFF.2106"; flanks "18119927-,18120401^"; structure "0,1^2-"; splice_chain ",18119927^18120401-";
chr19	juncbase	jcn_only_AD	51537841	51537395	.	-	.	gene_id "jcn_only_AD.878"; transcript_id "jcn_only_AD.878"; gene_name "CUFF.2177"; flanks "51537841-,51537395^"; structure "1^,2^"; splice_chain "51537841^,51537681^";
chr19	juncbase	alternative_donor	10213244	10207249	.	-	.	gene_id "alternative_donor.700"; transcript_id "alternative_donor.700"; gene_name "CUFF.2069"; flanks "10213244-,10207249^"; structure "1^,2^"; splice_chain "10213244^,10213228^";
chr19	juncbase	alternative_acceptor	54657577	54658996	.	+	.	gene_id "alternative_acceptor.544"; transcript_id "alternative_acceptor.544"; gene_name "CUFF.2186"; flanks "54657577-,54658996^"; structure "1-,2-"; splice_chain "54657681-,54658996-";
chr19	juncbase	alternative_acceptor	54657577	54659047	.	+	.	gene_id "alternative_acceptor.545"; transcript_id "alternative_acceptor.545"; gene_name "CUFF.2186"; flanks "54657577-,54659047^"; structure "1-,2-"; splice_chain "54657681-,54659047-";
chr19	juncbase	alternative_donor	17445920	17448817	.	+	.	gene_id "alternative_donor.701"; transcript_id "alternative_donor.701"; gene_name "CUFF.2104"; flanks "17445920-,17448817^"; structure "1^,2^"; splice_chain "17445920^,17448385^";
chr19	juncbase	alternative_donor	17447843	17448817	.	+	.	gene_id "alternative_donor.702"; transcript_id "alternative_donor.702"; gene_name "CUFF.2104"; flanks "17447843-,17448817^"; structure "1^,2^"; splice_chain "17447843^,17448385^";
chr19	juncbase	alternative_donor	17448456	17448817	.	+	.	gene_id "alternative_donor.703"; transcript_id "alternative_donor.703"; gene_name "CUFF.2104"; flanks "17448456-,17448817^"; structure "1^,2^"; splice_chain "17448385^,17448456^";
chr19	juncbase	alternative_donor	17448078	17448817	.	+	.	gene_id "alternative_donor.704"; transcript_id "alternative_donor.704"; gene_name "CUFF.2104"; flanks "17448078-,17448817^"; structure "1^,2^"; splice_chain "17448078^,17448385^";
chr19	juncbase	alternative_donor	17448473	17448817	.	+	.	gene_id "alternative_donor.705"; transcript_id "alternative_donor.705"; gene_name "CUFF.2104"; flanks "17448473-,17448817^"; structure "1^,2^"; splice_chain "17448385^,17448473^";
chr19	juncbase	alternative_donor	17447966	17448817	.	+	.	gene_id "alternative_donor.706"; transcript_id "alternative_donor.706"; gene_name "CUFF.2104"; flanks "17447966-,17448817^"; structure "1^,2^"; splice_chain "17447966^,17448385^";
chr19	juncbase	jcn_only_AD	52266770	52271898	.	+	.	gene_id "jcn_only_AD.879"; transcript_id "jcn_only_AD.879"; gene_name "CUFF.2181"; flanks "52266770-,52271898^"; structure "1^,2^"; splice_chain "52266770^,52271785^";
chr19	juncbase	jcn_only_AD	52264483	52271898	.	+	.	gene_id "jcn_only_AD.880"; transcript_id "jcn_only_AD.880"; gene_name "CUFF.2181"; flanks "52264483-,52271898^"; structure "1^,2^"; splice_chain "52264483^,52271785^";
chr19	juncbase	jcn_only_AD	52265788	52271898	.	+	.	gene_id "jcn_only_AD.881"; transcript_id "jcn_only_AD.881"; gene_name "CUFF.2181"; flanks "52265788-,52271898^"; structure "1^,2^"; splice_chain "52265788^,52271785^";
chr19	juncbase	cassette	54656736	54657234	.	+	.	gene_id "cassette.449"; transcript_id "cassette.449"; gene_name "CUFF.2186"; flanks "54656736-,54657234^"; structure "0,1-2^"; splice_chain ",54656918-54657130^";
chr19	juncbase	jcn_only_AA	54657577	54658996	.	+	.	gene_id "jcn_only_AA.722"; transcript_id "jcn_only_AA.722"; gene_name "CUFF.2186"; flanks "54657577-,54658996^"; structure "1-,2-"; splice_chain "54657681-,54658996-";
chr19	juncbase	jcn_only_AA	54657577	54659047	.	+	.	gene_id "jcn_only_AA.723"; transcript_id "jcn_only_AA.723"; gene_name "CUFF.2186"; flanks "54657577-,54659047^"; structure "1-,2-"; splice_chain "54657681-,54659047-";
chr19	juncbase	alternative_acceptor	20287618	20349097	.	-	.	gene_id "alternative_acceptor.546"; transcript_id "alternative_acceptor.546"; gene_name "CUFF.2112"; flanks "20287618-,20349097^"; structure "1-,2-"; splice_chain "20339292-,20287618-";
chr19	juncbase	alternative_acceptor	20243396	20349097	.	-	.	gene_id "alternative_acceptor.547"; transcript_id "alternative_acceptor.547"; gene_name "CUFF.2112"; flanks "20243396-,20349097^"; structure "1-,2-"; splice_chain "20339292-,20243396-";
chr19	juncbase	alternative_donor	16594741	16593596	.	-	.	gene_id "alternative_donor.707"; transcript_id "alternative_donor.707"; gene_name "CUFF.2099"; flanks "16594741-,16593596^"; structure "1^,2^"; splice_chain "16594741^,16594573^";
chr19	juncbase	jcn_only_AD	16187507	16192723	.	+	.	gene_id "jcn_only_AD.882"; transcript_id "jcn_only_AD.882"; gene_name "CUFF.2093"; flanks "16187507-,16192723^"; structure "1^,2^"; splice_chain "16186982^,16187507^";
chr19	juncbase	jcn_only_AD	16191252	16192723	.	+	.	gene_id "jcn_only_AD.883"; transcript_id "jcn_only_AD.883"; gene_name "CUFF.2093"; flanks "16191252-,16192723^"; structure "1^,2^"; splice_chain "16186982^,16191252^";
chr19	juncbase	jcn_only_AD	16191885	16192723	.	+	.	gene_id "jcn_only_AD.884"; transcript_id "jcn_only_AD.884"; gene_name "CUFF.2093"; flanks "16191885-,16192723^"; structure "1^,2^"; splice_chain "16186982^,16191885^";
chr19	juncbase	intron_retention	11474511	11474837	.	+	.	gene_id "intron_retention.663"; transcript_id "intron_retention.663"; gene_name ""; flanks "11474511-,11474837^"; structure "0,1^2-"; splice_chain ",11474511^11474837-";
chr19	juncbase	alternative_donor	44764361	44768467	.	+	.	gene_id "alternative_donor.708"; transcript_id "alternative_donor.708"; gene_name "CUFF.2155"; flanks "44764361-,44768467^"; structure "1^,2^"; splice_chain "44764155^,44764361^";
chr19	juncbase	alternative_donor	44764091	44768467	.	+	.	gene_id "alternative_donor.709"; transcript_id "alternative_donor.709"; gene_name "CUFF.2155"; flanks "44764091-,44768467^"; structure "1^,2^"; splice_chain "44764091^,44764155^";
chr19	juncbase	intron_retention	51527301	51526484	.	-	.	gene_id "intron_retention.664"; transcript_id "intron_retention.664"; gene_name "CUFF.2175"; flanks "51527301-,51526484^"; structure "0,1^2-"; splice_chain ",51527301^51526484-";
chr19	juncbase	jcn_only_AD	33991844	33984243	.	-	.	gene_id "jcn_only_AD.885"; transcript_id "jcn_only_AD.885"; gene_name ""; flanks "33991844-,33984243^"; structure "1^,2^"; splice_chain "34003499^,33991844^";
chr19	juncbase	jcn_only_AD	34001934	33984243	.	-	.	gene_id "jcn_only_AD.886"; transcript_id "jcn_only_AD.886"; gene_name ""; flanks "34001934-,33984243^"; structure "1^,2^"; splice_chain "34003499^,34001934^";
chr19	juncbase	jcn_only_AA	17581516	17597372	.	+	.	gene_id "jcn_only_AA.724"; transcript_id "jcn_only_AA.724"; gene_name "CUFF.2103,CUFF.2104"; flanks "17581516-,17597372^"; structure "1-,2-"; splice_chain "17594691-,17597372-";
chr19	juncbase	jcn_only_AA	17581516	17598269	.	+	.	gene_id "jcn_only_AA.725"; transcript_id "jcn_only_AA.725"; gene_name "CUFF.2103,CUFF.2104"; flanks "17581516-,17598269^"; structure "1-,2-"; splice_chain "17594691-,17598269-";
chr19	juncbase	intron_retention	52909896	52918377	.	+	.	gene_id "intron_retention.665"; transcript_id "intron_retention.665"; gene_name ""; flanks "52909896-,52918377^"; structure "0,1^2-"; splice_chain ",52909896^52918377-";
chr19	juncbase	jcn_only_AD	16187507	16192723	.	+	.	gene_id "jcn_only_AD.887"; transcript_id "jcn_only_AD.887"; gene_name "CUFF.2093"; flanks "16187507-,16192723^"; structure "1^,2^"; splice_chain "16187507^,16191252^";
chr19	juncbase	jcn_only_AD	16191885	16192723	.	+	.	gene_id "jcn_only_AD.888"; transcript_id "jcn_only_AD.888"; gene_name "CUFF.2093"; flanks "16191885-,16192723^"; structure "1^,2^"; splice_chain "16191252^,16191885^";
chr19	juncbase	jcn_only_AD	16186982	16192723	.	+	.	gene_id "jcn_only_AD.889"; transcript_id "jcn_only_AD.889"; gene_name "CUFF.2093"; flanks "16186982-,16192723^"; structure "1^,2^"; splice_chain "16186982^,16191252^";
chr19	juncbase	intron_retention	39924158	39924058	.	-	.	gene_id "intron_retention.666"; transcript_id "intron_retention.666"; gene_name "CUFF.2139"; flanks "39924158-,39924058^"; structure "0,1^2-"; splice_chain ",39924158^39924058-";
chr19	juncbase	jcn_only_AD	4323234	4323345	.	+	.	gene_id "jcn_only_AD.890"; transcript_id "jcn_only_AD.890"; gene_name "CUFF.2048"; flanks "4323234-,4323345^"; structure "1^,2^"; splice_chain "4323143^,4323234^";
chr19	juncbase	jcn_only_AD	4323210	4323345	.	+	.	gene_id "jcn_only_AD.891"; transcript_id "jcn_only_AD.891"; gene_name "CUFF.2048"; flanks "4323210-,4323345^"; structure "1^,2^"; splice_chain "4323143^,4323210^";
chr19	juncbase	intron_retention	10213244	10207249	.	-	.	gene_id "intron_retention.667"; transcript_id "intron_retention.667"; gene_name "CUFF.2069"; flanks "10213244-,10207249^"; structure "0,1^2-"; splice_chain ",10213244^10207249-";
chr19	juncbase	intron_retention	17449380	17449990	.	+	.	gene_id "intron_retention.668"; transcript_id "intron_retention.668"; gene_name "CUFF.2104"; flanks "17449380-,17449990^"; structure "0,1^2-"; splice_chain ",17449380^17449990-";
chr19	juncbase	alternative_donor	1438891	1440018	.	+	.	gene_id "alternative_donor.710"; transcript_id "alternative_donor.710"; gene_name "CUFF.2044"; flanks "1438891-,1440018^"; structure "1^,2^"; splice_chain "1438891^,1439825^";
chr19	juncbase	alternative_acceptor	54648068	54649331	.	+	.	gene_id "alternative_acceptor.548"; transcript_id "alternative_acceptor.548"; gene_name "CUFF.2186"; flanks "54648068-,54649331^"; structure "1-,2-"; splice_chain "54649278-,54649331-";
chr19	juncbase	alternative_acceptor	54648068	54649334	.	+	.	gene_id "alternative_acceptor.549"; transcript_id "alternative_acceptor.549"; gene_name "CUFF.2186"; flanks "54648068-,54649334^"; structure "1-,2-"; splice_chain "54649278-,54649334-";
chr19	juncbase	alternative_acceptor	40909769	40913813	.	-	.	gene_id "alternative_acceptor.550"; transcript_id "alternative_acceptor.550"; gene_name "CUFF.2142"; flanks "40909769-,40913813^"; structure "1-,2-"; splice_chain "40913626-,40909769-";
chr19	juncbase	jcn_only_AD	45254637	45259489	.	+	.	gene_id "jcn_only_AD.892"; transcript_id "jcn_only_AD.892"; gene_name "CUFF.2157"; flanks "45254637-,45259489^"; structure "1^,2^"; splice_chain "45254637^,45258731^";
chr19	juncbase	jcn_only_AA	11468415	11470147	.	+	.	gene_id "jcn_only_AA.726"; transcript_id "jcn_only_AA.726"; gene_name ""; flanks "11468415-,11470147^"; structure "1-,2-"; splice_chain "11470147-,11470208-";
chr19	juncbase	jcn_only_AA	11468415	11470283	.	+	.	gene_id "jcn_only_AA.727"; transcript_id "jcn_only_AA.727"; gene_name ""; flanks "11468415-,11470283^"; structure "1-,2-"; splice_chain "11470208-,11470283-";
chr19	juncbase	intron_retention	11470396	11470497	.	+	.	gene_id "intron_retention.669"; transcript_id "intron_retention.669"; gene_name "CUFF.2072"; flanks "11470396-,11470497^"; structure "0,1^2-"; splice_chain ",11470396^11470497-";
chr19	juncbase	intron_retention	18120848	18121005	.	+	.	gene_id "intron_retention.670"; transcript_id "intron_retention.670"; gene_name "CUFF.2106"; flanks "18120848-,18121005^"; structure "0,1^2-"; splice_chain ",18120848^18121005-";
chr19	juncbase	intron_retention	1438579	1438806	.	+	.	gene_id "intron_retention.671"; transcript_id "intron_retention.671"; gene_name "CUFF.2044"; flanks "1438579-,1438806^"; structure "0,1^2-"; splice_chain ",1438579^1438806-";
chr19	juncbase	alternative_donor	32851524	32873373	.	+	.	gene_id "alternative_donor.711"; transcript_id "alternative_donor.711"; gene_name "CUFF.2117"; flanks "32851524-,32873373^"; structure "1^,2^"; splice_chain "32851524^,32871526^";
chr19	juncbase	jcn_only_AA	41533164	41533448	.	-	.	gene_id "jcn_only_AA.728"; transcript_id "jcn_only_AA.728"; gene_name "CUFF.2146"; flanks "41533164-,41533448^"; structure "1-,2-"; splice_chain "41533169-,41533164-";
chr19	juncbase	jcn_only_AD	39924162	39924058	.	-	.	gene_id "jcn_only_AD.893"; transcript_id "jcn_only_AD.893"; gene_name "CUFF.2129,CUFF.2139"; flanks "39924162-,39924058^"; structure "1^,2^"; splice_chain "39924162^,39924134^";
chr19	juncbase	jcn_only_AD	39924158	39924058	.	-	.	gene_id "jcn_only_AD.894"; transcript_id "jcn_only_AD.894"; gene_name "CUFF.2129,CUFF.2139"; flanks "39924158-,39924058^"; structure "1^,2^"; splice_chain "39924158^,39924134^";
chr19	juncbase	alternative_donor	39924162	39924058	.	-	.	gene_id "alternative_donor.712"; transcript_id "alternative_donor.712"; gene_name "CUFF.2139"; flanks "39924162-,39924058^"; structure "1^,2^"; splice_chain "39924162^,39924158^";
chr19	juncbase	alternative_donor	39924134	39924058	.	-	.	gene_id "alternative_donor.713"; transcript_id "alternative_donor.713"; gene_name "CUFF.2139"; flanks "39924134-,39924058^"; structure "1^,2^"; splice_chain "39924158^,39924134^";
chr19	juncbase	alternative_donor	4323234	4323345	.	+	.	gene_id "alternative_donor.714"; transcript_id "alternative_donor.714"; gene_name "CUFF.2048"; flanks "4323234-,4323345^"; structure "1^,2^"; splice_chain "4323143^,4323234^";
chr19	juncbase	alternative_donor	4323210	4323345	.	+	.	gene_id "alternative_donor.715"; transcript_id "alternative_donor.715"; gene_name "CUFF.2048"; flanks "4323210-,4323345^"; structure "1^,2^"; splice_chain "4323143^,4323210^";
chr19	juncbase	jcn_only_AA	52917621	52918377	.	+	.	gene_id "jcn_only_AA.729"; transcript_id "jcn_only_AA.729"; gene_name "CUFF.2182"; flanks "52917621-,52918377^"; structure "1-,2-"; splice_chain "52918192-,52918377-";
chr19	juncbase	alternative_acceptor	14866656	14867050	.	-	.	gene_id "alternative_acceptor.551"; transcript_id "alternative_acceptor.551"; gene_name "CUFF.2092"; flanks "14866656-,14867050^"; structure "1-,2-"; splice_chain "14866689-,14866656-";
chr19	juncbase	jcn_only_AA	1438891	1439715	.	+	.	gene_id "jcn_only_AA.730"; transcript_id "jcn_only_AA.730"; gene_name ""; flanks "1438891-,1439715^"; structure "1-,2-"; splice_chain "1439715-,1440018-";
chr19	juncbase	jcn_only_AA	1438891	1439605	.	+	.	gene_id "jcn_only_AA.731"; transcript_id "jcn_only_AA.731"; gene_name ""; flanks "1438891-,1439605^"; structure "1-,2-"; splice_chain "1439605-,1440018-";
chr19	juncbase	jcn_only_AA	1438891	1439960	.	+	.	gene_id "jcn_only_AA.732"; transcript_id "jcn_only_AA.732"; gene_name ""; flanks "1438891-,1439960^"; structure "1-,2-"; splice_chain "1439960-,1440018-";
chr19	juncbase	jcn_only_AA	1438891	1440025	.	+	.	gene_id "jcn_only_AA.733"; transcript_id "jcn_only_AA.733"; gene_name ""; flanks "1438891-,1440025^"; structure "1-,2-"; splice_chain "1440018-,1440025-";
chr19	juncbase	jcn_only_AA	1438891	1439967	.	+	.	gene_id "jcn_only_AA.734"; transcript_id "jcn_only_AA.734"; gene_name ""; flanks "1438891-,1439967^"; structure "1-,2-"; splice_chain "1439967-,1440018-";
chr19	juncbase	alternative_donor	44764155	44768467	.	+	.	gene_id "alternative_donor.716"; transcript_id "alternative_donor.716"; gene_name "CUFF.2155"; flanks "44764155-,44768467^"; structure "1^,2^"; splice_chain "44764091^,44764155^";
chr19	juncbase	alternative_donor	44764361	44768467	.	+	.	gene_id "alternative_donor.717"; transcript_id "alternative_donor.717"; gene_name "CUFF.2155"; flanks "44764361-,44768467^"; structure "1^,2^"; splice_chain "44764091^,44764361^";
chr19	juncbase	alternative_donor	33892627	33882385	.	-	.	gene_id "alternative_donor.718"; transcript_id "alternative_donor.718"; gene_name "CUFF.2129"; flanks "33892627-,33882385^"; structure "1^,2^"; splice_chain "33892627^,33886996^";
chr19	juncbase	alternative_donor	33886016	33882385	.	-	.	gene_id "alternative_donor.719"; transcript_id "alternative_donor.719"; gene_name "CUFF.2129"; flanks "33886016-,33882385^"; structure "1^,2^"; splice_chain "33886996^,33886016^";
chr19	juncbase	jcn_only_AA	4304758	4306021	.	+	.	gene_id "jcn_only_AA.735"; transcript_id "jcn_only_AA.735"; gene_name "CUFF.2048,CUFF.2155"; flanks "4304758-,4306021^"; structure "1-,2-"; splice_chain "4305943-,4306021-";
chr19	juncbase	jcn_only_AA	4304758	4305982	.	+	.	gene_id "jcn_only_AA.736"; transcript_id "jcn_only_AA.736"; gene_name "CUFF.2048,CUFF.2155"; flanks "4304758-,4305982^"; structure "1-,2-"; splice_chain "4305943-,4305982-";
chr19	juncbase	jcn_only_AD	33967986	33954968	.	-	.	gene_id "jcn_only_AD.895"; transcript_id "jcn_only_AD.895"; gene_name "CUFF.2129"; flanks "33967986-,33954968^"; structure "1^,2^"; splice_chain "33968953^,33967986^";
chr19	juncbase	jcn_only_AD	33968952	33954968	.	-	.	gene_id "jcn_only_AD.896"; transcript_id "jcn_only_AD.896"; gene_name "CUFF.2129"; flanks "33968952-,33954968^"; structure "1^,2^"; splice_chain "33968953^,33968952^";
chr19	juncbase	intron_retention	50309034	50309129	.	+	.	gene_id "intron_retention.672"; transcript_id "intron_retention.672"; gene_name "CUFF.2167"; flanks "50309034-,50309129^"; structure "0,1^2-"; splice_chain ",50309034^50309129-";
chr19	juncbase	alternative_acceptor	11468415	11470147	.	+	.	gene_id "alternative_acceptor.552"; transcript_id "alternative_acceptor.552"; gene_name "CUFF.2072"; flanks "11468415-,11470147^"; structure "1-,2-"; splice_chain "11470147-,11470283-";
chr19	juncbase	alternative_acceptor	11468415	11470208	.	+	.	gene_id "alternative_acceptor.553"; transcript_id "alternative_acceptor.553"; gene_name "CUFF.2072"; flanks "11468415-,11470208^"; structure "1-,2-"; splice_chain "11470208-,11470283-";
chr19	juncbase	cassette	52905281	52909160	.	+	.	gene_id "cassette.450"; transcript_id "cassette.450"; gene_name "CUFF.2182"; flanks "52905281-,52909160^"; structure "0,1-2^"; splice_chain ",52905682-52905798^";
chr19	juncbase	cassette	56312938	56307616	.	-	.	gene_id "cassette.451"; transcript_id "cassette.451"; gene_name "CUFF.2191"; flanks "56312938-,56307616^"; structure "0,1-2^"; splice_chain ",56309670-56309595^";
chr19	juncbase	intron_retention	39926298	39924401	.	-	.	gene_id "intron_retention.673"; transcript_id "intron_retention.673"; gene_name "CUFF.2139"; flanks "39926298-,39924401^"; structure "0,1^2-"; splice_chain ",39926298^39924401-";
chr19	juncbase	cassette	49335923	49318398	.	-	.	gene_id "cassette.452"; transcript_id "cassette.452"; gene_name "CUFF.2165"; flanks "49335923-,49318398^"; structure "0,1-2^"; splice_chain ",49335016-49334925^";
chr19	juncbase	alternative_acceptor	1438891	1439715	.	+	.	gene_id "alternative_acceptor.554"; transcript_id "alternative_acceptor.554"; gene_name "CUFF.2044,CUFF.2104"; flanks "1438891-,1439715^"; structure "1-,2-"; splice_chain "1439605-,1439715-";
chr19	juncbase	alternative_acceptor	1438891	1440018	.	+	.	gene_id "alternative_acceptor.555"; transcript_id "alternative_acceptor.555"; gene_name "CUFF.2044,CUFF.2104"; flanks "1438891-,1440018^"; structure "1-,2-"; splice_chain "1439605-,1440018-";
chr19	juncbase	alternative_acceptor	1438891	1439960	.	+	.	gene_id "alternative_acceptor.556"; transcript_id "alternative_acceptor.556"; gene_name "CUFF.2044,CUFF.2104"; flanks "1438891-,1439960^"; structure "1-,2-"; splice_chain "1439605-,1439960-";
chr19	juncbase	alternative_acceptor	1438891	1440025	.	+	.	gene_id "alternative_acceptor.557"; transcript_id "alternative_acceptor.557"; gene_name "CUFF.2044,CUFF.2104"; flanks "1438891-,1440025^"; structure "1-,2-"; splice_chain "1439605-,1440025-";
chr19	juncbase	alternative_acceptor	1438891	1439967	.	+	.	gene_id "alternative_acceptor.558"; transcript_id "alternative_acceptor.558"; gene_name "CUFF.2044,CUFF.2104"; flanks "1438891-,1439967^"; structure "1-,2-"; splice_chain "1439605-,1439967-";
chr19	juncbase	alternative_donor	11041000	11044037	.	+	.	gene_id "alternative_donor.720"; transcript_id "alternative_donor.720"; gene_name "CUFF.2071"; flanks "11041000-,11044037^"; structure "1^,2^"; splice_chain "11041000^,11042936^";
chr19	juncbase	jcn_only_AD	51538062	51537896	.	-	.	gene_id "jcn_only_AD.897"; transcript_id "jcn_only_AD.897"; gene_name "CUFF.2177"; flanks "51538062-,51537896^"; structure "1^,2^"; splice_chain "51538062^,51538051^";
chr19	juncbase	cassette	49314241	49310331	.	-	.	gene_id "cassette.453"; transcript_id "cassette.453"; gene_name "CUFF.2163"; flanks "49314241-,49310331^"; structure "0,1-2^"; splice_chain ",49311568-49311013^";
chr19	juncbase	jcn_only_AA	20287618	20349097	.	-	.	gene_id "jcn_only_AA.737"; transcript_id "jcn_only_AA.737"; gene_name "CUFF.2112"; flanks "20287618-,20349097^"; structure "1-,2-"; splice_chain "20287618-,20243396-";
chr19	juncbase	jcn_only_AA	20339292	20349097	.	-	.	gene_id "jcn_only_AA.738"; transcript_id "jcn_only_AA.738"; gene_name "CUFF.2112"; flanks "20339292-,20349097^"; structure "1-,2-"; splice_chain "20339292-,20243396-";
chr19	juncbase	alternative_donor	56348076	56344281	.	-	.	gene_id "alternative_donor.721"; transcript_id "alternative_donor.721"; gene_name "CUFF.2191"; flanks "56348076-,56344281^"; structure "1^,2^"; splice_chain "56348076^,56347702^";
chr19	juncbase	cassette	17598338	17599817	.	+	.	gene_id "cassette.454"; transcript_id "cassette.454"; gene_name "CUFF.2103"; flanks "17598338-,17599817^"; structure "0,1-2^"; splice_chain ",17599657-17599748^";
chr19	juncbase	jcn_only_AD	14887538	14885118	.	-	.	gene_id "jcn_only_AD.898"; transcript_id "jcn_only_AD.898"; gene_name "CUFF.2092"; flanks "14887538-,14885118^"; structure "1^,2^"; splice_chain "14887538^,14887216^";
chr19	juncbase	intron_retention	35642231	35642343	.	+	.	gene_id "intron_retention.674"; transcript_id "intron_retention.674"; gene_name "CUFF.2130"; flanks "35642231-,35642343^"; structure "0,1^2-"; splice_chain ",35642231^35642343-";
chr19	juncbase	jcn_only_AA	4304758	4306021	.	+	.	gene_id "jcn_only_AA.739"; transcript_id "jcn_only_AA.739"; gene_name "CUFF.2048"; flanks "4304758-,4306021^"; structure "1-,2-"; splice_chain "4305982-,4306021-";
chr19	juncbase	jcn_only_AA	4304758	4305943	.	+	.	gene_id "jcn_only_AA.740"; transcript_id "jcn_only_AA.740"; gene_name "CUFF.2048"; flanks "4304758-,4305943^"; structure "1-,2-"; splice_chain "4305943-,4305982-";
chr19	juncbase	jcn_only_AD	52271785	52271898	.	+	.	gene_id "jcn_only_AD.899"; transcript_id "jcn_only_AD.899"; gene_name "CUFF.2181"; flanks "52271785-,52271898^"; structure "1^,2^"; splice_chain "52265788^,52271785^";
chr19	juncbase	jcn_only_AD	52266770	52271898	.	+	.	gene_id "jcn_only_AD.900"; transcript_id "jcn_only_AD.900"; gene_name "CUFF.2181"; flanks "52266770-,52271898^"; structure "1^,2^"; splice_chain "52265788^,52266770^";
chr19	juncbase	jcn_only_AD	52264483	52271898	.	+	.	gene_id "jcn_only_AD.901"; transcript_id "jcn_only_AD.901"; gene_name "CUFF.2181"; flanks "52264483-,52271898^"; structure "1^,2^"; splice_chain "52264483^,52265788^";
chr19	juncbase	jcn_only_AA	49335989	49337533	.	-	.	gene_id "jcn_only_AA.741"; transcript_id "jcn_only_AA.741"; gene_name "CUFF.2165"; flanks "49335989-,49337533^"; structure "1-,2-"; splice_chain "49336009-,49335989-";
chr19	juncbase	alternative_acceptor	1438891	1439715	.	+	.	gene_id "alternative_acceptor.559"; transcript_id "alternative_acceptor.559"; gene_name "CUFF.2044"; flanks "1438891-,1439715^"; structure "1-,2-"; splice_chain "1439715-,1440025-";
chr19	juncbase	alternative_acceptor	1438891	1440018	.	+	.	gene_id "alternative_acceptor.560"; transcript_id "alternative_acceptor.560"; gene_name "CUFF.2044"; flanks "1438891-,1440018^"; structure "1-,2-"; splice_chain "1440018-,1440025-";
chr19	juncbase	alternative_acceptor	1438891	1439605	.	+	.	gene_id "alternative_acceptor.561"; transcript_id "alternative_acceptor.561"; gene_name "CUFF.2044"; flanks "1438891-,1439605^"; structure "1-,2-"; splice_chain "1439605-,1440025-";
chr19	juncbase	alternative_acceptor	1438891	1439960	.	+	.	gene_id "alternative_acceptor.562"; transcript_id "alternative_acceptor.562"; gene_name "CUFF.2044"; flanks "1438891-,1439960^"; structure "1-,2-"; splice_chain "1439960-,1440025-";
chr19	juncbase	alternative_acceptor	1438891	1439967	.	+	.	gene_id "alternative_acceptor.563"; transcript_id "alternative_acceptor.563"; gene_name "CUFF.2044"; flanks "1438891-,1439967^"; structure "1-,2-"; splice_chain "1439967-,1440025-";
chr19	juncbase	alternative_donor	45254637	45259489	.	+	.	gene_id "alternative_donor.722"; transcript_id "alternative_donor.722"; gene_name "CUFF.2157"; flanks "45254637-,45259489^"; structure "1^,2^"; splice_chain "45254637^,45258731^";
chr19	juncbase	intron_retention	50306633	50308710	.	+	.	gene_id "intron_retention.675"; transcript_id "intron_retention.675"; gene_name "CUFF.2167"; flanks "50306633-,50308710^"; structure "0,1^2-"; splice_chain ",50306633^50308710-";
chr19	juncbase	jcn_only_AA	6192064	6199491	.	-	.	gene_id "jcn_only_AA.742"; transcript_id "jcn_only_AA.742"; gene_name ""; flanks "6192064-,6199491^"; structure "1-,2-"; splice_chain "6192064-,6192040-";
chr19	juncbase	jcn_only_AA	6176454	6199491	.	-	.	gene_id "jcn_only_AA.743"; transcript_id "jcn_only_AA.743"; gene_name ""; flanks "6176454-,6199491^"; structure "1-,2-"; splice_chain "6192040-,6176454-";
chr19	juncbase	cassette	18118180	18119520	.	+	.	gene_id "cassette.455"; transcript_id "cassette.455"; gene_name "CUFF.2106"; flanks "18118180-,18119520^"; structure "0,1-2^"; splice_chain ",18118399-18118651^";
chr19	juncbase	alternative_donor	44764155	44768467	.	+	.	gene_id "alternative_donor.723"; transcript_id "alternative_donor.723"; gene_name "CUFF.2155"; flanks "44764155-,44768467^"; structure "1^,2^"; splice_chain "44764155^,44764361^";
chr19	juncbase	alternative_donor	44764091	44768467	.	+	.	gene_id "alternative_donor.724"; transcript_id "alternative_donor.724"; gene_name "CUFF.2155"; flanks "44764091-,44768467^"; structure "1^,2^"; splice_chain "44764091^,44764361^";
chr19	juncbase	alternative_donor	6148242	6047515	.	-	.	gene_id "alternative_donor.725"; transcript_id "alternative_donor.725"; gene_name ""; flanks "6148242-,6047515^"; structure "1^,2^"; splice_chain "6148242^,6110404^";
chr19	juncbase	alternative_donor	6049147	6047515	.	-	.	gene_id "alternative_donor.726"; transcript_id "alternative_donor.726"; gene_name ""; flanks "6049147-,6047515^"; structure "1^,2^"; splice_chain "6110404^,6049147^";
chr19	juncbase	alternative_donor	6057173	6047515	.	-	.	gene_id "alternative_donor.727"; transcript_id "alternative_donor.727"; gene_name ""; flanks "6057173-,6047515^"; structure "1^,2^"; splice_chain "6110404^,6057173^";
chr19	juncbase	alternative_donor	6072016	6047515	.	-	.	gene_id "alternative_donor.728"; transcript_id "alternative_donor.728"; gene_name ""; flanks "6072016-,6047515^"; structure "1^,2^"; splice_chain "6110404^,6072016^";
chr19	juncbase	intron_retention	50285226	50296293	.	+	.	gene_id "intron_retention.676"; transcript_id "intron_retention.676"; gene_name ""; flanks "50285226-,50296293^"; structure "0,1^2-"; splice_chain ",50285226^50296293-";
chr19	juncbase	intron_retention	1440240	1440348	.	+	.	gene_id "intron_retention.677"; transcript_id "intron_retention.677"; gene_name ""; flanks "1440240-,1440348^"; structure "0,1^2-"; splice_chain ",1440240^1440348-";
chr19	juncbase	jcn_only_AA	50308833	50308982	.	+	.	gene_id "jcn_only_AA.744"; transcript_id "jcn_only_AA.744"; gene_name "CUFF.2167"; flanks "50308833-,50308982^"; structure "1-,2-"; splice_chain "50308918-,50308982-";
chr19	juncbase	alternative_donor	35642376	35642536	.	+	.	gene_id "alternative_donor.729"; transcript_id "alternative_donor.729"; gene_name "CUFF.2130"; flanks "35642376-,35642536^"; structure "1^,2^"; splice_chain "35642376^,35642385^";
chr19	juncbase	jcn_only_AA	17581516	17594691	.	+	.	gene_id "jcn_only_AA.745"; transcript_id "jcn_only_AA.745"; gene_name "CUFF.2103"; flanks "17581516-,17594691^"; structure "1-,2-"; splice_chain "17594691-,17597372-";
chr19	juncbase	jcn_only_AA	17581516	17598269	.	+	.	gene_id "jcn_only_AA.746"; transcript_id "jcn_only_AA.746"; gene_name "CUFF.2103"; flanks "17581516-,17598269^"; structure "1-,2-"; splice_chain "17597372-,17598269-";
chr19	juncbase	intron_retention	17448473	17448708	.	+	.	gene_id "intron_retention.678"; transcript_id "intron_retention.678"; gene_name "CUFF.2104"; flanks "17448473-,17448708^"; structure "0,1^2-"; splice_chain ",17448473^17448708-";
chr19	juncbase	jcn_only_AA	1438891	1439715	.	+	.	gene_id "jcn_only_AA.747"; transcript_id "jcn_only_AA.747"; gene_name "CUFF.2044,CUFF.2104"; flanks "1438891-,1439715^"; structure "1-,2-"; splice_chain "1439605-,1439715-";
chr19	juncbase	jcn_only_AA	1438891	1440018	.	+	.	gene_id "jcn_only_AA.748"; transcript_id "jcn_only_AA.748"; gene_name "CUFF.2044,CUFF.2104"; flanks "1438891-,1440018^"; structure "1-,2-"; splice_chain "1439605-,1440018-";
chr19	juncbase	jcn_only_AA	1438891	1439960	.	+	.	gene_id "jcn_only_AA.749"; transcript_id "jcn_only_AA.749"; gene_name "CUFF.2044,CUFF.2104"; flanks "1438891-,1439960^"; structure "1-,2-"; splice_chain "1439605-,1439960-";
chr19	juncbase	jcn_only_AA	1438891	1440025	.	+	.	gene_id "jcn_only_AA.750"; transcript_id "jcn_only_AA.750"; gene_name "CUFF.2044,CUFF.2104"; flanks "1438891-,1440025^"; structure "1-,2-"; splice_chain "1439605-,1440025-";
chr19	juncbase	jcn_only_AA	1438891	1439967	.	+	.	gene_id "jcn_only_AA.751"; transcript_id "jcn_only_AA.751"; gene_name "CUFF.2044,CUFF.2104"; flanks "1438891-,1439967^"; structure "1-,2-"; splice_chain "1439605-,1439967-";
chr19	juncbase	alternative_acceptor	1438891	1439715	.	+	.	gene_id "alternative_acceptor.564"; transcript_id "alternative_acceptor.564"; gene_name "CUFF.2044"; flanks "1438891-,1439715^"; structure "1-,2-"; splice_chain "1439715-,1439967-";
chr19	juncbase	alternative_acceptor	1438891	1440018	.	+	.	gene_id "alternative_acceptor.565"; transcript_id "alternative_acceptor.565"; gene_name "CUFF.2044"; flanks "1438891-,1440018^"; structure "1-,2-"; splice_chain "1439967-,1440018-";
chr19	juncbase	alternative_acceptor	1438891	1439605	.	+	.	gene_id "alternative_acceptor.566"; transcript_id "alternative_acceptor.566"; gene_name "CUFF.2044"; flanks "1438891-,1439605^"; structure "1-,2-"; splice_chain "1439605-,1439967-";
chr19	juncbase	alternative_acceptor	1438891	1439960	.	+	.	gene_id "alternative_acceptor.567"; transcript_id "alternative_acceptor.567"; gene_name "CUFF.2044"; flanks "1438891-,1439960^"; structure "1-,2-"; splice_chain "1439960-,1439967-";
chr19	juncbase	alternative_acceptor	1438891	1440025	.	+	.	gene_id "alternative_acceptor.568"; transcript_id "alternative_acceptor.568"; gene_name "CUFF.2044"; flanks "1438891-,1440025^"; structure "1-,2-"; splice_chain "1439967-,1440025-";
chr19	juncbase	cassette	50305398	50306206	.	+	.	gene_id "cassette.456"; transcript_id "cassette.456"; gene_name "CUFF.2167"; flanks "50305398-,50306206^"; structure "0,1-2^"; splice_chain ",50305791-50305856^";
chr19	juncbase	intron_retention	39924305	39924209	.	-	.	gene_id "intron_retention.679"; transcript_id "intron_retention.679"; gene_name "CUFF.2139"; flanks "39924305-,39924209^"; structure "0,1^2-"; splice_chain ",39924305^39924209-";
chr19	juncbase	jcn_only_AA	6192040	6199487	.	-	.	gene_id "jcn_only_AA.752"; transcript_id "jcn_only_AA.752"; gene_name ""; flanks "6192040-,6199487^"; structure "1-,2-"; splice_chain "6192040-,6148340-";
chr19	juncbase	jcn_only_AA	6176454	6199487	.	-	.	gene_id "jcn_only_AA.753"; transcript_id "jcn_only_AA.753"; gene_name ""; flanks "6176454-,6199487^"; structure "1-,2-"; splice_chain "6176454-,6148340-";
chr19	juncbase	intron_retention	4311876	4323569	.	+	.	gene_id "intron_retention.680"; transcript_id "intron_retention.680"; gene_name ""; flanks "4311876-,4323569^"; structure "0,1^2-"; splice_chain ",4311876^4323569-";
chr19	juncbase	cassette	55084902	55085543	.	+	.	gene_id "cassette.457"; transcript_id "cassette.457"; gene_name "CUFF.2187"; flanks "55084902-,55085543^"; structure "0,1-2^"; splice_chain ",55085298-55085379^";
chr19	juncbase	jcn_only_AD	6148242	6047515	.	-	.	gene_id "jcn_only_AD.902"; transcript_id "jcn_only_AD.902"; gene_name "CUFF.2051,CUFF.2163"; flanks "6148242-,6047515^"; structure "1^,2^"; splice_chain "6148242^,6049147^";
chr19	juncbase	jcn_only_AD	6110404	6047515	.	-	.	gene_id "jcn_only_AD.903"; transcript_id "jcn_only_AD.903"; gene_name "CUFF.2051,CUFF.2163"; flanks "6110404-,6047515^"; structure "1^,2^"; splice_chain "6110404^,6049147^";
chr19	juncbase	jcn_only_AD	6057173	6047515	.	-	.	gene_id "jcn_only_AD.904"; transcript_id "jcn_only_AD.904"; gene_name "CUFF.2051,CUFF.2163"; flanks "6057173-,6047515^"; structure "1^,2^"; splice_chain "6057173^,6049147^";
chr19	juncbase	jcn_only_AD	6072016	6047515	.	-	.	gene_id "jcn_only_AD.905"; transcript_id "jcn_only_AD.905"; gene_name "CUFF.2051,CUFF.2163"; flanks "6072016-,6047515^"; structure "1^,2^"; splice_chain "6072016^,6049147^";
chr19	juncbase	alternative_donor	4323143	4323345	.	+	.	gene_id "alternative_donor.730"; transcript_id "alternative_donor.730"; gene_name "CUFF.2048"; flanks "4323143-,4323345^"; structure "1^,2^"; splice_chain "4323143^,4323234^";
chr19	juncbase	alternative_donor	4323210	4323345	.	+	.	gene_id "alternative_donor.731"; transcript_id "alternative_donor.731"; gene_name "CUFF.2048"; flanks "4323210-,4323345^"; structure "1^,2^"; splice_chain "4323210^,4323234^";
chr19	juncbase	alternative_donor	51537841	51537395	.	-	.	gene_id "alternative_donor.732"; transcript_id "alternative_donor.732"; gene_name "CUFF.2177"; flanks "51537841-,51537395^"; structure "1^,2^"; splice_chain "51537841^,51537681^";
chr19	juncbase	alternative_donor	17445920	17448817	.	+	.	gene_id "alternative_donor.733"; transcript_id "alternative_donor.733"; gene_name "CUFF.2104"; flanks "17445920-,17448817^"; structure "1^,2^"; splice_chain "17445920^,17448473^";
chr19	juncbase	alternative_donor	17448385	17448817	.	+	.	gene_id "alternative_donor.734"; transcript_id "alternative_donor.734"; gene_name "CUFF.2104"; flanks "17448385-,17448817^"; structure "1^,2^"; splice_chain "17448385^,17448473^";
chr19	juncbase	alternative_donor	17447843	17448817	.	+	.	gene_id "alternative_donor.735"; transcript_id "alternative_donor.735"; gene_name "CUFF.2104"; flanks "17447843-,17448817^"; structure "1^,2^"; splice_chain "17447843^,17448473^";
chr19	juncbase	alternative_donor	17448456	17448817	.	+	.	gene_id "alternative_donor.736"; transcript_id "alternative_donor.736"; gene_name "CUFF.2104"; flanks "17448456-,17448817^"; structure "1^,2^"; splice_chain "17448456^,17448473^";
chr19	juncbase	alternative_donor	17448078	17448817	.	+	.	gene_id "alternative_donor.737"; transcript_id "alternative_donor.737"; gene_name "CUFF.2104"; flanks "17448078-,17448817^"; structure "1^,2^"; splice_chain "17448078^,17448473^";
chr19	juncbase	alternative_donor	17447966	17448817	.	+	.	gene_id "alternative_donor.738"; transcript_id "alternative_donor.738"; gene_name "CUFF.2104"; flanks "17447966-,17448817^"; structure "1^,2^"; splice_chain "17447966^,17448473^";
chr19	juncbase	alternative_acceptor	17448473	17448817	.	+	.	gene_id "alternative_acceptor.569"; transcript_id "alternative_acceptor.569"; gene_name "CUFF.2104"; flanks "17448473-,17448817^"; structure "1-,2-"; splice_chain "17448683-,17448817-";
chr19	juncbase	alternative_acceptor	17448473	17448708	.	+	.	gene_id "alternative_acceptor.570"; transcript_id "alternative_acceptor.570"; gene_name "CUFF.2104"; flanks "17448473-,17448708^"; structure "1-,2-"; splice_chain "17448683-,17448708-";
chr19	juncbase	alternative_donor	6049147	6047515	.	-	.	gene_id "alternative_donor.739"; transcript_id "alternative_donor.739"; gene_name "CUFF.2051"; flanks "6049147-,6047515^"; structure "1^,2^"; splice_chain "6148242^,6049147^";
chr19	juncbase	alternative_donor	6110404	6047515	.	-	.	gene_id "alternative_donor.740"; transcript_id "alternative_donor.740"; gene_name "CUFF.2051"; flanks "6110404-,6047515^"; structure "1^,2^"; splice_chain "6148242^,6110404^";
chr19	juncbase	alternative_donor	6057173	6047515	.	-	.	gene_id "alternative_donor.741"; transcript_id "alternative_donor.741"; gene_name "CUFF.2051"; flanks "6057173-,6047515^"; structure "1^,2^"; splice_chain "6148242^,6057173^";
chr19	juncbase	alternative_donor	6072016	6047515	.	-	.	gene_id "alternative_donor.742"; transcript_id "alternative_donor.742"; gene_name "CUFF.2051"; flanks "6072016-,6047515^"; structure "1^,2^"; splice_chain "6148242^,6072016^";
chr19	juncbase	jcn_only_AD	10213244	10207249	.	-	.	gene_id "jcn_only_AD.906"; transcript_id "jcn_only_AD.906"; gene_name "CUFF.2069"; flanks "10213244-,10207249^"; structure "1^,2^"; splice_chain "10213244^,10213228^";
chr19	juncbase	jcn_only_AD	6148242	6047515	.	-	.	gene_id "jcn_only_AD.907"; transcript_id "jcn_only_AD.907"; gene_name "CUFF.2051"; flanks "6148242-,6047515^"; structure "1^,2^"; splice_chain "6148242^,6072016^";
chr19	juncbase	jcn_only_AD	6049147	6047515	.	-	.	gene_id "jcn_only_AD.908"; transcript_id "jcn_only_AD.908"; gene_name "CUFF.2051"; flanks "6049147-,6047515^"; structure "1^,2^"; splice_chain "6072016^,6049147^";
chr19	juncbase	jcn_only_AD	6110404	6047515	.	-	.	gene_id "jcn_only_AD.909"; transcript_id "jcn_only_AD.909"; gene_name "CUFF.2051"; flanks "6110404-,6047515^"; structure "1^,2^"; splice_chain "6110404^,6072016^";
chr19	juncbase	jcn_only_AD	6057173	6047515	.	-	.	gene_id "jcn_only_AD.910"; transcript_id "jcn_only_AD.910"; gene_name "CUFF.2051"; flanks "6057173-,6047515^"; structure "1^,2^"; splice_chain "6072016^,6057173^";
chr19	juncbase	intron_retention	1438891	1439605	.	+	.	gene_id "intron_retention.681"; transcript_id "intron_retention.681"; gene_name ""; flanks "1438891-,1439605^"; structure "0,1^2-"; splice_chain ",1438891^1439605-";
chr19	juncbase	jcn_only_AA	51528922	51529794	.	-	.	gene_id "jcn_only_AA.754"; transcript_id "jcn_only_AA.754"; gene_name "CUFF.2175"; flanks "51528922-,51529794^"; structure "1-,2-"; splice_chain "51528954-,51528922-";
chr19	juncbase	intron_retention	17448473	17448817	.	+	.	gene_id "intron_retention.682"; transcript_id "intron_retention.682"; gene_name "CUFF.2104"; flanks "17448473-,17448817^"; structure "0,1^2-"; splice_chain ",17448473^17448817-";
chr19	juncbase	jcn_only_AD	16191252	16192723	.	+	.	gene_id "jcn_only_AD.911"; transcript_id "jcn_only_AD.911"; gene_name "CUFF.2093"; flanks "16191252-,16192723^"; structure "1^,2^"; splice_chain "16187507^,16191252^";
chr19	juncbase	jcn_only_AD	16191885	16192723	.	+	.	gene_id "jcn_only_AD.912"; transcript_id "jcn_only_AD.912"; gene_name "CUFF.2093"; flanks "16191885-,16192723^"; structure "1^,2^"; splice_chain "16187507^,16191885^";
chr19	juncbase	jcn_only_AD	16186982	16192723	.	+	.	gene_id "jcn_only_AD.913"; transcript_id "jcn_only_AD.913"; gene_name "CUFF.2093"; flanks "16186982-,16192723^"; structure "1^,2^"; splice_chain "16186982^,16187507^";
chr19	juncbase	jcn_only_AD	33977809	33968996	.	-	.	gene_id "jcn_only_AD.914"; transcript_id "jcn_only_AD.914"; gene_name ""; flanks "33977809-,33968996^"; structure "1^,2^"; splice_chain "33978156^,33977809^";
chr19	juncbase	jcn_only_AD	33980902	33968996	.	-	.	gene_id "jcn_only_AD.915"; transcript_id "jcn_only_AD.915"; gene_name ""; flanks "33980902-,33968996^"; structure "1^,2^"; splice_chain "33980902^,33978156^";
chr19	juncbase	alternative_acceptor	1438427	1438810	.	+	.	gene_id "alternative_acceptor.571"; transcript_id "alternative_acceptor.571"; gene_name "CUFF.2044"; flanks "1438427-,1438810^"; structure "1-,2-"; splice_chain "1438806-,1438810-";
chr19	juncbase	alternative_donor	33978156	33968996	.	-	.	gene_id "alternative_donor.743"; transcript_id "alternative_donor.743"; gene_name "CUFF.2129"; flanks "33978156-,33968996^"; structure "1^,2^"; splice_chain "33978156^,33977809^";
chr19	juncbase	alternative_donor	33980902	33968996	.	-	.	gene_id "alternative_donor.744"; transcript_id "alternative_donor.744"; gene_name "CUFF.2129"; flanks "33980902-,33968996^"; structure "1^,2^"; splice_chain "33980902^,33977809^";
chr19	juncbase	intron_retention	17447966	17448817	.	+	.	gene_id "intron_retention.683"; transcript_id "intron_retention.683"; gene_name ""; flanks "17447966-,17448817^"; structure "0,1^2-"; splice_chain ",17447966^17448817-";
chr19	juncbase	jcn_only_AA	49116564	49117965	.	-	.	gene_id "jcn_only_AA.755"; transcript_id "jcn_only_AA.755"; gene_name "CUFF.2164"; flanks "49116564-,49117965^"; structure "1-,2-"; splice_chain "49117884-,49116564-";
chr19	juncbase	jcn_only_AD	52271785	52271898	.	+	.	gene_id "jcn_only_AD.916"; transcript_id "jcn_only_AD.916"; gene_name "CUFF.2181"; flanks "52271785-,52271898^"; structure "1^,2^"; splice_chain "52264483^,52271785^";
chr19	juncbase	jcn_only_AD	52266770	52271898	.	+	.	gene_id "jcn_only_AD.917"; transcript_id "jcn_only_AD.917"; gene_name "CUFF.2181"; flanks "52266770-,52271898^"; structure "1^,2^"; splice_chain "52264483^,52266770^";
chr19	juncbase	jcn_only_AD	52265788	52271898	.	+	.	gene_id "jcn_only_AD.918"; transcript_id "jcn_only_AD.918"; gene_name "CUFF.2181"; flanks "52265788-,52271898^"; structure "1^,2^"; splice_chain "52264483^,52265788^";
chr19	juncbase	alternative_donor	44771114	44777052	.	+	.	gene_id "alternative_donor.745"; transcript_id "alternative_donor.745"; gene_name ""; flanks "44771114-,44777052^"; structure "1^,2^"; splice_chain "44771114^,44771297^";
chr19	juncbase	alternative_acceptor	49335989	49337533	.	-	.	gene_id "alternative_acceptor.572"; transcript_id "alternative_acceptor.572"; gene_name "CUFF.2165"; flanks "49335989-,49337533^"; structure "1-,2-"; splice_chain "49336009-,49335989-";
chr19	juncbase	cassette	17445931	17448817	.	+	.	gene_id "cassette.458"; transcript_id "cassette.458"; gene_name "CUFF.2104"; flanks "17445931-,17448817^"; structure "0,1-2^"; splice_chain ",17447629-17447843^";
chr19	juncbase	alternative_donor	33892627	33882385	.	-	.	gene_id "alternative_donor.746"; transcript_id "alternative_donor.746"; gene_name "CUFF.2129"; flanks "33892627-,33882385^"; structure "1^,2^"; splice_chain "33892627^,33886016^";
chr19	juncbase	alternative_donor	33886996	33882385	.	-	.	gene_id "alternative_donor.747"; transcript_id "alternative_donor.747"; gene_name "CUFF.2129"; flanks "33886996-,33882385^"; structure "1^,2^"; splice_chain "33886996^,33886016^";
chr19	juncbase	alternative_donor	52271785	52271898	.	+	.	gene_id "alternative_donor.748"; transcript_id "alternative_donor.748"; gene_name "CUFF.2181"; flanks "52271785-,52271898^"; structure "1^,2^"; splice_chain "52264483^,52271785^";
chr19	juncbase	alternative_donor	52266770	52271898	.	+	.	gene_id "alternative_donor.749"; transcript_id "alternative_donor.749"; gene_name "CUFF.2181"; flanks "52266770-,52271898^"; structure "1^,2^"; splice_chain "52264483^,52266770^";
chr19	juncbase	alternative_donor	52265788	52271898	.	+	.	gene_id "alternative_donor.750"; transcript_id "alternative_donor.750"; gene_name "CUFF.2181"; flanks "52265788-,52271898^"; structure "1^,2^"; splice_chain "52264483^,52265788^";
chr19	juncbase	jcn_only_AD	39926298	39924401	.	-	.	gene_id "jcn_only_AD.919"; transcript_id "jcn_only_AD.919"; gene_name "CUFF.2139"; flanks "39926298-,39924401^"; structure "1^,2^"; splice_chain "39926298^,39926247^";
chr19	juncbase	alternative_donor	6217965	6216524	.	-	.	gene_id "alternative_donor.751"; transcript_id "alternative_donor.751"; gene_name "CUFF.2052"; flanks "6217965-,6216524^"; structure "1^,2^"; splice_chain "6217965^,6216747^";
chr19	juncbase	jcn_only_AD	16594741	16593596	.	-	.	gene_id "jcn_only_AD.920"; transcript_id "jcn_only_AD.920"; gene_name "CUFF.2099"; flanks "16594741-,16593596^"; structure "1^,2^"; splice_chain "16594741^,16594573^";
chr19	juncbase	alternative_donor	17445920	17448817	.	+	.	gene_id "alternative_donor.752"; transcript_id "alternative_donor.752"; gene_name "CUFF.2104"; flanks "17445920-,17448817^"; structure "1^,2^"; splice_chain "17445920^,17448456^";
chr19	juncbase	alternative_donor	17448385	17448817	.	+	.	gene_id "alternative_donor.753"; transcript_id "alternative_donor.753"; gene_name "CUFF.2104"; flanks "17448385-,17448817^"; structure "1^,2^"; splice_chain "17448385^,17448456^";
chr19	juncbase	alternative_donor	17447843	17448817	.	+	.	gene_id "alternative_donor.754"; transcript_id "alternative_donor.754"; gene_name "CUFF.2104"; flanks "17447843-,17448817^"; structure "1^,2^"; splice_chain "17447843^,17448456^";
chr19	juncbase	alternative_donor	17448078	17448817	.	+	.	gene_id "alternative_donor.755"; transcript_id "alternative_donor.755"; gene_name "CUFF.2104"; flanks "17448078-,17448817^"; structure "1^,2^"; splice_chain "17448078^,17448456^";
chr19	juncbase	alternative_donor	17448473	17448817	.	+	.	gene_id "alternative_donor.756"; transcript_id "alternative_donor.756"; gene_name "CUFF.2104"; flanks "17448473-,17448817^"; structure "1^,2^"; splice_chain "17448456^,17448473^";
chr19	juncbase	alternative_donor	17447966	17448817	.	+	.	gene_id "alternative_donor.757"; transcript_id "alternative_donor.757"; gene_name "CUFF.2104"; flanks "17447966-,17448817^"; structure "1^,2^"; splice_chain "17447966^,17448456^";
chr19	juncbase	jcn_only_AD	17445920	17448817	.	+	.	gene_id "jcn_only_AD.921"; transcript_id "jcn_only_AD.921"; gene_name "CUFF.2104"; flanks "17445920-,17448817^"; structure "1^,2^"; splice_chain "17445920^,17447843^";
chr19	juncbase	jcn_only_AD	17448385	17448817	.	+	.	gene_id "jcn_only_AD.922"; transcript_id "jcn_only_AD.922"; gene_name "CUFF.2104"; flanks "17448385-,17448817^"; structure "1^,2^"; splice_chain "17447843^,17448385^";
chr19	juncbase	jcn_only_AD	17448456	17448817	.	+	.	gene_id "jcn_only_AD.923"; transcript_id "jcn_only_AD.923"; gene_name "CUFF.2104"; flanks "17448456-,17448817^"; structure "1^,2^"; splice_chain "17447843^,17448456^";
chr19	juncbase	jcn_only_AD	17448078	17448817	.	+	.	gene_id "jcn_only_AD.924"; transcript_id "jcn_only_AD.924"; gene_name "CUFF.2104"; flanks "17448078-,17448817^"; structure "1^,2^"; splice_chain "17447843^,17448078^";
chr19	juncbase	jcn_only_AD	17448473	17448817	.	+	.	gene_id "jcn_only_AD.925"; transcript_id "jcn_only_AD.925"; gene_name "CUFF.2104"; flanks "17448473-,17448817^"; structure "1^,2^"; splice_chain "17447843^,17448473^";
chr19	juncbase	jcn_only_AD	17447966	17448817	.	+	.	gene_id "jcn_only_AD.926"; transcript_id "jcn_only_AD.926"; gene_name "CUFF.2104"; flanks "17447966-,17448817^"; structure "1^,2^"; splice_chain "17447843^,17447966^";
chr19	juncbase	alternative_acceptor	41533164	41533448	.	-	.	gene_id "alternative_acceptor.573"; transcript_id "alternative_acceptor.573"; gene_name "CUFF.2146"; flanks "41533164-,41533448^"; structure "1-,2-"; splice_chain "41533169-,41533164-";
chr19	juncbase	intron_retention	12917893	12918020	.	+	.	gene_id "intron_retention.684"; transcript_id "intron_retention.684"; gene_name ""; flanks "12917893-,12918020^"; structure "0,1^2-"; splice_chain ",12917893^12918020-";
chr19	juncbase	alternative_donor	39924134	39924058	.	-	.	gene_id "alternative_donor.758"; transcript_id "alternative_donor.758"; gene_name "CUFF.2139"; flanks "39924134-,39924058^"; structure "1^,2^"; splice_chain "39924162^,39924134^";
chr19	juncbase	alternative_donor	39924158	39924058	.	-	.	gene_id "alternative_donor.759"; transcript_id "alternative_donor.759"; gene_name "CUFF.2139"; flanks "39924158-,39924058^"; structure "1^,2^"; splice_chain "39924162^,39924158^";
chr19	juncbase	intron_retention	18119037	18119263	.	+	.	gene_id "intron_retention.685"; transcript_id "intron_retention.685"; gene_name ""; flanks "18119037-,18119263^"; structure "0,1^2-"; splice_chain ",18119037^18119263-";
chr19	juncbase	jcn_only_AA	6192040	6199491	.	-	.	gene_id "jcn_only_AA.756"; transcript_id "jcn_only_AA.756"; gene_name ""; flanks "6192040-,6199491^"; structure "1-,2-"; splice_chain "6192040-,6176454-";
chr19	juncbase	jcn_only_AA	6192064	6199491	.	-	.	gene_id "jcn_only_AA.757"; transcript_id "jcn_only_AA.757"; gene_name ""; flanks "6192064-,6199491^"; structure "1-,2-"; splice_chain "6192064-,6176454-";
chr19	juncbase	cassette	14877790	14876616	.	-	.	gene_id "cassette.459"; transcript_id "cassette.459"; gene_name "CUFF.2092"; flanks "14877790-,14876616^"; structure "0,1-2^"; splice_chain ",14877193-14877047^";
chr19	juncbase	alternative_acceptor	33904548	33953901	.	-	.	gene_id "alternative_acceptor.574"; transcript_id "alternative_acceptor.574"; gene_name "CUFF.2129"; flanks "33904548-,33953901^"; structure "1-,2-"; splice_chain "33904549-,33904548-";
chr19	juncbase	jcn_only_AA	6192040	6199491	.	-	.	gene_id "jcn_only_AA.758"; transcript_id "jcn_only_AA.758"; gene_name ""; flanks "6192040-,6199491^"; structure "1-,2-"; splice_chain "6192064-,6192040-";
chr19	juncbase	jcn_only_AA	6176454	6199491	.	-	.	gene_id "jcn_only_AA.759"; transcript_id "jcn_only_AA.759"; gene_name ""; flanks "6176454-,6199491^"; structure "1-,2-"; splice_chain "6192064-,6176454-";
chr19	juncbase	jcn_only_AA	11468415	11470283	.	+	.	gene_id "jcn_only_AA.760"; transcript_id "jcn_only_AA.760"; gene_name "CUFF.2072"; flanks "11468415-,11470283^"; structure "1-,2-"; splice_chain "11470147-,11470283-";
chr19	juncbase	jcn_only_AA	11468415	11470208	.	+	.	gene_id "jcn_only_AA.761"; transcript_id "jcn_only_AA.761"; gene_name "CUFF.2072"; flanks "11468415-,11470208^"; structure "1-,2-"; splice_chain "11470147-,11470208-";
chr19	juncbase	alternative_donor	2427457	2427322	.	-	.	gene_id "alternative_donor.760"; transcript_id "alternative_donor.760"; gene_name "CUFF.2047"; flanks "2427457-,2427322^"; structure "1^,2^"; splice_chain "2427457^,2427412^";
chr19	juncbase	intron_retention	58965711	58966550	.	+	.	gene_id "intron_retention.686"; transcript_id "intron_retention.686"; gene_name "CUFF.2196"; flanks "58965711-,58966550^"; structure "0,1^2-"; splice_chain ",58965711^58966550-";
chr19	juncbase	jcn_only_AA	17447966	17448817	.	+	.	gene_id "jcn_only_AA.762"; transcript_id "jcn_only_AA.762"; gene_name ""; flanks "17447966-,17448817^"; structure "1-,2-"; splice_chain "17448683-,17448817-";
chr19	juncbase	intron_retention	16191885	16192723	.	+	.	gene_id "intron_retention.687"; transcript_id "intron_retention.687"; gene_name "CUFF.2093"; flanks "16191885-,16192723^"; structure "0,1^2-"; splice_chain ",16191885^16192723-";
chr19	juncbase	alternative_donor	52901273	52901620	.	+	.	gene_id "alternative_donor.761"; transcript_id "alternative_donor.761"; gene_name "CUFF.2182"; flanks "52901273-,52901620^"; structure "1^,2^"; splice_chain "52901153^,52901273^";
chr19	juncbase	alternative_donor	52901157	52901620	.	+	.	gene_id "alternative_donor.762"; transcript_id "alternative_donor.762"; gene_name "CUFF.2182"; flanks "52901157-,52901620^"; structure "1^,2^"; splice_chain "52901153^,52901157^";
chr19	juncbase	cassette	16606562	16596068	.	-	.	gene_id "cassette.460"; transcript_id "cassette.460"; gene_name "CUFF.2099"; flanks "16606562-,16596068^"; structure "0,1-2^"; splice_chain ",16601381-16601178^";
chr19	juncbase	intron_retention	17449550	17449932	.	+	.	gene_id "intron_retention.688"; transcript_id "intron_retention.688"; gene_name ""; flanks "17449550-,17449932^"; structure "0,1^2-"; splice_chain ",17449550^17449932-";
chr19	juncbase	jcn_only_AD	32851524	32873373	.	+	.	gene_id "jcn_only_AD.927"; transcript_id "jcn_only_AD.927"; gene_name "CUFF.2117"; flanks "32851524-,32873373^"; structure "1^,2^"; splice_chain "32851524^,32871526^";
chr19	juncbase	intron_retention	52909896	52917457	.	+	.	gene_id "intron_retention.689"; transcript_id "intron_retention.689"; gene_name ""; flanks "52909896-,52917457^"; structure "0,1^2-"; splice_chain ",52909896^52917457-";
chr19	juncbase	jcn_only_AA	20287618	20349097	.	-	.	gene_id "jcn_only_AA.763"; transcript_id "jcn_only_AA.763"; gene_name "CUFF.2112"; flanks "20287618-,20349097^"; structure "1-,2-"; splice_chain "20339292-,20287618-";
chr19	juncbase	jcn_only_AA	20243396	20349097	.	-	.	gene_id "jcn_only_AA.764"; transcript_id "jcn_only_AA.764"; gene_name "CUFF.2112"; flanks "20243396-,20349097^"; structure "1-,2-"; splice_chain "20339292-,20243396-";
chr19	juncbase	intron_retention	10394170	10394234	.	+	.	gene_id "intron_retention.690"; transcript_id "intron_retention.690"; gene_name ""; flanks "10394170-,10394234^"; structure "0,1^2-"; splice_chain ",10394170^10394234-";
chr19	juncbase	intron_retention	17449550	17449763	.	+	.	gene_id "intron_retention.691"; transcript_id "intron_retention.691"; gene_name ""; flanks "17449550-,17449763^"; structure "0,1^2-"; splice_chain ",17449550^17449763-";
chr19	juncbase	intron_retention	14883154	14876616	.	-	.	gene_id "intron_retention.692"; transcript_id "intron_retention.692"; gene_name ""; flanks "14883154-,14876616^"; structure "0,1^2-"; splice_chain ",14883154^14876616-";
chr19	juncbase	intron_retention	50285227	50296293	.	+	.	gene_id "intron_retention.693"; transcript_id "intron_retention.693"; gene_name "CUFF.2167"; flanks "50285227-,50296293^"; structure "0,1^2-"; splice_chain ",50285227^50296293-";
chr19	juncbase	alternative_acceptor	49116564	49117965	.	-	.	gene_id "alternative_acceptor.575"; transcript_id "alternative_acceptor.575"; gene_name "CUFF.2164"; flanks "49116564-,49117965^"; structure "1-,2-"; splice_chain "49117884-,49116564-";
chr19	juncbase	jcn_only_AA	52264483	52271898	.	+	.	gene_id "jcn_only_AA.765"; transcript_id "jcn_only_AA.765"; gene_name "CUFF.2181"; flanks "52264483-,52271898^"; structure "1-,2-"; splice_chain "52266615-,52271898-";
chr19	juncbase	jcn_only_AA	52264483	52265670	.	+	.	gene_id "jcn_only_AA.766"; transcript_id "jcn_only_AA.766"; gene_name "CUFF.2181"; flanks "52264483-,52265670^"; structure "1-,2-"; splice_chain "52265670-,52266615-";
chr19	juncbase	jcn_only_AD	51535132	51534177	.	-	.	gene_id "jcn_only_AD.928"; transcript_id "jcn_only_AD.928"; gene_name "CUFF.2139,CUFF.2177"; flanks "51535132-,51534177^"; structure "1^,2^"; splice_chain "51535132^,51535036^";
chr19	juncbase	alternative_acceptor	11468415	11470283	.	+	.	gene_id "alternative_acceptor.576"; transcript_id "alternative_acceptor.576"; gene_name "CUFF.2072"; flanks "11468415-,11470283^"; structure "1-,2-"; splice_chain "11470147-,11470283-";
chr19	juncbase	alternative_acceptor	11468415	11470208	.	+	.	gene_id "alternative_acceptor.577"; transcript_id "alternative_acceptor.577"; gene_name "CUFF.2072"; flanks "11468415-,11470208^"; structure "1-,2-"; splice_chain "11470147-,11470208-";
chr19	juncbase	alternative_acceptor	51525920	51526348	.	-	.	gene_id "alternative_acceptor.578"; transcript_id "alternative_acceptor.578"; gene_name "CUFF.2175"; flanks "51525920-,51526348^"; structure "1-,2-"; splice_chain "51525953-,51525920-";
chr19	juncbase	jcn_only_AD	39924162	39924058	.	-	.	gene_id "jcn_only_AD.929"; transcript_id "jcn_only_AD.929"; gene_name "CUFF.2139"; flanks "39924162-,39924058^"; structure "1^,2^"; splice_chain "39924162^,39924158^";
chr19	juncbase	jcn_only_AD	39924134	39924058	.	-	.	gene_id "jcn_only_AD.930"; transcript_id "jcn_only_AD.930"; gene_name "CUFF.2139"; flanks "39924134-,39924058^"; structure "1^,2^"; splice_chain "39924158^,39924134^";
chr19	juncbase	cassette	56320135	56313105	.	-	.	gene_id "cassette.461"; transcript_id "cassette.461"; gene_name "CUFF.2191"; flanks "56320135-,56313105^"; structure "0,1-2^"; splice_chain ",56319380-56319219^";
chr19	juncbase	jcn_only_AA	44768528	44770351	.	+	.	gene_id "jcn_only_AA.767"; transcript_id "jcn_only_AA.767"; gene_name "CUFF.2186"; flanks "44768528-,44770351^"; structure "1-,2-"; splice_chain "44770308-,44770351-";
chr19	juncbase	intron_retention	45261730	45261981	.	+	.	gene_id "intron_retention.694"; transcript_id "intron_retention.694"; gene_name "CUFF.2157"; flanks "45261730-,45261981^"; structure "0,1^2-"; splice_chain ",45261730^45261981-";
chr19	juncbase	jcn_only_AA	14866656	14867050	.	-	.	gene_id "jcn_only_AA.768"; transcript_id "jcn_only_AA.768"; gene_name "CUFF.2092"; flanks "14866656-,14867050^"; structure "1-,2-"; splice_chain "14866689-,14866656-";
chr19	juncbase	intron_retention	21637185	21636579	.	-	.	gene_id "intron_retention.695"; transcript_id "intron_retention.695"; gene_name "CUFF.2114"; flanks "21637185-,21636579^"; structure "0,1^2-"; splice_chain ",21637185^21636579-";
chr19	juncbase	cassette	14867050	14862483	.	-	.	gene_id "cassette.462"; transcript_id "cassette.462"; gene_name "CUFF.2092"; flanks "14867050-,14862483^"; structure "0,1-2^"; splice_chain ",14863338-14863141^";
chr19	juncbase	intron_retention	1438891	1439967	.	+	.	gene_id "intron_retention.696"; transcript_id "intron_retention.696"; gene_name ""; flanks "1438891-,1439967^"; structure "0,1^2-"; splice_chain ",1438891^1439967-";
chr19	juncbase	alternative_donor	33968953	33954968	.	-	.	gene_id "alternative_donor.763"; transcript_id "alternative_donor.763"; gene_name "CUFF.2069,CUFF.2129"; flanks "33968953-,33954968^"; structure "1^,2^"; splice_chain "33968953^,33967986^";
chr19	juncbase	alternative_donor	33968952	33954968	.	-	.	gene_id "alternative_donor.764"; transcript_id "alternative_donor.764"; gene_name "CUFF.2069,CUFF.2129"; flanks "33968952-,33954968^"; structure "1^,2^"; splice_chain "33968952^,33967986^";
chr19	juncbase	intron_retention	50303274	50303354	.	+	.	gene_id "intron_retention.697"; transcript_id "intron_retention.697"; gene_name "CUFF.2167"; flanks "50303274-,50303354^"; structure "0,1^2-"; splice_chain ",50303274^50303354-";
chr19	juncbase	intron_retention	50305856	50306206	.	+	.	gene_id "intron_retention.698"; transcript_id "intron_retention.698"; gene_name "CUFF.2167"; flanks "50305856-,50306206^"; structure "0,1^2-"; splice_chain ",50305856^50306206-";
chr19	juncbase	intron_retention	50309510	50309938	.	+	.	gene_id "intron_retention.699"; transcript_id "intron_retention.699"; gene_name "CUFF.2167"; flanks "50309510-,50309938^"; structure "0,1^2-"; splice_chain ",50309510^50309938-";
chr19	juncbase	intron_retention	39926247	39924401	.	-	.	gene_id "intron_retention.700"; transcript_id "intron_retention.700"; gene_name "CUFF.2139"; flanks "39926247-,39924401^"; structure "0,1^2-"; splice_chain ",39926247^39924401-";
chr19	juncbase	alternative_donor	4323143	4323345	.	+	.	gene_id "alternative_donor.765"; transcript_id "alternative_donor.765"; gene_name "CUFF.2048"; flanks "4323143-,4323345^"; structure "1^,2^"; splice_chain "4323143^,4323210^";
chr19	juncbase	alternative_donor	4323234	4323345	.	+	.	gene_id "alternative_donor.766"; transcript_id "alternative_donor.766"; gene_name "CUFF.2048"; flanks "4323234-,4323345^"; structure "1^,2^"; splice_chain "4323210^,4323234^";
chr19	juncbase	jcn_only_AA	44764091	44768481	.	+	.	gene_id "jcn_only_AA.769"; transcript_id "jcn_only_AA.769"; gene_name ""; flanks "44764091-,44768481^"; structure "1-,2-"; splice_chain "44768467-,44768481-";
chr19	juncbase	jcn_only_AA	33984243	34003499	.	-	.	gene_id "jcn_only_AA.770"; transcript_id "jcn_only_AA.770"; gene_name ""; flanks "33984243-,34003499^"; structure "1-,2-"; splice_chain "34002061-,33984243-";
chr19	juncbase	alternative_donor	50285226	50296293	.	+	.	gene_id "alternative_donor.767"; transcript_id "alternative_donor.767"; gene_name "CUFF.2167"; flanks "50285226-,50296293^"; structure "1^,2^"; splice_chain "50285226^,50285227^";
chr19	juncbase	jcn_only_AD	17608273	17611087	.	+	.	gene_id "jcn_only_AD.931"; transcript_id "jcn_only_AD.931"; gene_name "CUFF.2103"; flanks "17608273-,17611087^"; structure "1^,2^"; splice_chain "17608273^,17610763^";
chr19	juncbase	intron_retention	4306209	4323021	.	+	.	gene_id "intron_retention.701"; transcript_id "intron_retention.701"; gene_name "CUFF.2048"; flanks "4306209-,4323021^"; structure "0,1^2-"; splice_chain ",4306209^4323021-";
chr19	juncbase	intron_retention	21639263	21637274	.	-	.	gene_id "intron_retention.702"; transcript_id "intron_retention.702"; gene_name "CUFF.2114"; flanks "21639263-,21637274^"; structure "0,1^2-"; splice_chain ",21639263^21637274-";
chr19	juncbase	intron_retention	51532598	51532468	.	-	.	gene_id "intron_retention.703"; transcript_id "intron_retention.703"; gene_name "CUFF.2177"; flanks "51532598-,51532468^"; structure "0,1^2-"; splice_chain ",51532598^51532468-";
chr19	juncbase	alternative_donor	51538062	51537896	.	-	.	gene_id "alternative_donor.768"; transcript_id "alternative_donor.768"; gene_name "CUFF.2177"; flanks "51538062-,51537896^"; structure "1^,2^"; splice_chain "51538062^,51538051^";
chr19	juncbase	alternative_acceptor	17448473	17448817	.	+	.	gene_id "alternative_acceptor.579"; transcript_id "alternative_acceptor.579"; gene_name "CUFF.2104"; flanks "17448473-,17448817^"; structure "1-,2-"; splice_chain "17448708-,17448817-";
chr19	juncbase	alternative_acceptor	17448473	17448683	.	+	.	gene_id "alternative_acceptor.580"; transcript_id "alternative_acceptor.580"; gene_name "CUFF.2104"; flanks "17448473-,17448683^"; structure "1-,2-"; splice_chain "17448683-,17448708-";
chr19	juncbase	intron_retention	12917893	12918021	.	+	.	gene_id "intron_retention.704"; transcript_id "intron_retention.704"; gene_name ""; flanks "12917893-,12918021^"; structure "0,1^2-"; splice_chain ",12917893^12918021-";
chr19	juncbase	intron_retention	18121167	18121381	.	+	.	gene_id "intron_retention.705"; transcript_id "intron_retention.705"; gene_name "CUFF.2106"; flanks "18121167-,18121381^"; structure "0,1^2-"; splice_chain ",18121167^18121381-";
chr19	juncbase	intron_retention	17448385	17448817	.	+	.	gene_id "intron_retention.706"; transcript_id "intron_retention.706"; gene_name ""; flanks "17448385-,17448817^"; structure "0,1^2-"; splice_chain ",17448385^17448817-";
chr19	juncbase	jcn_only_AD	41946386	41944319	.	-	.	gene_id "jcn_only_AD.932"; transcript_id "jcn_only_AD.932"; gene_name "CUFF.2148,CUFF.2175"; flanks "41946386-,41944319^"; structure "1^,2^"; splice_chain "41946386^,41945379^";
chr19	juncbase	jcn_only_AD	41945787	41944319	.	-	.	gene_id "jcn_only_AD.933"; transcript_id "jcn_only_AD.933"; gene_name "CUFF.2148,CUFF.2175"; flanks "41945787-,41944319^"; structure "1^,2^"; splice_chain "41945787^,41945379^";
chr19	juncbase	intron_retention	40486361	40486569	.	+	.	gene_id "intron_retention.707"; transcript_id "intron_retention.707"; gene_name "CUFF.2141"; flanks "40486361-,40486569^"; structure "0,1^2-"; splice_chain ",40486361^40486569-";
chr19	juncbase	cassette	6044204	6040252	.	-	.	gene_id "cassette.463"; transcript_id "cassette.463"; gene_name "CUFF.2051"; flanks "6044204-,6040252^"; structure "0,1-2^"; splice_chain ",6042134-6042055^";
chr19	juncbase	intron_retention	21639263	21638406	.	-	.	gene_id "intron_retention.708"; transcript_id "intron_retention.708"; gene_name "CUFF.2114"; flanks "21639263-,21638406^"; structure "0,1^2-"; splice_chain ",21639263^21638406-";
chr19	juncbase	jcn_only_AD	16187507	16192723	.	+	.	gene_id "jcn_only_AD.934"; transcript_id "jcn_only_AD.934"; gene_name "CUFF.2093"; flanks "16187507-,16192723^"; structure "1^,2^"; splice_chain "16187507^,16191885^";
chr19	juncbase	jcn_only_AD	16191252	16192723	.	+	.	gene_id "jcn_only_AD.935"; transcript_id "jcn_only_AD.935"; gene_name "CUFF.2093"; flanks "16191252-,16192723^"; structure "1^,2^"; splice_chain "16191252^,16191885^";
chr19	juncbase	jcn_only_AD	16186982	16192723	.	+	.	gene_id "jcn_only_AD.936"; transcript_id "jcn_only_AD.936"; gene_name "CUFF.2093"; flanks "16186982-,16192723^"; structure "1^,2^"; splice_chain "16186982^,16191885^";
chr19	juncbase	alternative_acceptor	4304758	4305982	.	+	.	gene_id "alternative_acceptor.581"; transcript_id "alternative_acceptor.581"; gene_name "CUFF.2048"; flanks "4304758-,4305982^"; structure "1-,2-"; splice_chain "4305982-,4306021-";
chr19	juncbase	alternative_acceptor	4304758	4305943	.	+	.	gene_id "alternative_acceptor.582"; transcript_id "alternative_acceptor.582"; gene_name "CUFF.2048"; flanks "4304758-,4305943^"; structure "1-,2-"; splice_chain "4305943-,4306021-";
chr19	juncbase	alternative_acceptor	17450408	17451916	.	+	.	gene_id "alternative_acceptor.583"; transcript_id "alternative_acceptor.583"; gene_name "CUFF.2104"; flanks "17450408-,17451916^"; structure "1-,2-"; splice_chain "17451853-,17451916-";
chr19	juncbase	alternative_acceptor	52264483	52271898	.	+	.	gene_id "alternative_acceptor.584"; transcript_id "alternative_acceptor.584"; gene_name "CUFF.2181"; flanks "52264483-,52271898^"; structure "1-,2-"; splice_chain "52266615-,52271898-";
chr19	juncbase	alternative_acceptor	52264483	52265670	.	+	.	gene_id "alternative_acceptor.585"; transcript_id "alternative_acceptor.585"; gene_name "CUFF.2181"; flanks "52264483-,52265670^"; structure "1-,2-"; splice_chain "52265670-,52266615-";
chr19	juncbase	alternative_acceptor	14847056	14854232	.	-	.	gene_id "alternative_acceptor.586"; transcript_id "alternative_acceptor.586"; gene_name "CUFF.2092"; flanks "14847056-,14854232^"; structure "1-,2-"; splice_chain "14852898-,14847056-";
chr19	juncbase	jcn_only_AD	45261670	45261981	.	+	.	gene_id "jcn_only_AD.937"; transcript_id "jcn_only_AD.937"; gene_name "CUFF.2157"; flanks "45261670-,45261981^"; structure "1^,2^"; splice_chain "45261670^,45261730^";
chr19	juncbase	alternative_donor	52901273	52901620	.	+	.	gene_id "alternative_donor.769"; transcript_id "alternative_donor.769"; gene_name "CUFF.2182"; flanks "52901273-,52901620^"; structure "1^,2^"; splice_chain "52901157^,52901273^";
chr19	juncbase	alternative_donor	52901153	52901620	.	+	.	gene_id "alternative_donor.770"; transcript_id "alternative_donor.770"; gene_name "CUFF.2182"; flanks "52901153-,52901620^"; structure "1^,2^"; splice_chain "52901153^,52901157^";
chr19	juncbase	alternative_donor	17608273	17611087	.	+	.	gene_id "alternative_donor.771"; transcript_id "alternative_donor.771"; gene_name "CUFF.2103"; flanks "17608273-,17611087^"; structure "1^,2^"; splice_chain "17608273^,17610763^";
chr19	juncbase	jcn_only_AD	33968953	33954968	.	-	.	gene_id "jcn_only_AD.938"; transcript_id "jcn_only_AD.938"; gene_name "CUFF.2069,CUFF.2129"; flanks "33968953-,33954968^"; structure "1^,2^"; splice_chain "33968953^,33967986^";
chr19	juncbase	jcn_only_AD	33968952	33954968	.	-	.	gene_id "jcn_only_AD.939"; transcript_id "jcn_only_AD.939"; gene_name "CUFF.2069,CUFF.2129"; flanks "33968952-,33954968^"; structure "1^,2^"; splice_chain "33968952^,33967986^";
chr19	juncbase	alternative_acceptor	12917893	12918021	.	+	.	gene_id "alternative_acceptor.587"; transcript_id "alternative_acceptor.587"; gene_name "CUFF.2104"; flanks "12917893-,12918021^"; structure "1-,2-"; splice_chain "12918020-,12918021-";
chr19	juncbase	jcn_only_AA	44771114	44777458	.	+	.	gene_id "jcn_only_AA.771"; transcript_id "jcn_only_AA.771"; gene_name "CUFF.2155"; flanks "44771114-,44777458^"; structure "1-,2-"; splice_chain "44777052-,44777458-";
chr19	juncbase	jcn_only_AA	44771114	44771533	.	+	.	gene_id "jcn_only_AA.772"; transcript_id "jcn_only_AA.772"; gene_name "CUFF.2155"; flanks "44771114-,44771533^"; structure "1-,2-"; splice_chain "44771533-,44777052-";
chr19	juncbase	alternative_donor	39924162	39924058	.	-	.	gene_id "alternative_donor.772"; transcript_id "alternative_donor.772"; gene_name "CUFF.2129,CUFF.2139"; flanks "39924162-,39924058^"; structure "1^,2^"; splice_chain "39924162^,39924134^";
chr19	juncbase	alternative_donor	39924158	39924058	.	-	.	gene_id "alternative_donor.773"; transcript_id "alternative_donor.773"; gene_name "CUFF.2129,CUFF.2139"; flanks "39924158-,39924058^"; structure "1^,2^"; splice_chain "39924158^,39924134^";
chr19	juncbase	cassette	11888552	11889145	.	+	.	gene_id "cassette.464"; transcript_id "cassette.464"; gene_name "CUFF.2077"; flanks "11888552-,11889145^"; structure "0,1-2^"; splice_chain ",11888931-11888994^";
chr19	juncbase	alternative_acceptor	44764091	44768481	.	+	.	gene_id "alternative_acceptor.588"; transcript_id "alternative_acceptor.588"; gene_name ""; flanks "44764091-,44768481^"; structure "1-,2-"; splice_chain "44768467-,44768481-";
chr19	juncbase	intron_retention	52909896	52918192	.	+	.	gene_id "intron_retention.709"; transcript_id "intron_retention.709"; gene_name ""; flanks "52909896-,52918192^"; structure "0,1^2-"; splice_chain ",52909896^52918192-";
chr19	juncbase	intron_retention	49299685	49299586	.	-	.	gene_id "intron_retention.710"; transcript_id "intron_retention.710"; gene_name "CUFF.2163"; flanks "49299685-,49299586^"; structure "0,1^2-"; splice_chain ",49299685^49299586-";
chr19	juncbase	jcn_only_AA	1438891	1440018	.	+	.	gene_id "jcn_only_AA.773"; transcript_id "jcn_only_AA.773"; gene_name "CUFF.2044"; flanks "1438891-,1440018^"; structure "1-,2-"; splice_chain "1439715-,1440018-";
chr19	juncbase	jcn_only_AA	1438891	1439605	.	+	.	gene_id "jcn_only_AA.774"; transcript_id "jcn_only_AA.774"; gene_name "CUFF.2044"; flanks "1438891-,1439605^"; structure "1-,2-"; splice_chain "1439605-,1439715-";
chr19	juncbase	jcn_only_AA	1438891	1439960	.	+	.	gene_id "jcn_only_AA.775"; transcript_id "jcn_only_AA.775"; gene_name "CUFF.2044"; flanks "1438891-,1439960^"; structure "1-,2-"; splice_chain "1439715-,1439960-";
chr19	juncbase	jcn_only_AA	1438891	1440025	.	+	.	gene_id "jcn_only_AA.776"; transcript_id "jcn_only_AA.776"; gene_name "CUFF.2044"; flanks "1438891-,1440025^"; structure "1-,2-"; splice_chain "1439715-,1440025-";
chr19	juncbase	jcn_only_AA	1438891	1439967	.	+	.	gene_id "jcn_only_AA.777"; transcript_id "jcn_only_AA.777"; gene_name "CUFF.2044"; flanks "1438891-,1439967^"; structure "1-,2-"; splice_chain "1439715-,1439967-";
chr19	juncbase	intron_retention	41944140	41942377	.	-	.	gene_id "intron_retention.711"; transcript_id "intron_retention.711"; gene_name ""; flanks "41944140-,41942377^"; structure "0,1^2-"; splice_chain ",41944140^41942377-";
chr19	juncbase	intron_retention	1440252	1440348	.	+	.	gene_id "intron_retention.712"; transcript_id "intron_retention.712"; gene_name "CUFF.2044"; flanks "1440252-,1440348^"; structure "0,1^2-"; splice_chain ",1440252^1440348-";
chr19	juncbase	jcn_only_AA	32851524	32873373	.	+	.	gene_id "jcn_only_AA.778"; transcript_id "jcn_only_AA.778"; gene_name "CUFF.2117,CUFF.2181"; flanks "32851524-,32873373^"; structure "1-,2-"; splice_chain "32871515-,32873373-";
chr19	juncbase	intron_retention	1439825	1440018	.	+	.	gene_id "intron_retention.713"; transcript_id "intron_retention.713"; gene_name ""; flanks "1439825-,1440018^"; structure "0,1^2-"; splice_chain ",1439825^1440018-";
chr19	juncbase	alternative_donor	33878796	33878387	.	-	.	gene_id "alternative_donor.774"; transcript_id "alternative_donor.774"; gene_name "CUFF.2129,CUFF.2177"; flanks "33878796-,33878387^"; structure "1^,2^"; splice_chain "33878796^,33878561^";
chr19	juncbase	intron_retention	51538062	51537896	.	-	.	gene_id "intron_retention.714"; transcript_id "intron_retention.714"; gene_name "CUFF.2177"; flanks "51538062-,51537896^"; structure "0,1^2-"; splice_chain ",51538062^51537896-";
chr19	juncbase	jcn_only_AA	44771114	44777052	.	+	.	gene_id "jcn_only_AA.779"; transcript_id "jcn_only_AA.779"; gene_name ""; flanks "44771114-,44777052^"; structure "1-,2-"; splice_chain "44777052-,44777458-";
chr19	juncbase	jcn_only_AA	44771114	44771533	.	+	.	gene_id "jcn_only_AA.780"; transcript_id "jcn_only_AA.780"; gene_name ""; flanks "44771114-,44771533^"; structure "1-,2-"; splice_chain "44771533-,44777458-";
chr19	juncbase	jcn_only_AD	17581516	17597372	.	+	.	gene_id "jcn_only_AD.940"; transcript_id "jcn_only_AD.940"; gene_name "CUFF.2103"; flanks "17581516-,17597372^"; structure "1^,2^"; splice_chain "17581516^,17594930^";
chr19	juncbase	intron_retention	44764155	44768467	.	+	.	gene_id "intron_retention.715"; transcript_id "intron_retention.715"; gene_name "CUFF.2155"; flanks "44764155-,44768467^"; structure "0,1^2-"; splice_chain ",44764155^44768467-";
chr19	juncbase	alternative_acceptor	33968995	33978156	.	-	.	gene_id "alternative_acceptor.589"; transcript_id "alternative_acceptor.589"; gene_name "CUFF.2129"; flanks "33968995-,33978156^"; structure "1-,2-"; splice_chain "33968996-,33968995-";
chr19	juncbase	jcn_only_AD	11474495	11474837	.	+	.	gene_id "jcn_only_AD.941"; transcript_id "jcn_only_AD.941"; gene_name "CUFF.2072"; flanks "11474495-,11474837^"; structure "1^,2^"; splice_chain "11474495^,11474511^";
chr19	juncbase	jcn_only_AD	52901273	52901620	.	+	.	gene_id "jcn_only_AD.942"; transcript_id "jcn_only_AD.942"; gene_name "CUFF.2182"; flanks "52901273-,52901620^"; structure "1^,2^"; splice_chain "52901157^,52901273^";
chr19	juncbase	jcn_only_AD	52901153	52901620	.	+	.	gene_id "jcn_only_AD.943"; transcript_id "jcn_only_AD.943"; gene_name "CUFF.2182"; flanks "52901153-,52901620^"; structure "1^,2^"; splice_chain "52901153^,52901157^";
chr19	juncbase	jcn_only_AD	33978156	33968996	.	-	.	gene_id "jcn_only_AD.944"; transcript_id "jcn_only_AD.944"; gene_name "CUFF.2129"; flanks "33978156-,33968996^"; structure "1^,2^"; splice_chain "33978156^,33977809^";
chr19	juncbase	jcn_only_AD	33980902	33968996	.	-	.	gene_id "jcn_only_AD.945"; transcript_id "jcn_only_AD.945"; gene_name "CUFF.2129"; flanks "33980902-,33968996^"; structure "1^,2^"; splice_chain "33980902^,33977809^";
chr18	juncbase	jcn_only_AA	67563281	67623991	.	-	.	gene_id "jcn_only_AA.781"; transcript_id "jcn_only_AA.781"; gene_name "CUFF.2032"; flanks "67563281-,67623991^"; structure "1-,2-"; splice_chain "67614768-,67563281-";
chr18	juncbase	jcn_only_AA	67614669	67623991	.	-	.	gene_id "jcn_only_AA.782"; transcript_id "jcn_only_AA.782"; gene_name "CUFF.2032"; flanks "67614669-,67623991^"; structure "1-,2-"; splice_chain "67614768-,67614669-";
chr18	juncbase	jcn_only_AD	55816801	55833020	.	+	.	gene_id "jcn_only_AD.946"; transcript_id "jcn_only_AD.946"; gene_name "CUFF.2003"; flanks "55816801-,55833020^"; structure "1^,2^"; splice_chain "55758859^,55816801^";
chr18	juncbase	jcn_only_AD	55713250	55833020	.	+	.	gene_id "jcn_only_AD.947"; transcript_id "jcn_only_AD.947"; gene_name "CUFF.2003"; flanks "55713250-,55833020^"; structure "1^,2^"; splice_chain "55713250^,55758859^";
chr18	juncbase	jcn_only_AD	55711940	55833020	.	+	.	gene_id "jcn_only_AD.948"; transcript_id "jcn_only_AD.948"; gene_name "CUFF.2003"; flanks "55711940-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55758859^";
chr18	juncbase	jcn_only_AD	55713020	55833020	.	+	.	gene_id "jcn_only_AD.949"; transcript_id "jcn_only_AD.949"; gene_name "CUFF.2003"; flanks "55713020-,55833020^"; structure "1^,2^"; splice_chain "55713020^,55758859^";
chr18	juncbase	jcn_only_AD	55712847	55833020	.	+	.	gene_id "jcn_only_AD.950"; transcript_id "jcn_only_AD.950"; gene_name "CUFF.2003"; flanks "55712847-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55758859^";
chr18	juncbase	jcn_only_AD	55714742	55833020	.	+	.	gene_id "jcn_only_AD.951"; transcript_id "jcn_only_AD.951"; gene_name "CUFF.2003"; flanks "55714742-,55833020^"; structure "1^,2^"; splice_chain "55714742^,55758859^";
chr18	juncbase	jcn_only_AD	55816791	55833020	.	+	.	gene_id "jcn_only_AD.952"; transcript_id "jcn_only_AD.952"; gene_name "CUFF.2003"; flanks "55816791-,55833020^"; structure "1^,2^"; splice_chain "55758859^,55816791^";
chr18	juncbase	jcn_only_AD	55722108	55833020	.	+	.	gene_id "jcn_only_AD.953"; transcript_id "jcn_only_AD.953"; gene_name "CUFF.2003"; flanks "55722108-,55833020^"; structure "1^,2^"; splice_chain "55722108^,55758859^";
chr18	juncbase	alternative_donor	12658204	12658573	.	+	.	gene_id "alternative_donor.775"; transcript_id "alternative_donor.775"; gene_name "CUFF.1989"; flanks "12658204-,12658573^"; structure "1^,2^"; splice_chain "12658204^,12658342^";
chr18	juncbase	cassette	180339	196637	.	+	.	gene_id "cassette.465"; transcript_id "cassette.465"; gene_name "CUFF.1980"; flanks "180339-,196637^"; structure "0,1-2^"; splice_chain ",192842-192900^";
chr18	juncbase	alternative_donor	55816801	55833020	.	+	.	gene_id "alternative_donor.776"; transcript_id "alternative_donor.776"; gene_name "CUFF.2003"; flanks "55816801-,55833020^"; structure "1^,2^"; splice_chain "55713020^,55816801^";
chr18	juncbase	alternative_donor	55713250	55833020	.	+	.	gene_id "alternative_donor.777"; transcript_id "alternative_donor.777"; gene_name "CUFF.2003"; flanks "55713250-,55833020^"; structure "1^,2^"; splice_chain "55713020^,55713250^";
chr18	juncbase	alternative_donor	55711940	55833020	.	+	.	gene_id "alternative_donor.778"; transcript_id "alternative_donor.778"; gene_name "CUFF.2003"; flanks "55711940-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55713020^";
chr18	juncbase	alternative_donor	55758859	55833020	.	+	.	gene_id "alternative_donor.779"; transcript_id "alternative_donor.779"; gene_name "CUFF.2003"; flanks "55758859-,55833020^"; structure "1^,2^"; splice_chain "55713020^,55758859^";
chr18	juncbase	alternative_donor	55712847	55833020	.	+	.	gene_id "alternative_donor.780"; transcript_id "alternative_donor.780"; gene_name "CUFF.2003"; flanks "55712847-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55713020^";
chr18	juncbase	alternative_donor	55714742	55833020	.	+	.	gene_id "alternative_donor.781"; transcript_id "alternative_donor.781"; gene_name "CUFF.2003"; flanks "55714742-,55833020^"; structure "1^,2^"; splice_chain "55713020^,55714742^";
chr18	juncbase	alternative_donor	55816791	55833020	.	+	.	gene_id "alternative_donor.782"; transcript_id "alternative_donor.782"; gene_name "CUFF.2003"; flanks "55816791-,55833020^"; structure "1^,2^"; splice_chain "55713020^,55816791^";
chr18	juncbase	alternative_donor	55722108	55833020	.	+	.	gene_id "alternative_donor.783"; transcript_id "alternative_donor.783"; gene_name "CUFF.2003"; flanks "55722108-,55833020^"; structure "1^,2^"; splice_chain "55713020^,55722108^";
chr18	juncbase	jcn_only_AD	61377595	61390229	.	+	.	gene_id "jcn_only_AD.954"; transcript_id "jcn_only_AD.954"; gene_name "CUFF.2021"; flanks "61377595-,61390229^"; structure "1^,2^"; splice_chain "61377595^,61388220^";
chr18	juncbase	alternative_donor	77875467	77890986	.	+	.	gene_id "alternative_donor.784"; transcript_id "alternative_donor.784"; gene_name "CUFF.2041"; flanks "77875467-,77890986^"; structure "1^,2^"; splice_chain "77875467^,77875533^";
chr18	juncbase	jcn_only_AD	55816801	55833020	.	+	.	gene_id "jcn_only_AD.955"; transcript_id "jcn_only_AD.955"; gene_name "CUFF.2003"; flanks "55816801-,55833020^"; structure "1^,2^"; splice_chain "55714742^,55816801^";
chr18	juncbase	jcn_only_AD	55713250	55833020	.	+	.	gene_id "jcn_only_AD.956"; transcript_id "jcn_only_AD.956"; gene_name "CUFF.2003"; flanks "55713250-,55833020^"; structure "1^,2^"; splice_chain "55713250^,55714742^";
chr18	juncbase	jcn_only_AD	55711940	55833020	.	+	.	gene_id "jcn_only_AD.957"; transcript_id "jcn_only_AD.957"; gene_name "CUFF.2003"; flanks "55711940-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55714742^";
chr18	juncbase	jcn_only_AD	55758859	55833020	.	+	.	gene_id "jcn_only_AD.958"; transcript_id "jcn_only_AD.958"; gene_name "CUFF.2003"; flanks "55758859-,55833020^"; structure "1^,2^"; splice_chain "55714742^,55758859^";
chr18	juncbase	jcn_only_AD	55713020	55833020	.	+	.	gene_id "jcn_only_AD.959"; transcript_id "jcn_only_AD.959"; gene_name "CUFF.2003"; flanks "55713020-,55833020^"; structure "1^,2^"; splice_chain "55713020^,55714742^";
chr18	juncbase	jcn_only_AD	55712847	55833020	.	+	.	gene_id "jcn_only_AD.960"; transcript_id "jcn_only_AD.960"; gene_name "CUFF.2003"; flanks "55712847-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55714742^";
chr18	juncbase	jcn_only_AD	55816791	55833020	.	+	.	gene_id "jcn_only_AD.961"; transcript_id "jcn_only_AD.961"; gene_name "CUFF.2003"; flanks "55816791-,55833020^"; structure "1^,2^"; splice_chain "55714742^,55816791^";
chr18	juncbase	jcn_only_AD	55722108	55833020	.	+	.	gene_id "jcn_only_AD.962"; transcript_id "jcn_only_AD.962"; gene_name "CUFF.2003"; flanks "55722108-,55833020^"; structure "1^,2^"; splice_chain "55714742^,55722108^";
chr18	juncbase	alternative_donor	47340102	47329223	.	-	.	gene_id "alternative_donor.785"; transcript_id "alternative_donor.785"; gene_name "CUFF.2002"; flanks "47340102-,47329223^"; structure "1^,2^"; splice_chain "47340102^,47339839^";
chr18	juncbase	jcn_only_AA	67509631	67562937	.	-	.	gene_id "jcn_only_AA.783"; transcript_id "jcn_only_AA.783"; gene_name "CUFF.2032"; flanks "67509631-,67562937^"; structure "1-,2-"; splice_chain "67540482-,67509631-";
chr18	juncbase	intron_retention	210031	210386	.	+	.	gene_id "intron_retention.716"; transcript_id "intron_retention.716"; gene_name "CUFF.1980"; flanks "210031-,210386^"; structure "0,1^2-"; splice_chain ",210031^210386-";
chr18	juncbase	jcn_only_AA	55711940	56057878	.	+	.	gene_id "jcn_only_AA.784"; transcript_id "jcn_only_AA.784"; gene_name "CUFF.1989"; flanks "55711940-,56057878^"; structure "1-,2-"; splice_chain "55833020-,56057878-";
chr18	juncbase	jcn_only_AA	12014372	12021701	.	+	.	gene_id "jcn_only_AA.785"; transcript_id "jcn_only_AA.785"; gene_name "CUFF.1986"; flanks "12014372-,12021701^"; structure "1-,2-"; splice_chain "12017613-,12021701-";
chr18	juncbase	jcn_only_AA	12014372	12028042	.	+	.	gene_id "jcn_only_AA.786"; transcript_id "jcn_only_AA.786"; gene_name "CUFF.1986"; flanks "12014372-,12028042^"; structure "1-,2-"; splice_chain "12017613-,12028042-";
chr18	juncbase	cassette	163453	180236	.	+	.	gene_id "cassette.466"; transcript_id "cassette.466"; gene_name "CUFF.1980"; flanks "163453-,180236^"; structure "0,1-2^"; splice_chain ",166787-166819^";
chr18	juncbase	alternative_donor	55816801	55833020	.	+	.	gene_id "alternative_donor.786"; transcript_id "alternative_donor.786"; gene_name "CUFF.2003"; flanks "55816801-,55833020^"; structure "1^,2^"; splice_chain "55758859^,55816801^";
chr18	juncbase	alternative_donor	55713250	55833020	.	+	.	gene_id "alternative_donor.787"; transcript_id "alternative_donor.787"; gene_name "CUFF.2003"; flanks "55713250-,55833020^"; structure "1^,2^"; splice_chain "55713250^,55758859^";
chr18	juncbase	alternative_donor	55711940	55833020	.	+	.	gene_id "alternative_donor.788"; transcript_id "alternative_donor.788"; gene_name "CUFF.2003"; flanks "55711940-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55758859^";
chr18	juncbase	alternative_donor	55713020	55833020	.	+	.	gene_id "alternative_donor.789"; transcript_id "alternative_donor.789"; gene_name "CUFF.2003"; flanks "55713020-,55833020^"; structure "1^,2^"; splice_chain "55713020^,55758859^";
chr18	juncbase	alternative_donor	55712847	55833020	.	+	.	gene_id "alternative_donor.790"; transcript_id "alternative_donor.790"; gene_name "CUFF.2003"; flanks "55712847-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55758859^";
chr18	juncbase	alternative_donor	55714742	55833020	.	+	.	gene_id "alternative_donor.791"; transcript_id "alternative_donor.791"; gene_name "CUFF.2003"; flanks "55714742-,55833020^"; structure "1^,2^"; splice_chain "55714742^,55758859^";
chr18	juncbase	alternative_donor	55816791	55833020	.	+	.	gene_id "alternative_donor.792"; transcript_id "alternative_donor.792"; gene_name "CUFF.2003"; flanks "55816791-,55833020^"; structure "1^,2^"; splice_chain "55758859^,55816791^";
chr18	juncbase	alternative_donor	55722108	55833020	.	+	.	gene_id "alternative_donor.793"; transcript_id "alternative_donor.793"; gene_name "CUFF.2003"; flanks "55722108-,55833020^"; structure "1^,2^"; splice_chain "55722108^,55758859^";
chr18	juncbase	jcn_only_AA	14808578	14822604	.	+	.	gene_id "jcn_only_AA.787"; transcript_id "jcn_only_AA.787"; gene_name ""; flanks "14808578-,14822604^"; structure "1-,2-"; splice_chain "14808671-,14822604-";
chr18	juncbase	alternative_donor	55816801	55833020	.	+	.	gene_id "alternative_donor.794"; transcript_id "alternative_donor.794"; gene_name "CUFF.2003"; flanks "55816801-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55816801^";
chr18	juncbase	alternative_donor	55713250	55833020	.	+	.	gene_id "alternative_donor.795"; transcript_id "alternative_donor.795"; gene_name "CUFF.2003"; flanks "55713250-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55713250^";
chr18	juncbase	alternative_donor	55711940	55833020	.	+	.	gene_id "alternative_donor.796"; transcript_id "alternative_donor.796"; gene_name "CUFF.2003"; flanks "55711940-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55712847^";
chr18	juncbase	alternative_donor	55758859	55833020	.	+	.	gene_id "alternative_donor.797"; transcript_id "alternative_donor.797"; gene_name "CUFF.2003"; flanks "55758859-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55758859^";
chr18	juncbase	alternative_donor	55713020	55833020	.	+	.	gene_id "alternative_donor.798"; transcript_id "alternative_donor.798"; gene_name "CUFF.2003"; flanks "55713020-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55713020^";
chr18	juncbase	alternative_donor	55714742	55833020	.	+	.	gene_id "alternative_donor.799"; transcript_id "alternative_donor.799"; gene_name "CUFF.2003"; flanks "55714742-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55714742^";
chr18	juncbase	alternative_donor	55816791	55833020	.	+	.	gene_id "alternative_donor.800"; transcript_id "alternative_donor.800"; gene_name "CUFF.2003"; flanks "55816791-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55816791^";
chr18	juncbase	alternative_donor	55722108	55833020	.	+	.	gene_id "alternative_donor.801"; transcript_id "alternative_donor.801"; gene_name "CUFF.2003"; flanks "55722108-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55722108^";
chr18	juncbase	jcn_only_AA	63430288	63476940	.	+	.	gene_id "jcn_only_AA.788"; transcript_id "jcn_only_AA.788"; gene_name "CUFF.2027"; flanks "63430288-,63476940^"; structure "1-,2-"; splice_chain "63470351-,63476940-";
chr18	juncbase	jcn_only_AA	67614006	67614597	.	-	.	gene_id "jcn_only_AA.789"; transcript_id "jcn_only_AA.789"; gene_name "CUFF.2032"; flanks "67614006-,67614597^"; structure "1-,2-"; splice_chain "67614305-,67614006-";
chr18	juncbase	jcn_only_AD	77891075	77893495	.	+	.	gene_id "jcn_only_AD.963"; transcript_id "jcn_only_AD.963"; gene_name "CUFF.2041"; flanks "77891075-,77893495^"; structure "1^,2^"; splice_chain "77891075^,77891689^";
chr18	juncbase	jcn_only_AD	12658204	12658573	.	+	.	gene_id "jcn_only_AD.964"; transcript_id "jcn_only_AD.964"; gene_name "CUFF.1989"; flanks "12658204-,12658573^"; structure "1^,2^"; splice_chain "12658204^,12658342^";
chr18	juncbase	alternative_donor	55816801	55833020	.	+	.	gene_id "alternative_donor.802"; transcript_id "alternative_donor.802"; gene_name "CUFF.2003"; flanks "55816801-,55833020^"; structure "1^,2^"; splice_chain "55713250^,55816801^";
chr18	juncbase	alternative_donor	55711940	55833020	.	+	.	gene_id "alternative_donor.803"; transcript_id "alternative_donor.803"; gene_name "CUFF.2003"; flanks "55711940-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55713250^";
chr18	juncbase	alternative_donor	55758859	55833020	.	+	.	gene_id "alternative_donor.804"; transcript_id "alternative_donor.804"; gene_name "CUFF.2003"; flanks "55758859-,55833020^"; structure "1^,2^"; splice_chain "55713250^,55758859^";
chr18	juncbase	alternative_donor	55713020	55833020	.	+	.	gene_id "alternative_donor.805"; transcript_id "alternative_donor.805"; gene_name "CUFF.2003"; flanks "55713020-,55833020^"; structure "1^,2^"; splice_chain "55713020^,55713250^";
chr18	juncbase	alternative_donor	55712847	55833020	.	+	.	gene_id "alternative_donor.806"; transcript_id "alternative_donor.806"; gene_name "CUFF.2003"; flanks "55712847-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55713250^";
chr18	juncbase	alternative_donor	55714742	55833020	.	+	.	gene_id "alternative_donor.807"; transcript_id "alternative_donor.807"; gene_name "CUFF.2003"; flanks "55714742-,55833020^"; structure "1^,2^"; splice_chain "55713250^,55714742^";
chr18	juncbase	alternative_donor	55816791	55833020	.	+	.	gene_id "alternative_donor.808"; transcript_id "alternative_donor.808"; gene_name "CUFF.2003"; flanks "55816791-,55833020^"; structure "1^,2^"; splice_chain "55713250^,55816791^";
chr18	juncbase	alternative_donor	55722108	55833020	.	+	.	gene_id "alternative_donor.809"; transcript_id "alternative_donor.809"; gene_name "CUFF.2003"; flanks "55722108-,55833020^"; structure "1^,2^"; splice_chain "55713250^,55722108^";
chr18	juncbase	intron_retention	44272132	44268882	.	-	.	gene_id "intron_retention.717"; transcript_id "intron_retention.717"; gene_name "CUFF.1997"; flanks "44272132-,44268882^"; structure "0,1^2-"; splice_chain ",44272132^44268882-";
chr18	juncbase	jcn_only_AA	11999186	12009882	.	+	.	gene_id "jcn_only_AA.790"; transcript_id "jcn_only_AA.790"; gene_name "CUFF.1986"; flanks "11999186-,12009882^"; structure "1-,2-"; splice_chain "12008332-,12009882-";
chr18	juncbase	jcn_only_AA	77441517	77455225	.	+	.	gene_id "jcn_only_AA.791"; transcript_id "jcn_only_AA.791"; gene_name ""; flanks "77441517-,77455225^"; structure "1-,2-"; splice_chain "77443043-,77455225-";
chr18	juncbase	alternative_acceptor	55713020	55833024	.	+	.	gene_id "alternative_acceptor.590"; transcript_id "alternative_acceptor.590"; gene_name ""; flanks "55713020-,55833024^"; structure "1-,2-"; splice_chain "55833020-,55833024-";
chr18	juncbase	intron_retention	12028150	12028841	.	+	.	gene_id "intron_retention.718"; transcript_id "intron_retention.718"; gene_name "CUFF.1986"; flanks "12028150-,12028841^"; structure "0,1^2-"; splice_chain ",12028150^12028841-";
chr18	juncbase	intron_retention	61826222	61826330	.	+	.	gene_id "intron_retention.719"; transcript_id "intron_retention.719"; gene_name "CUFF.2025"; flanks "61826222-,61826330^"; structure "0,1^2-"; splice_chain ",61826222^61826330-";
chr18	juncbase	cassette	57115215	57106810	.	-	.	gene_id "cassette.467"; transcript_id "cassette.467"; gene_name "CUFF.2007"; flanks "57115215-,57106810^"; structure "0,1-2^"; splice_chain ",57107048-57106909^";
chr18	juncbase	jcn_only_AD	72920375	72914295	.	-	.	gene_id "jcn_only_AD.965"; transcript_id "jcn_only_AD.965"; gene_name "CUFF.2035"; flanks "72920375-,72914295^"; structure "1^,2^"; splice_chain "72920375^,72917148^";
chr18	juncbase	jcn_only_AD	72920316	72914295	.	-	.	gene_id "jcn_only_AD.966"; transcript_id "jcn_only_AD.966"; gene_name "CUFF.2035"; flanks "72920316-,72914295^"; structure "1^,2^"; splice_chain "72920316^,72917148^";
chr18	juncbase	alternative_acceptor	12014372	12021701	.	+	.	gene_id "alternative_acceptor.591"; transcript_id "alternative_acceptor.591"; gene_name ""; flanks "12014372-,12021701^"; structure "1-,2-"; splice_chain "12021701-,12028042-";
chr18	juncbase	alternative_acceptor	12014372	12017613	.	+	.	gene_id "alternative_acceptor.592"; transcript_id "alternative_acceptor.592"; gene_name ""; flanks "12014372-,12017613^"; structure "1-,2-"; splice_chain "12017613-,12028042-";
chr18	juncbase	alternative_donor	76738786	76737429	.	-	.	gene_id "alternative_donor.810"; transcript_id "alternative_donor.810"; gene_name "CUFF.2039"; flanks "76738786-,76737429^"; structure "1^,2^"; splice_chain "76738786^,76737555^";
chr18	juncbase	alternative_donor	76738463	76737429	.	-	.	gene_id "alternative_donor.811"; transcript_id "alternative_donor.811"; gene_name "CUFF.2039"; flanks "76738463-,76737429^"; structure "1^,2^"; splice_chain "76738463^,76737555^";
chr18	juncbase	jcn_only_AD	56033460	56034978	.	+	.	gene_id "jcn_only_AD.967"; transcript_id "jcn_only_AD.967"; gene_name "CUFF.2003"; flanks "56033460-,56034978^"; structure "1^,2^"; splice_chain "56033460^,56034458^";
chr18	juncbase	jcn_only_AA	12658342	12658573	.	+	.	gene_id "jcn_only_AA.792"; transcript_id "jcn_only_AA.792"; gene_name "CUFF.1989"; flanks "12658342-,12658573^"; structure "1-,2-"; splice_chain "12658550-,12658573-";
chr18	juncbase	alternative_donor	56001124	56008270	.	+	.	gene_id "alternative_donor.812"; transcript_id "alternative_donor.812"; gene_name "CUFF.2003"; flanks "56001124-,56008270^"; structure "1^,2^"; splice_chain "56001124^,56002769^";
chr18	juncbase	alternative_acceptor	12014372	12017613	.	+	.	gene_id "alternative_acceptor.593"; transcript_id "alternative_acceptor.593"; gene_name "CUFF.1986"; flanks "12014372-,12017613^"; structure "1-,2-"; splice_chain "12017613-,12021701-";
chr18	juncbase	alternative_acceptor	12014372	12028042	.	+	.	gene_id "alternative_acceptor.594"; transcript_id "alternative_acceptor.594"; gene_name "CUFF.1986"; flanks "12014372-,12028042^"; structure "1-,2-"; splice_chain "12021701-,12028042-";
chr18	juncbase	cassette	55862965	55912659	.	+	.	gene_id "cassette.468"; transcript_id "cassette.468"; gene_name "CUFF.2003"; flanks "55862965-,55912659^"; structure "0,1-2^"; splice_chain ",55895062-55895139^";
chr18	juncbase	cassette	55888989	55912659	.	+	.	gene_id "cassette.469"; transcript_id "cassette.469"; gene_name "CUFF.2003"; flanks "55888989-,55912659^"; structure "0,1-2^"; splice_chain ",55895062-55895139^";
chr18	juncbase	cassette	55833093	55912659	.	+	.	gene_id "cassette.470"; transcript_id "cassette.470"; gene_name "CUFF.2003"; flanks "55833093-,55912659^"; structure "0,1-2^"; splice_chain ",55895062-55895139^";
chr18	juncbase	jcn_only_AD	76738786	76737429	.	-	.	gene_id "jcn_only_AD.968"; transcript_id "jcn_only_AD.968"; gene_name ""; flanks "76738786-,76737429^"; structure "1^,2^"; splice_chain "76738786^,76738463^";
chr18	juncbase	jcn_only_AD	76737555	76737429	.	-	.	gene_id "jcn_only_AD.969"; transcript_id "jcn_only_AD.969"; gene_name ""; flanks "76737555-,76737429^"; structure "1^,2^"; splice_chain "76738463^,76737555^";
chr18	juncbase	jcn_only_AD	47340102	47329223	.	-	.	gene_id "jcn_only_AD.970"; transcript_id "jcn_only_AD.970"; gene_name "CUFF.2002"; flanks "47340102-,47329223^"; structure "1^,2^"; splice_chain "47340102^,47339839^";
chr18	juncbase	jcn_only_AA	12014372	12021701	.	+	.	gene_id "jcn_only_AA.793"; transcript_id "jcn_only_AA.793"; gene_name ""; flanks "12014372-,12021701^"; structure "1-,2-"; splice_chain "12021701-,12028042-";
chr18	juncbase	jcn_only_AA	12014372	12017613	.	+	.	gene_id "jcn_only_AA.794"; transcript_id "jcn_only_AA.794"; gene_name ""; flanks "12014372-,12017613^"; structure "1-,2-"; splice_chain "12017613-,12028042-";
chr18	juncbase	jcn_only_AD	12012214	12014264	.	+	.	gene_id "jcn_only_AD.971"; transcript_id "jcn_only_AD.971"; gene_name "CUFF.1986"; flanks "12012214-,12014264^"; structure "1^,2^"; splice_chain "12012214^,12012348^";
chr18	juncbase	intron_retention	44272132	44268830	.	-	.	gene_id "intron_retention.720"; transcript_id "intron_retention.720"; gene_name ""; flanks "44272132-,44268830^"; structure "0,1^2-"; splice_chain ",44272132^44268830-";
chr18	juncbase	cassette	77478016	77496355	.	+	.	gene_id "cassette.471"; transcript_id "cassette.471"; gene_name "CUFF.2040"; flanks "77478016-,77496355^"; structure "0,1-2^"; splice_chain ",77488907-77489069^";
chr18	juncbase	alternative_acceptor	61060782	61064267	.	-	.	gene_id "alternative_acceptor.595"; transcript_id "alternative_acceptor.595"; gene_name "CUFF.2018"; flanks "61060782-,61064267^"; structure "1-,2-"; splice_chain "61060799-,61060782-";
chr18	juncbase	jcn_only_AD	55816801	55833020	.	+	.	gene_id "jcn_only_AD.972"; transcript_id "jcn_only_AD.972"; gene_name "CUFF.2003"; flanks "55816801-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55816801^";
chr18	juncbase	jcn_only_AD	55713250	55833020	.	+	.	gene_id "jcn_only_AD.973"; transcript_id "jcn_only_AD.973"; gene_name "CUFF.2003"; flanks "55713250-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55713250^";
chr18	juncbase	jcn_only_AD	55711940	55833020	.	+	.	gene_id "jcn_only_AD.974"; transcript_id "jcn_only_AD.974"; gene_name "CUFF.2003"; flanks "55711940-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55712847^";
chr18	juncbase	jcn_only_AD	55758859	55833020	.	+	.	gene_id "jcn_only_AD.975"; transcript_id "jcn_only_AD.975"; gene_name "CUFF.2003"; flanks "55758859-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55758859^";
chr18	juncbase	jcn_only_AD	55713020	55833020	.	+	.	gene_id "jcn_only_AD.976"; transcript_id "jcn_only_AD.976"; gene_name "CUFF.2003"; flanks "55713020-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55713020^";
chr18	juncbase	jcn_only_AD	55714742	55833020	.	+	.	gene_id "jcn_only_AD.977"; transcript_id "jcn_only_AD.977"; gene_name "CUFF.2003"; flanks "55714742-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55714742^";
chr18	juncbase	jcn_only_AD	55816791	55833020	.	+	.	gene_id "jcn_only_AD.978"; transcript_id "jcn_only_AD.978"; gene_name "CUFF.2003"; flanks "55816791-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55816791^";
chr18	juncbase	jcn_only_AD	55722108	55833020	.	+	.	gene_id "jcn_only_AD.979"; transcript_id "jcn_only_AD.979"; gene_name "CUFF.2003"; flanks "55722108-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55722108^";
chr18	juncbase	jcn_only_AD	55816801	55833020	.	+	.	gene_id "jcn_only_AD.980"; transcript_id "jcn_only_AD.980"; gene_name "CUFF.2003"; flanks "55816801-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55816801^";
chr18	juncbase	jcn_only_AD	55713250	55833020	.	+	.	gene_id "jcn_only_AD.981"; transcript_id "jcn_only_AD.981"; gene_name "CUFF.2003"; flanks "55713250-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55713250^";
chr18	juncbase	jcn_only_AD	55758859	55833020	.	+	.	gene_id "jcn_only_AD.982"; transcript_id "jcn_only_AD.982"; gene_name "CUFF.2003"; flanks "55758859-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55758859^";
chr18	juncbase	jcn_only_AD	55713020	55833020	.	+	.	gene_id "jcn_only_AD.983"; transcript_id "jcn_only_AD.983"; gene_name "CUFF.2003"; flanks "55713020-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55713020^";
chr18	juncbase	jcn_only_AD	55712847	55833020	.	+	.	gene_id "jcn_only_AD.984"; transcript_id "jcn_only_AD.984"; gene_name "CUFF.2003"; flanks "55712847-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55712847^";
chr18	juncbase	jcn_only_AD	55714742	55833020	.	+	.	gene_id "jcn_only_AD.985"; transcript_id "jcn_only_AD.985"; gene_name "CUFF.2003"; flanks "55714742-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55714742^";
chr18	juncbase	jcn_only_AD	55816791	55833020	.	+	.	gene_id "jcn_only_AD.986"; transcript_id "jcn_only_AD.986"; gene_name "CUFF.2003"; flanks "55816791-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55816791^";
chr18	juncbase	jcn_only_AD	55722108	55833020	.	+	.	gene_id "jcn_only_AD.987"; transcript_id "jcn_only_AD.987"; gene_name "CUFF.2003"; flanks "55722108-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55722108^";
chr18	juncbase	alternative_donor	55713250	55833020	.	+	.	gene_id "alternative_donor.813"; transcript_id "alternative_donor.813"; gene_name "CUFF.2003"; flanks "55713250-,55833020^"; structure "1^,2^"; splice_chain "55713250^,55816801^";
chr18	juncbase	alternative_donor	55711940	55833020	.	+	.	gene_id "alternative_donor.814"; transcript_id "alternative_donor.814"; gene_name "CUFF.2003"; flanks "55711940-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55816801^";
chr18	juncbase	alternative_donor	55758859	55833020	.	+	.	gene_id "alternative_donor.815"; transcript_id "alternative_donor.815"; gene_name "CUFF.2003"; flanks "55758859-,55833020^"; structure "1^,2^"; splice_chain "55758859^,55816801^";
chr18	juncbase	alternative_donor	55713020	55833020	.	+	.	gene_id "alternative_donor.816"; transcript_id "alternative_donor.816"; gene_name "CUFF.2003"; flanks "55713020-,55833020^"; structure "1^,2^"; splice_chain "55713020^,55816801^";
chr18	juncbase	alternative_donor	55712847	55833020	.	+	.	gene_id "alternative_donor.817"; transcript_id "alternative_donor.817"; gene_name "CUFF.2003"; flanks "55712847-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55816801^";
chr18	juncbase	alternative_donor	55714742	55833020	.	+	.	gene_id "alternative_donor.818"; transcript_id "alternative_donor.818"; gene_name "CUFF.2003"; flanks "55714742-,55833020^"; structure "1^,2^"; splice_chain "55714742^,55816801^";
chr18	juncbase	alternative_donor	55816791	55833020	.	+	.	gene_id "alternative_donor.819"; transcript_id "alternative_donor.819"; gene_name "CUFF.2003"; flanks "55816791-,55833020^"; structure "1^,2^"; splice_chain "55816791^,55816801^";
chr18	juncbase	alternative_donor	55722108	55833020	.	+	.	gene_id "alternative_donor.820"; transcript_id "alternative_donor.820"; gene_name "CUFF.2003"; flanks "55722108-,55833020^"; structure "1^,2^"; splice_chain "55722108^,55816801^";
chr18	juncbase	cassette	12009986	12014264	.	+	.	gene_id "cassette.472"; transcript_id "cassette.472"; gene_name "CUFF.1986"; flanks "12009986-,12014264^"; structure "0,1-2^"; splice_chain ",12012169-12012214^";
chr18	juncbase	alternative_donor	55912740	55916131	.	+	.	gene_id "alternative_donor.821"; transcript_id "alternative_donor.821"; gene_name "CUFF.2003"; flanks "55912740-,55916131^"; structure "1^,2^"; splice_chain "55912740^,55914856^";
chr18	juncbase	jcn_only_AA	44268830	44272132	.	-	.	gene_id "jcn_only_AA.795"; transcript_id "jcn_only_AA.795"; gene_name "CUFF.1997"; flanks "44268830-,44272132^"; structure "1-,2-"; splice_chain "44268882-,44268830-";
chr18	juncbase	cassette	163453	180236	.	+	.	gene_id "cassette.473"; transcript_id "cassette.473"; gene_name "CUFF.1980"; flanks "163453-,180236^"; structure "0,1-2^"; splice_chain ",178901-179037^";
chr18	juncbase	alternative_acceptor	77891075	77893495	.	+	.	gene_id "alternative_acceptor.596"; transcript_id "alternative_acceptor.596"; gene_name "CUFF.2041"; flanks "77891075-,77893495^"; structure "1-,2-"; splice_chain "77891575-,77893495-";
chr18	juncbase	jcn_only_AD	11999186	12009882	.	+	.	gene_id "jcn_only_AD.988"; transcript_id "jcn_only_AD.988"; gene_name "CUFF.1986"; flanks "11999186-,12009882^"; structure "1^,2^"; splice_chain "11999186^,12008590^";
chr18	juncbase	alternative_donor	55816801	55833020	.	+	.	gene_id "alternative_donor.822"; transcript_id "alternative_donor.822"; gene_name "CUFF.2003"; flanks "55816801-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55816801^";
chr18	juncbase	alternative_donor	55713250	55833020	.	+	.	gene_id "alternative_donor.823"; transcript_id "alternative_donor.823"; gene_name "CUFF.2003"; flanks "55713250-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55713250^";
chr18	juncbase	alternative_donor	55758859	55833020	.	+	.	gene_id "alternative_donor.824"; transcript_id "alternative_donor.824"; gene_name "CUFF.2003"; flanks "55758859-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55758859^";
chr18	juncbase	alternative_donor	55713020	55833020	.	+	.	gene_id "alternative_donor.825"; transcript_id "alternative_donor.825"; gene_name "CUFF.2003"; flanks "55713020-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55713020^";
chr18	juncbase	alternative_donor	55712847	55833020	.	+	.	gene_id "alternative_donor.826"; transcript_id "alternative_donor.826"; gene_name "CUFF.2003"; flanks "55712847-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55712847^";
chr18	juncbase	alternative_donor	55714742	55833020	.	+	.	gene_id "alternative_donor.827"; transcript_id "alternative_donor.827"; gene_name "CUFF.2003"; flanks "55714742-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55714742^";
chr18	juncbase	alternative_donor	55816791	55833020	.	+	.	gene_id "alternative_donor.828"; transcript_id "alternative_donor.828"; gene_name "CUFF.2003"; flanks "55816791-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55816791^";
chr18	juncbase	alternative_donor	55722108	55833020	.	+	.	gene_id "alternative_donor.829"; transcript_id "alternative_donor.829"; gene_name "CUFF.2003"; flanks "55722108-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55722108^";
chr18	juncbase	intron_retention	56002769	56008270	.	+	.	gene_id "intron_retention.721"; transcript_id "intron_retention.721"; gene_name ""; flanks "56002769-,56008270^"; structure "0,1^2-"; splice_chain ",56002769^56008270-";
chr18	juncbase	jcn_only_AD	55912740	55916131	.	+	.	gene_id "jcn_only_AD.989"; transcript_id "jcn_only_AD.989"; gene_name "CUFF.2003"; flanks "55912740-,55916131^"; structure "1^,2^"; splice_chain "55912740^,55914856^";
chr18	juncbase	alternative_donor	55816801	55833020	.	+	.	gene_id "alternative_donor.830"; transcript_id "alternative_donor.830"; gene_name "CUFF.2003"; flanks "55816801-,55833020^"; structure "1^,2^"; splice_chain "55722108^,55816801^";
chr18	juncbase	alternative_donor	55713250	55833020	.	+	.	gene_id "alternative_donor.831"; transcript_id "alternative_donor.831"; gene_name "CUFF.2003"; flanks "55713250-,55833020^"; structure "1^,2^"; splice_chain "55713250^,55722108^";
chr18	juncbase	alternative_donor	55711940	55833020	.	+	.	gene_id "alternative_donor.832"; transcript_id "alternative_donor.832"; gene_name "CUFF.2003"; flanks "55711940-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55722108^";
chr18	juncbase	alternative_donor	55758859	55833020	.	+	.	gene_id "alternative_donor.833"; transcript_id "alternative_donor.833"; gene_name "CUFF.2003"; flanks "55758859-,55833020^"; structure "1^,2^"; splice_chain "55722108^,55758859^";
chr18	juncbase	alternative_donor	55713020	55833020	.	+	.	gene_id "alternative_donor.834"; transcript_id "alternative_donor.834"; gene_name "CUFF.2003"; flanks "55713020-,55833020^"; structure "1^,2^"; splice_chain "55713020^,55722108^";
chr18	juncbase	alternative_donor	55712847	55833020	.	+	.	gene_id "alternative_donor.835"; transcript_id "alternative_donor.835"; gene_name "CUFF.2003"; flanks "55712847-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55722108^";
chr18	juncbase	alternative_donor	55714742	55833020	.	+	.	gene_id "alternative_donor.836"; transcript_id "alternative_donor.836"; gene_name "CUFF.2003"; flanks "55714742-,55833020^"; structure "1^,2^"; splice_chain "55714742^,55722108^";
chr18	juncbase	alternative_donor	55816791	55833020	.	+	.	gene_id "alternative_donor.837"; transcript_id "alternative_donor.837"; gene_name "CUFF.2003"; flanks "55816791-,55833020^"; structure "1^,2^"; splice_chain "55722108^,55816791^";
chr18	juncbase	intron_retention	56001124	56008270	.	+	.	gene_id "intron_retention.722"; transcript_id "intron_retention.722"; gene_name ""; flanks "56001124-,56008270^"; structure "0,1^2-"; splice_chain ",56001124^56008270-";
chr18	juncbase	jcn_only_AA	77891075	77893495	.	+	.	gene_id "jcn_only_AA.796"; transcript_id "jcn_only_AA.796"; gene_name "CUFF.2041"; flanks "77891075-,77893495^"; structure "1-,2-"; splice_chain "77891575-,77893495-";
chr18	juncbase	jcn_only_AA	67614768	67623991	.	-	.	gene_id "jcn_only_AA.797"; transcript_id "jcn_only_AA.797"; gene_name "CUFF.2032"; flanks "67614768-,67623991^"; structure "1-,2-"; splice_chain "67614768-,67563281-";
chr18	juncbase	jcn_only_AA	67614669	67623991	.	-	.	gene_id "jcn_only_AA.798"; transcript_id "jcn_only_AA.798"; gene_name "CUFF.2032"; flanks "67614669-,67623991^"; structure "1-,2-"; splice_chain "67614669-,67563281-";
chr18	juncbase	jcn_only_AD	72917148	72914295	.	-	.	gene_id "jcn_only_AD.990"; transcript_id "jcn_only_AD.990"; gene_name "CUFF.2035"; flanks "72917148-,72914295^"; structure "1^,2^"; splice_chain "72920375^,72917148^";
chr18	juncbase	jcn_only_AD	72920316	72914295	.	-	.	gene_id "jcn_only_AD.991"; transcript_id "jcn_only_AD.991"; gene_name "CUFF.2035"; flanks "72920316-,72914295^"; structure "1^,2^"; splice_chain "72920375^,72920316^";
chr18	juncbase	cassette	77489069	77513652	.	+	.	gene_id "cassette.474"; transcript_id "cassette.474"; gene_name "CUFF.2040"; flanks "77489069-,77513652^"; structure "0,1-2^"; splice_chain ",77496355-77496521^";
chr18	juncbase	cassette	56001124	56010138	.	+	.	gene_id "cassette.475"; transcript_id "cassette.475"; gene_name "CUFF.2003"; flanks "56001124-,56010138^"; structure "0,1-2^"; splice_chain ",56008910-56009029^";
chr18	juncbase	alternative_donor	76738786	76737429	.	-	.	gene_id "alternative_donor.838"; transcript_id "alternative_donor.838"; gene_name ""; flanks "76738786-,76737429^"; structure "1^,2^"; splice_chain "76738786^,76738463^";
chr18	juncbase	alternative_donor	76737555	76737429	.	-	.	gene_id "alternative_donor.839"; transcript_id "alternative_donor.839"; gene_name ""; flanks "76737555-,76737429^"; structure "1^,2^"; splice_chain "76738463^,76737555^";
chr18	juncbase	alternative_donor	14728513	14797660	.	+	.	gene_id "alternative_donor.840"; transcript_id "alternative_donor.840"; gene_name "CUFF.1991"; flanks "14728513-,14797660^"; structure "1^,2^"; splice_chain "14728513^,14796414^";
chr18	juncbase	alternative_donor	77891075	77893495	.	+	.	gene_id "alternative_donor.841"; transcript_id "alternative_donor.841"; gene_name "CUFF.2041"; flanks "77891075-,77893495^"; structure "1^,2^"; splice_chain "77891075^,77891689^";
chr18	juncbase	jcn_only_AD	72917148	72914295	.	-	.	gene_id "jcn_only_AD.992"; transcript_id "jcn_only_AD.992"; gene_name "CUFF.2035"; flanks "72917148-,72914295^"; structure "1^,2^"; splice_chain "72920316^,72917148^";
chr18	juncbase	jcn_only_AD	72920375	72914295	.	-	.	gene_id "jcn_only_AD.993"; transcript_id "jcn_only_AD.993"; gene_name "CUFF.2035"; flanks "72920375-,72914295^"; structure "1^,2^"; splice_chain "72920375^,72920316^";
chr18	juncbase	alternative_acceptor	14808578	14822604	.	+	.	gene_id "alternative_acceptor.597"; transcript_id "alternative_acceptor.597"; gene_name ""; flanks "14808578-,14822604^"; structure "1-,2-"; splice_chain "14808671-,14822604-";
chr18	juncbase	alternative_donor	72917148	72914295	.	-	.	gene_id "alternative_donor.842"; transcript_id "alternative_donor.842"; gene_name "CUFF.2035"; flanks "72917148-,72914295^"; structure "1^,2^"; splice_chain "72920375^,72917148^";
chr18	juncbase	alternative_donor	72920316	72914295	.	-	.	gene_id "alternative_donor.843"; transcript_id "alternative_donor.843"; gene_name "CUFF.2035"; flanks "72920316-,72914295^"; structure "1^,2^"; splice_chain "72920375^,72920316^";
chr18	juncbase	cassette	44336341	44284627	.	-	.	gene_id "cassette.476"; transcript_id "cassette.476"; gene_name "CUFF.1997"; flanks "44336341-,44284627^"; structure "0,1-2^"; splice_chain ",44301432-44301325^";
chr18	juncbase	jcn_only_AD	55816801	55833020	.	+	.	gene_id "jcn_only_AD.994"; transcript_id "jcn_only_AD.994"; gene_name "CUFF.2003"; flanks "55816801-,55833020^"; structure "1^,2^"; splice_chain "55816791^,55816801^";
chr18	juncbase	jcn_only_AD	55713250	55833020	.	+	.	gene_id "jcn_only_AD.995"; transcript_id "jcn_only_AD.995"; gene_name "CUFF.2003"; flanks "55713250-,55833020^"; structure "1^,2^"; splice_chain "55713250^,55816791^";
chr18	juncbase	jcn_only_AD	55711940	55833020	.	+	.	gene_id "jcn_only_AD.996"; transcript_id "jcn_only_AD.996"; gene_name "CUFF.2003"; flanks "55711940-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55816791^";
chr18	juncbase	jcn_only_AD	55758859	55833020	.	+	.	gene_id "jcn_only_AD.997"; transcript_id "jcn_only_AD.997"; gene_name "CUFF.2003"; flanks "55758859-,55833020^"; structure "1^,2^"; splice_chain "55758859^,55816791^";
chr18	juncbase	jcn_only_AD	55713020	55833020	.	+	.	gene_id "jcn_only_AD.998"; transcript_id "jcn_only_AD.998"; gene_name "CUFF.2003"; flanks "55713020-,55833020^"; structure "1^,2^"; splice_chain "55713020^,55816791^";
chr18	juncbase	jcn_only_AD	55712847	55833020	.	+	.	gene_id "jcn_only_AD.999"; transcript_id "jcn_only_AD.999"; gene_name "CUFF.2003"; flanks "55712847-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55816791^";
chr18	juncbase	jcn_only_AD	55714742	55833020	.	+	.	gene_id "jcn_only_AD.1000"; transcript_id "jcn_only_AD.1000"; gene_name "CUFF.2003"; flanks "55714742-,55833020^"; structure "1^,2^"; splice_chain "55714742^,55816791^";
chr18	juncbase	jcn_only_AD	55722108	55833020	.	+	.	gene_id "jcn_only_AD.1001"; transcript_id "jcn_only_AD.1001"; gene_name "CUFF.2003"; flanks "55722108-,55833020^"; structure "1^,2^"; splice_chain "55722108^,55816791^";
chr18	juncbase	cassette	61379927	61387247	.	+	.	gene_id "cassette.477"; transcript_id "cassette.477"; gene_name "CUFF.2021"; flanks "61379927-,61387247^"; structure "0,1-2^"; splice_chain ",61383269-61383386^";
chr18	juncbase	alternative_donor	55816801	55833020	.	+	.	gene_id "alternative_donor.844"; transcript_id "alternative_donor.844"; gene_name "CUFF.2003"; flanks "55816801-,55833020^"; structure "1^,2^"; splice_chain "55714742^,55816801^";
chr18	juncbase	alternative_donor	55713250	55833020	.	+	.	gene_id "alternative_donor.845"; transcript_id "alternative_donor.845"; gene_name "CUFF.2003"; flanks "55713250-,55833020^"; structure "1^,2^"; splice_chain "55713250^,55714742^";
chr18	juncbase	alternative_donor	55711940	55833020	.	+	.	gene_id "alternative_donor.846"; transcript_id "alternative_donor.846"; gene_name "CUFF.2003"; flanks "55711940-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55714742^";
chr18	juncbase	alternative_donor	55758859	55833020	.	+	.	gene_id "alternative_donor.847"; transcript_id "alternative_donor.847"; gene_name "CUFF.2003"; flanks "55758859-,55833020^"; structure "1^,2^"; splice_chain "55714742^,55758859^";
chr18	juncbase	alternative_donor	55713020	55833020	.	+	.	gene_id "alternative_donor.848"; transcript_id "alternative_donor.848"; gene_name "CUFF.2003"; flanks "55713020-,55833020^"; structure "1^,2^"; splice_chain "55713020^,55714742^";
chr18	juncbase	alternative_donor	55712847	55833020	.	+	.	gene_id "alternative_donor.849"; transcript_id "alternative_donor.849"; gene_name "CUFF.2003"; flanks "55712847-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55714742^";
chr18	juncbase	alternative_donor	55816791	55833020	.	+	.	gene_id "alternative_donor.850"; transcript_id "alternative_donor.850"; gene_name "CUFF.2003"; flanks "55816791-,55833020^"; structure "1^,2^"; splice_chain "55714742^,55816791^";
chr18	juncbase	alternative_donor	55722108	55833020	.	+	.	gene_id "alternative_donor.851"; transcript_id "alternative_donor.851"; gene_name "CUFF.2003"; flanks "55722108-,55833020^"; structure "1^,2^"; splice_chain "55714742^,55722108^";
chr18	juncbase	cassette	44497285	44444211	.	-	.	gene_id "cassette.478"; transcript_id "cassette.478"; gene_name "CUFF.1999"; flanks "44497285-,44444211^"; structure "0,1-2^"; splice_chain ",44471017-44470543^";
chr18	juncbase	jcn_only_AD	14728513	14797660	.	+	.	gene_id "jcn_only_AD.1002"; transcript_id "jcn_only_AD.1002"; gene_name "CUFF.1991"; flanks "14728513-,14797660^"; structure "1^,2^"; splice_chain "14728513^,14796414^";
chr18	juncbase	alternative_acceptor	63430288	63476940	.	+	.	gene_id "alternative_acceptor.598"; transcript_id "alternative_acceptor.598"; gene_name "CUFF.2027"; flanks "63430288-,63476940^"; structure "1-,2-"; splice_chain "63470351-,63476940-";
chr18	juncbase	jcn_only_AD	55919286	55983214	.	+	.	gene_id "jcn_only_AD.1003"; transcript_id "jcn_only_AD.1003"; gene_name "CUFF.2003"; flanks "55919286-,55983214^"; structure "1^,2^"; splice_chain "55919286^,55981821^";
chr18	juncbase	alternative_donor	55919286	55983214	.	+	.	gene_id "alternative_donor.852"; transcript_id "alternative_donor.852"; gene_name "CUFF.2003"; flanks "55919286-,55983214^"; structure "1^,2^"; splice_chain "55919286^,55981821^";
chr18	juncbase	cassette	56001124	56016769	.	+	.	gene_id "cassette.479"; transcript_id "cassette.479"; gene_name "CUFF.2003"; flanks "56001124-,56016769^"; structure "0,1-2^"; splice_chain ",56010138-56010335^";
chr18	juncbase	jcn_only_AD	56001124	56008270	.	+	.	gene_id "jcn_only_AD.1004"; transcript_id "jcn_only_AD.1004"; gene_name "CUFF.2003"; flanks "56001124-,56008270^"; structure "1^,2^"; splice_chain "56001124^,56002769^";
chr18	juncbase	cassette	44500022	44483596	.	-	.	gene_id "cassette.480"; transcript_id "cassette.480"; gene_name "CUFF.1999"; flanks "44500022-,44483596^"; structure "0,1-2^"; splice_chain ",44486278-44486190^";
chr18	juncbase	alternative_donor	56033460	56034978	.	+	.	gene_id "alternative_donor.853"; transcript_id "alternative_donor.853"; gene_name "CUFF.2003"; flanks "56033460-,56034978^"; structure "1^,2^"; splice_chain "56033460^,56034458^";
chr18	juncbase	alternative_acceptor	12014372	12021701	.	+	.	gene_id "alternative_acceptor.599"; transcript_id "alternative_acceptor.599"; gene_name "CUFF.1986"; flanks "12014372-,12021701^"; structure "1-,2-"; splice_chain "12017613-,12021701-";
chr18	juncbase	alternative_acceptor	12014372	12028042	.	+	.	gene_id "alternative_acceptor.600"; transcript_id "alternative_acceptor.600"; gene_name "CUFF.1986"; flanks "12014372-,12028042^"; structure "1-,2-"; splice_chain "12017613-,12028042-";
chr18	juncbase	jcn_only_AA	66567474	66569425	.	-	.	gene_id "jcn_only_AA.799"; transcript_id "jcn_only_AA.799"; gene_name "CUFF.2031"; flanks "66567474-,66569425^"; structure "1-,2-"; splice_chain "66567508-,66567474-";
chr18	juncbase	alternative_donor	76737555	76737429	.	-	.	gene_id "alternative_donor.854"; transcript_id "alternative_donor.854"; gene_name "CUFF.2039"; flanks "76737555-,76737429^"; structure "1^,2^"; splice_chain "76738786^,76737555^";
chr18	juncbase	alternative_donor	76738463	76737429	.	-	.	gene_id "alternative_donor.855"; transcript_id "alternative_donor.855"; gene_name "CUFF.2039"; flanks "76738463-,76737429^"; structure "1^,2^"; splice_chain "76738786^,76738463^";
chr18	juncbase	alternative_donor	11999186	12009882	.	+	.	gene_id "alternative_donor.856"; transcript_id "alternative_donor.856"; gene_name "CUFF.1986"; flanks "11999186-,12009882^"; structure "1^,2^"; splice_chain "11999186^,12008590^";
chr18	juncbase	alternative_acceptor	77875533	77905318	.	+	.	gene_id "alternative_acceptor.601"; transcript_id "alternative_acceptor.601"; gene_name ""; flanks "77875533-,77905318^"; structure "1-,2-"; splice_chain "77890986-,77905318-";
chr18	juncbase	intron_retention	44486190	44483596	.	-	.	gene_id "intron_retention.723"; transcript_id "intron_retention.723"; gene_name ""; flanks "44486190-,44483596^"; structure "0,1^2-"; splice_chain ",44486190^44483596-";
chr18	juncbase	jcn_only_AD	14784362	14784462	.	+	.	gene_id "jcn_only_AD.1005"; transcript_id "jcn_only_AD.1005"; gene_name "CUFF.1991"; flanks "14784362-,14784462^"; structure "1^,2^"; splice_chain "14784362^,14784363^";
chr18	juncbase	cassette	12009986	12014264	.	+	.	gene_id "cassette.481"; transcript_id "cassette.481"; gene_name "CUFF.1986"; flanks "12009986-,12014264^"; structure "0,1-2^"; splice_chain ",12012169-12012348^";
chr18	juncbase	cassette	55919286	55989657	.	+	.	gene_id "cassette.482"; transcript_id "cassette.482"; gene_name "CUFF.2003"; flanks "55919286-,55989657^"; structure "0,1-2^"; splice_chain ",55983214-55983264^";
chr18	juncbase	jcn_only_AD	55816801	55833020	.	+	.	gene_id "jcn_only_AD.1006"; transcript_id "jcn_only_AD.1006"; gene_name "CUFF.2003"; flanks "55816801-,55833020^"; structure "1^,2^"; splice_chain "55713020^,55816801^";
chr18	juncbase	jcn_only_AD	55713250	55833020	.	+	.	gene_id "jcn_only_AD.1007"; transcript_id "jcn_only_AD.1007"; gene_name "CUFF.2003"; flanks "55713250-,55833020^"; structure "1^,2^"; splice_chain "55713020^,55713250^";
chr18	juncbase	jcn_only_AD	55711940	55833020	.	+	.	gene_id "jcn_only_AD.1008"; transcript_id "jcn_only_AD.1008"; gene_name "CUFF.2003"; flanks "55711940-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55713020^";
chr18	juncbase	jcn_only_AD	55758859	55833020	.	+	.	gene_id "jcn_only_AD.1009"; transcript_id "jcn_only_AD.1009"; gene_name "CUFF.2003"; flanks "55758859-,55833020^"; structure "1^,2^"; splice_chain "55713020^,55758859^";
chr18	juncbase	jcn_only_AD	55712847	55833020	.	+	.	gene_id "jcn_only_AD.1010"; transcript_id "jcn_only_AD.1010"; gene_name "CUFF.2003"; flanks "55712847-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55713020^";
chr18	juncbase	jcn_only_AD	55714742	55833020	.	+	.	gene_id "jcn_only_AD.1011"; transcript_id "jcn_only_AD.1011"; gene_name "CUFF.2003"; flanks "55714742-,55833020^"; structure "1^,2^"; splice_chain "55713020^,55714742^";
chr18	juncbase	jcn_only_AD	55816791	55833020	.	+	.	gene_id "jcn_only_AD.1012"; transcript_id "jcn_only_AD.1012"; gene_name "CUFF.2003"; flanks "55816791-,55833020^"; structure "1^,2^"; splice_chain "55713020^,55816791^";
chr18	juncbase	jcn_only_AD	55722108	55833020	.	+	.	gene_id "jcn_only_AD.1013"; transcript_id "jcn_only_AD.1013"; gene_name "CUFF.2003"; flanks "55722108-,55833020^"; structure "1^,2^"; splice_chain "55713020^,55722108^";
chr18	juncbase	jcn_only_AA	55713020	55833024	.	+	.	gene_id "jcn_only_AA.800"; transcript_id "jcn_only_AA.800"; gene_name ""; flanks "55713020-,55833024^"; structure "1-,2-"; splice_chain "55833020-,55833024-";
chr18	juncbase	alternative_donor	12014372	12028042	.	+	.	gene_id "alternative_donor.857"; transcript_id "alternative_donor.857"; gene_name "CUFF.1986"; flanks "12014372-,12028042^"; structure "1^,2^"; splice_chain "12014372^,12021821^";
chr18	juncbase	alternative_acceptor	44268830	44272132	.	-	.	gene_id "alternative_acceptor.602"; transcript_id "alternative_acceptor.602"; gene_name "CUFF.1997"; flanks "44268830-,44272132^"; structure "1-,2-"; splice_chain "44268882-,44268830-";
chr18	juncbase	cassette	44486190	44483596	.	-	.	gene_id "cassette.483"; transcript_id "cassette.483"; gene_name "CUFF.1999"; flanks "44486190-,44483596^"; structure "0,1-2^"; splice_chain ",44484169-44484065^";
chr18	juncbase	jcn_only_AD	76737555	76737429	.	-	.	gene_id "jcn_only_AD.1014"; transcript_id "jcn_only_AD.1014"; gene_name "CUFF.2039"; flanks "76737555-,76737429^"; structure "1^,2^"; splice_chain "76738786^,76737555^";
chr18	juncbase	jcn_only_AD	76738463	76737429	.	-	.	gene_id "jcn_only_AD.1015"; transcript_id "jcn_only_AD.1015"; gene_name "CUFF.2039"; flanks "76738463-,76737429^"; structure "1^,2^"; splice_chain "76738786^,76738463^";
chr18	juncbase	cassette	61067281	61064486	.	-	.	gene_id "cassette.484"; transcript_id "cassette.484"; gene_name "CUFF.2018"; flanks "61067281-,61064486^"; structure "0,1-2^"; splice_chain ",61066556-61066475^";
chr18	juncbase	intron_retention	12658204	12658573	.	+	.	gene_id "intron_retention.724"; transcript_id "intron_retention.724"; gene_name "CUFF.1989"; flanks "12658204-,12658573^"; structure "0,1^2-"; splice_chain ",12658204^12658573-";
chr18	juncbase	alternative_donor	72920375	72914295	.	-	.	gene_id "alternative_donor.858"; transcript_id "alternative_donor.858"; gene_name "CUFF.2035"; flanks "72920375-,72914295^"; structure "1^,2^"; splice_chain "72920375^,72917148^";
chr18	juncbase	alternative_donor	72920316	72914295	.	-	.	gene_id "alternative_donor.859"; transcript_id "alternative_donor.859"; gene_name "CUFF.2035"; flanks "72920316-,72914295^"; structure "1^,2^"; splice_chain "72920316^,72917148^";
chr18	juncbase	cassette	44500022	44471017	.	-	.	gene_id "cassette.485"; transcript_id "cassette.485"; gene_name "CUFF.1999"; flanks "44500022-,44471017^"; structure "0,1-2^"; splice_chain ",44483596-44483490^";
chr18	juncbase	alternative_donor	14784362	14784462	.	+	.	gene_id "alternative_donor.860"; transcript_id "alternative_donor.860"; gene_name "CUFF.1991"; flanks "14784362-,14784462^"; structure "1^,2^"; splice_chain "14784362^,14784363^";
chr18	juncbase	alternative_donor	12012214	12014264	.	+	.	gene_id "alternative_donor.861"; transcript_id "alternative_donor.861"; gene_name "CUFF.1986"; flanks "12012214-,12014264^"; structure "1^,2^"; splice_chain "12012214^,12012348^";
chr18	juncbase	jcn_only_AA	61060782	61064267	.	-	.	gene_id "jcn_only_AA.801"; transcript_id "jcn_only_AA.801"; gene_name "CUFF.2018"; flanks "61060782-,61064267^"; structure "1-,2-"; splice_chain "61060799-,61060782-";
chr18	juncbase	cassette	44336341	44272218	.	-	.	gene_id "cassette.486"; transcript_id "cassette.486"; gene_name "CUFF.1997"; flanks "44336341-,44272218^"; structure "0,1-2^"; splice_chain ",44284627-44284535^";
chr18	juncbase	jcn_only_AD	55816801	55833020	.	+	.	gene_id "jcn_only_AD.1016"; transcript_id "jcn_only_AD.1016"; gene_name "CUFF.2003"; flanks "55816801-,55833020^"; structure "1^,2^"; splice_chain "55713250^,55816801^";
chr18	juncbase	jcn_only_AD	55711940	55833020	.	+	.	gene_id "jcn_only_AD.1017"; transcript_id "jcn_only_AD.1017"; gene_name "CUFF.2003"; flanks "55711940-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55713250^";
chr18	juncbase	jcn_only_AD	55758859	55833020	.	+	.	gene_id "jcn_only_AD.1018"; transcript_id "jcn_only_AD.1018"; gene_name "CUFF.2003"; flanks "55758859-,55833020^"; structure "1^,2^"; splice_chain "55713250^,55758859^";
chr18	juncbase	jcn_only_AD	55713020	55833020	.	+	.	gene_id "jcn_only_AD.1019"; transcript_id "jcn_only_AD.1019"; gene_name "CUFF.2003"; flanks "55713020-,55833020^"; structure "1^,2^"; splice_chain "55713020^,55713250^";
chr18	juncbase	jcn_only_AD	55712847	55833020	.	+	.	gene_id "jcn_only_AD.1020"; transcript_id "jcn_only_AD.1020"; gene_name "CUFF.2003"; flanks "55712847-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55713250^";
chr18	juncbase	jcn_only_AD	55714742	55833020	.	+	.	gene_id "jcn_only_AD.1021"; transcript_id "jcn_only_AD.1021"; gene_name "CUFF.2003"; flanks "55714742-,55833020^"; structure "1^,2^"; splice_chain "55713250^,55714742^";
chr18	juncbase	jcn_only_AD	55816791	55833020	.	+	.	gene_id "jcn_only_AD.1022"; transcript_id "jcn_only_AD.1022"; gene_name "CUFF.2003"; flanks "55816791-,55833020^"; structure "1^,2^"; splice_chain "55713250^,55816791^";
chr18	juncbase	jcn_only_AD	55722108	55833020	.	+	.	gene_id "jcn_only_AD.1023"; transcript_id "jcn_only_AD.1023"; gene_name "CUFF.2003"; flanks "55722108-,55833020^"; structure "1^,2^"; splice_chain "55713250^,55722108^";
chr18	juncbase	jcn_only_AA	4775122	4946881	.	-	.	gene_id "jcn_only_AA.802"; transcript_id "jcn_only_AA.802"; gene_name "CUFF.1983"; flanks "4775122-,4946881^"; structure "1-,2-"; splice_chain "4807994-,4775122-";
chr18	juncbase	cassette	61077523	61071059	.	-	.	gene_id "cassette.487"; transcript_id "cassette.487"; gene_name "CUFF.2018"; flanks "61077523-,61071059^"; structure "0,1-2^"; splice_chain ",61074732-61074665^";
chr18	juncbase	alternative_acceptor	11999186	12009882	.	+	.	gene_id "alternative_acceptor.603"; transcript_id "alternative_acceptor.603"; gene_name "CUFF.1986"; flanks "11999186-,12009882^"; structure "1-,2-"; splice_chain "12008332-,12009882-";
chr18	juncbase	alternative_acceptor	12658342	12658573	.	+	.	gene_id "alternative_acceptor.604"; transcript_id "alternative_acceptor.604"; gene_name "CUFF.1989"; flanks "12658342-,12658573^"; structure "1-,2-"; splice_chain "12658550-,12658573-";
chr18	juncbase	jcn_only_AA	67563281	67613970	.	-	.	gene_id "jcn_only_AA.803"; transcript_id "jcn_only_AA.803"; gene_name "CUFF.2032"; flanks "67563281-,67613970^"; structure "1-,2-"; splice_chain "67611804-,67563281-";
chr18	juncbase	alternative_acceptor	67614006	67614597	.	-	.	gene_id "alternative_acceptor.605"; transcript_id "alternative_acceptor.605"; gene_name "CUFF.2032"; flanks "67614006-,67614597^"; structure "1-,2-"; splice_chain "67614305-,67614006-";
chr18	juncbase	alternative_acceptor	67563281	67613970	.	-	.	gene_id "alternative_acceptor.606"; transcript_id "alternative_acceptor.606"; gene_name "CUFF.2032"; flanks "67563281-,67613970^"; structure "1-,2-"; splice_chain "67611804-,67563281-";
chr18	juncbase	jcn_only_AD	12014372	12028042	.	+	.	gene_id "jcn_only_AD.1024"; transcript_id "jcn_only_AD.1024"; gene_name "CUFF.1986"; flanks "12014372-,12028042^"; structure "1^,2^"; splice_chain "12014372^,12021821^";
chr18	juncbase	alternative_acceptor	66567474	66569425	.	-	.	gene_id "alternative_acceptor.607"; transcript_id "alternative_acceptor.607"; gene_name "CUFF.2031"; flanks "66567474-,66569425^"; structure "1-,2-"; splice_chain "66567508-,66567474-";
chr18	juncbase	jcn_only_AA	12014372	12017613	.	+	.	gene_id "jcn_only_AA.804"; transcript_id "jcn_only_AA.804"; gene_name "CUFF.1986"; flanks "12014372-,12017613^"; structure "1-,2-"; splice_chain "12017613-,12021701-";
chr18	juncbase	jcn_only_AA	12014372	12028042	.	+	.	gene_id "jcn_only_AA.805"; transcript_id "jcn_only_AA.805"; gene_name "CUFF.1986"; flanks "12014372-,12028042^"; structure "1-,2-"; splice_chain "12021701-,12028042-";
chr18	juncbase	jcn_only_AD	55713250	55833020	.	+	.	gene_id "jcn_only_AD.1025"; transcript_id "jcn_only_AD.1025"; gene_name "CUFF.2003"; flanks "55713250-,55833020^"; structure "1^,2^"; splice_chain "55713250^,55816801^";
chr18	juncbase	jcn_only_AD	55711940	55833020	.	+	.	gene_id "jcn_only_AD.1026"; transcript_id "jcn_only_AD.1026"; gene_name "CUFF.2003"; flanks "55711940-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55816801^";
chr18	juncbase	jcn_only_AD	55758859	55833020	.	+	.	gene_id "jcn_only_AD.1027"; transcript_id "jcn_only_AD.1027"; gene_name "CUFF.2003"; flanks "55758859-,55833020^"; structure "1^,2^"; splice_chain "55758859^,55816801^";
chr18	juncbase	jcn_only_AD	55713020	55833020	.	+	.	gene_id "jcn_only_AD.1028"; transcript_id "jcn_only_AD.1028"; gene_name "CUFF.2003"; flanks "55713020-,55833020^"; structure "1^,2^"; splice_chain "55713020^,55816801^";
chr18	juncbase	jcn_only_AD	55712847	55833020	.	+	.	gene_id "jcn_only_AD.1029"; transcript_id "jcn_only_AD.1029"; gene_name "CUFF.2003"; flanks "55712847-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55816801^";
chr18	juncbase	jcn_only_AD	55714742	55833020	.	+	.	gene_id "jcn_only_AD.1030"; transcript_id "jcn_only_AD.1030"; gene_name "CUFF.2003"; flanks "55714742-,55833020^"; structure "1^,2^"; splice_chain "55714742^,55816801^";
chr18	juncbase	jcn_only_AD	55816791	55833020	.	+	.	gene_id "jcn_only_AD.1031"; transcript_id "jcn_only_AD.1031"; gene_name "CUFF.2003"; flanks "55816791-,55833020^"; structure "1^,2^"; splice_chain "55816791^,55816801^";
chr18	juncbase	jcn_only_AD	55722108	55833020	.	+	.	gene_id "jcn_only_AD.1032"; transcript_id "jcn_only_AD.1032"; gene_name "CUFF.2003"; flanks "55722108-,55833020^"; structure "1^,2^"; splice_chain "55722108^,55816801^";
chr18	juncbase	jcn_only_AD	76738786	76737429	.	-	.	gene_id "jcn_only_AD.1033"; transcript_id "jcn_only_AD.1033"; gene_name "CUFF.2039"; flanks "76738786-,76737429^"; structure "1^,2^"; splice_chain "76738786^,76737555^";
chr18	juncbase	jcn_only_AD	76738463	76737429	.	-	.	gene_id "jcn_only_AD.1034"; transcript_id "jcn_only_AD.1034"; gene_name "CUFF.2039"; flanks "76738463-,76737429^"; structure "1^,2^"; splice_chain "76738463^,76737555^";
chr18	juncbase	alternative_acceptor	4775122	4946881	.	-	.	gene_id "alternative_acceptor.608"; transcript_id "alternative_acceptor.608"; gene_name "CUFF.1983"; flanks "4775122-,4946881^"; structure "1-,2-"; splice_chain "4807994-,4775122-";
chr18	juncbase	jcn_only_AA	67614768	67623991	.	-	.	gene_id "jcn_only_AA.806"; transcript_id "jcn_only_AA.806"; gene_name "CUFF.2032"; flanks "67614768-,67623991^"; structure "1-,2-"; splice_chain "67614768-,67614669-";
chr18	juncbase	jcn_only_AA	67563281	67623991	.	-	.	gene_id "jcn_only_AA.807"; transcript_id "jcn_only_AA.807"; gene_name "CUFF.2032"; flanks "67563281-,67623991^"; structure "1-,2-"; splice_chain "67614669-,67563281-";
chr18	juncbase	intron_retention	44426670	44424802	.	-	.	gene_id "intron_retention.725"; transcript_id "intron_retention.725"; gene_name "CUFF.1999"; flanks "44426670-,44424802^"; structure "0,1^2-"; splice_chain ",44426670^44424802-";
chr18	juncbase	intron_retention	56056424	56057878	.	+	.	gene_id "intron_retention.726"; transcript_id "intron_retention.726"; gene_name "CUFF.2003"; flanks "56056424-,56057878^"; structure "0,1^2-"; splice_chain ",56056424^56057878-";
chr18	juncbase	cassette	56001124	56008910	.	+	.	gene_id "cassette.488"; transcript_id "cassette.488"; gene_name "CUFF.2003"; flanks "56001124-,56008910^"; structure "0,1-2^"; splice_chain ",56008270-56008401^";
chr18	juncbase	cassette	158714	163308	.	+	.	gene_id "cassette.489"; transcript_id "cassette.489"; gene_name "CUFF.1980"; flanks "158714-,163308^"; structure "0,1-2^"; splice_chain ",162983-163174^";
chr18	juncbase	alternative_donor	55816801	55833020	.	+	.	gene_id "alternative_donor.862"; transcript_id "alternative_donor.862"; gene_name "CUFF.2003"; flanks "55816801-,55833020^"; structure "1^,2^"; splice_chain "55816791^,55816801^";
chr18	juncbase	alternative_donor	55713250	55833020	.	+	.	gene_id "alternative_donor.863"; transcript_id "alternative_donor.863"; gene_name "CUFF.2003"; flanks "55713250-,55833020^"; structure "1^,2^"; splice_chain "55713250^,55816791^";
chr18	juncbase	alternative_donor	55711940	55833020	.	+	.	gene_id "alternative_donor.864"; transcript_id "alternative_donor.864"; gene_name "CUFF.2003"; flanks "55711940-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55816791^";
chr18	juncbase	alternative_donor	55758859	55833020	.	+	.	gene_id "alternative_donor.865"; transcript_id "alternative_donor.865"; gene_name "CUFF.2003"; flanks "55758859-,55833020^"; structure "1^,2^"; splice_chain "55758859^,55816791^";
chr18	juncbase	alternative_donor	55713020	55833020	.	+	.	gene_id "alternative_donor.866"; transcript_id "alternative_donor.866"; gene_name "CUFF.2003"; flanks "55713020-,55833020^"; structure "1^,2^"; splice_chain "55713020^,55816791^";
chr18	juncbase	alternative_donor	55712847	55833020	.	+	.	gene_id "alternative_donor.867"; transcript_id "alternative_donor.867"; gene_name "CUFF.2003"; flanks "55712847-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55816791^";
chr18	juncbase	alternative_donor	55714742	55833020	.	+	.	gene_id "alternative_donor.868"; transcript_id "alternative_donor.868"; gene_name "CUFF.2003"; flanks "55714742-,55833020^"; structure "1^,2^"; splice_chain "55714742^,55816791^";
chr18	juncbase	alternative_donor	55722108	55833020	.	+	.	gene_id "alternative_donor.869"; transcript_id "alternative_donor.869"; gene_name "CUFF.2003"; flanks "55722108-,55833020^"; structure "1^,2^"; splice_chain "55722108^,55816791^";
chr18	juncbase	intron_retention	11981692	11999061	.	+	.	gene_id "intron_retention.727"; transcript_id "intron_retention.727"; gene_name ""; flanks "11981692-,11999061^"; structure "0,1^2-"; splice_chain ",11981692^11999061-";
chr18	juncbase	intron_retention	61064267	61060782	.	-	.	gene_id "intron_retention.728"; transcript_id "intron_retention.728"; gene_name "CUFF.2018"; flanks "61064267-,61060782^"; structure "0,1^2-"; splice_chain ",61064267^61060782-";
chr18	juncbase	jcn_only_AA	77875533	77905318	.	+	.	gene_id "jcn_only_AA.808"; transcript_id "jcn_only_AA.808"; gene_name ""; flanks "77875533-,77905318^"; structure "1-,2-"; splice_chain "77890986-,77905318-";
chr18	juncbase	cassette	44470543	44435578	.	-	.	gene_id "cassette.490"; transcript_id "cassette.490"; gene_name "CUFF.1999"; flanks "44470543-,44435578^"; structure "0,1-2^"; splice_chain ",44444211-44444127^";
chr18	juncbase	alternative_donor	72917148	72914295	.	-	.	gene_id "alternative_donor.870"; transcript_id "alternative_donor.870"; gene_name "CUFF.2035"; flanks "72917148-,72914295^"; structure "1^,2^"; splice_chain "72920316^,72917148^";
chr18	juncbase	alternative_donor	72920375	72914295	.	-	.	gene_id "alternative_donor.871"; transcript_id "alternative_donor.871"; gene_name "CUFF.2035"; flanks "72920375-,72914295^"; structure "1^,2^"; splice_chain "72920375^,72920316^";
chr18	juncbase	jcn_only_AD	55816801	55833020	.	+	.	gene_id "jcn_only_AD.1035"; transcript_id "jcn_only_AD.1035"; gene_name "CUFF.2003"; flanks "55816801-,55833020^"; structure "1^,2^"; splice_chain "55722108^,55816801^";
chr18	juncbase	jcn_only_AD	55713250	55833020	.	+	.	gene_id "jcn_only_AD.1036"; transcript_id "jcn_only_AD.1036"; gene_name "CUFF.2003"; flanks "55713250-,55833020^"; structure "1^,2^"; splice_chain "55713250^,55722108^";
chr18	juncbase	jcn_only_AD	55711940	55833020	.	+	.	gene_id "jcn_only_AD.1037"; transcript_id "jcn_only_AD.1037"; gene_name "CUFF.2003"; flanks "55711940-,55833020^"; structure "1^,2^"; splice_chain "55711940^,55722108^";
chr18	juncbase	jcn_only_AD	55758859	55833020	.	+	.	gene_id "jcn_only_AD.1038"; transcript_id "jcn_only_AD.1038"; gene_name "CUFF.2003"; flanks "55758859-,55833020^"; structure "1^,2^"; splice_chain "55722108^,55758859^";
chr18	juncbase	jcn_only_AD	55713020	55833020	.	+	.	gene_id "jcn_only_AD.1039"; transcript_id "jcn_only_AD.1039"; gene_name "CUFF.2003"; flanks "55713020-,55833020^"; structure "1^,2^"; splice_chain "55713020^,55722108^";
chr18	juncbase	jcn_only_AD	55712847	55833020	.	+	.	gene_id "jcn_only_AD.1040"; transcript_id "jcn_only_AD.1040"; gene_name "CUFF.2003"; flanks "55712847-,55833020^"; structure "1^,2^"; splice_chain "55712847^,55722108^";
chr18	juncbase	jcn_only_AD	55714742	55833020	.	+	.	gene_id "jcn_only_AD.1041"; transcript_id "jcn_only_AD.1041"; gene_name "CUFF.2003"; flanks "55714742-,55833020^"; structure "1^,2^"; splice_chain "55714742^,55722108^";
chr18	juncbase	jcn_only_AD	55816791	55833020	.	+	.	gene_id "jcn_only_AD.1042"; transcript_id "jcn_only_AD.1042"; gene_name "CUFF.2003"; flanks "55816791-,55833020^"; structure "1^,2^"; splice_chain "55722108^,55816791^";
chr18	juncbase	jcn_only_AD	77875467	77890986	.	+	.	gene_id "jcn_only_AD.1043"; transcript_id "jcn_only_AD.1043"; gene_name "CUFF.2041"; flanks "77875467-,77890986^"; structure "1^,2^"; splice_chain "77875467^,77875533^";
chr18	juncbase	jcn_only_AD	61323210	61377413	.	+	.	gene_id "jcn_only_AD.1044"; transcript_id "jcn_only_AD.1044"; gene_name "CUFF.2021"; flanks "61323210-,61377413^"; structure "1^,2^"; splice_chain "61323210^,61370240^";
chrX	juncbase	jcn_only_AD	148867505	148867664	.	+	.	gene_id "jcn_only_AD.1045"; transcript_id "jcn_only_AD.1045"; gene_name "CUFF.2379"; flanks "148867505-,148867664^"; structure "1^,2^"; splice_chain "148863690^,148867505^";
chrX	juncbase	jcn_only_AD	148863658	148867664	.	+	.	gene_id "jcn_only_AD.1046"; transcript_id "jcn_only_AD.1046"; gene_name "CUFF.2379"; flanks "148863658-,148867664^"; structure "1^,2^"; splice_chain "148863658^,148863690^";
chrX	juncbase	jcn_only_AD	106185206	106184862	.	-	.	gene_id "jcn_only_AD.1047"; transcript_id "jcn_only_AD.1047"; gene_name "CUFF.2354"; flanks "106185206-,106184862^"; structure "1^,2^"; splice_chain "106185206^,106185168^";
chrX	juncbase	cassette	53571990	53570929	.	-	.	gene_id "cassette.491"; transcript_id "cassette.491"; gene_name "CUFF.2343"; flanks "53571990-,53570929^"; structure "0,1-2^"; splice_chain ",53571723-53571521^";
chrX	juncbase	jcn_only_AD	47039436	47039611	.	+	.	gene_id "jcn_only_AD.1048"; transcript_id "jcn_only_AD.1048"; gene_name "CUFF.2340"; flanks "47039436-,47039611^"; structure "1^,2^"; splice_chain "47039436^,47039439^";
chrX	juncbase	intron_retention	19933057	19932544	.	-	.	gene_id "intron_retention.729"; transcript_id "intron_retention.729"; gene_name "CUFF.2328"; flanks "19933057-,19932544^"; structure "0,1^2-"; splice_chain ",19933057^19932544-";
chrX	juncbase	intron_retention	9000171	8998401	.	-	.	gene_id "intron_retention.730"; transcript_id "intron_retention.730"; gene_name "CUFF.2308"; flanks "9000171-,8998401^"; structure "0,1^2-"; splice_chain ",9000171^8998401-";
chrX	juncbase	jcn_only_AD	148863658	148867664	.	+	.	gene_id "jcn_only_AD.1049"; transcript_id "jcn_only_AD.1049"; gene_name "CUFF.2379"; flanks "148863658-,148867664^"; structure "1^,2^"; splice_chain "148863658^,148867505^";
chrX	juncbase	jcn_only_AD	148863690	148867664	.	+	.	gene_id "jcn_only_AD.1050"; transcript_id "jcn_only_AD.1050"; gene_name "CUFF.2379"; flanks "148863690-,148867664^"; structure "1^,2^"; splice_chain "148863690^,148867505^";
chrX	juncbase	alternative_donor	153238311	153247301	.	+	.	gene_id "alternative_donor.872"; transcript_id "alternative_donor.872"; gene_name "CUFF.2383"; flanks "153238311-,153247301^"; structure "1^,2^"; splice_chain "153238311^,153238337^";
chrX	juncbase	alternative_donor	153246074	153247301	.	+	.	gene_id "alternative_donor.873"; transcript_id "alternative_donor.873"; gene_name "CUFF.2383"; flanks "153246074-,153247301^"; structure "1^,2^"; splice_chain "153238337^,153246074^";
chrX	juncbase	intron_retention	15349712	15343274	.	-	.	gene_id "intron_retention.731"; transcript_id "intron_retention.731"; gene_name "CUFF.2319"; flanks "15349712-,15343274^"; structure "0,1^2-"; splice_chain ",15349712^15343274-";
chrX	juncbase	intron_retention	24382348	24382541	.	+	.	gene_id "intron_retention.732"; transcript_id "intron_retention.732"; gene_name "CUFF.2332"; flanks "24382348-,24382541^"; structure "0,1^2-"; splice_chain ",24382348^24382541-";
chrX	juncbase	alternative_acceptor	114536688	114540770	.	+	.	gene_id "alternative_acceptor.609"; transcript_id "alternative_acceptor.609"; gene_name "CUFF.2356"; flanks "114536688-,114540770^"; structure "1-,2-"; splice_chain "114537865-,114540770-";
chrX	juncbase	jcn_only_AD	19955623	19954016	.	-	.	gene_id "jcn_only_AD.1051"; transcript_id "jcn_only_AD.1051"; gene_name "CUFF.2328"; flanks "19955623-,19954016^"; structure "1^,2^"; splice_chain "19955623^,19955536^";
chrX	juncbase	intron_retention	53564517	53563628	.	-	.	gene_id "intron_retention.733"; transcript_id "intron_retention.733"; gene_name "CUFF.2343"; flanks "53564517-,53563628^"; structure "0,1^2-"; splice_chain ",53564517^53563628-";
chrX	juncbase	intron_retention	13794357	13791149	.	-	.	gene_id "intron_retention.734"; transcript_id "intron_retention.734"; gene_name "CUFF.2313"; flanks "13794357-,13791149^"; structure "0,1^2-"; splice_chain ",13794357^13791149-";
chrX	juncbase	jcn_only_AD	153238337	153247301	.	+	.	gene_id "jcn_only_AD.1052"; transcript_id "jcn_only_AD.1052"; gene_name "CUFF.2383"; flanks "153238337-,153247301^"; structure "1^,2^"; splice_chain "153238311^,153238337^";
chrX	juncbase	jcn_only_AD	153246074	153247301	.	+	.	gene_id "jcn_only_AD.1053"; transcript_id "jcn_only_AD.1053"; gene_name "CUFF.2383"; flanks "153246074-,153247301^"; structure "1^,2^"; splice_chain "153238311^,153246074^";
chrX	juncbase	cassette	78003531	78005671	.	+	.	gene_id "cassette.492"; transcript_id "cassette.492"; gene_name "CUFF.2346"; flanks "78003531-,78005671^"; structure "0,1-2^"; splice_chain ",78004460-78004727^";
chrX	juncbase	alternative_donor	19953927	19948058	.	-	.	gene_id "alternative_donor.874"; transcript_id "alternative_donor.874"; gene_name "CUFF.2328,CUFF.2329"; flanks "19953927-,19948058^"; structure "1^,2^"; splice_chain "19953927^,19953476^";
chrX	juncbase	alternative_donor	107335066	107369307	.	+	.	gene_id "alternative_donor.875"; transcript_id "alternative_donor.875"; gene_name "CUFF.2355"; flanks "107335066-,107369307^"; structure "1^,2^"; splice_chain "107335066^,107335109^";
chrX	juncbase	jcn_only_AD	107335066	107369307	.	+	.	gene_id "jcn_only_AD.1054"; transcript_id "jcn_only_AD.1054"; gene_name "CUFF.2355"; flanks "107335066-,107369307^"; structure "1^,2^"; splice_chain "107335066^,107335109^";
chrX	juncbase	alternative_donor	13801484	13798108	.	-	.	gene_id "alternative_donor.876"; transcript_id "alternative_donor.876"; gene_name "CUFF.2309,CUFF.2313"; flanks "13801484-,13798108^"; structure "1^,2^"; splice_chain "13801484^,13799034^";
chrX	juncbase	jcn_only_AA	85219057	85302488	.	-	.	gene_id "jcn_only_AA.809"; transcript_id "jcn_only_AA.809"; gene_name "CUFF.2347"; flanks "85219057-,85302488^"; structure "1-,2-"; splice_chain "85282561-,85219057-";
chrX	juncbase	jcn_only_AD	133594368	133607389	.	+	.	gene_id "jcn_only_AD.1055"; transcript_id "jcn_only_AD.1055"; gene_name "CUFF.2370"; flanks "133594368-,133607389^"; structure "1^,2^"; splice_chain "133594368^,133594565^";
chrX	juncbase	jcn_only_AA	119312411	119378619	.	-	.	gene_id "jcn_only_AA.810"; transcript_id "jcn_only_AA.810"; gene_name "CUFF.2363"; flanks "119312411-,119378619^"; structure "1-,2-"; splice_chain "119374208-,119312411-";
chrX	juncbase	jcn_only_AA	119355497	119378619	.	-	.	gene_id "jcn_only_AA.811"; transcript_id "jcn_only_AA.811"; gene_name "CUFF.2363"; flanks "119355497-,119378619^"; structure "1-,2-"; splice_chain "119374208-,119355497-";
chrX	juncbase	jcn_only_AA	119377886	119378619	.	-	.	gene_id "jcn_only_AA.812"; transcript_id "jcn_only_AA.812"; gene_name "CUFF.2363"; flanks "119377886-,119378619^"; structure "1-,2-"; splice_chain "119377886-,119374208-";
chrX	juncbase	jcn_only_AA	119271099	119378619	.	-	.	gene_id "jcn_only_AA.813"; transcript_id "jcn_only_AA.813"; gene_name "CUFF.2363"; flanks "119271099-,119378619^"; structure "1-,2-"; splice_chain "119374208-,119271099-";
chrX	juncbase	alternative_acceptor	119312411	119378619	.	-	.	gene_id "alternative_acceptor.610"; transcript_id "alternative_acceptor.610"; gene_name "CUFF.2363"; flanks "119312411-,119378619^"; structure "1-,2-"; splice_chain "119312411-,119271099-";
chrX	juncbase	alternative_acceptor	119355497	119378619	.	-	.	gene_id "alternative_acceptor.611"; transcript_id "alternative_acceptor.611"; gene_name "CUFF.2363"; flanks "119355497-,119378619^"; structure "1-,2-"; splice_chain "119355497-,119271099-";
chrX	juncbase	alternative_acceptor	119377886	119378619	.	-	.	gene_id "alternative_acceptor.612"; transcript_id "alternative_acceptor.612"; gene_name "CUFF.2363"; flanks "119377886-,119378619^"; structure "1-,2-"; splice_chain "119377886-,119271099-";
chrX	juncbase	alternative_acceptor	119374208	119378619	.	-	.	gene_id "alternative_acceptor.613"; transcript_id "alternative_acceptor.613"; gene_name "CUFF.2363"; flanks "119374208-,119378619^"; structure "1-,2-"; splice_chain "119374208-,119271099-";
chrX	juncbase	cassette	47028897	47032527	.	+	.	gene_id "cassette.493"; transcript_id "cassette.493"; gene_name "CUFF.2340"; flanks "47028897-,47032527^"; structure "0,1-2^"; splice_chain ",47030427-47030657^";
chrX	juncbase	intron_retention	133594368	133607389	.	+	.	gene_id "intron_retention.735"; transcript_id "intron_retention.735"; gene_name "CUFF.2370"; flanks "133594368-,133607389^"; structure "0,1^2-"; splice_chain ",133594368^133607389-";
chrX	juncbase	alternative_acceptor	9050776	9130838	.	-	.	gene_id "alternative_acceptor.614"; transcript_id "alternative_acceptor.614"; gene_name "CUFF.2308"; flanks "9050776-,9130838^"; structure "1-,2-"; splice_chain "9130354-,9050776-";
chrX	juncbase	cassette	47038894	47039279	.	+	.	gene_id "cassette.494"; transcript_id "cassette.494"; gene_name "CUFF.2340"; flanks "47038894-,47039279^"; structure "0,1-2^"; splice_chain ",47039083-47039180^";
chrX	juncbase	alternative_donor	85302488	85282561	.	-	.	gene_id "alternative_donor.877"; transcript_id "alternative_donor.877"; gene_name "CUFF.2347"; flanks "85302488-,85282561^"; structure "1^,2^"; splice_chain "85302488^,85302251^";
chrX	juncbase	alternative_donor	9131118	9130945	.	-	.	gene_id "alternative_donor.878"; transcript_id "alternative_donor.878"; gene_name ""; flanks "9131118-,9130945^"; structure "1^,2^"; splice_chain "9132574^,9131118^";
chrX	juncbase	alternative_donor	9132334	9130945	.	-	.	gene_id "alternative_donor.879"; transcript_id "alternative_donor.879"; gene_name ""; flanks "9132334-,9130945^"; structure "1^,2^"; splice_chain "9132574^,9132334^";
chrX	juncbase	alternative_donor	148867505	148867664	.	+	.	gene_id "alternative_donor.880"; transcript_id "alternative_donor.880"; gene_name "CUFF.2379"; flanks "148867505-,148867664^"; structure "1^,2^"; splice_chain "148863658^,148867505^";
chrX	juncbase	alternative_donor	148863690	148867664	.	+	.	gene_id "alternative_donor.881"; transcript_id "alternative_donor.881"; gene_name "CUFF.2379"; flanks "148863690-,148867664^"; structure "1^,2^"; splice_chain "148863658^,148863690^";
chrX	juncbase	cassette	15349712	15343274	.	-	.	gene_id "cassette.495"; transcript_id "cassette.495"; gene_name "CUFF.2319"; flanks "15349712-,15343274^"; structure "0,1-2^"; splice_chain ",15344168-15344036^";
chrX	juncbase	intron_retention	153608379	153608594	.	+	.	gene_id "intron_retention.736"; transcript_id "intron_retention.736"; gene_name "CUFF.2384"; flanks "153608379-,153608594^"; structure "0,1^2-"; splice_chain ",153608379^153608594-";
chrX	juncbase	alternative_acceptor	148863690	148867664	.	+	.	gene_id "alternative_acceptor.615"; transcript_id "alternative_acceptor.615"; gene_name ""; flanks "148863690-,148867664^"; structure "1-,2-"; splice_chain "148867419-,148867664-";
chrX	juncbase	jcn_only_AD	53570847	53569500	.	-	.	gene_id "jcn_only_AD.1056"; transcript_id "jcn_only_AD.1056"; gene_name "CUFF.2329,CUFF.2343"; flanks "53570847-,53569500^"; structure "1^,2^"; splice_chain "53570847^,53570802^";
chrX	juncbase	intron_retention	106185206	106184862	.	-	.	gene_id "intron_retention.737"; transcript_id "intron_retention.737"; gene_name "CUFF.2354"; flanks "106185206-,106184862^"; structure "0,1^2-"; splice_chain ",106185206^106184862-";
chrX	juncbase	cassette	107369417	107374490	.	+	.	gene_id "cassette.496"; transcript_id "cassette.496"; gene_name "CUFF.2355"; flanks "107369417-,107374490^"; structure "0,1-2^"; splice_chain ",107372011-107372082^";
chrX	juncbase	jcn_only_AA	19948772	19955623	.	-	.	gene_id "jcn_only_AA.814"; transcript_id "jcn_only_AA.814"; gene_name "CUFF.2328"; flanks "19948772-,19955623^"; structure "1-,2-"; splice_chain "19954016-,19948772-";
chrX	juncbase	jcn_only_AD	148863690	148867419	.	+	.	gene_id "jcn_only_AD.1057"; transcript_id "jcn_only_AD.1057"; gene_name ""; flanks "148863690-,148867419^"; structure "1^,2^"; splice_chain "148863690^,148864249^";
chrX	juncbase	jcn_only_AA	119312411	119378619	.	-	.	gene_id "jcn_only_AA.815"; transcript_id "jcn_only_AA.815"; gene_name "CUFF.2363"; flanks "119312411-,119378619^"; structure "1-,2-"; splice_chain "119355497-,119312411-";
chrX	juncbase	jcn_only_AA	119377886	119378619	.	-	.	gene_id "jcn_only_AA.816"; transcript_id "jcn_only_AA.816"; gene_name "CUFF.2363"; flanks "119377886-,119378619^"; structure "1-,2-"; splice_chain "119377886-,119355497-";
chrX	juncbase	jcn_only_AA	119271099	119378619	.	-	.	gene_id "jcn_only_AA.817"; transcript_id "jcn_only_AA.817"; gene_name "CUFF.2363"; flanks "119271099-,119378619^"; structure "1-,2-"; splice_chain "119355497-,119271099-";
chrX	juncbase	jcn_only_AA	119374208	119378619	.	-	.	gene_id "jcn_only_AA.818"; transcript_id "jcn_only_AA.818"; gene_name "CUFF.2363"; flanks "119374208-,119378619^"; structure "1-,2-"; splice_chain "119374208-,119355497-";
chrX	juncbase	jcn_only_AA	20183079	20185707	.	-	.	gene_id "jcn_only_AA.819"; transcript_id "jcn_only_AA.819"; gene_name "CUFF.2329"; flanks "20183079-,20185707^"; structure "1-,2-"; splice_chain "20183178-,20183079-";
chrX	juncbase	jcn_only_AD	53654361	53652219	.	-	.	gene_id "jcn_only_AD.1058"; transcript_id "jcn_only_AD.1058"; gene_name ""; flanks "53654361-,53652219^"; structure "1^,2^"; splice_chain "53654361^,53652747^";
chrX	juncbase	jcn_only_AD	45129986	45184738	.	+	.	gene_id "jcn_only_AD.1059"; transcript_id "jcn_only_AD.1059"; gene_name "CUFF.2337"; flanks "45129986-,45184738^"; structure "1^,2^"; splice_chain "45129986^,45184463^";
chrX	juncbase	jcn_only_AD	134193764	134254455	.	+	.	gene_id "jcn_only_AD.1060"; transcript_id "jcn_only_AD.1060"; gene_name "CUFF.2373"; flanks "134193764-,134254455^"; structure "1^,2^"; splice_chain "134193764^,134250852^";
chrX	juncbase	jcn_only_AD	107369417	107372011	.	+	.	gene_id "jcn_only_AD.1061"; transcript_id "jcn_only_AD.1061"; gene_name "CUFF.2355"; flanks "107369417-,107372011^"; structure "1^,2^"; splice_chain "107369417^,107370324^";
chrX	juncbase	jcn_only_AD	153607897	153608050	.	+	.	gene_id "jcn_only_AD.1062"; transcript_id "jcn_only_AD.1062"; gene_name "CUFF.2384"; flanks "153607897-,153608050^"; structure "1^,2^"; splice_chain "153607897^,153607926^";
chrX	juncbase	intron_retention	9001000	9000502	.	-	.	gene_id "intron_retention.738"; transcript_id "intron_retention.738"; gene_name "CUFF.2308"; flanks "9001000-,9000502^"; structure "0,1^2-"; splice_chain ",9001000^9000502-";
chrX	juncbase	alternative_donor	153607897	153608050	.	+	.	gene_id "alternative_donor.882"; transcript_id "alternative_donor.882"; gene_name "CUFF.2384"; flanks "153607897-,153608050^"; structure "1^,2^"; splice_chain "153607897^,153607926^";
chrX	juncbase	cassette	13834963	13803927	.	-	.	gene_id "cassette.497"; transcript_id "cassette.497"; gene_name "CUFF.2313"; flanks "13834963-,13803927^"; structure "0,1-2^"; splice_chain ",13825888-13825769^";
chrX	juncbase	jcn_only_AD	106235518	106224707	.	-	.	gene_id "jcn_only_AD.1063"; transcript_id "jcn_only_AD.1063"; gene_name "CUFF.2354"; flanks "106235518-,106224707^"; structure "1^,2^"; splice_chain "106235518^,106228326^";
chrX	juncbase	intron_retention	13835377	13835314	.	-	.	gene_id "intron_retention.739"; transcript_id "intron_retention.739"; gene_name ""; flanks "13835377-,13835314^"; structure "0,1^2-"; splice_chain ",13835377^13835314-";
chrX	juncbase	alternative_donor	134193764	134254455	.	+	.	gene_id "alternative_donor.883"; transcript_id "alternative_donor.883"; gene_name "CUFF.2373"; flanks "134193764-,134254455^"; structure "1^,2^"; splice_chain "134193764^,134250852^";
chrX	juncbase	intron_retention	53658519	53658434	.	-	.	gene_id "intron_retention.740"; transcript_id "intron_retention.740"; gene_name ""; flanks "53658519-,53658434^"; structure "0,1^2-"; splice_chain ",53658519^53658434-";
chrX	juncbase	jcn_only_AD	148867505	148867664	.	+	.	gene_id "jcn_only_AD.1064"; transcript_id "jcn_only_AD.1064"; gene_name "CUFF.2379"; flanks "148867505-,148867664^"; structure "1^,2^"; splice_chain "148863658^,148867505^";
chrX	juncbase	jcn_only_AD	148863690	148867664	.	+	.	gene_id "jcn_only_AD.1065"; transcript_id "jcn_only_AD.1065"; gene_name "CUFF.2379"; flanks "148863690-,148867664^"; structure "1^,2^"; splice_chain "148863658^,148863690^";
chrX	juncbase	jcn_only_AA	148863690	148867664	.	+	.	gene_id "jcn_only_AA.820"; transcript_id "jcn_only_AA.820"; gene_name ""; flanks "148863690-,148867664^"; structure "1-,2-"; splice_chain "148867419-,148867664-";
chrX	juncbase	jcn_only_AA	10417656	10422910	.	-	.	gene_id "jcn_only_AA.821"; transcript_id "jcn_only_AA.821"; gene_name "CUFF.2309"; flanks "10417656-,10422910^"; structure "1-,2-"; splice_chain "10417756-,10417656-";
chrX	juncbase	jcn_only_AD	9132574	9130945	.	-	.	gene_id "jcn_only_AD.1066"; transcript_id "jcn_only_AD.1066"; gene_name "CUFF.2308"; flanks "9132574-,9130945^"; structure "1^,2^"; splice_chain "9132574^,9131118^";
chrX	juncbase	jcn_only_AD	9132334	9130945	.	-	.	gene_id "jcn_only_AD.1067"; transcript_id "jcn_only_AD.1067"; gene_name "CUFF.2308"; flanks "9132334-,9130945^"; structure "1^,2^"; splice_chain "9132334^,9131118^";
chrX	juncbase	alternative_acceptor	20190986	20193282	.	-	.	gene_id "alternative_acceptor.616"; transcript_id "alternative_acceptor.616"; gene_name "CUFF.2329"; flanks "20190986-,20193282^"; structure "1-,2-"; splice_chain "20190989-,20190986-";
chrX	juncbase	jcn_only_AA	47035985	47040614	.	+	.	gene_id "jcn_only_AA.822"; transcript_id "jcn_only_AA.822"; gene_name ""; flanks "47035985-,47040614^"; structure "1-,2-"; splice_chain "47038502-,47040614-";
chrX	juncbase	jcn_only_AD	13801484	13798108	.	-	.	gene_id "jcn_only_AD.1068"; transcript_id "jcn_only_AD.1068"; gene_name "CUFF.2309,CUFF.2313"; flanks "13801484-,13798108^"; structure "1^,2^"; splice_chain "13801484^,13799034^";
chrX	juncbase	alternative_acceptor	45184846	45192755	.	+	.	gene_id "alternative_acceptor.617"; transcript_id "alternative_acceptor.617"; gene_name "CUFF.2337"; flanks "45184846-,45192755^"; structure "1-,2-"; splice_chain "45192519-,45192755-";
chrX	juncbase	cassette	19947903	19935452	.	-	.	gene_id "cassette.498"; transcript_id "cassette.498"; gene_name "CUFF.2328"; flanks "19947903-,19935452^"; structure "0,1-2^"; splice_chain ",19941525-19941276^";
chrX	juncbase	intron_retention	153607897	153608050	.	+	.	gene_id "intron_retention.741"; transcript_id "intron_retention.741"; gene_name ""; flanks "153607897-,153608050^"; structure "0,1^2-"; splice_chain ",153607897^153608050-";
chrX	juncbase	alternative_donor	106185206	106184862	.	-	.	gene_id "alternative_donor.884"; transcript_id "alternative_donor.884"; gene_name "CUFF.2354"; flanks "106185206-,106184862^"; structure "1^,2^"; splice_chain "106185206^,106185168^";
chrX	juncbase	alternative_acceptor	20252932	20285157	.	-	.	gene_id "alternative_acceptor.618"; transcript_id "alternative_acceptor.618"; gene_name "CUFF.2329"; flanks "20252932-,20285157^"; structure "1-,2-"; splice_chain "20258787-,20252932-";
chrX	juncbase	alternative_acceptor	19948772	19955623	.	-	.	gene_id "alternative_acceptor.619"; transcript_id "alternative_acceptor.619"; gene_name "CUFF.2328"; flanks "19948772-,19955623^"; structure "1-,2-"; splice_chain "19954016-,19948772-";
chrX	juncbase	intron_retention	152989942	152988743	.	-	.	gene_id "intron_retention.742"; transcript_id "intron_retention.742"; gene_name ""; flanks "152989942-,152988743^"; structure "0,1^2-"; splice_chain ",152989942^152988743-";
chrX	juncbase	alternative_donor	107395088	107396209	.	+	.	gene_id "alternative_donor.885"; transcript_id "alternative_donor.885"; gene_name "CUFF.2355"; flanks "107395088-,107396209^"; structure "1^,2^"; splice_chain "107395088^,107395235^";
chrX	juncbase	alternative_donor	9050620	9001116	.	-	.	gene_id "alternative_donor.886"; transcript_id "alternative_donor.886"; gene_name "CUFF.2308"; flanks "9050620-,9001116^"; structure "1^,2^"; splice_chain "9050620^,9001893^";
chrX	juncbase	jcn_only_AD	9132574	9130945	.	-	.	gene_id "jcn_only_AD.1069"; transcript_id "jcn_only_AD.1069"; gene_name "CUFF.2308"; flanks "9132574-,9130945^"; structure "1^,2^"; splice_chain "9132574^,9132334^";
chrX	juncbase	jcn_only_AD	9131118	9130945	.	-	.	gene_id "jcn_only_AD.1070"; transcript_id "jcn_only_AD.1070"; gene_name "CUFF.2308"; flanks "9131118-,9130945^"; structure "1^,2^"; splice_chain "9132334^,9131118^";
chrX	juncbase	alternative_donor	19955623	19954016	.	-	.	gene_id "alternative_donor.887"; transcript_id "alternative_donor.887"; gene_name "CUFF.2328"; flanks "19955623-,19954016^"; structure "1^,2^"; splice_chain "19955623^,19955536^";
chrX	juncbase	alternative_acceptor	142113878	142121814	.	+	.	gene_id "alternative_acceptor.620"; transcript_id "alternative_acceptor.620"; gene_name "CUFF.2340,CUFF.2376"; flanks "142113878-,142121814^"; structure "1-,2-"; splice_chain "142121811-,142121814-";
chrX	juncbase	jcn_only_AD	20284682	20258723	.	-	.	gene_id "jcn_only_AD.1071"; transcript_id "jcn_only_AD.1071"; gene_name ""; flanks "20284682-,20258723^"; structure "1^,2^"; splice_chain "20284682^,20259711^";
chrX	juncbase	intron_retention	85282495	85236813	.	-	.	gene_id "intron_retention.743"; transcript_id "intron_retention.743"; gene_name "CUFF.2347"; flanks "85282495-,85236813^"; structure "0,1^2-"; splice_chain ",85282495^85236813-";
chrX	juncbase	jcn_only_AD	153238311	153247301	.	+	.	gene_id "jcn_only_AD.1072"; transcript_id "jcn_only_AD.1072"; gene_name "CUFF.2383"; flanks "153238311-,153247301^"; structure "1^,2^"; splice_chain "153238311^,153238337^";
chrX	juncbase	jcn_only_AD	153246074	153247301	.	+	.	gene_id "jcn_only_AD.1073"; transcript_id "jcn_only_AD.1073"; gene_name "CUFF.2383"; flanks "153246074-,153247301^"; structure "1^,2^"; splice_chain "153238337^,153246074^";
chrX	juncbase	jcn_only_AD	46387785	46382560	.	-	.	gene_id "jcn_only_AD.1074"; transcript_id "jcn_only_AD.1074"; gene_name "CUFF.2308,CUFF.2339"; flanks "46387785-,46382560^"; structure "1^,2^"; splice_chain "46387785^,46387770^";
chrX	juncbase	jcn_only_AD	47035985	47040614	.	+	.	gene_id "jcn_only_AD.1075"; transcript_id "jcn_only_AD.1075"; gene_name "CUFF.2340"; flanks "47035985-,47040614^"; structure "1^,2^"; splice_chain "47035985^,47039905^";
chrX	juncbase	intron_retention	46387785	46382560	.	-	.	gene_id "intron_retention.744"; transcript_id "intron_retention.744"; gene_name "CUFF.2339"; flanks "46387785-,46382560^"; structure "0,1^2-"; splice_chain ",46387785^46382560-";
chrX	juncbase	jcn_only_AD	107395088	107396209	.	+	.	gene_id "jcn_only_AD.1076"; transcript_id "jcn_only_AD.1076"; gene_name "CUFF.2355"; flanks "107395088-,107396209^"; structure "1^,2^"; splice_chain "107395088^,107395235^";
chrX	juncbase	jcn_only_AD	153238311	153247301	.	+	.	gene_id "jcn_only_AD.1077"; transcript_id "jcn_only_AD.1077"; gene_name "CUFF.2383"; flanks "153238311-,153247301^"; structure "1^,2^"; splice_chain "153238311^,153246074^";
chrX	juncbase	jcn_only_AD	153238337	153247301	.	+	.	gene_id "jcn_only_AD.1078"; transcript_id "jcn_only_AD.1078"; gene_name "CUFF.2383"; flanks "153238337-,153247301^"; structure "1^,2^"; splice_chain "153238337^,153246074^";
chrX	juncbase	jcn_only_AA	20252932	20285157	.	-	.	gene_id "jcn_only_AA.823"; transcript_id "jcn_only_AA.823"; gene_name "CUFF.2329"; flanks "20252932-,20285157^"; structure "1-,2-"; splice_chain "20258787-,20252932-";
chrX	juncbase	alternative_donor	53570847	53569500	.	-	.	gene_id "alternative_donor.888"; transcript_id "alternative_donor.888"; gene_name "CUFF.2329,CUFF.2343"; flanks "53570847-,53569500^"; structure "1^,2^"; splice_chain "53570847^,53570802^";
chrX	juncbase	cassette	114364718	114358565	.	-	.	gene_id "cassette.499"; transcript_id "cassette.499"; gene_name "CUFF.2357"; flanks "114364718-,114358565^"; structure "0,1-2^"; splice_chain ",114361456-114361406^";
chrX	juncbase	cassette	100182959	100170072	.	-	.	gene_id "cassette.500"; transcript_id "cassette.500"; gene_name "CUFF.2352"; flanks "100182959-,100170072^"; structure "0,1-2^"; splice_chain ",100178050-100177782^";
chrX	juncbase	intron_retention	19932469	19932386	.	-	.	gene_id "intron_retention.745"; transcript_id "intron_retention.745"; gene_name "CUFF.2328"; flanks "19932469-,19932386^"; structure "0,1^2-"; splice_chain ",19932469^19932386-";
chrX	juncbase	alternative_donor	106235518	106224707	.	-	.	gene_id "alternative_donor.889"; transcript_id "alternative_donor.889"; gene_name "CUFF.2354"; flanks "106235518-,106224707^"; structure "1^,2^"; splice_chain "106235518^,106228326^";
chrX	juncbase	alternative_donor	153238311	153247301	.	+	.	gene_id "alternative_donor.890"; transcript_id "alternative_donor.890"; gene_name "CUFF.2383"; flanks "153238311-,153247301^"; structure "1^,2^"; splice_chain "153238311^,153246074^";
chrX	juncbase	alternative_donor	153238337	153247301	.	+	.	gene_id "alternative_donor.891"; transcript_id "alternative_donor.891"; gene_name "CUFF.2383"; flanks "153238337-,153247301^"; structure "1^,2^"; splice_chain "153238337^,153246074^";
chrX	juncbase	alternative_donor	47039436	47039611	.	+	.	gene_id "alternative_donor.892"; transcript_id "alternative_donor.892"; gene_name "CUFF.2340"; flanks "47039436-,47039611^"; structure "1^,2^"; splice_chain "47039436^,47039439^";
chrX	juncbase	alternative_acceptor	119355497	119378619	.	-	.	gene_id "alternative_acceptor.621"; transcript_id "alternative_acceptor.621"; gene_name "CUFF.2363"; flanks "119355497-,119378619^"; structure "1-,2-"; splice_chain "119355497-,119312411-";
chrX	juncbase	alternative_acceptor	119377886	119378619	.	-	.	gene_id "alternative_acceptor.622"; transcript_id "alternative_acceptor.622"; gene_name "CUFF.2363"; flanks "119377886-,119378619^"; structure "1-,2-"; splice_chain "119377886-,119312411-";
chrX	juncbase	alternative_acceptor	119271099	119378619	.	-	.	gene_id "alternative_acceptor.623"; transcript_id "alternative_acceptor.623"; gene_name "CUFF.2363"; flanks "119271099-,119378619^"; structure "1-,2-"; splice_chain "119312411-,119271099-";
chrX	juncbase	alternative_acceptor	119374208	119378619	.	-	.	gene_id "alternative_acceptor.624"; transcript_id "alternative_acceptor.624"; gene_name "CUFF.2363"; flanks "119374208-,119378619^"; structure "1-,2-"; splice_chain "119374208-,119312411-";
chrX	juncbase	jcn_only_AA	142113878	142121814	.	+	.	gene_id "jcn_only_AA.824"; transcript_id "jcn_only_AA.824"; gene_name "CUFF.2340,CUFF.2376"; flanks "142113878-,142121814^"; structure "1-,2-"; splice_chain "142121811-,142121814-";
chrX	juncbase	intron_retention	107381114	107393382	.	+	.	gene_id "intron_retention.746"; transcript_id "intron_retention.746"; gene_name ""; flanks "107381114-,107393382^"; structure "0,1^2-"; splice_chain ",107381114^107393382-";
chrX	juncbase	jcn_only_AD	13834963	13825888	.	-	.	gene_id "jcn_only_AD.1079"; transcript_id "jcn_only_AD.1079"; gene_name "CUFF.2313"; flanks "13834963-,13825888^"; structure "1^,2^"; splice_chain "13834963^,13830990^";
chrX	juncbase	jcn_only_AA	85118099	85282495	.	-	.	gene_id "jcn_only_AA.825"; transcript_id "jcn_only_AA.825"; gene_name "CUFF.2347"; flanks "85118099-,85282495^"; structure "1-,2-"; splice_chain "85236813-,85118099-";
chrX	juncbase	jcn_only_AA	20190986	20193282	.	-	.	gene_id "jcn_only_AA.826"; transcript_id "jcn_only_AA.826"; gene_name "CUFF.2329"; flanks "20190986-,20193282^"; structure "1-,2-"; splice_chain "20190989-,20190986-";
chrX	juncbase	alternative_donor	20284682	20258723	.	-	.	gene_id "alternative_donor.893"; transcript_id "alternative_donor.893"; gene_name ""; flanks "20284682-,20258723^"; structure "1^,2^"; splice_chain "20284682^,20259711^";
chrX	juncbase	alternative_donor	13834963	13825888	.	-	.	gene_id "alternative_donor.894"; transcript_id "alternative_donor.894"; gene_name "CUFF.2313"; flanks "13834963-,13825888^"; structure "1^,2^"; splice_chain "13834963^,13830990^";
chrX	juncbase	cassette	15353623	15344168	.	-	.	gene_id "cassette.501"; transcript_id "cassette.501"; gene_name "CUFF.2319"; flanks "15353623-,15344168^"; structure "0,1-2^"; splice_chain ",15350114-15349712^";
chrX	juncbase	intron_retention	153607926	153608050	.	+	.	gene_id "intron_retention.747"; transcript_id "intron_retention.747"; gene_name "CUFF.2384"; flanks "153607926-,153608050^"; structure "0,1^2-"; splice_chain ",153607926^153608050-";
chrX	juncbase	jcn_only_AA	114536688	114540770	.	+	.	gene_id "jcn_only_AA.827"; transcript_id "jcn_only_AA.827"; gene_name "CUFF.2356"; flanks "114536688-,114540770^"; structure "1-,2-"; splice_chain "114537865-,114540770-";
chrX	juncbase	alternative_donor	9132574	9130945	.	-	.	gene_id "alternative_donor.895"; transcript_id "alternative_donor.895"; gene_name "CUFF.2308"; flanks "9132574-,9130945^"; structure "1^,2^"; splice_chain "9132574^,9131118^";
chrX	juncbase	alternative_donor	9132334	9130945	.	-	.	gene_id "alternative_donor.896"; transcript_id "alternative_donor.896"; gene_name "CUFF.2308"; flanks "9132334-,9130945^"; structure "1^,2^"; splice_chain "9132334^,9131118^";
chrX	juncbase	alternative_acceptor	10417656	10422910	.	-	.	gene_id "alternative_acceptor.625"; transcript_id "alternative_acceptor.625"; gene_name "CUFF.2309"; flanks "10417656-,10422910^"; structure "1-,2-"; splice_chain "10417756-,10417656-";
chrX	juncbase	cassette	15343142	15339894	.	-	.	gene_id "cassette.502"; transcript_id "cassette.502"; gene_name "CUFF.2319"; flanks "15343142-,15339894^"; structure "0,1-2^"; splice_chain ",15342993-15342787^";
chrX	juncbase	intron_retention	19932270	19931597	.	-	.	gene_id "intron_retention.748"; transcript_id "intron_retention.748"; gene_name "CUFF.2328"; flanks "19932270-,19931597^"; structure "0,1^2-"; splice_chain ",19932270^19931597-";
chrX	juncbase	cassette	46387770	46360770	.	-	.	gene_id "cassette.503"; transcript_id "cassette.503"; gene_name "CUFF.2339"; flanks "46387770-,46360770^"; structure "0,1-2^"; splice_chain ",46382560-46382372^";
chrX	juncbase	alternative_donor	46387785	46382560	.	-	.	gene_id "alternative_donor.897"; transcript_id "alternative_donor.897"; gene_name "CUFF.2308,CUFF.2339"; flanks "46387785-,46382560^"; structure "1^,2^"; splice_chain "46387785^,46387770^";
chrX	juncbase	alternative_donor	13803741	13801640	.	-	.	gene_id "alternative_donor.898"; transcript_id "alternative_donor.898"; gene_name "CUFF.2313"; flanks "13803741-,13801640^"; structure "1^,2^"; splice_chain "13803741^,13801898^";
chrX	juncbase	cassette	107381221	107393382	.	+	.	gene_id "cassette.504"; transcript_id "cassette.504"; gene_name "CUFF.2355"; flanks "107381221-,107393382^"; structure "0,1-2^"; splice_chain ",107381343-107381421^";
chrX	juncbase	intron_retention	152989789	152988743	.	-	.	gene_id "intron_retention.749"; transcript_id "intron_retention.749"; gene_name ""; flanks "152989789-,152988743^"; structure "0,1^2-"; splice_chain ",152989789^152988743-";
chrX	juncbase	jcn_only_AA	119312411	119378619	.	-	.	gene_id "jcn_only_AA.828"; transcript_id "jcn_only_AA.828"; gene_name "CUFF.2363"; flanks "119312411-,119378619^"; structure "1-,2-"; splice_chain "119377886-,119312411-";
chrX	juncbase	jcn_only_AA	119355497	119378619	.	-	.	gene_id "jcn_only_AA.829"; transcript_id "jcn_only_AA.829"; gene_name "CUFF.2363"; flanks "119355497-,119378619^"; structure "1-,2-"; splice_chain "119377886-,119355497-";
chrX	juncbase	jcn_only_AA	119271099	119378619	.	-	.	gene_id "jcn_only_AA.830"; transcript_id "jcn_only_AA.830"; gene_name "CUFF.2363"; flanks "119271099-,119378619^"; structure "1-,2-"; splice_chain "119377886-,119271099-";
chrX	juncbase	jcn_only_AA	119374208	119378619	.	-	.	gene_id "jcn_only_AA.831"; transcript_id "jcn_only_AA.831"; gene_name "CUFF.2363"; flanks "119374208-,119378619^"; structure "1-,2-"; splice_chain "119377886-,119374208-";
chrX	juncbase	jcn_only_AD	9131118	9130945	.	-	.	gene_id "jcn_only_AD.1080"; transcript_id "jcn_only_AD.1080"; gene_name ""; flanks "9131118-,9130945^"; structure "1^,2^"; splice_chain "9132574^,9131118^";
chrX	juncbase	jcn_only_AD	9132334	9130945	.	-	.	gene_id "jcn_only_AD.1081"; transcript_id "jcn_only_AD.1081"; gene_name ""; flanks "9132334-,9130945^"; structure "1^,2^"; splice_chain "9132574^,9132334^";
chrX	juncbase	intron_retention	107335066	107369307	.	+	.	gene_id "intron_retention.750"; transcript_id "intron_retention.750"; gene_name "CUFF.2355"; flanks "107335066-,107369307^"; structure "0,1^2-"; splice_chain ",107335066^107369307-";
chrX	juncbase	alternative_acceptor	20183079	20185707	.	-	.	gene_id "alternative_acceptor.626"; transcript_id "alternative_acceptor.626"; gene_name "CUFF.2329"; flanks "20183079-,20185707^"; structure "1-,2-"; splice_chain "20183178-,20183079-";
chrX	juncbase	alternative_acceptor	85118099	85282495	.	-	.	gene_id "alternative_acceptor.627"; transcript_id "alternative_acceptor.627"; gene_name "CUFF.2347"; flanks "85118099-,85282495^"; structure "1-,2-"; splice_chain "85236813-,85118099-";
chrX	juncbase	intron_retention	106185168	106184862	.	-	.	gene_id "intron_retention.751"; transcript_id "intron_retention.751"; gene_name "CUFF.2354"; flanks "106185168-,106184862^"; structure "0,1^2-"; splice_chain ",106185168^106184862-";
chrX	juncbase	alternative_donor	148863658	148867664	.	+	.	gene_id "alternative_donor.899"; transcript_id "alternative_donor.899"; gene_name "CUFF.2379"; flanks "148863658-,148867664^"; structure "1^,2^"; splice_chain "148863658^,148867505^";
chrX	juncbase	alternative_donor	148863690	148867664	.	+	.	gene_id "alternative_donor.900"; transcript_id "alternative_donor.900"; gene_name "CUFF.2379"; flanks "148863690-,148867664^"; structure "1^,2^"; splice_chain "148863690^,148867505^";
chrX	juncbase	intron_retention	19933763	19933167	.	-	.	gene_id "intron_retention.752"; transcript_id "intron_retention.752"; gene_name "CUFF.2328"; flanks "19933763-,19933167^"; structure "0,1^2-"; splice_chain ",19933763^19933167-";
chrX	juncbase	jcn_only_AD	13803741	13801640	.	-	.	gene_id "jcn_only_AD.1082"; transcript_id "jcn_only_AD.1082"; gene_name "CUFF.2313"; flanks "13803741-,13801640^"; structure "1^,2^"; splice_chain "13803741^,13801898^";
chrX	juncbase	intron_retention	53570847	53569500	.	-	.	gene_id "intron_retention.753"; transcript_id "intron_retention.753"; gene_name "CUFF.2343"; flanks "53570847-,53569500^"; structure "0,1^2-"; splice_chain ",53570847^53569500-";
chrX	juncbase	alternative_donor	114536688	114540770	.	+	.	gene_id "alternative_donor.901"; transcript_id "alternative_donor.901"; gene_name "CUFF.2356"; flanks "114536688-,114540770^"; structure "1^,2^"; splice_chain "114536688^,114537983^";
chrX	juncbase	alternative_acceptor	119312411	119378619	.	-	.	gene_id "alternative_acceptor.628"; transcript_id "alternative_acceptor.628"; gene_name "CUFF.2363"; flanks "119312411-,119378619^"; structure "1-,2-"; splice_chain "119355497-,119312411-";
chrX	juncbase	alternative_acceptor	119377886	119378619	.	-	.	gene_id "alternative_acceptor.629"; transcript_id "alternative_acceptor.629"; gene_name "CUFF.2363"; flanks "119377886-,119378619^"; structure "1-,2-"; splice_chain "119377886-,119355497-";
chrX	juncbase	alternative_acceptor	119271099	119378619	.	-	.	gene_id "alternative_acceptor.630"; transcript_id "alternative_acceptor.630"; gene_name "CUFF.2363"; flanks "119271099-,119378619^"; structure "1-,2-"; splice_chain "119355497-,119271099-";
chrX	juncbase	alternative_acceptor	119374208	119378619	.	-	.	gene_id "alternative_acceptor.631"; transcript_id "alternative_acceptor.631"; gene_name "CUFF.2363"; flanks "119374208-,119378619^"; structure "1-,2-"; splice_chain "119374208-,119355497-";
chrX	juncbase	cassette	78005720	78006707	.	+	.	gene_id "cassette.505"; transcript_id "cassette.505"; gene_name "CUFF.2346"; flanks "78005720-,78006707^"; structure "0,1-2^"; splice_chain ",78006227-78006289^";
chrX	juncbase	alternative_acceptor	13791149	13794357	.	-	.	gene_id "alternative_acceptor.632"; transcript_id "alternative_acceptor.632"; gene_name "CUFF.2313"; flanks "13791149-,13794357^"; structure "1-,2-"; splice_chain "13792743-,13791149-";
chrX	juncbase	jcn_only_AA	45184846	45192755	.	+	.	gene_id "jcn_only_AA.832"; transcript_id "jcn_only_AA.832"; gene_name "CUFF.2337"; flanks "45184846-,45192755^"; structure "1-,2-"; splice_chain "45192519-,45192755-";
chrX	juncbase	intron_retention	85282495	85118099	.	-	.	gene_id "intron_retention.754"; transcript_id "intron_retention.754"; gene_name ""; flanks "85282495-,85118099^"; structure "0,1^2-"; splice_chain ",85282495^85118099-";
chrX	juncbase	jcn_only_AA	53652219	53654361	.	-	.	gene_id "jcn_only_AA.833"; transcript_id "jcn_only_AA.833"; gene_name ""; flanks "53652219-,53654361^"; structure "1-,2-"; splice_chain "53652989-,53652219-";
chrX	juncbase	jcn_only_AD	85302488	85282561	.	-	.	gene_id "jcn_only_AD.1083"; transcript_id "jcn_only_AD.1083"; gene_name "CUFF.2347"; flanks "85302488-,85282561^"; structure "1^,2^"; splice_chain "85302488^,85302251^";
chrX	juncbase	alternative_donor	133594368	133607389	.	+	.	gene_id "alternative_donor.902"; transcript_id "alternative_donor.902"; gene_name "CUFF.2370"; flanks "133594368-,133607389^"; structure "1^,2^"; splice_chain "133594368^,133594565^";
chrX	juncbase	intron_retention	152989471	152988743	.	-	.	gene_id "intron_retention.755"; transcript_id "intron_retention.755"; gene_name ""; flanks "152989471-,152988743^"; structure "0,1^2-"; splice_chain ",152989471^152988743-";
chrX	juncbase	jcn_only_AD	19953927	19948058	.	-	.	gene_id "jcn_only_AD.1084"; transcript_id "jcn_only_AD.1084"; gene_name "CUFF.2328,CUFF.2329"; flanks "19953927-,19948058^"; structure "1^,2^"; splice_chain "19953927^,19953476^";
chrX	juncbase	alternative_donor	9132574	9130945	.	-	.	gene_id "alternative_donor.903"; transcript_id "alternative_donor.903"; gene_name "CUFF.2308"; flanks "9132574-,9130945^"; structure "1^,2^"; splice_chain "9132574^,9132334^";
chrX	juncbase	alternative_donor	9131118	9130945	.	-	.	gene_id "alternative_donor.904"; transcript_id "alternative_donor.904"; gene_name "CUFF.2308"; flanks "9131118-,9130945^"; structure "1^,2^"; splice_chain "9132334^,9131118^";
chrX	juncbase	intron_retention	153609162	153609242	.	+	.	gene_id "intron_retention.756"; transcript_id "intron_retention.756"; gene_name "CUFF.2384"; flanks "153609162-,153609242^"; structure "0,1^2-"; splice_chain ",153609162^153609242-";
chrX	juncbase	jcn_only_AA	9050776	9130838	.	-	.	gene_id "jcn_only_AA.834"; transcript_id "jcn_only_AA.834"; gene_name "CUFF.2308"; flanks "9050776-,9130838^"; structure "1-,2-"; splice_chain "9130354-,9050776-";
chrX	juncbase	intron_retention	46387770	46382560	.	-	.	gene_id "intron_retention.757"; transcript_id "intron_retention.757"; gene_name "CUFF.2339"; flanks "46387770-,46382560^"; structure "0,1^2-"; splice_chain ",46387770^46382560-";
chrX	juncbase	cassette	153607926	153608302	.	+	.	gene_id "cassette.506"; transcript_id "cassette.506"; gene_name "CUFF.2384"; flanks "153607926-,153608302^"; structure "0,1-2^"; splice_chain ",153608050-153608154^";
chrX	juncbase	jcn_only_AD	114536688	114540770	.	+	.	gene_id "jcn_only_AD.1085"; transcript_id "jcn_only_AD.1085"; gene_name "CUFF.2356"; flanks "114536688-,114540770^"; structure "1^,2^"; splice_chain "114536688^,114537983^";
chrX	juncbase	jcn_only_AD	9050620	9001116	.	-	.	gene_id "jcn_only_AD.1086"; transcript_id "jcn_only_AD.1086"; gene_name "CUFF.2308"; flanks "9050620-,9001116^"; structure "1^,2^"; splice_chain "9050620^,9001893^";
chrX	juncbase	alternative_donor	148867505	148867664	.	+	.	gene_id "alternative_donor.905"; transcript_id "alternative_donor.905"; gene_name "CUFF.2379"; flanks "148867505-,148867664^"; structure "1^,2^"; splice_chain "148863690^,148867505^";
chrX	juncbase	alternative_donor	148863658	148867664	.	+	.	gene_id "alternative_donor.906"; transcript_id "alternative_donor.906"; gene_name "CUFF.2379"; flanks "148863658-,148867664^"; structure "1^,2^"; splice_chain "148863658^,148863690^";
chrX	juncbase	intron_retention	103357937	103358125	.	+	.	gene_id "intron_retention.758"; transcript_id "intron_retention.758"; gene_name ""; flanks "103357937-,103358125^"; structure "0,1^2-"; splice_chain ",103357937^103358125-";
chrX	juncbase	jcn_only_AA	13791149	13794357	.	-	.	gene_id "jcn_only_AA.835"; transcript_id "jcn_only_AA.835"; gene_name "CUFF.2313"; flanks "13791149-,13794357^"; structure "1-,2-"; splice_chain "13792743-,13791149-";
chrX	juncbase	jcn_only_AA	119312411	119378619	.	-	.	gene_id "jcn_only_AA.836"; transcript_id "jcn_only_AA.836"; gene_name "CUFF.2363"; flanks "119312411-,119378619^"; structure "1-,2-"; splice_chain "119312411-,119271099-";
chrX	juncbase	jcn_only_AA	119355497	119378619	.	-	.	gene_id "jcn_only_AA.837"; transcript_id "jcn_only_AA.837"; gene_name "CUFF.2363"; flanks "119355497-,119378619^"; structure "1-,2-"; splice_chain "119355497-,119271099-";
chrX	juncbase	jcn_only_AA	119377886	119378619	.	-	.	gene_id "jcn_only_AA.838"; transcript_id "jcn_only_AA.838"; gene_name "CUFF.2363"; flanks "119377886-,119378619^"; structure "1-,2-"; splice_chain "119377886-,119271099-";
chrX	juncbase	jcn_only_AA	119374208	119378619	.	-	.	gene_id "jcn_only_AA.839"; transcript_id "jcn_only_AA.839"; gene_name "CUFF.2363"; flanks "119374208-,119378619^"; structure "1-,2-"; splice_chain "119374208-,119271099-";
chrX	juncbase	alternative_acceptor	119312411	119378619	.	-	.	gene_id "alternative_acceptor.633"; transcript_id "alternative_acceptor.633"; gene_name "CUFF.2363"; flanks "119312411-,119378619^"; structure "1-,2-"; splice_chain "119377886-,119312411-";
chrX	juncbase	alternative_acceptor	119355497	119378619	.	-	.	gene_id "alternative_acceptor.634"; transcript_id "alternative_acceptor.634"; gene_name "CUFF.2363"; flanks "119355497-,119378619^"; structure "1-,2-"; splice_chain "119377886-,119355497-";
chrX	juncbase	alternative_acceptor	119271099	119378619	.	-	.	gene_id "alternative_acceptor.635"; transcript_id "alternative_acceptor.635"; gene_name "CUFF.2363"; flanks "119271099-,119378619^"; structure "1-,2-"; splice_chain "119377886-,119271099-";
chrX	juncbase	alternative_acceptor	119374208	119378619	.	-	.	gene_id "alternative_acceptor.636"; transcript_id "alternative_acceptor.636"; gene_name "CUFF.2363"; flanks "119374208-,119378619^"; structure "1-,2-"; splice_chain "119377886-,119374208-";
chrX	juncbase	alternative_acceptor	119312411	119378619	.	-	.	gene_id "alternative_acceptor.637"; transcript_id "alternative_acceptor.637"; gene_name "CUFF.2363"; flanks "119312411-,119378619^"; structure "1-,2-"; splice_chain "119374208-,119312411-";
chrX	juncbase	alternative_acceptor	119355497	119378619	.	-	.	gene_id "alternative_acceptor.638"; transcript_id "alternative_acceptor.638"; gene_name "CUFF.2363"; flanks "119355497-,119378619^"; structure "1-,2-"; splice_chain "119374208-,119355497-";
chrX	juncbase	alternative_acceptor	119377886	119378619	.	-	.	gene_id "alternative_acceptor.639"; transcript_id "alternative_acceptor.639"; gene_name "CUFF.2363"; flanks "119377886-,119378619^"; structure "1-,2-"; splice_chain "119377886-,119374208-";
chrX	juncbase	alternative_acceptor	119271099	119378619	.	-	.	gene_id "alternative_acceptor.640"; transcript_id "alternative_acceptor.640"; gene_name "CUFF.2363"; flanks "119271099-,119378619^"; structure "1-,2-"; splice_chain "119374208-,119271099-";
chrX	juncbase	jcn_only_AA	119355497	119378619	.	-	.	gene_id "jcn_only_AA.840"; transcript_id "jcn_only_AA.840"; gene_name "CUFF.2363"; flanks "119355497-,119378619^"; structure "1-,2-"; splice_chain "119355497-,119312411-";
chrX	juncbase	jcn_only_AA	119377886	119378619	.	-	.	gene_id "jcn_only_AA.841"; transcript_id "jcn_only_AA.841"; gene_name "CUFF.2363"; flanks "119377886-,119378619^"; structure "1-,2-"; splice_chain "119377886-,119312411-";
chrX	juncbase	jcn_only_AA	119271099	119378619	.	-	.	gene_id "jcn_only_AA.842"; transcript_id "jcn_only_AA.842"; gene_name "CUFF.2363"; flanks "119271099-,119378619^"; structure "1-,2-"; splice_chain "119312411-,119271099-";
chrX	juncbase	jcn_only_AA	119374208	119378619	.	-	.	gene_id "jcn_only_AA.843"; transcript_id "jcn_only_AA.843"; gene_name "CUFF.2363"; flanks "119374208-,119378619^"; structure "1-,2-"; splice_chain "119374208-,119312411-";
chrX	juncbase	alternative_donor	153238337	153247301	.	+	.	gene_id "alternative_donor.907"; transcript_id "alternative_donor.907"; gene_name "CUFF.2383"; flanks "153238337-,153247301^"; structure "1^,2^"; splice_chain "153238311^,153238337^";
chrX	juncbase	alternative_donor	153246074	153247301	.	+	.	gene_id "alternative_donor.908"; transcript_id "alternative_donor.908"; gene_name "CUFF.2383"; flanks "153246074-,153247301^"; structure "1^,2^"; splice_chain "153238311^,153246074^";
chrX	juncbase	alternative_donor	107369417	107372011	.	+	.	gene_id "alternative_donor.909"; transcript_id "alternative_donor.909"; gene_name "CUFF.2355"; flanks "107369417-,107372011^"; structure "1^,2^"; splice_chain "107369417^,107370324^";
chr22	juncbase	intron_retention	30742301	30741179	.	-	.	gene_id "intron_retention.759"; transcript_id "intron_retention.759"; gene_name "CUFF.2282"; flanks "30742301-,30741179^"; structure "0,1^2-"; splice_chain ",30742301^30741179-";
chr22	juncbase	intron_retention	20748952	20749623	.	+	.	gene_id "intron_retention.760"; transcript_id "intron_retention.760"; gene_name ""; flanks "20748952-,20749623^"; structure "0,1^2-"; splice_chain ",20748952^20749623-";
chr22	juncbase	alternative_acceptor	21841216	21841854	.	-	.	gene_id "alternative_acceptor.641"; transcript_id "alternative_acceptor.641"; gene_name "CUFF.2266"; flanks "21841216-,21841854^"; structure "1-,2-"; splice_chain "21841264-,21841216-";
chr22	juncbase	alternative_donor	45148507	45173042	.	+	.	gene_id "alternative_donor.910"; transcript_id "alternative_donor.910"; gene_name "CUFF.2292"; flanks "45148507-,45173042^"; structure "1^,2^"; splice_chain "45148507^,45148620^";
chr22	juncbase	intron_retention	29684775	29687551	.	+	.	gene_id "intron_retention.761"; transcript_id "intron_retention.761"; gene_name "CUFF.2278"; flanks "29684775-,29687551^"; structure "0,1^2-"; splice_chain ",29684775^29687551-";
chr22	juncbase	jcn_only_AA	25855482	25856834	.	+	.	gene_id "jcn_only_AA.844"; transcript_id "jcn_only_AA.844"; gene_name "CUFF.2274"; flanks "25855482-,25856834^"; structure "1-,2-"; splice_chain "25856834-,25915890-";
chr22	juncbase	jcn_only_AA	25855482	25905150	.	+	.	gene_id "jcn_only_AA.845"; transcript_id "jcn_only_AA.845"; gene_name "CUFF.2274"; flanks "25855482-,25905150^"; structure "1-,2-"; splice_chain "25905150-,25915890-";
chr22	juncbase	alternative_acceptor	47188473	47188565	.	+	.	gene_id "alternative_acceptor.642"; transcript_id "alternative_acceptor.642"; gene_name ""; flanks "47188473-,47188565^"; structure "1-,2-"; splice_chain "47188565-,47189398-";
chr22	juncbase	alternative_acceptor	47188473	47189399	.	+	.	gene_id "alternative_acceptor.643"; transcript_id "alternative_acceptor.643"; gene_name ""; flanks "47188473-,47189399^"; structure "1-,2-"; splice_chain "47189398-,47189399-";
chr22	juncbase	jcn_only_AD	21056997	21057294	.	+	.	gene_id "jcn_only_AD.1087"; transcript_id "jcn_only_AD.1087"; gene_name "CUFF.2263"; flanks "21056997-,21057294^"; structure "1^,2^"; splice_chain "21056997^,21057181^";
chr22	juncbase	jcn_only_AA	45122514	45182337	.	+	.	gene_id "jcn_only_AA.846"; transcript_id "jcn_only_AA.846"; gene_name "CUFF.2260,CUFF.2292"; flanks "45122514-,45182337^"; structure "1-,2-"; splice_chain "45127610-,45182337-";
chr22	juncbase	intron_retention	18080960	18077382	.	-	.	gene_id "intron_retention.762"; transcript_id "intron_retention.762"; gene_name "CUFF.2255"; flanks "18080960-,18077382^"; structure "0,1^2-"; splice_chain ",18080960^18077382-";
chr22	juncbase	jcn_only_AD	24717291	24720188	.	+	.	gene_id "jcn_only_AD.1088"; transcript_id "jcn_only_AD.1088"; gene_name "CUFF.2270"; flanks "24717291-,24720188^"; structure "1^,2^"; splice_chain "24717291^,24718886^";
chr22	juncbase	jcn_only_AA	18096086	18102227	.	-	.	gene_id "jcn_only_AA.847"; transcript_id "jcn_only_AA.847"; gene_name "CUFF.2255"; flanks "18096086-,18102227^"; structure "1-,2-"; splice_chain "18101893-,18096086-";
chr22	juncbase	intron_retention	30748940	30742508	.	-	.	gene_id "intron_retention.763"; transcript_id "intron_retention.763"; gene_name "CUFF.2282"; flanks "30748940-,30742508^"; structure "0,1^2-"; splice_chain ",30748940^30742508-";
chr22	juncbase	jcn_only_AA	21056997	21057294	.	+	.	gene_id "jcn_only_AA.848"; transcript_id "jcn_only_AA.848"; gene_name "CUFF.2263"; flanks "21056997-,21057294^"; structure "1-,2-"; splice_chain "21057118-,21057294-";
chr22	juncbase	alternative_donor	25170289	25158488	.	-	.	gene_id "alternative_donor.911"; transcript_id "alternative_donor.911"; gene_name "CUFF.2272"; flanks "25170289-,25158488^"; structure "1^,2^"; splice_chain "25170289^,25165638^";
chr22	juncbase	intron_retention	30736198	30735023	.	-	.	gene_id "intron_retention.764"; transcript_id "intron_retention.764"; gene_name ""; flanks "30736198-,30735023^"; structure "0,1^2-"; splice_chain ",30736198^30735023-";
chr22	juncbase	alternative_acceptor	29668241	29668375	.	+	.	gene_id "alternative_acceptor.644"; transcript_id "alternative_acceptor.644"; gene_name "CUFF.2278"; flanks "29668241-,29668375^"; structure "1-,2-"; splice_chain "29668369-,29668375-";
chr22	juncbase	jcn_only_AD	51016513	51016363	.	-	.	gene_id "jcn_only_AD.1089"; transcript_id "jcn_only_AD.1089"; gene_name ""; flanks "51016513-,51016363^"; structure "1^,2^"; splice_chain "51016978^,51016513^";
chr22	juncbase	jcn_only_AD	51016815	51016363	.	-	.	gene_id "jcn_only_AD.1090"; transcript_id "jcn_only_AD.1090"; gene_name ""; flanks "51016815-,51016363^"; structure "1^,2^"; splice_chain "51016978^,51016815^";
chr22	juncbase	intron_retention	25855482	25856834	.	+	.	gene_id "intron_retention.765"; transcript_id "intron_retention.765"; gene_name ""; flanks "25855482-,25856834^"; structure "0,1^2-"; splice_chain ",25855482^25856834-";
chr22	juncbase	alternative_donor	19420130	19420788	.	+	.	gene_id "alternative_donor.912"; transcript_id "alternative_donor.912"; gene_name "CUFF.2257"; flanks "19420130-,19420788^"; structure "1^,2^"; splice_chain "19420130^,19420382^";
chr22	juncbase	alternative_acceptor	29538088	29563032	.	+	.	gene_id "alternative_acceptor.645"; transcript_id "alternative_acceptor.645"; gene_name "CUFF.2277"; flanks "29538088-,29563032^"; structure "1-,2-"; splice_chain "29550326-,29563032-";
chr22	juncbase	alternative_donor	51018486	51018231	.	-	.	gene_id "alternative_donor.913"; transcript_id "alternative_donor.913"; gene_name "CUFF.2303"; flanks "51018486-,51018231^"; structure "1^,2^"; splice_chain "51018486^,51018403^";
chr22	juncbase	intron_retention	21058344	21058476	.	+	.	gene_id "intron_retention.766"; transcript_id "intron_retention.766"; gene_name "CUFF.2263"; flanks "21058344-,21058476^"; structure "0,1^2-"; splice_chain ",21058344^21058476-";
chr22	juncbase	alternative_acceptor	25158488	25170289	.	-	.	gene_id "alternative_acceptor.646"; transcript_id "alternative_acceptor.646"; gene_name "CUFF.2272"; flanks "25158488-,25170289^"; structure "1-,2-"; splice_chain "25165756-,25158488-";
chr22	juncbase	alternative_acceptor	45173109	45182337	.	+	.	gene_id "alternative_acceptor.647"; transcript_id "alternative_acceptor.647"; gene_name "CUFF.2292"; flanks "45173109-,45182337^"; structure "1-,2-"; splice_chain "45181922-,45182337-";
chr22	juncbase	intron_retention	30735119	30735023	.	-	.	gene_id "intron_retention.767"; transcript_id "intron_retention.767"; gene_name ""; flanks "30735119-,30735023^"; structure "0,1^2-"; splice_chain ",30735119^30735023-";
chr22	juncbase	intron_retention	51007765	51007510	.	-	.	gene_id "intron_retention.768"; transcript_id "intron_retention.768"; gene_name "CUFF.2303"; flanks "51007765-,51007510^"; structure "0,1^2-"; splice_chain ",51007765^51007510-";
chr22	juncbase	jcn_only_AD	51016978	51016363	.	-	.	gene_id "jcn_only_AD.1091"; transcript_id "jcn_only_AD.1091"; gene_name "CUFF.2303"; flanks "51016978-,51016363^"; structure "1^,2^"; splice_chain "51016978^,51016513^";
chr22	juncbase	jcn_only_AD	51016815	51016363	.	-	.	gene_id "jcn_only_AD.1092"; transcript_id "jcn_only_AD.1092"; gene_name "CUFF.2303"; flanks "51016815-,51016363^"; structure "1^,2^"; splice_chain "51016815^,51016513^";
chr22	juncbase	jcn_only_AA	25855482	25856834	.	+	.	gene_id "jcn_only_AA.849"; transcript_id "jcn_only_AA.849"; gene_name "CUFF.2274"; flanks "25855482-,25856834^"; structure "1-,2-"; splice_chain "25856834-,25905150-";
chr22	juncbase	jcn_only_AA	25855482	25915890	.	+	.	gene_id "jcn_only_AA.850"; transcript_id "jcn_only_AA.850"; gene_name "CUFF.2274"; flanks "25855482-,25915890^"; structure "1-,2-"; splice_chain "25905150-,25915890-";
chr22	juncbase	intron_retention	30736684	30736370	.	-	.	gene_id "intron_retention.769"; transcript_id "intron_retention.769"; gene_name "CUFF.2282"; flanks "30736684-,30736370^"; structure "0,1^2-"; splice_chain ",30736684^30736370-";
chr22	juncbase	jcn_only_AA	47188473	47188565	.	+	.	gene_id "jcn_only_AA.851"; transcript_id "jcn_only_AA.851"; gene_name "CUFF.2295"; flanks "47188473-,47188565^"; structure "1-,2-"; splice_chain "47188565-,47189399-";
chr22	juncbase	jcn_only_AA	47188473	47189398	.	+	.	gene_id "jcn_only_AA.852"; transcript_id "jcn_only_AA.852"; gene_name "CUFF.2295"; flanks "47188473-,47189398^"; structure "1-,2-"; splice_chain "47189398-,47189399-";
chr22	juncbase	jcn_only_AA	29668420	29669730	.	+	.	gene_id "jcn_only_AA.853"; transcript_id "jcn_only_AA.853"; gene_name "CUFF.2278"; flanks "29668420-,29669730^"; structure "1-,2-"; splice_chain "29669730-,29674120-";
chr22	juncbase	jcn_only_AA	29668420	29669727	.	+	.	gene_id "jcn_only_AA.854"; transcript_id "jcn_only_AA.854"; gene_name "CUFF.2278"; flanks "29668420-,29669727^"; structure "1-,2-"; splice_chain "29669727-,29674120-";
chr22	juncbase	jcn_only_AA	21830449	21832079	.	-	.	gene_id "jcn_only_AA.855"; transcript_id "jcn_only_AA.855"; gene_name "CUFF.2266"; flanks "21830449-,21832079^"; structure "1-,2-"; splice_chain "21831053-,21830449-";
chr22	juncbase	jcn_only_AD	37705364	37707029	.	+	.	gene_id "jcn_only_AD.1093"; transcript_id "jcn_only_AD.1093"; gene_name "CUFF.2288"; flanks "37705364-,37707029^"; structure "1^,2^"; splice_chain "37705364^,37706073^";
chr22	juncbase	intron_retention	51015286	51015022	.	-	.	gene_id "intron_retention.770"; transcript_id "intron_retention.770"; gene_name ""; flanks "51015286-,51015022^"; structure "0,1^2-"; splice_chain ",51015286^51015022-";
chr22	juncbase	cassette	24765288	24808616	.	+	.	gene_id "cassette.507"; transcript_id "cassette.507"; gene_name "CUFF.2270"; flanks "24765288-,24808616^"; structure "0,1-2^"; splice_chain ",24807556-24807672^";
chr22	juncbase	jcn_only_AD	21830291	21829589	.	-	.	gene_id "jcn_only_AD.1094"; transcript_id "jcn_only_AD.1094"; gene_name ""; flanks "21830291-,21829589^"; structure "1^,2^"; splice_chain "21830291^,21830281^";
chr22	juncbase	jcn_only_AD	51039579	51020786	.	-	.	gene_id "jcn_only_AD.1095"; transcript_id "jcn_only_AD.1095"; gene_name ""; flanks "51039579-,51020786^"; structure "1^,2^"; splice_chain "51039579^,51020987^";
chr22	juncbase	alternative_donor	20748624	20749623	.	+	.	gene_id "alternative_donor.914"; transcript_id "alternative_donor.914"; gene_name "CUFF.2260"; flanks "20748624-,20749623^"; structure "1^,2^"; splice_chain "20748624^,20748952^";
chr22	juncbase	cassette	47193517	47287162	.	+	.	gene_id "cassette.508"; transcript_id "cassette.508"; gene_name "CUFF.2295"; flanks "47193517-,47287162^"; structure "0,1-2^"; splice_chain ",47274549-47274619^";
chr22	juncbase	jcn_only_AD	45148507	45173042	.	+	.	gene_id "jcn_only_AD.1096"; transcript_id "jcn_only_AD.1096"; gene_name "CUFF.2292"; flanks "45148507-,45173042^"; structure "1^,2^"; splice_chain "45148507^,45148620^";
chr22	juncbase	intron_retention	29684775	29686402	.	+	.	gene_id "intron_retention.771"; transcript_id "intron_retention.771"; gene_name "CUFF.2278"; flanks "29684775-,29686402^"; structure "0,1^2-"; splice_chain ",29684775^29686402-";
chr22	juncbase	intron_retention	21058328	21058476	.	+	.	gene_id "intron_retention.772"; transcript_id "intron_retention.772"; gene_name "CUFF.2263"; flanks "21058328-,21058476^"; structure "0,1^2-"; splice_chain ",21058328^21058476-";
chr22	juncbase	cassette	29674205	29682912	.	+	.	gene_id "cassette.509"; transcript_id "cassette.509"; gene_name "CUFF.2278"; flanks "29674205-,29682912^"; structure "0,1-2^"; splice_chain ",29678379-29678546^";
chr22	juncbase	alternative_donor	51039579	51020786	.	-	.	gene_id "alternative_donor.915"; transcript_id "alternative_donor.915"; gene_name ""; flanks "51039579-,51020786^"; structure "1^,2^"; splice_chain "51039579^,51020987^";
chr22	juncbase	jcn_only_AA	45173109	45182337	.	+	.	gene_id "jcn_only_AA.856"; transcript_id "jcn_only_AA.856"; gene_name "CUFF.2292"; flanks "45173109-,45182337^"; structure "1-,2-"; splice_chain "45181922-,45182337-";
chr22	juncbase	intron_retention	51009804	51009721	.	-	.	gene_id "intron_retention.773"; transcript_id "intron_retention.773"; gene_name "CUFF.2303"; flanks "51009804-,51009721^"; structure "0,1^2-"; splice_chain ",51009804^51009721-";
chr22	juncbase	alternative_donor	37699443	37705253	.	+	.	gene_id "alternative_donor.916"; transcript_id "alternative_donor.916"; gene_name "CUFF.2288"; flanks "37699443-,37705253^"; structure "1^,2^"; splice_chain "37699443^,37700327^";
chr22	juncbase	jcn_only_AA	30735168	30752719	.	-	.	gene_id "jcn_only_AA.857"; transcript_id "jcn_only_AA.857"; gene_name "CUFF.2282"; flanks "30735168-,30752719^"; structure "1-,2-"; splice_chain "30749061-,30735168-";
chr22	juncbase	jcn_only_AD	37699443	37705253	.	+	.	gene_id "jcn_only_AD.1097"; transcript_id "jcn_only_AD.1097"; gene_name "CUFF.2288"; flanks "37699443-,37705253^"; structure "1^,2^"; splice_chain "37699443^,37700327^";
chr22	juncbase	jcn_only_AA	21828969	21829500	.	-	.	gene_id "jcn_only_AA.858"; transcript_id "jcn_only_AA.858"; gene_name "CUFF.2266"; flanks "21828969-,21829500^"; structure "1-,2-"; splice_chain "21829089-,21828969-";
chr22	juncbase	alternative_acceptor	37695347	37696948	.	+	.	gene_id "alternative_acceptor.648"; transcript_id "alternative_acceptor.648"; gene_name "CUFF.2288"; flanks "37695347-,37696948^"; structure "1-,2-"; splice_chain "37696194-,37696948-";
chr22	juncbase	alternative_acceptor	37695347	37696111	.	+	.	gene_id "alternative_acceptor.649"; transcript_id "alternative_acceptor.649"; gene_name "CUFF.2288"; flanks "37695347-,37696111^"; structure "1-,2-"; splice_chain "37696111-,37696194-";
chr22	juncbase	intron_retention	20748624	20749623	.	+	.	gene_id "intron_retention.774"; transcript_id "intron_retention.774"; gene_name "CUFF.2260"; flanks "20748624-,20749623^"; structure "0,1^2-"; splice_chain ",20748624^20749623-";
chr22	juncbase	jcn_only_AD	51020678	51020291	.	-	.	gene_id "jcn_only_AD.1098"; transcript_id "jcn_only_AD.1098"; gene_name "CUFF.2303"; flanks "51020678-,51020291^"; structure "1^,2^"; splice_chain "51020678^,51020458^";
chr22	juncbase	jcn_only_AA	47188473	47189398	.	+	.	gene_id "jcn_only_AA.859"; transcript_id "jcn_only_AA.859"; gene_name "CUFF.2295"; flanks "47188473-,47189398^"; structure "1-,2-"; splice_chain "47188565-,47189398-";
chr22	juncbase	jcn_only_AA	47188473	47189399	.	+	.	gene_id "jcn_only_AA.860"; transcript_id "jcn_only_AA.860"; gene_name "CUFF.2295"; flanks "47188473-,47189399^"; structure "1-,2-"; splice_chain "47188565-,47189399-";
chr22	juncbase	jcn_only_AD	51015785	51015463	.	-	.	gene_id "jcn_only_AD.1099"; transcript_id "jcn_only_AD.1099"; gene_name "CUFF.2282"; flanks "51015785-,51015463^"; structure "1^,2^"; splice_chain "51015785^,51015753^";
chr22	juncbase	jcn_only_AD	30736198	30735023	.	-	.	gene_id "jcn_only_AD.1100"; transcript_id "jcn_only_AD.1100"; gene_name "CUFF.2303"; flanks "30736198-,30735023^"; structure "1^,2^"; splice_chain "30736198^,30735119^";
chr22	juncbase	cassette	51015286	51014764	.	-	.	gene_id "cassette.510"; transcript_id "cassette.510"; gene_name "CUFF.2303"; flanks "51015286-,51014764^"; structure "0,1-2^"; splice_chain ",51015066-51014965^";
chr22	juncbase	jcn_only_AA	25124341	25130051	.	-	.	gene_id "jcn_only_AA.861"; transcript_id "jcn_only_AA.861"; gene_name "CUFF.2272"; flanks "25124341-,25130051^"; structure "1-,2-"; splice_chain "25124368-,25124341-";
chr22	juncbase	jcn_only_AA	37695347	37696948	.	+	.	gene_id "jcn_only_AA.862"; transcript_id "jcn_only_AA.862"; gene_name "CUFF.2288"; flanks "37695347-,37696948^"; structure "1-,2-"; splice_chain "37696194-,37696948-";
chr22	juncbase	jcn_only_AA	37695347	37696111	.	+	.	gene_id "jcn_only_AA.863"; transcript_id "jcn_only_AA.863"; gene_name "CUFF.2288"; flanks "37695347-,37696111^"; structure "1-,2-"; splice_chain "37696111-,37696194-";
chr22	juncbase	cassette	37697060	37699295	.	+	.	gene_id "cassette.511"; transcript_id "cassette.511"; gene_name "CUFF.2288"; flanks "37697060-,37699295^"; structure "0,1-2^"; splice_chain ",37697976-37698072^";
chr22	juncbase	jcn_only_AD	51016513	51016363	.	-	.	gene_id "jcn_only_AD.1101"; transcript_id "jcn_only_AD.1101"; gene_name "CUFF.2303"; flanks "51016513-,51016363^"; structure "1^,2^"; splice_chain "51016815^,51016513^";
chr22	juncbase	jcn_only_AD	51016978	51016363	.	-	.	gene_id "jcn_only_AD.1102"; transcript_id "jcn_only_AD.1102"; gene_name "CUFF.2303"; flanks "51016978-,51016363^"; structure "1^,2^"; splice_chain "51016978^,51016815^";
chr22	juncbase	jcn_only_AA	29668241	29668375	.	+	.	gene_id "jcn_only_AA.864"; transcript_id "jcn_only_AA.864"; gene_name "CUFF.2278"; flanks "29668241-,29668375^"; structure "1-,2-"; splice_chain "29668369-,29668375-";
chr22	juncbase	jcn_only_AA	29694885	29695224	.	+	.	gene_id "jcn_only_AA.865"; transcript_id "jcn_only_AA.865"; gene_name "CUFF.2278"; flanks "29694885-,29695224^"; structure "1-,2-"; splice_chain "29695185-,29695224-";
chr22	juncbase	alternative_acceptor	21828969	21829500	.	-	.	gene_id "alternative_acceptor.650"; transcript_id "alternative_acceptor.650"; gene_name "CUFF.2266"; flanks "21828969-,21829500^"; structure "1-,2-"; splice_chain "21829089-,21828969-";
chr22	juncbase	intron_retention	29695321	29695589	.	+	.	gene_id "intron_retention.775"; transcript_id "intron_retention.775"; gene_name "CUFF.2278"; flanks "29695321-,29695589^"; structure "0,1^2-"; splice_chain ",29695321^29695589-";
chr22	juncbase	intron_retention	20753980	20754922	.	+	.	gene_id "intron_retention.776"; transcript_id "intron_retention.776"; gene_name ""; flanks "20753980-,20754922^"; structure "0,1^2-"; splice_chain ",20753980^20754922-";
chr22	juncbase	alternative_donor	51016978	51016363	.	-	.	gene_id "alternative_donor.917"; transcript_id "alternative_donor.917"; gene_name "CUFF.2303"; flanks "51016978-,51016363^"; structure "1^,2^"; splice_chain "51016978^,51016513^";
chr22	juncbase	alternative_donor	51016815	51016363	.	-	.	gene_id "alternative_donor.918"; transcript_id "alternative_donor.918"; gene_name "CUFF.2303"; flanks "51016815-,51016363^"; structure "1^,2^"; splice_chain "51016815^,51016513^";
chr22	juncbase	cassette	29669853	29674019	.	+	.	gene_id "cassette.512"; transcript_id "cassette.512"; gene_name "CUFF.2278"; flanks "29669853-,29674019^"; structure "0,1-2^"; splice_chain ",29670254-29670271^";
chr22	juncbase	cassette	45204318	45210552	.	+	.	gene_id "cassette.513"; transcript_id "cassette.513"; gene_name "CUFF.2292"; flanks "45204318-,45210552^"; structure "0,1-2^"; splice_chain ",45204886-45204978^";
chr22	juncbase	intron_retention	25855482	25915890	.	+	.	gene_id "intron_retention.777"; transcript_id "intron_retention.777"; gene_name ""; flanks "25855482-,25915890^"; structure "0,1^2-"; splice_chain ",25855482^25915890-";
chr22	juncbase	alternative_donor	51016513	51016363	.	-	.	gene_id "alternative_donor.919"; transcript_id "alternative_donor.919"; gene_name ""; flanks "51016513-,51016363^"; structure "1^,2^"; splice_chain "51016978^,51016513^";
chr22	juncbase	alternative_donor	51016815	51016363	.	-	.	gene_id "alternative_donor.920"; transcript_id "alternative_donor.920"; gene_name ""; flanks "51016815-,51016363^"; structure "1^,2^"; splice_chain "51016978^,51016815^";
chr22	juncbase	intron_retention	51020678	51020524	.	-	.	gene_id "intron_retention.778"; transcript_id "intron_retention.778"; gene_name ""; flanks "51020678-,51020524^"; structure "0,1^2-"; splice_chain ",51020678^51020524-";
chr22	juncbase	jcn_only_AA	25855482	25905150	.	+	.	gene_id "jcn_only_AA.866"; transcript_id "jcn_only_AA.866"; gene_name "CUFF.2288"; flanks "25855482-,25905150^"; structure "1-,2-"; splice_chain "25856834-,25905150-";
chr22	juncbase	jcn_only_AA	25855482	25915890	.	+	.	gene_id "jcn_only_AA.867"; transcript_id "jcn_only_AA.867"; gene_name "CUFF.2288"; flanks "25855482-,25915890^"; structure "1-,2-"; splice_chain "25856834-,25915890-";
chr22	juncbase	intron_retention	29684775	29687554	.	+	.	gene_id "intron_retention.779"; transcript_id "intron_retention.779"; gene_name "CUFF.2278"; flanks "29684775-,29687554^"; structure "0,1^2-"; splice_chain ",29684775^29687554-";
chr22	juncbase	cassette	20748952	20754922	.	+	.	gene_id "cassette.514"; transcript_id "cassette.514"; gene_name "CUFF.2260"; flanks "20748952-,20754922^"; structure "0,1-2^"; splice_chain ",20749623-20749708^";
chr22	juncbase	cassette	47189738	47274549	.	+	.	gene_id "cassette.515"; transcript_id "cassette.515"; gene_name "CUFF.2295"; flanks "47189738-,47274549^"; structure "0,1-2^"; splice_chain ",47193341-47193517^";
chr22	juncbase	jcn_only_AA	29538088	29563032	.	+	.	gene_id "jcn_only_AA.868"; transcript_id "jcn_only_AA.868"; gene_name "CUFF.2277"; flanks "29538088-,29563032^"; structure "1-,2-"; splice_chain "29550326-,29563032-";
chr22	juncbase	intron_retention	21846283	21842670	.	-	.	gene_id "intron_retention.780"; transcript_id "intron_retention.780"; gene_name "CUFF.2266"; flanks "21846283-,21842670^"; structure "0,1^2-"; splice_chain ",21846283^21842670-";
chr22	juncbase	alternative_acceptor	37695347	37696194	.	+	.	gene_id "alternative_acceptor.651"; transcript_id "alternative_acceptor.651"; gene_name ""; flanks "37695347-,37696194^"; structure "1-,2-"; splice_chain "37696194-,37696948-";
chr22	juncbase	alternative_acceptor	37695347	37696111	.	+	.	gene_id "alternative_acceptor.652"; transcript_id "alternative_acceptor.652"; gene_name ""; flanks "37695347-,37696111^"; structure "1-,2-"; splice_chain "37696111-,37696948-";
chr22	juncbase	cassette	25158365	25155956	.	-	.	gene_id "cassette.516"; transcript_id "cassette.516"; gene_name "CUFF.2272"; flanks "25158365-,25155956^"; structure "0,1-2^"; splice_chain ",25157928-25157846^";
chr22	juncbase	jcn_only_AD	19420130	19420788	.	+	.	gene_id "jcn_only_AD.1103"; transcript_id "jcn_only_AD.1103"; gene_name "CUFF.2257"; flanks "19420130-,19420788^"; structure "1^,2^"; splice_chain "19420130^,19420382^";
chr22	juncbase	jcn_only_AA	47188473	47188565	.	+	.	gene_id "jcn_only_AA.869"; transcript_id "jcn_only_AA.869"; gene_name ""; flanks "47188473-,47188565^"; structure "1-,2-"; splice_chain "47188565-,47189398-";
chr22	juncbase	jcn_only_AA	47188473	47189399	.	+	.	gene_id "jcn_only_AA.870"; transcript_id "jcn_only_AA.870"; gene_name ""; flanks "47188473-,47189399^"; structure "1-,2-"; splice_chain "47189398-,47189399-";
chr22	juncbase	jcn_only_AD	29664338	29668205	.	+	.	gene_id "jcn_only_AD.1104"; transcript_id "jcn_only_AD.1104"; gene_name "CUFF.2278"; flanks "29664338-,29668205^"; structure "1^,2^"; splice_chain "29664338^,29665651^";
chr22	juncbase	cassette	21057980	21058256	.	+	.	gene_id "cassette.517"; transcript_id "cassette.517"; gene_name "CUFF.2263"; flanks "21057980-,21058256^"; structure "0,1-2^"; splice_chain ",21058107-21058171^";
chr22	juncbase	cassette	18111369	18096086	.	-	.	gene_id "cassette.518"; transcript_id "cassette.518"; gene_name "CUFF.2255"; flanks "18111369-,18096086^"; structure "0,1-2^"; splice_chain ",18102292-18102227^";
chr22	juncbase	intron_retention	25916129	25916649	.	+	.	gene_id "intron_retention.781"; transcript_id "intron_retention.781"; gene_name ""; flanks "25916129-,25916649^"; structure "0,1^2-"; splice_chain ",25916129^25916649-";
chr22	juncbase	intron_retention	51020458	51020291	.	-	.	gene_id "intron_retention.782"; transcript_id "intron_retention.782"; gene_name "CUFF.2303"; flanks "51020458-,51020291^"; structure "0,1^2-"; splice_chain ",51020458^51020291-";
chr22	juncbase	intron_retention	29684744	29688489	.	+	.	gene_id "intron_retention.783"; transcript_id "intron_retention.783"; gene_name ""; flanks "29684744-,29688489^"; structure "0,1^2-"; splice_chain ",29684744^29688489-";
chr22	juncbase	jcn_only_AA	21841216	21841854	.	-	.	gene_id "jcn_only_AA.871"; transcript_id "jcn_only_AA.871"; gene_name "CUFF.2266"; flanks "21841216-,21841854^"; structure "1-,2-"; splice_chain "21841264-,21841216-";
chr22	juncbase	intron_retention	51018486	51018231	.	-	.	gene_id "intron_retention.784"; transcript_id "intron_retention.784"; gene_name "CUFF.2303"; flanks "51018486-,51018231^"; structure "0,1^2-"; splice_chain ",51018486^51018231-";
chr22	juncbase	alternative_acceptor	25855482	25856834	.	+	.	gene_id "alternative_acceptor.653"; transcript_id "alternative_acceptor.653"; gene_name "CUFF.2274"; flanks "25855482-,25856834^"; structure "1-,2-"; splice_chain "25856834-,25915890-";
chr22	juncbase	alternative_acceptor	25855482	25905150	.	+	.	gene_id "alternative_acceptor.654"; transcript_id "alternative_acceptor.654"; gene_name "CUFF.2274"; flanks "25855482-,25905150^"; structure "1-,2-"; splice_chain "25905150-,25915890-";
chr22	juncbase	intron_retention	51018403	51018231	.	-	.	gene_id "intron_retention.785"; transcript_id "intron_retention.785"; gene_name "CUFF.2303"; flanks "51018403-,51018231^"; structure "0,1^2-"; splice_chain ",51018403^51018231-";
chr22	juncbase	intron_retention	51016513	51016363	.	-	.	gene_id "intron_retention.786"; transcript_id "intron_retention.786"; gene_name "CUFF.2303"; flanks "51016513-,51016363^"; structure "0,1^2-"; splice_chain ",51016513^51016363-";
chr22	juncbase	intron_retention	51018403	51018259	.	-	.	gene_id "intron_retention.787"; transcript_id "intron_retention.787"; gene_name "CUFF.2303"; flanks "51018403-,51018259^"; structure "0,1^2-"; splice_chain ",51018403^51018259-";
chr22	juncbase	intron_retention	20748624	20748853	.	+	.	gene_id "intron_retention.788"; transcript_id "intron_retention.788"; gene_name "CUFF.2260"; flanks "20748624-,20748853^"; structure "0,1^2-"; splice_chain ",20748624^20748853-";
chr22	juncbase	jcn_only_AA	37695347	37696194	.	+	.	gene_id "jcn_only_AA.872"; transcript_id "jcn_only_AA.872"; gene_name "CUFF.2288"; flanks "37695347-,37696194^"; structure "1-,2-"; splice_chain "37696111-,37696194-";
chr22	juncbase	jcn_only_AA	37695347	37696948	.	+	.	gene_id "jcn_only_AA.873"; transcript_id "jcn_only_AA.873"; gene_name "CUFF.2288"; flanks "37695347-,37696948^"; structure "1-,2-"; splice_chain "37696111-,37696948-";
chr22	juncbase	jcn_only_AA	51018231	51018403	.	-	.	gene_id "jcn_only_AA.874"; transcript_id "jcn_only_AA.874"; gene_name "CUFF.2303"; flanks "51018231-,51018403^"; structure "1-,2-"; splice_chain "51018259-,51018231-";
chr22	juncbase	jcn_only_AD	25170289	25158488	.	-	.	gene_id "jcn_only_AD.1105"; transcript_id "jcn_only_AD.1105"; gene_name "CUFF.2272"; flanks "25170289-,25158488^"; structure "1^,2^"; splice_chain "25170289^,25165638^";
chr22	juncbase	alternative_acceptor	25855482	25856834	.	+	.	gene_id "alternative_acceptor.655"; transcript_id "alternative_acceptor.655"; gene_name "CUFF.2274"; flanks "25855482-,25856834^"; structure "1-,2-"; splice_chain "25856834-,25905150-";
chr22	juncbase	alternative_acceptor	25855482	25915890	.	+	.	gene_id "alternative_acceptor.656"; transcript_id "alternative_acceptor.656"; gene_name "CUFF.2274"; flanks "25855482-,25915890^"; structure "1-,2-"; splice_chain "25905150-,25915890-";
chr22	juncbase	alternative_acceptor	29521404	29533490	.	+	.	gene_id "alternative_acceptor.657"; transcript_id "alternative_acceptor.657"; gene_name "CUFF.2277"; flanks "29521404-,29533490^"; structure "1-,2-"; splice_chain "29533330-,29533490-";
chr22	juncbase	jcn_only_AD	21056594	21056874	.	+	.	gene_id "jcn_only_AD.1106"; transcript_id "jcn_only_AD.1106"; gene_name "CUFF.2263"; flanks "21056594-,21056874^"; structure "1^,2^"; splice_chain "21056594^,21056748^";
chr22	juncbase	alternative_donor	51020678	51020291	.	-	.	gene_id "alternative_donor.921"; transcript_id "alternative_donor.921"; gene_name "CUFF.2303"; flanks "51020678-,51020291^"; structure "1^,2^"; splice_chain "51020678^,51020458^";
chr22	juncbase	alternative_donor	51016513	51016363	.	-	.	gene_id "alternative_donor.922"; transcript_id "alternative_donor.922"; gene_name "CUFF.2303"; flanks "51016513-,51016363^"; structure "1^,2^"; splice_chain "51016815^,51016513^";
chr22	juncbase	alternative_donor	51016978	51016363	.	-	.	gene_id "alternative_donor.923"; transcript_id "alternative_donor.923"; gene_name "CUFF.2303"; flanks "51016978-,51016363^"; structure "1^,2^"; splice_chain "51016978^,51016815^";
chr22	juncbase	intron_retention	51018787	51018700	.	-	.	gene_id "intron_retention.789"; transcript_id "intron_retention.789"; gene_name "CUFF.2303"; flanks "51018787-,51018700^"; structure "0,1^2-"; splice_chain ",51018787^51018700-";
chr22	juncbase	jcn_only_AD	51012764	51012144	.	-	.	gene_id "jcn_only_AD.1107"; transcript_id "jcn_only_AD.1107"; gene_name "CUFF.2303"; flanks "51012764-,51012144^"; structure "1^,2^"; splice_chain "51012764^,51012237^";
chr22	juncbase	intron_retention	45204318	45204552	.	+	.	gene_id "intron_retention.790"; transcript_id "intron_retention.790"; gene_name "CUFF.2292"; flanks "45204318-,45204552^"; structure "0,1^2-"; splice_chain ",45204318^45204552-";
chr22	juncbase	intron_retention	51012054	51011351	.	-	.	gene_id "intron_retention.791"; transcript_id "intron_retention.791"; gene_name ""; flanks "51012054-,51011351^"; structure "0,1^2-"; splice_chain ",51012054^51011351-";
chr22	juncbase	jcn_only_AA	37699443	37705253	.	+	.	gene_id "jcn_only_AA.875"; transcript_id "jcn_only_AA.875"; gene_name "CUFF.2278,CUFF.2288"; flanks "37699443-,37705253^"; structure "1-,2-"; splice_chain "37700213-,37705253-";
chr22	juncbase	alternative_acceptor	51012144	51012764	.	-	.	gene_id "alternative_acceptor.658"; transcript_id "alternative_acceptor.658"; gene_name "CUFF.2303"; flanks "51012144-,51012764^"; structure "1-,2-"; splice_chain "51012350-,51012144-";
chr22	juncbase	alternative_acceptor	29694885	29695224	.	+	.	gene_id "alternative_acceptor.659"; transcript_id "alternative_acceptor.659"; gene_name "CUFF.2278"; flanks "29694885-,29695224^"; structure "1-,2-"; splice_chain "29695185-,29695224-";
chr22	juncbase	alternative_donor	47309342	47393530	.	+	.	gene_id "alternative_donor.924"; transcript_id "alternative_donor.924"; gene_name "CUFF.2295"; flanks "47309342-,47393530^"; structure "1^,2^"; splice_chain "47309342^,47370295^";
chr22	juncbase	alternative_acceptor	21056997	21057294	.	+	.	gene_id "alternative_acceptor.660"; transcript_id "alternative_acceptor.660"; gene_name "CUFF.2263"; flanks "21056997-,21057294^"; structure "1-,2-"; splice_chain "21057118-,21057294-";
chr22	juncbase	alternative_acceptor	47188473	47188565	.	+	.	gene_id "alternative_acceptor.661"; transcript_id "alternative_acceptor.661"; gene_name "CUFF.2295"; flanks "47188473-,47188565^"; structure "1-,2-"; splice_chain "47188565-,47189399-";
chr22	juncbase	alternative_acceptor	47188473	47189398	.	+	.	gene_id "alternative_acceptor.662"; transcript_id "alternative_acceptor.662"; gene_name "CUFF.2295"; flanks "47188473-,47189398^"; structure "1-,2-"; splice_chain "47189398-,47189399-";
chr22	juncbase	jcn_only_AD	47309342	47393530	.	+	.	gene_id "jcn_only_AD.1108"; transcript_id "jcn_only_AD.1108"; gene_name "CUFF.2295"; flanks "47309342-,47393530^"; structure "1^,2^"; splice_chain "47309342^,47370295^";
chr22	juncbase	intron_retention	21832079	21830449	.	-	.	gene_id "intron_retention.792"; transcript_id "intron_retention.792"; gene_name ""; flanks "21832079-,21830449^"; structure "0,1^2-"; splice_chain ",21832079^21830449-";
chr22	juncbase	jcn_only_AA	29683123	29688126	.	+	.	gene_id "jcn_only_AA.876"; transcript_id "jcn_only_AA.876"; gene_name ""; flanks "29683123-,29688126^"; structure "1-,2-"; splice_chain "29684595-,29688126-";
chr22	juncbase	alternative_donor	29469209	29490246	.	+	.	gene_id "alternative_donor.925"; transcript_id "alternative_donor.925"; gene_name "CUFF.2277"; flanks "29469209-,29490246^"; structure "1^,2^"; splice_chain "29469209^,29469215^";
chr22	juncbase	jcn_only_AD	20748624	20749623	.	+	.	gene_id "jcn_only_AD.1109"; transcript_id "jcn_only_AD.1109"; gene_name "CUFF.2260"; flanks "20748624-,20749623^"; structure "1^,2^"; splice_chain "20748624^,20748952^";
chr22	juncbase	intron_retention	51020987	51020786	.	-	.	gene_id "intron_retention.793"; transcript_id "intron_retention.793"; gene_name ""; flanks "51020987-,51020786^"; structure "0,1^2-"; splice_chain ",51020987^51020786-";
chr22	juncbase	jcn_only_AD	21058328	21058476	.	+	.	gene_id "jcn_only_AD.1110"; transcript_id "jcn_only_AD.1110"; gene_name "CUFF.2263"; flanks "21058328-,21058476^"; structure "1^,2^"; splice_chain "21058328^,21058344^";
chr22	juncbase	alternative_donor	51015785	51015463	.	-	.	gene_id "alternative_donor.926"; transcript_id "alternative_donor.926"; gene_name "CUFF.2282"; flanks "51015785-,51015463^"; structure "1^,2^"; splice_chain "51015785^,51015753^";
chr22	juncbase	alternative_acceptor	47188473	47189398	.	+	.	gene_id "alternative_acceptor.663"; transcript_id "alternative_acceptor.663"; gene_name "CUFF.2295"; flanks "47188473-,47189398^"; structure "1-,2-"; splice_chain "47188565-,47189398-";
chr22	juncbase	alternative_acceptor	47188473	47189399	.	+	.	gene_id "alternative_acceptor.664"; transcript_id "alternative_acceptor.664"; gene_name "CUFF.2295"; flanks "47188473-,47189399^"; structure "1-,2-"; splice_chain "47188565-,47189399-";
chr22	juncbase	intron_retention	51010435	51009962	.	-	.	gene_id "intron_retention.794"; transcript_id "intron_retention.794"; gene_name ""; flanks "51010435-,51009962^"; structure "0,1^2-"; splice_chain ",51010435^51009962-";
chr22	juncbase	intron_retention	20755048	20755567	.	+	.	gene_id "intron_retention.795"; transcript_id "intron_retention.795"; gene_name ""; flanks "20755048-,20755567^"; structure "0,1^2-"; splice_chain ",20755048^20755567-";
chr22	juncbase	intron_retention	29695270	29695589	.	+	.	gene_id "intron_retention.796"; transcript_id "intron_retention.796"; gene_name "CUFF.2278"; flanks "29695270-,29695589^"; structure "0,1^2-"; splice_chain ",29695270^29695589-";
chr22	juncbase	intron_retention	51015286	51015066	.	-	.	gene_id "intron_retention.797"; transcript_id "intron_retention.797"; gene_name "CUFF.2303"; flanks "51015286-,51015066^"; structure "0,1^2-"; splice_chain ",51015286^51015066-";
chr22	juncbase	alternative_acceptor	21832390	21832874	.	-	.	gene_id "alternative_acceptor.665"; transcript_id "alternative_acceptor.665"; gene_name "CUFF.2266"; flanks "21832390-,21832874^"; structure "1-,2-"; splice_chain "21832450-,21832390-";
chr22	juncbase	intron_retention	19420130	19420788	.	+	.	gene_id "intron_retention.798"; transcript_id "intron_retention.798"; gene_name "CUFF.2257"; flanks "19420130-,19420788^"; structure "0,1^2-"; splice_chain ",19420130^19420788-";
chr22	juncbase	intron_retention	45148507	45182337	.	+	.	gene_id "intron_retention.799"; transcript_id "intron_retention.799"; gene_name "CUFF.2292"; flanks "45148507-,45182337^"; structure "0,1^2-"; splice_chain ",45148507^45182337-";
chr22	juncbase	alternative_acceptor	25124341	25130051	.	-	.	gene_id "alternative_acceptor.666"; transcript_id "alternative_acceptor.666"; gene_name "CUFF.2272"; flanks "25124341-,25130051^"; structure "1-,2-"; splice_chain "25124368-,25124341-";
chr22	juncbase	intron_retention	20748952	20754922	.	+	.	gene_id "intron_retention.800"; transcript_id "intron_retention.800"; gene_name ""; flanks "20748952-,20754922^"; structure "0,1^2-"; splice_chain ",20748952^20754922-";
chr22	juncbase	alternative_donor	29664338	29668205	.	+	.	gene_id "alternative_donor.927"; transcript_id "alternative_donor.927"; gene_name "CUFF.2278"; flanks "29664338-,29668205^"; structure "1^,2^"; splice_chain "29664338^,29665651^";
chr22	juncbase	cassette	45148507	45182337	.	+	.	gene_id "cassette.519"; transcript_id "cassette.519"; gene_name "CUFF.2292"; flanks "45148507-,45182337^"; structure "0,1-2^"; splice_chain ",45173042-45173109^";
chr22	juncbase	alternative_acceptor	51018231	51018403	.	-	.	gene_id "alternative_acceptor.667"; transcript_id "alternative_acceptor.667"; gene_name "CUFF.2303"; flanks "51018231-,51018403^"; structure "1-,2-"; splice_chain "51018259-,51018231-";
chr22	juncbase	jcn_only_AA	25158488	25170289	.	-	.	gene_id "jcn_only_AA.877"; transcript_id "jcn_only_AA.877"; gene_name "CUFF.2272"; flanks "25158488-,25170289^"; structure "1-,2-"; splice_chain "25165756-,25158488-";
chr22	juncbase	intron_retention	21058171	21058256	.	+	.	gene_id "intron_retention.801"; transcript_id "intron_retention.801"; gene_name "CUFF.2263"; flanks "21058171-,21058256^"; structure "0,1^2-"; splice_chain ",21058171^21058256-";
chr22	juncbase	jcn_only_AA	47308084	47370186	.	+	.	gene_id "jcn_only_AA.878"; transcript_id "jcn_only_AA.878"; gene_name "CUFF.2295"; flanks "47308084-,47370186^"; structure "1-,2-"; splice_chain "47309230-,47370186-";
chr22	juncbase	intron_retention	29687588	29688126	.	+	.	gene_id "intron_retention.802"; transcript_id "intron_retention.802"; gene_name "CUFF.2278"; flanks "29687588-,29688126^"; structure "0,1^2-"; splice_chain ",29687588^29688126-";
chr22	juncbase	alternative_donor	30736198	30735023	.	-	.	gene_id "alternative_donor.928"; transcript_id "alternative_donor.928"; gene_name "CUFF.2303"; flanks "30736198-,30735023^"; structure "1^,2^"; splice_chain "30736198^,30735119^";
chr22	juncbase	intron_retention	51020678	51019089	.	-	.	gene_id "intron_retention.803"; transcript_id "intron_retention.803"; gene_name ""; flanks "51020678-,51019089^"; structure "0,1^2-"; splice_chain ",51020678^51019089-";
chr22	juncbase	alternative_donor	21832079	21830449	.	-	.	gene_id "alternative_donor.929"; transcript_id "alternative_donor.929"; gene_name ""; flanks "21832079-,21830449^"; structure "1^,2^"; splice_chain "21832079^,21830933^";
chr22	juncbase	jcn_only_AD	51018486	51018231	.	-	.	gene_id "jcn_only_AD.1111"; transcript_id "jcn_only_AD.1111"; gene_name "CUFF.2303"; flanks "51018486-,51018231^"; structure "1^,2^"; splice_chain "51018486^,51018403^";
chr22	juncbase	jcn_only_AA	29668420	29669730	.	+	.	gene_id "jcn_only_AA.879"; transcript_id "jcn_only_AA.879"; gene_name "CUFF.2278"; flanks "29668420-,29669730^"; structure "1-,2-"; splice_chain "29669727-,29669730-";
chr22	juncbase	jcn_only_AA	29668420	29674120	.	+	.	gene_id "jcn_only_AA.880"; transcript_id "jcn_only_AA.880"; gene_name "CUFF.2278"; flanks "29668420-,29674120^"; structure "1-,2-"; splice_chain "29669727-,29674120-";
chr22	juncbase	alternative_donor	21056997	21057294	.	+	.	gene_id "alternative_donor.930"; transcript_id "alternative_donor.930"; gene_name "CUFF.2263"; flanks "21056997-,21057294^"; structure "1^,2^"; splice_chain "21056997^,21057181^";
chr22	juncbase	alternative_acceptor	21830449	21832079	.	-	.	gene_id "alternative_acceptor.668"; transcript_id "alternative_acceptor.668"; gene_name "CUFF.2266"; flanks "21830449-,21832079^"; structure "1-,2-"; splice_chain "21831053-,21830449-";
chr22	juncbase	alternative_donor	37705364	37707029	.	+	.	gene_id "alternative_donor.931"; transcript_id "alternative_donor.931"; gene_name "CUFF.2288"; flanks "37705364-,37707029^"; structure "1^,2^"; splice_chain "37705364^,37706073^";
chr22	juncbase	cassette	18095578	18082861	.	-	.	gene_id "cassette.520"; transcript_id "cassette.520"; gene_name "CUFF.2255"; flanks "18095578-,18082861^"; structure "0,1-2^"; splice_chain ",18083947-18083858^";
chr22	juncbase	intron_retention	21830291	21829589	.	-	.	gene_id "intron_retention.804"; transcript_id "intron_retention.804"; gene_name ""; flanks "21830291-,21829589^"; structure "0,1^2-"; splice_chain ",21830291^21829589-";
chr22	juncbase	alternative_donor	21058328	21058476	.	+	.	gene_id "alternative_donor.932"; transcript_id "alternative_donor.932"; gene_name "CUFF.2263"; flanks "21058328-,21058476^"; structure "1^,2^"; splice_chain "21058328^,21058344^";
chr22	juncbase	alternative_acceptor	25855482	25905150	.	+	.	gene_id "alternative_acceptor.669"; transcript_id "alternative_acceptor.669"; gene_name "CUFF.2288"; flanks "25855482-,25905150^"; structure "1-,2-"; splice_chain "25856834-,25905150-";
chr22	juncbase	alternative_acceptor	25855482	25915890	.	+	.	gene_id "alternative_acceptor.670"; transcript_id "alternative_acceptor.670"; gene_name "CUFF.2288"; flanks "25855482-,25915890^"; structure "1-,2-"; splice_chain "25856834-,25915890-";
chr22	juncbase	cassette	47158745	47188417	.	+	.	gene_id "cassette.521"; transcript_id "cassette.521"; gene_name "CUFF.2295"; flanks "47158745-,47188417^"; structure "0,1-2^"; splice_chain ",47185209-47185368^";
chr22	juncbase	jcn_only_AA	29668420	29669727	.	+	.	gene_id "jcn_only_AA.881"; transcript_id "jcn_only_AA.881"; gene_name "CUFF.2278"; flanks "29668420-,29669727^"; structure "1-,2-"; splice_chain "29669727-,29669730-";
chr22	juncbase	jcn_only_AA	29668420	29674120	.	+	.	gene_id "jcn_only_AA.882"; transcript_id "jcn_only_AA.882"; gene_name "CUFF.2278"; flanks "29668420-,29674120^"; structure "1-,2-"; splice_chain "29669730-,29674120-";
chr22	juncbase	alternative_donor	21871614	21846383	.	-	.	gene_id "alternative_donor.933"; transcript_id "alternative_donor.933"; gene_name ""; flanks "21871614-,21846383^"; structure "1^,2^"; splice_chain "21871614^,21868423^";
chr22	juncbase	alternative_acceptor	47308084	47370186	.	+	.	gene_id "alternative_acceptor.671"; transcript_id "alternative_acceptor.671"; gene_name "CUFF.2295"; flanks "47308084-,47370186^"; structure "1-,2-"; splice_chain "47309230-,47370186-";
chr22	juncbase	intron_retention	45244940	45255611	.	+	.	gene_id "intron_retention.805"; transcript_id "intron_retention.805"; gene_name ""; flanks "45244940-,45255611^"; structure "0,1^2-"; splice_chain ",45244940^45255611-";
chr22	juncbase	alternative_donor	24717291	24720188	.	+	.	gene_id "alternative_donor.934"; transcript_id "alternative_donor.934"; gene_name "CUFF.2270"; flanks "24717291-,24720188^"; structure "1^,2^"; splice_chain "24717291^,24718886^";
chr22	juncbase	jcn_only_AA	37695347	37696194	.	+	.	gene_id "jcn_only_AA.883"; transcript_id "jcn_only_AA.883"; gene_name ""; flanks "37695347-,37696194^"; structure "1-,2-"; splice_chain "37696194-,37696948-";
chr22	juncbase	jcn_only_AA	37695347	37696111	.	+	.	gene_id "jcn_only_AA.884"; transcript_id "jcn_only_AA.884"; gene_name ""; flanks "37695347-,37696111^"; structure "1-,2-"; splice_chain "37696111-,37696948-";
chr22	juncbase	cassette	45244940	45258155	.	+	.	gene_id "cassette.522"; transcript_id "cassette.522"; gene_name "CUFF.2292"; flanks "45244940-,45258155^"; structure "0,1-2^"; splice_chain ",45255611-45255714^";
chr22	juncbase	cassette	21057410	21057921	.	+	.	gene_id "cassette.523"; transcript_id "cassette.523"; gene_name "CUFF.2263"; flanks "21057410-,21057921^"; structure "0,1-2^"; splice_chain ",21057756-21057812^";
chr22	juncbase	alternative_acceptor	29684775	29687554	.	+	.	gene_id "alternative_acceptor.672"; transcript_id "alternative_acceptor.672"; gene_name "CUFF.2278"; flanks "29684775-,29687554^"; structure "1-,2-"; splice_chain "29687551-,29687554-";
chr22	juncbase	alternative_acceptor	37695347	37696194	.	+	.	gene_id "alternative_acceptor.673"; transcript_id "alternative_acceptor.673"; gene_name "CUFF.2288"; flanks "37695347-,37696194^"; structure "1-,2-"; splice_chain "37696111-,37696194-";
chr22	juncbase	alternative_acceptor	37695347	37696948	.	+	.	gene_id "alternative_acceptor.674"; transcript_id "alternative_acceptor.674"; gene_name "CUFF.2288"; flanks "37695347-,37696948^"; structure "1-,2-"; splice_chain "37696111-,37696948-";
chr22	juncbase	intron_retention	29694885	29695224	.	+	.	gene_id "intron_retention.806"; transcript_id "intron_retention.806"; gene_name "CUFF.2278"; flanks "29694885-,29695224^"; structure "0,1^2-"; splice_chain ",29694885^29695224-";
chr22	juncbase	jcn_only_AA	29521404	29533490	.	+	.	gene_id "jcn_only_AA.885"; transcript_id "jcn_only_AA.885"; gene_name "CUFF.2277"; flanks "29521404-,29533490^"; structure "1-,2-"; splice_chain "29533330-,29533490-";
chr22	juncbase	alternative_donor	29695270	29695589	.	+	.	gene_id "alternative_donor.935"; transcript_id "alternative_donor.935"; gene_name "CUFF.2278"; flanks "29695270-,29695589^"; structure "1^,2^"; splice_chain "29695270^,29695321^";
chr22	juncbase	cassette	45198044	45210552	.	+	.	gene_id "cassette.524"; transcript_id "cassette.524"; gene_name "CUFF.2292"; flanks "45198044-,45210552^"; structure "0,1-2^"; splice_chain ",45204187-45204318^";
chr22	juncbase	alternative_acceptor	51009962	51010435	.	-	.	gene_id "alternative_acceptor.675"; transcript_id "alternative_acceptor.675"; gene_name "CUFF.2303"; flanks "51009962-,51010435^"; structure "1-,2-"; splice_chain "51009968-,51009962-";
chr22	juncbase	intron_retention	37707568	37708061	.	+	.	gene_id "intron_retention.807"; transcript_id "intron_retention.807"; gene_name "CUFF.2288"; flanks "37707568-,37708061^"; structure "0,1^2-"; splice_chain ",37707568^37708061-";
chr22	juncbase	jcn_only_AD	29469209	29490246	.	+	.	gene_id "jcn_only_AD.1112"; transcript_id "jcn_only_AD.1112"; gene_name "CUFF.2277"; flanks "29469209-,29490246^"; structure "1^,2^"; splice_chain "29469209^,29469215^";
chr22	juncbase	cassette	47158745	47189398	.	+	.	gene_id "cassette.525"; transcript_id "cassette.525"; gene_name "CUFF.2295"; flanks "47158745-,47189398^"; structure "0,1-2^"; splice_chain ",47188417-47188473^";
chr22	juncbase	intron_retention	21830281	21829589	.	-	.	gene_id "intron_retention.808"; transcript_id "intron_retention.808"; gene_name ""; flanks "21830281-,21829589^"; structure "0,1^2-"; splice_chain ",21830281^21829589-";
chr22	juncbase	jcn_only_AD	21871614	21846383	.	-	.	gene_id "jcn_only_AD.1113"; transcript_id "jcn_only_AD.1113"; gene_name ""; flanks "21871614-,21846383^"; structure "1^,2^"; splice_chain "21871614^,21868423^";
chr22	juncbase	alternative_acceptor	18096086	18102227	.	-	.	gene_id "alternative_acceptor.676"; transcript_id "alternative_acceptor.676"; gene_name "CUFF.2255"; flanks "18096086-,18102227^"; structure "1-,2-"; splice_chain "18101893-,18096086-";
chr22	juncbase	jcn_only_AA	21832390	21832874	.	-	.	gene_id "jcn_only_AA.886"; transcript_id "jcn_only_AA.886"; gene_name "CUFF.2266"; flanks "21832390-,21832874^"; structure "1-,2-"; splice_chain "21832450-,21832390-";
chr22	juncbase	intron_retention	29694885	29695185	.	+	.	gene_id "intron_retention.809"; transcript_id "intron_retention.809"; gene_name "CUFF.2278"; flanks "29694885-,29695185^"; structure "0,1^2-"; splice_chain ",29694885^29695185-";
chr22	juncbase	alternative_acceptor	37699443	37705253	.	+	.	gene_id "alternative_acceptor.677"; transcript_id "alternative_acceptor.677"; gene_name "CUFF.2278,CUFF.2288"; flanks "37699443-,37705253^"; structure "1-,2-"; splice_chain "37700213-,37705253-";
chr22	juncbase	jcn_only_AD	21823351	21823563	.	+	.	gene_id "jcn_only_AD.1114"; transcript_id "jcn_only_AD.1114"; gene_name ""; flanks "21823351-,21823563^"; structure "1^,2^"; splice_chain "21823351^,21823483^";
chr22	juncbase	alternative_acceptor	30735168	30752719	.	-	.	gene_id "alternative_acceptor.678"; transcript_id "alternative_acceptor.678"; gene_name "CUFF.2282"; flanks "30735168-,30752719^"; structure "1-,2-"; splice_chain "30749061-,30735168-";
chr22	juncbase	alternative_donor	21056594	21056874	.	+	.	gene_id "alternative_donor.936"; transcript_id "alternative_donor.936"; gene_name "CUFF.2263"; flanks "21056594-,21056874^"; structure "1^,2^"; splice_chain "21056594^,21056748^";
chr22	juncbase	cassette	20748952	20759667	.	+	.	gene_id "cassette.526"; transcript_id "cassette.526"; gene_name "CUFF.2260"; flanks "20748952-,20759667^"; structure "0,1-2^"; splice_chain ",20754922-20755048^";
chr22	juncbase	intron_retention	50920192	50920266	.	+	.	gene_id "intron_retention.810"; transcript_id "intron_retention.810"; gene_name ""; flanks "50920192-,50920266^"; structure "0,1^2-"; splice_chain ",50920192^50920266-";
chr22	juncbase	jcn_only_AA	29684775	29687554	.	+	.	gene_id "jcn_only_AA.887"; transcript_id "jcn_only_AA.887"; gene_name "CUFF.2278"; flanks "29684775-,29687554^"; structure "1-,2-"; splice_chain "29687551-,29687554-";
chr22	juncbase	jcn_only_AD	29695270	29695589	.	+	.	gene_id "jcn_only_AD.1115"; transcript_id "jcn_only_AD.1115"; gene_name "CUFF.2278"; flanks "29695270-,29695589^"; structure "1^,2^"; splice_chain "29695270^,29695321^";
chr22	juncbase	cassette	45182486	45204187	.	+	.	gene_id "cassette.527"; transcript_id "cassette.527"; gene_name "CUFF.2292"; flanks "45182486-,45204187^"; structure "0,1-2^"; splice_chain ",45197957-45198044^";
chr22	juncbase	jcn_only_AA	51012144	51012764	.	-	.	gene_id "jcn_only_AA.888"; transcript_id "jcn_only_AA.888"; gene_name "CUFF.2303"; flanks "51012144-,51012764^"; structure "1-,2-"; splice_chain "51012350-,51012144-";
chr22	juncbase	intron_retention	51020678	51020291	.	-	.	gene_id "intron_retention.811"; transcript_id "intron_retention.811"; gene_name "CUFF.2303"; flanks "51020678-,51020291^"; structure "0,1^2-"; splice_chain ",51020678^51020291-";
chr22	juncbase	jcn_only_AD	21832079	21830449	.	-	.	gene_id "jcn_only_AD.1116"; transcript_id "jcn_only_AD.1116"; gene_name ""; flanks "21832079-,21830449^"; structure "1^,2^"; splice_chain "21832079^,21830933^";
chr22	juncbase	jcn_only_AA	51009962	51010435	.	-	.	gene_id "jcn_only_AA.889"; transcript_id "jcn_only_AA.889"; gene_name "CUFF.2303"; flanks "51009962-,51010435^"; structure "1-,2-"; splice_chain "51009968-,51009962-";
chr22	juncbase	intron_retention	21057181	21057294	.	+	.	gene_id "intron_retention.812"; transcript_id "intron_retention.812"; gene_name ""; flanks "21057181-,21057294^"; structure "0,1^2-"; splice_chain ",21057181^21057294-";
chr22	juncbase	alternative_donor	51012764	51012144	.	-	.	gene_id "alternative_donor.937"; transcript_id "alternative_donor.937"; gene_name "CUFF.2303"; flanks "51012764-,51012144^"; structure "1^,2^"; splice_chain "51012764^,51012237^";
chr22	juncbase	intron_retention	51017465	51017088	.	-	.	gene_id "intron_retention.813"; transcript_id "intron_retention.813"; gene_name "CUFF.2303"; flanks "51017465-,51017088^"; structure "0,1^2-"; splice_chain ",51017465^51017088-";
chr22	juncbase	jcn_only_AD	29683123	29688126	.	+	.	gene_id "jcn_only_AD.1117"; transcript_id "jcn_only_AD.1117"; gene_name "CUFF.2278"; flanks "29683123-,29688126^"; structure "1^,2^"; splice_chain "29683123^,29687588^";
chr20	juncbase	alternative_donor	3172411	3171465	.	-	.	gene_id "alternative_donor.938"; transcript_id "alternative_donor.938"; gene_name "CUFF.2201"; flanks "3172411-,3171465^"; structure "1^,2^"; splice_chain "3172411^,3171836^";
chr20	juncbase	cassette	29978226	29966194	.	-	.	gene_id "cassette.528"; transcript_id "cassette.528"; gene_name "CUFF.2211"; flanks "29978226-,29966194^"; structure "0,1-2^"; splice_chain ",29976162-29976126^";
chr20	juncbase	intron_retention	33589888	33589980	.	+	.	gene_id "intron_retention.814"; transcript_id "intron_retention.814"; gene_name "CUFF.2221"; flanks "33589888-,33589980^"; structure "0,1^2-"; splice_chain ",33589888^33589980-";
chr20	juncbase	alternative_acceptor	33589888	33589980	.	+	.	gene_id "alternative_acceptor.679"; transcript_id "alternative_acceptor.679"; gene_name "CUFF.2210,CUFF.2221"; flanks "33589888-,33589980^"; structure "1-,2-"; splice_chain "33589962-,33589980-";
chr20	juncbase	cassette	30132838	30137867	.	+	.	gene_id "cassette.529"; transcript_id "cassette.529"; gene_name "CUFF.2210"; flanks "30132838-,30137867^"; structure "0,1-2^"; splice_chain ",30136832-30136917^";
chr20	juncbase	jcn_only_AA	34246904	34252801	.	-	.	gene_id "jcn_only_AA.890"; transcript_id "jcn_only_AA.890"; gene_name "CUFF.2227"; flanks "34246904-,34252801^"; structure "1-,2-"; splice_chain "34246936-,34246904-";
chr20	juncbase	jcn_only_AD	3172411	3171465	.	-	.	gene_id "jcn_only_AD.1118"; transcript_id "jcn_only_AD.1118"; gene_name "CUFF.2201"; flanks "3172411-,3171465^"; structure "1^,2^"; splice_chain "3172411^,3171836^";
chr20	juncbase	cassette	29978226	29965242	.	-	.	gene_id "cassette.530"; transcript_id "cassette.530"; gene_name "CUFF.2211"; flanks "29978226-,29965242^"; structure "0,1-2^"; splice_chain ",29966194-29966155^";
chr20	juncbase	jcn_only_AD	61992529	61991051	.	-	.	gene_id "jcn_only_AD.1119"; transcript_id "jcn_only_AD.1119"; gene_name "CUFF.2201"; flanks "61992529-,61991051^"; structure "1^,2^"; splice_chain "61992529^,61992442^";
chr20	juncbase	alternative_acceptor	30135409	30136480	.	+	.	gene_id "alternative_acceptor.680"; transcript_id "alternative_acceptor.680"; gene_name "CUFF.2232"; flanks "30135409-,30136480^"; structure "1-,2-"; splice_chain "30136183-,30136480-";
chr20	juncbase	cassette	61987327	61982379	.	-	.	gene_id "cassette.531"; transcript_id "cassette.531"; gene_name "CUFF.2235"; flanks "61987327-,61982379^"; structure "0,1-2^"; splice_chain ",61986947-61986848^";
chr20	juncbase	alternative_donor	30135409	30136480	.	+	.	gene_id "alternative_donor.939"; transcript_id "alternative_donor.939"; gene_name ""; flanks "30135409-,30136480^"; structure "1^,2^"; splice_chain "30135409^,30135495^";
chr20	juncbase	jcn_only_AD	30011623	30009481	.	-	.	gene_id "jcn_only_AD.1120"; transcript_id "jcn_only_AD.1120"; gene_name "CUFF.2212"; flanks "30011623-,30009481^"; structure "1^,2^"; splice_chain "30011623^,30011613^";
chr20	juncbase	jcn_only_AA	31097743	31099150	.	-	.	gene_id "jcn_only_AA.891"; transcript_id "jcn_only_AA.891"; gene_name "CUFF.2214"; flanks "31097743-,31099150^"; structure "1-,2-"; splice_chain "31097743-,31062545-";
chr20	juncbase	jcn_only_AA	31074604	31099150	.	-	.	gene_id "jcn_only_AA.892"; transcript_id "jcn_only_AA.892"; gene_name "CUFF.2214"; flanks "31074604-,31099150^"; structure "1-,2-"; splice_chain "31074604-,31062545-";
chr20	juncbase	intron_retention	2844729	2844825	.	+	.	gene_id "intron_retention.815"; transcript_id "intron_retention.815"; gene_name "CUFF.2200"; flanks "2844729-,2844825^"; structure "0,1^2-"; splice_chain ",2844729^2844825-";
chr20	juncbase	intron_retention	30136596	30136832	.	+	.	gene_id "intron_retention.816"; transcript_id "intron_retention.816"; gene_name ""; flanks "30136596-,30136832^"; structure "0,1^2-"; splice_chain ",30136596^30136832-";
chr20	juncbase	alternative_donor	33567607	33568381	.	+	.	gene_id "alternative_donor.940"; transcript_id "alternative_donor.940"; gene_name "CUFF.2221"; flanks "33567607-,33568381^"; structure "1^,2^"; splice_chain "33567607^,33568282^";
chr20	juncbase	intron_retention	2843356	2843453	.	+	.	gene_id "intron_retention.817"; transcript_id "intron_retention.817"; gene_name "CUFF.2200"; flanks "2843356-,2843453^"; structure "0,1^2-"; splice_chain ",2843356^2843453-";
chr20	juncbase	jcn_only_AA	31115716	31123244	.	-	.	gene_id "jcn_only_AA.893"; transcript_id "jcn_only_AA.893"; gene_name "CUFF.2214"; flanks "31115716-,31123244^"; structure "1-,2-"; splice_chain "31121288-,31115716-";
chr20	juncbase	alternative_donor	30132838	30136832	.	+	.	gene_id "alternative_donor.941"; transcript_id "alternative_donor.941"; gene_name "CUFF.2210"; flanks "30132838-,30136832^"; structure "1^,2^"; splice_chain "30132838^,30136596^";
chr20	juncbase	intron_retention	30135409	30136480	.	+	.	gene_id "intron_retention.818"; transcript_id "intron_retention.818"; gene_name ""; flanks "30135409-,30136480^"; structure "0,1^2-"; splice_chain ",30135409^30136480-";
chr20	juncbase	alternative_donor	33114148	33122432	.	+	.	gene_id "alternative_donor.942"; transcript_id "alternative_donor.942"; gene_name "CUFF.2220"; flanks "33114148-,33122432^"; structure "1^,2^"; splice_chain "33114148^,33118038^";
chr20	juncbase	cassette	21284111	21307128	.	+	.	gene_id "cassette.532"; transcript_id "cassette.532"; gene_name "CUFF.2208"; flanks "21284111-,21307128^"; structure "0,1-2^"; splice_chain ",21306917-21307044^";
chr20	juncbase	alternative_donor	21284111	21306917	.	+	.	gene_id "alternative_donor.943"; transcript_id "alternative_donor.943"; gene_name "CUFF.2208"; flanks "21284111-,21306917^"; structure "1^,2^"; splice_chain "21284111^,21284485^";
chr20	juncbase	intron_retention	33589152	33589234	.	+	.	gene_id "intron_retention.819"; transcript_id "intron_retention.819"; gene_name "CUFF.2221"; flanks "33589152-,33589234^"; structure "0,1^2-"; splice_chain ",33589152^33589234-";
chr20	juncbase	jcn_only_AA	31062545	31099150	.	-	.	gene_id "jcn_only_AA.894"; transcript_id "jcn_only_AA.894"; gene_name "CUFF.2214"; flanks "31062545-,31099150^"; structure "1-,2-"; splice_chain "31097743-,31062545-";
chr20	juncbase	jcn_only_AA	31074604	31099150	.	-	.	gene_id "jcn_only_AA.895"; transcript_id "jcn_only_AA.895"; gene_name "CUFF.2214"; flanks "31074604-,31099150^"; structure "1-,2-"; splice_chain "31097743-,31074604-";
chr20	juncbase	jcn_only_AD	30135409	30136480	.	+	.	gene_id "jcn_only_AD.1121"; transcript_id "jcn_only_AD.1121"; gene_name ""; flanks "30135409-,30136480^"; structure "1^,2^"; splice_chain "30135409^,30135495^";
chr20	juncbase	jcn_only_AD	21284111	21306917	.	+	.	gene_id "jcn_only_AD.1122"; transcript_id "jcn_only_AD.1122"; gene_name "CUFF.2208"; flanks "21284111-,21306917^"; structure "1^,2^"; splice_chain "21284111^,21284485^";
chr20	juncbase	jcn_only_AD	34252801	34246936	.	-	.	gene_id "jcn_only_AD.1123"; transcript_id "jcn_only_AD.1123"; gene_name "CUFF.2227"; flanks "34252801-,34246936^"; structure "1^,2^"; splice_chain "34252801^,34252724^";
chr20	juncbase	alternative_acceptor	1517956	1532337	.	-	.	gene_id "alternative_acceptor.681"; transcript_id "alternative_acceptor.681"; gene_name "CUFF.2199"; flanks "1517956-,1532337^"; structure "1-,2-"; splice_chain "1517959-,1517956-";
chr20	juncbase	cassette	30137924	30147414	.	+	.	gene_id "cassette.533"; transcript_id "cassette.533"; gene_name "CUFF.2210"; flanks "30137924-,30147414^"; structure "0,1-2^"; splice_chain ",30142549-30142632^";
chr20	juncbase	intron_retention	30137924	30142549	.	+	.	gene_id "intron_retention.820"; transcript_id "intron_retention.820"; gene_name "CUFF.2210"; flanks "30137924-,30142549^"; structure "0,1^2-"; splice_chain ",30137924^30142549-";
chr20	juncbase	alternative_acceptor	31115716	31123244	.	-	.	gene_id "alternative_acceptor.682"; transcript_id "alternative_acceptor.682"; gene_name "CUFF.2214"; flanks "31115716-,31123244^"; structure "1-,2-"; splice_chain "31121288-,31115716-";
chr20	juncbase	jcn_only_AA	31115716	31172372	.	-	.	gene_id "jcn_only_AA.896"; transcript_id "jcn_only_AA.896"; gene_name "CUFF.2214"; flanks "31115716-,31172372^"; structure "1-,2-"; splice_chain "31136688-,31115716-";
chr20	juncbase	alternative_acceptor	16730119	16744967	.	+	.	gene_id "alternative_acceptor.683"; transcript_id "alternative_acceptor.683"; gene_name ""; flanks "16730119-,16744967^"; structure "1-,2-"; splice_chain "16730412-,16744967-";
chr20	juncbase	jcn_only_AA	2842350	2843711	.	+	.	gene_id "jcn_only_AA.897"; transcript_id "jcn_only_AA.897"; gene_name ""; flanks "2842350-,2843711^"; structure "1-,2-"; splice_chain "2842451-,2843711-";
chr20	juncbase	jcn_only_AD	30132838	30136832	.	+	.	gene_id "jcn_only_AD.1124"; transcript_id "jcn_only_AD.1124"; gene_name "CUFF.2210"; flanks "30132838-,30136832^"; structure "1^,2^"; splice_chain "30132838^,30136596^";
chr20	juncbase	cassette	30149539	30156923	.	+	.	gene_id "cassette.534"; transcript_id "cassette.534"; gene_name "CUFF.2210"; flanks "30149539-,30156923^"; structure "0,1-2^"; splice_chain ",30154013-30154098^";
chr20	juncbase	alternative_donor	34252801	34246936	.	-	.	gene_id "alternative_donor.944"; transcript_id "alternative_donor.944"; gene_name "CUFF.2227"; flanks "34252801-,34246936^"; structure "1^,2^"; splice_chain "34252801^,34252724^";
chr20	juncbase	alternative_donor	1532517	1517956	.	-	.	gene_id "alternative_donor.945"; transcript_id "alternative_donor.945"; gene_name "CUFF.2199"; flanks "1532517-,1517956^"; structure "1^,2^"; splice_chain "1532517^,1532337^";
chr20	juncbase	cassette	30115385	30125982	.	+	.	gene_id "cassette.535"; transcript_id "cassette.535"; gene_name "CUFF.2210"; flanks "30115385-,30125982^"; structure "0,1-2^"; splice_chain ",30115725-30115853^";
chr20	juncbase	alternative_donor	33589329	33589751	.	+	.	gene_id "alternative_donor.946"; transcript_id "alternative_donor.946"; gene_name "CUFF.2221"; flanks "33589329-,33589751^"; structure "1^,2^"; splice_chain "33589329^,33589395^";
chr20	juncbase	alternative_donor	33104266	33114073	.	+	.	gene_id "alternative_donor.947"; transcript_id "alternative_donor.947"; gene_name "CUFF.2220"; flanks "33104266-,33114073^"; structure "1^,2^"; splice_chain "33104266^,33104681^";
chr20	juncbase	alternative_acceptor	34246904	34252801	.	-	.	gene_id "alternative_acceptor.684"; transcript_id "alternative_acceptor.684"; gene_name "CUFF.2227"; flanks "34246904-,34252801^"; structure "1-,2-"; splice_chain "34246936-,34246904-";
chr20	juncbase	alternative_donor	61992529	61991051	.	-	.	gene_id "alternative_donor.948"; transcript_id "alternative_donor.948"; gene_name "CUFF.2201"; flanks "61992529-,61991051^"; structure "1^,2^"; splice_chain "61992529^,61992442^";
chr20	juncbase	jcn_only_AD	33104266	33114073	.	+	.	gene_id "jcn_only_AD.1125"; transcript_id "jcn_only_AD.1125"; gene_name "CUFF.2220"; flanks "33104266-,33114073^"; structure "1^,2^"; splice_chain "33104266^,33104681^";
chr20	juncbase	jcn_only_AD	33589329	33589751	.	+	.	gene_id "jcn_only_AD.1126"; transcript_id "jcn_only_AD.1126"; gene_name "CUFF.2221"; flanks "33589329-,33589751^"; structure "1^,2^"; splice_chain "33589329^,33589395^";
chr20	juncbase	jcn_only_AA	31097743	31099150	.	-	.	gene_id "jcn_only_AA.898"; transcript_id "jcn_only_AA.898"; gene_name "CUFF.2214"; flanks "31097743-,31099150^"; structure "1-,2-"; splice_chain "31097743-,31074604-";
chr20	juncbase	jcn_only_AA	31062545	31099150	.	-	.	gene_id "jcn_only_AA.899"; transcript_id "jcn_only_AA.899"; gene_name "CUFF.2214"; flanks "31062545-,31099150^"; structure "1-,2-"; splice_chain "31074604-,31062545-";
chr20	juncbase	jcn_only_AA	33589888	33589980	.	+	.	gene_id "jcn_only_AA.900"; transcript_id "jcn_only_AA.900"; gene_name "CUFF.2210,CUFF.2221"; flanks "33589888-,33589980^"; structure "1-,2-"; splice_chain "33589962-,33589980-";
chr20	juncbase	jcn_only_AD	1532517	1517956	.	-	.	gene_id "jcn_only_AD.1127"; transcript_id "jcn_only_AD.1127"; gene_name "CUFF.2199"; flanks "1532517-,1517956^"; structure "1^,2^"; splice_chain "1532517^,1532337^";
chr20	juncbase	intron_retention	33588961	33589048	.	+	.	gene_id "intron_retention.821"; transcript_id "intron_retention.821"; gene_name "CUFF.2221"; flanks "33588961-,33589048^"; structure "0,1^2-"; splice_chain ",33588961^33589048-";
chr20	juncbase	alternative_acceptor	31115716	31172372	.	-	.	gene_id "alternative_acceptor.685"; transcript_id "alternative_acceptor.685"; gene_name "CUFF.2214"; flanks "31115716-,31172372^"; structure "1-,2-"; splice_chain "31136688-,31115716-";
chr20	juncbase	alternative_donor	30011623	30009481	.	-	.	gene_id "alternative_donor.949"; transcript_id "alternative_donor.949"; gene_name "CUFF.2212"; flanks "30011623-,30009481^"; structure "1^,2^"; splice_chain "30011623^,30011613^";
chr20	juncbase	jcn_only_AD	33567607	33568381	.	+	.	gene_id "jcn_only_AD.1128"; transcript_id "jcn_only_AD.1128"; gene_name "CUFF.2221"; flanks "33567607-,33568381^"; structure "1^,2^"; splice_chain "33567607^,33568282^";
chr20	juncbase	jcn_only_AA	16730119	16744967	.	+	.	gene_id "jcn_only_AA.901"; transcript_id "jcn_only_AA.901"; gene_name ""; flanks "16730119-,16744967^"; structure "1-,2-"; splice_chain "16730412-,16744967-";
chr20	juncbase	jcn_only_AA	30135409	30136480	.	+	.	gene_id "jcn_only_AA.902"; transcript_id "jcn_only_AA.902"; gene_name "CUFF.2232"; flanks "30135409-,30136480^"; structure "1-,2-"; splice_chain "30136183-,30136480-";
chr20	juncbase	jcn_only_AD	33142153	32815999	.	-	.	gene_id "jcn_only_AD.1129"; transcript_id "jcn_only_AD.1129"; gene_name "CUFF.2212"; flanks "33142153-,32815999^"; structure "1^,2^"; splice_chain "33142153^,33087068^";
chr20	juncbase	cassette	30115385	30132750	.	+	.	gene_id "cassette.536"; transcript_id "cassette.536"; gene_name "CUFF.2210"; flanks "30115385-,30132750^"; structure "0,1-2^"; splice_chain ",30125982-30126064^";
chr20	juncbase	cassette	30154098	30156923	.	+	.	gene_id "cassette.537"; transcript_id "cassette.537"; gene_name "CUFF.2210"; flanks "30154098-,30156923^"; structure "0,1-2^"; splice_chain ",30155881-30156083^";
chr20	juncbase	cassette	30136917	30137867	.	+	.	gene_id "cassette.538"; transcript_id "cassette.538"; gene_name "CUFF.2210"; flanks "30136917-,30137867^"; structure "0,1-2^"; splice_chain ",30137010-30137135^";
chr20	juncbase	jcn_only_AD	33114148	33122432	.	+	.	gene_id "jcn_only_AD.1130"; transcript_id "jcn_only_AD.1130"; gene_name "CUFF.2220"; flanks "33114148-,33122432^"; structure "1^,2^"; splice_chain "33114148^,33118038^";
chr20	juncbase	jcn_only_AA	1517956	1532337	.	-	.	gene_id "jcn_only_AA.903"; transcript_id "jcn_only_AA.903"; gene_name "CUFF.2199"; flanks "1517956-,1532337^"; structure "1-,2-"; splice_chain "1517959-,1517956-";
chr20	juncbase	intron_retention	3172411	3171884	.	-	.	gene_id "intron_retention.822"; transcript_id "intron_retention.822"; gene_name "CUFF.2201"; flanks "3172411-,3171884^"; structure "0,1^2-"; splice_chain ",3172411^3171884-";
chr20	juncbase	intron_retention	33589888	33589962	.	+	.	gene_id "intron_retention.823"; transcript_id "intron_retention.823"; gene_name "CUFF.2221"; flanks "33589888-,33589962^"; structure "0,1^2-"; splice_chain ",33589888^33589962-";
chr21	juncbase	jcn_only_AD	47556893	47556408	.	-	.	gene_id "jcn_only_AD.1131"; transcript_id "jcn_only_AD.1131"; gene_name "CUFF.2254"; flanks "47556893-,47556408^"; structure "1^,2^"; splice_chain "47556899^,47556893^";
chr21	juncbase	jcn_only_AD	47556829	47556408	.	-	.	gene_id "jcn_only_AD.1132"; transcript_id "jcn_only_AD.1132"; gene_name "CUFF.2254"; flanks "47556829-,47556408^"; structure "1^,2^"; splice_chain "47556899^,47556829^";
chr21	juncbase	cassette	15695908	15709501	.	+	.	gene_id "cassette.539"; transcript_id "cassette.539"; gene_name "CUFF.2237"; flanks "15695908-,15709501^"; structure "0,1-2^"; splice_chain ",15708401-15708578^";
chr21	juncbase	cassette	47562023	47558560	.	-	.	gene_id "cassette.540"; transcript_id "cassette.540"; gene_name "CUFF.2254"; flanks "47562023-,47558560^"; structure "0,1-2^"; splice_chain ",47558837-47558794^";
chr21	juncbase	cassette	47565331	47558560	.	-	.	gene_id "cassette.541"; transcript_id "cassette.541"; gene_name "CUFF.2254"; flanks "47565331-,47558560^"; structure "0,1-2^"; splice_chain ",47558837-47558794^";
chr21	juncbase	jcn_only_AD	31015146	30971257	.	-	.	gene_id "jcn_only_AD.1133"; transcript_id "jcn_only_AD.1133"; gene_name "CUFF.2244"; flanks "31015146-,30971257^"; structure "1^,2^"; splice_chain "31015146^,30973548^";
chr21	juncbase	alternative_acceptor	15981889	15985197	.	-	.	gene_id "alternative_acceptor.686"; transcript_id "alternative_acceptor.686"; gene_name "CUFF.2239"; flanks "15981889-,15985197^"; structure "1-,2-"; splice_chain "15984966-,15981889-";
chr21	juncbase	jcn_only_AA	15680940	15685265	.	+	.	gene_id "jcn_only_AA.904"; transcript_id "jcn_only_AA.904"; gene_name "CUFF.2237"; flanks "15680940-,15685265^"; structure "1-,2-"; splice_chain "15681293-,15685265-";
chr21	juncbase	jcn_only_AA	47571894	47572821	.	-	.	gene_id "jcn_only_AA.905"; transcript_id "jcn_only_AA.905"; gene_name "CUFF.2254"; flanks "47571894-,47572821^"; structure "1-,2-"; splice_chain "47571919-,47571894-";
chr21	juncbase	jcn_only_AA	47556967	47557153	.	-	.	gene_id "jcn_only_AA.906"; transcript_id "jcn_only_AA.906"; gene_name "CUFF.2254"; flanks "47556967-,47557153^"; structure "1-,2-"; splice_chain "47556987-,47556967-";
chr21	juncbase	alternative_acceptor	40977929	40981510	.	-	.	gene_id "alternative_acceptor.687"; transcript_id "alternative_acceptor.687"; gene_name "CUFF.2247"; flanks "40977929-,40981510^"; structure "1-,2-"; splice_chain "40978274-,40977929-";
chr21	juncbase	jcn_only_AA	15664068	15678017	.	+	.	gene_id "jcn_only_AA.907"; transcript_id "jcn_only_AA.907"; gene_name "CUFF.2237"; flanks "15664068-,15678017^"; structure "1-,2-"; splice_chain "15671759-,15678017-";
chr21	juncbase	alternative_donor	15685441	15688522	.	+	.	gene_id "alternative_donor.950"; transcript_id "alternative_donor.950"; gene_name "CUFF.2237"; flanks "15685441-,15688522^"; structure "1^,2^"; splice_chain "15685441^,15685452^";
chr21	juncbase	jcn_only_AD	47565331	47558837	.	-	.	gene_id "jcn_only_AD.1134"; transcript_id "jcn_only_AD.1134"; gene_name "CUFF.2254"; flanks "47565331-,47558837^"; structure "1^,2^"; splice_chain "47565331^,47562023^";
chr21	juncbase	intron_retention	15660867	15663891	.	+	.	gene_id "intron_retention.824"; transcript_id "intron_retention.824"; gene_name "CUFF.2237"; flanks "15660867-,15663891^"; structure "0,1^2-"; splice_chain ",15660867^15663891-";
chr21	juncbase	jcn_only_AD	47570033	47566241	.	-	.	gene_id "jcn_only_AD.1135"; transcript_id "jcn_only_AD.1135"; gene_name "CUFF.2244,CUFF.2254"; flanks "47570033-,47566241^"; structure "1^,2^"; splice_chain "47570033^,47566705^";
chr21	juncbase	jcn_only_AA	15660867	15663891	.	+	.	gene_id "jcn_only_AA.908"; transcript_id "jcn_only_AA.908"; gene_name "CUFF.2237"; flanks "15660867-,15663891^"; structure "1-,2-"; splice_chain "15663607-,15663891-";
chr21	juncbase	jcn_only_AD	47556893	47556408	.	-	.	gene_id "jcn_only_AD.1136"; transcript_id "jcn_only_AD.1136"; gene_name "CUFF.2247,CUFF.2254"; flanks "47556893-,47556408^"; structure "1^,2^"; splice_chain "47556893^,47556829^";
chr21	juncbase	jcn_only_AD	47556899	47556408	.	-	.	gene_id "jcn_only_AD.1137"; transcript_id "jcn_only_AD.1137"; gene_name "CUFF.2247,CUFF.2254"; flanks "47556899-,47556408^"; structure "1^,2^"; splice_chain "47556899^,47556829^";
chr21	juncbase	jcn_only_AD	15685441	15688522	.	+	.	gene_id "jcn_only_AD.1138"; transcript_id "jcn_only_AD.1138"; gene_name "CUFF.2237"; flanks "15685441-,15688522^"; structure "1^,2^"; splice_chain "15685441^,15685452^";
chr21	juncbase	alternative_donor	47556893	47556408	.	-	.	gene_id "alternative_donor.951"; transcript_id "alternative_donor.951"; gene_name "CUFF.2247,CUFF.2254"; flanks "47556893-,47556408^"; structure "1^,2^"; splice_chain "47556893^,47556829^";
chr21	juncbase	alternative_donor	47556899	47556408	.	-	.	gene_id "alternative_donor.952"; transcript_id "alternative_donor.952"; gene_name "CUFF.2247,CUFF.2254"; flanks "47556899-,47556408^"; structure "1^,2^"; splice_chain "47556899^,47556829^";
chr21	juncbase	intron_retention	15660867	15663607	.	+	.	gene_id "intron_retention.825"; transcript_id "intron_retention.825"; gene_name "CUFF.2237"; flanks "15660867-,15663607^"; structure "0,1^2-"; splice_chain ",15660867^15663607-";
chr21	juncbase	alternative_acceptor	15680940	15685265	.	+	.	gene_id "alternative_acceptor.688"; transcript_id "alternative_acceptor.688"; gene_name "CUFF.2237"; flanks "15680940-,15685265^"; structure "1-,2-"; splice_chain "15681293-,15685265-";
chr21	juncbase	alternative_acceptor	15664068	15678017	.	+	.	gene_id "alternative_acceptor.689"; transcript_id "alternative_acceptor.689"; gene_name "CUFF.2237"; flanks "15664068-,15678017^"; structure "1-,2-"; splice_chain "15671759-,15678017-";
chr21	juncbase	jcn_only_AD	43362256	43342194	.	-	.	gene_id "jcn_only_AD.1139"; transcript_id "jcn_only_AD.1139"; gene_name "CUFF.2250"; flanks "43362256-,43342194^"; structure "1^,2^"; splice_chain "43362256^,43346681^";
chr21	juncbase	alternative_donor	43362256	43342194	.	-	.	gene_id "alternative_donor.953"; transcript_id "alternative_donor.953"; gene_name "CUFF.2250"; flanks "43362256-,43342194^"; structure "1^,2^"; splice_chain "43362256^,43346681^";
chr21	juncbase	alternative_acceptor	15660867	15663891	.	+	.	gene_id "alternative_acceptor.690"; transcript_id "alternative_acceptor.690"; gene_name "CUFF.2237"; flanks "15660867-,15663891^"; structure "1-,2-"; splice_chain "15663607-,15663891-";
chr21	juncbase	jcn_only_AA	40977929	40981510	.	-	.	gene_id "jcn_only_AA.909"; transcript_id "jcn_only_AA.909"; gene_name "CUFF.2247"; flanks "40977929-,40981510^"; structure "1-,2-"; splice_chain "40978274-,40977929-";
chr21	juncbase	cassette	40178044	40181959	.	+	.	gene_id "cassette.542"; transcript_id "cassette.542"; gene_name "CUFF.2246"; flanks "40178044-,40181959^"; structure "0,1-2^"; splice_chain ",40178375-40178732^";
chr21	juncbase	alternative_donor	47556899	47556408	.	-	.	gene_id "alternative_donor.954"; transcript_id "alternative_donor.954"; gene_name "CUFF.2254"; flanks "47556899-,47556408^"; structure "1^,2^"; splice_chain "47556899^,47556893^";
chr21	juncbase	alternative_donor	47556829	47556408	.	-	.	gene_id "alternative_donor.955"; transcript_id "alternative_donor.955"; gene_name "CUFF.2254"; flanks "47556829-,47556408^"; structure "1^,2^"; splice_chain "47556893^,47556829^";
chr21	juncbase	alternative_acceptor	30934169	30949284	.	-	.	gene_id "alternative_acceptor.691"; transcript_id "alternative_acceptor.691"; gene_name "CUFF.2244"; flanks "30934169-,30949284^"; structure "1-,2-"; splice_chain "30934170-,30934169-";
chr21	juncbase	alternative_donor	15664068	15678017	.	+	.	gene_id "alternative_donor.956"; transcript_id "alternative_donor.956"; gene_name ""; flanks "15664068-,15678017^"; structure "1^,2^"; splice_chain "15664068^,15676681^";
chr21	juncbase	jcn_only_AD	15680940	15685265	.	+	.	gene_id "jcn_only_AD.1140"; transcript_id "jcn_only_AD.1140"; gene_name "CUFF.2237"; flanks "15680940-,15685265^"; structure "1^,2^"; splice_chain "15680940^,15681419^";
chr21	juncbase	cassette	30971150	30963545	.	-	.	gene_id "cassette.543"; transcript_id "cassette.543"; gene_name "CUFF.2244"; flanks "30971150-,30963545^"; structure "0,1-2^"; splice_chain ",30968890-30968846^";
chr21	juncbase	jcn_only_AA	15981889	15985197	.	-	.	gene_id "jcn_only_AA.910"; transcript_id "jcn_only_AA.910"; gene_name "CUFF.2239"; flanks "15981889-,15985197^"; structure "1-,2-"; splice_chain "15984966-,15981889-";
chr21	juncbase	alternative_acceptor	47571894	47572821	.	-	.	gene_id "alternative_acceptor.692"; transcript_id "alternative_acceptor.692"; gene_name "CUFF.2254"; flanks "47571894-,47572821^"; structure "1-,2-"; splice_chain "47571919-,47571894-";
chr21	juncbase	intron_retention	15646433	15646459	.	+	.	gene_id "intron_retention.826"; transcript_id "intron_retention.826"; gene_name "CUFF.2237"; flanks "15646433-,15646459^"; structure "0,1^2-"; splice_chain ",15646433^15646459-";
chr21	juncbase	jcn_only_AD	15664068	15678017	.	+	.	gene_id "jcn_only_AD.1141"; transcript_id "jcn_only_AD.1141"; gene_name ""; flanks "15664068-,15678017^"; structure "1^,2^"; splice_chain "15664068^,15676681^";
chr21	juncbase	alternative_donor	15680940	15685265	.	+	.	gene_id "alternative_donor.957"; transcript_id "alternative_donor.957"; gene_name "CUFF.2237"; flanks "15680940-,15685265^"; structure "1^,2^"; splice_chain "15680940^,15681419^";
chr21	juncbase	alternative_acceptor	47556967	47557153	.	-	.	gene_id "alternative_acceptor.693"; transcript_id "alternative_acceptor.693"; gene_name "CUFF.2254"; flanks "47556967-,47557153^"; structure "1-,2-"; splice_chain "47556987-,47556967-";
chr21	juncbase	jcn_only_AD	47556899	47556408	.	-	.	gene_id "jcn_only_AD.1142"; transcript_id "jcn_only_AD.1142"; gene_name "CUFF.2254"; flanks "47556899-,47556408^"; structure "1^,2^"; splice_chain "47556899^,47556893^";
chr21	juncbase	jcn_only_AD	47556829	47556408	.	-	.	gene_id "jcn_only_AD.1143"; transcript_id "jcn_only_AD.1143"; gene_name "CUFF.2254"; flanks "47556829-,47556408^"; structure "1^,2^"; splice_chain "47556893^,47556829^";
chr21	juncbase	cassette	30927373	30909706	.	-	.	gene_id "cassette.544"; transcript_id "cassette.544"; gene_name "CUFF.2244"; flanks "30927373-,30909706^"; structure "0,1-2^"; splice_chain ",30910205-30910119^";
chr21	juncbase	intron_retention	15688689	15689794	.	+	.	gene_id "intron_retention.827"; transcript_id "intron_retention.827"; gene_name ""; flanks "15688689-,15689794^"; structure "0,1^2-"; splice_chain ",15688689^15689794-";
chr21	juncbase	intron_retention	15985197	15984966	.	-	.	gene_id "intron_retention.828"; transcript_id "intron_retention.828"; gene_name ""; flanks "15985197-,15984966^"; structure "0,1^2-"; splice_chain ",15985197^15984966-";
chr21	juncbase	jcn_only_AA	30934169	30949284	.	-	.	gene_id "jcn_only_AA.911"; transcript_id "jcn_only_AA.911"; gene_name "CUFF.2244"; flanks "30934169-,30949284^"; structure "1-,2-"; splice_chain "30934170-,30934169-";
chr21	juncbase	alternative_donor	47556893	47556408	.	-	.	gene_id "alternative_donor.958"; transcript_id "alternative_donor.958"; gene_name "CUFF.2254"; flanks "47556893-,47556408^"; structure "1^,2^"; splice_chain "47556899^,47556893^";
chr21	juncbase	alternative_donor	47556829	47556408	.	-	.	gene_id "alternative_donor.959"; transcript_id "alternative_donor.959"; gene_name "CUFF.2254"; flanks "47556829-,47556408^"; structure "1^,2^"; splice_chain "47556899^,47556829^";
chr21	juncbase	alternative_donor	47570033	47566241	.	-	.	gene_id "alternative_donor.960"; transcript_id "alternative_donor.960"; gene_name "CUFF.2244,CUFF.2254"; flanks "47570033-,47566241^"; structure "1^,2^"; splice_chain "47570033^,47566705^";
chr7	juncbase	alternative_acceptor	30791920	30793350	.	+	.	gene_id "alternative_acceptor.694"; transcript_id "alternative_acceptor.694"; gene_name "CUFF.940"; flanks "30791920-,30793350^"; structure "1-,2-"; splice_chain "30793347-,30793350-";
chr7	juncbase	cassette	86594220	86574362	.	-	.	gene_id "cassette.545"; transcript_id "cassette.545"; gene_name "CUFF.970"; flanks "86594220-,86574362^"; structure "0,1-2^"; splice_chain ",86577238-86577043^";
chr7	juncbase	jcn_only_AA	156589186	156619299	.	-	.	gene_id "jcn_only_AA.912"; transcript_id "jcn_only_AA.912"; gene_name ""; flanks "156589186-,156619299^"; structure "1-,2-"; splice_chain "156616617-,156589186-";
chr7	juncbase	jcn_only_AD	86571334	86569431	.	-	.	gene_id "jcn_only_AD.1144"; transcript_id "jcn_only_AD.1144"; gene_name "CUFF.970"; flanks "86571334-,86569431^"; structure "1^,2^"; splice_chain "86571334^,86570668^";
chr7	juncbase	alternative_donor	73098231	73100966	.	+	.	gene_id "alternative_donor.961"; transcript_id "alternative_donor.961"; gene_name "CUFF.959"; flanks "73098231-,73100966^"; structure "1^,2^"; splice_chain "73098134^,73098231^";
chr7	juncbase	alternative_donor	73097713	73100966	.	+	.	gene_id "alternative_donor.962"; transcript_id "alternative_donor.962"; gene_name "CUFF.959"; flanks "73097713-,73100966^"; structure "1^,2^"; splice_chain "73097713^,73098134^";
chr7	juncbase	alternative_donor	73098330	73100966	.	+	.	gene_id "alternative_donor.963"; transcript_id "alternative_donor.963"; gene_name "CUFF.959"; flanks "73098330-,73100966^"; structure "1^,2^"; splice_chain "73098134^,73098330^";
chr7	juncbase	alternative_donor	73098253	73100966	.	+	.	gene_id "alternative_donor.964"; transcript_id "alternative_donor.964"; gene_name "CUFF.959"; flanks "73098253-,73100966^"; structure "1^,2^"; splice_chain "73098134^,73098253^";
chr7	juncbase	jcn_only_AD	136554165	136699567	.	+	.	gene_id "jcn_only_AD.1145"; transcript_id "jcn_only_AD.1145"; gene_name "CUFF.1027"; flanks "136554165-,136699567^"; structure "1^,2^"; splice_chain "136554165^,136677011^";
chr7	juncbase	jcn_only_AA	156516872	156526871	.	-	.	gene_id "jcn_only_AA.913"; transcript_id "jcn_only_AA.913"; gene_name ""; flanks "156516872-,156526871^"; structure "1-,2-"; splice_chain "156521414-,156516872-";
chr7	juncbase	jcn_only_AA	73106976	73107659	.	+	.	gene_id "jcn_only_AA.914"; transcript_id "jcn_only_AA.914"; gene_name ""; flanks "73106976-,73107659^"; structure "1-,2-"; splice_chain "73107659-,73111935-";
chr7	juncbase	jcn_only_AA	73106976	73277203	.	+	.	gene_id "jcn_only_AA.915"; transcript_id "jcn_only_AA.915"; gene_name ""; flanks "73106976-,73277203^"; structure "1-,2-"; splice_chain "73111935-,73277203-";
chr7	juncbase	intron_retention	127251999	127251902	.	-	.	gene_id "intron_retention.829"; transcript_id "intron_retention.829"; gene_name ""; flanks "127251999-,127251902^"; structure "0,1^2-"; splice_chain ",127251999^127251902-";
chr7	juncbase	jcn_only_AA	22357656	22396449	.	-	.	gene_id "jcn_only_AA.916"; transcript_id "jcn_only_AA.916"; gene_name "CUFF.939"; flanks "22357656-,22396449^"; structure "1-,2-"; splice_chain "22396230-,22357656-";
chr7	juncbase	cassette	150831655	150837066	.	+	.	gene_id "cassette.546"; transcript_id "cassette.546"; gene_name "CUFF.1033"; flanks "150831655-,150837066^"; structure "0,1-2^"; splice_chain ",150835230-150835400^";
chr7	juncbase	jcn_only_AA	73101425	73277203	.	+	.	gene_id "jcn_only_AA.917"; transcript_id "jcn_only_AA.917"; gene_name ""; flanks "73101425-,73277203^"; structure "1-,2-"; splice_chain "73106926-,73277203-";
chr7	juncbase	jcn_only_AA	73101425	73105246	.	+	.	gene_id "jcn_only_AA.918"; transcript_id "jcn_only_AA.918"; gene_name ""; flanks "73101425-,73105246^"; structure "1-,2-"; splice_chain "73105246-,73106926-";
chr7	juncbase	jcn_only_AD	111202520	111201979	.	-	.	gene_id "jcn_only_AD.1146"; transcript_id "jcn_only_AD.1146"; gene_name ""; flanks "111202520-,111201979^"; structure "1^,2^"; splice_chain "111202520^,111202500^";
chr7	juncbase	jcn_only_AD	73275596	73279323	.	+	.	gene_id "jcn_only_AD.1147"; transcript_id "jcn_only_AD.1147"; gene_name "CUFF.960"; flanks "73275596-,73279323^"; structure "1^,2^"; splice_chain "73275596^,73275921^";
chr7	juncbase	cassette	34724296	34851382	.	+	.	gene_id "cassette.547"; transcript_id "cassette.547"; gene_name "CUFF.942"; flanks "34724296-,34851382^"; structure "0,1-2^"; splice_chain ",34818107-34818177^";
chr7	juncbase	cassette	34724296	34867013	.	+	.	gene_id "cassette.548"; transcript_id "cassette.548"; gene_name "CUFF.942"; flanks "34724296-,34867013^"; structure "0,1-2^"; splice_chain ",34818107-34818177^";
chr7	juncbase	intron_retention	107591671	107580803	.	-	.	gene_id "intron_retention.830"; transcript_id "intron_retention.830"; gene_name ""; flanks "107591671-,107580803^"; structure "0,1^2-"; splice_chain ",107591671^107580803-";
chr7	juncbase	alternative_acceptor	127251730	127251999	.	-	.	gene_id "alternative_acceptor.695"; transcript_id "alternative_acceptor.695"; gene_name "CUFF.1019"; flanks "127251730-,127251999^"; structure "1-,2-"; splice_chain "127251902-,127251730-";
chr7	juncbase	alternative_donor	107254177	107258773	.	+	.	gene_id "alternative_donor.965"; transcript_id "alternative_donor.965"; gene_name "CUFF.988"; flanks "107254177-,107258773^"; structure "1^,2^"; splice_chain "107253877^,107254177^";
chr7	juncbase	alternative_donor	107256834	107258773	.	+	.	gene_id "alternative_donor.966"; transcript_id "alternative_donor.966"; gene_name "CUFF.988"; flanks "107256834-,107258773^"; structure "1^,2^"; splice_chain "107253877^,107256834^";
chr7	juncbase	alternative_acceptor	73275596	73279323	.	+	.	gene_id "alternative_acceptor.696"; transcript_id "alternative_acceptor.696"; gene_name "CUFF.960"; flanks "73275596-,73279323^"; structure "1-,2-"; splice_chain "73275799-,73279323-";
chr7	juncbase	jcn_only_AA	73101425	73277203	.	+	.	gene_id "jcn_only_AA.919"; transcript_id "jcn_only_AA.919"; gene_name ""; flanks "73101425-,73277203^"; structure "1-,2-"; splice_chain "73105246-,73277203-";
chr7	juncbase	jcn_only_AA	73101425	73106926	.	+	.	gene_id "jcn_only_AA.920"; transcript_id "jcn_only_AA.920"; gene_name ""; flanks "73101425-,73106926^"; structure "1-,2-"; splice_chain "73105246-,73106926-";
chr7	juncbase	cassette	107220746	107224327	.	+	.	gene_id "cassette.549"; transcript_id "cassette.549"; gene_name "CUFF.988"; flanks "107220746-,107224327^"; structure "0,1-2^"; splice_chain ",107221204-107221309^";
chr7	juncbase	jcn_only_AD	73098134	73105246	.	+	.	gene_id "jcn_only_AD.1148"; transcript_id "jcn_only_AD.1148"; gene_name ""; flanks "73098134-,73105246^"; structure "1^,2^"; splice_chain "73098134^,73101425^";
chr7	juncbase	jcn_only_AD	73101230	73105246	.	+	.	gene_id "jcn_only_AD.1149"; transcript_id "jcn_only_AD.1149"; gene_name ""; flanks "73101230-,73105246^"; structure "1^,2^"; splice_chain "73101230^,73101425^";
chr7	juncbase	jcn_only_AA	73108380	73111935	.	+	.	gene_id "jcn_only_AA.921"; transcript_id "jcn_only_AA.921"; gene_name ""; flanks "73108380-,73111935^"; structure "1-,2-"; splice_chain "73111796-,73111935-";
chr7	juncbase	jcn_only_AA	73108380	73110736	.	+	.	gene_id "jcn_only_AA.922"; transcript_id "jcn_only_AA.922"; gene_name ""; flanks "73108380-,73110736^"; structure "1-,2-"; splice_chain "73110736-,73111796-";
chr7	juncbase	intron_retention	75045308	75045381	.	+	.	gene_id "intron_retention.831"; transcript_id "intron_retention.831"; gene_name ""; flanks "75045308-,75045381^"; structure "0,1^2-"; splice_chain ",75045308^75045381-";
chr7	juncbase	alternative_donor	136554165	136676934	.	+	.	gene_id "alternative_donor.967"; transcript_id "alternative_donor.967"; gene_name ""; flanks "136554165-,136676934^"; structure "1^,2^"; splice_chain "136554165^,136635827^";
chr7	juncbase	jcn_only_AD	107254177	107258773	.	+	.	gene_id "jcn_only_AD.1150"; transcript_id "jcn_only_AD.1150"; gene_name "CUFF.988"; flanks "107254177-,107258773^"; structure "1^,2^"; splice_chain "107253877^,107254177^";
chr7	juncbase	jcn_only_AD	107256834	107258773	.	+	.	gene_id "jcn_only_AD.1151"; transcript_id "jcn_only_AD.1151"; gene_name "CUFF.988"; flanks "107256834-,107258773^"; structure "1^,2^"; splice_chain "107253877^,107256834^";
chr7	juncbase	jcn_only_AA	73106976	73277203	.	+	.	gene_id "jcn_only_AA.923"; transcript_id "jcn_only_AA.923"; gene_name ""; flanks "73106976-,73277203^"; structure "1-,2-"; splice_chain "73107659-,73277203-";
chr7	juncbase	jcn_only_AA	73106976	73111935	.	+	.	gene_id "jcn_only_AA.924"; transcript_id "jcn_only_AA.924"; gene_name ""; flanks "73106976-,73111935^"; structure "1-,2-"; splice_chain "73107659-,73111935-";
chr7	juncbase	intron_retention	107220811	107221204	.	+	.	gene_id "intron_retention.832"; transcript_id "intron_retention.832"; gene_name "CUFF.988"; flanks "107220811-,107221204^"; structure "0,1^2-"; splice_chain ",107220811^107221204-";
chr7	juncbase	alternative_acceptor	156469377	156471771	.	-	.	gene_id "alternative_acceptor.697"; transcript_id "alternative_acceptor.697"; gene_name "CUFF.1043"; flanks "156469377-,156471771^"; structure "1-,2-"; splice_chain "156471044-,156469377-";
chr7	juncbase	alternative_acceptor	156469318	156471771	.	-	.	gene_id "alternative_acceptor.698"; transcript_id "alternative_acceptor.698"; gene_name "CUFF.1043"; flanks "156469318-,156471771^"; structure "1-,2-"; splice_chain "156471044-,156469318-";
chr7	juncbase	intron_retention	129028781	129028897	.	+	.	gene_id "intron_retention.833"; transcript_id "intron_retention.833"; gene_name ""; flanks "129028781-,129028897^"; structure "0,1^2-"; splice_chain ",129028781^129028897-";
chr7	juncbase	jcn_only_AA	86541487	86542257	.	-	.	gene_id "jcn_only_AA.925"; transcript_id "jcn_only_AA.925"; gene_name "CUFF.970"; flanks "86541487-,86542257^"; structure "1-,2-"; splice_chain "86541561-,86541487-";
chr7	juncbase	alternative_acceptor	136554165	136699567	.	+	.	gene_id "alternative_acceptor.699"; transcript_id "alternative_acceptor.699"; gene_name "CUFF.1027"; flanks "136554165-,136699567^"; structure "1-,2-"; splice_chain "136554552-,136699567-";
chr7	juncbase	alternative_acceptor	136554165	136635750	.	+	.	gene_id "alternative_acceptor.700"; transcript_id "alternative_acceptor.700"; gene_name "CUFF.1027"; flanks "136554165-,136635750^"; structure "1-,2-"; splice_chain "136554552-,136635750-";
chr7	juncbase	alternative_acceptor	136554165	136676934	.	+	.	gene_id "alternative_acceptor.701"; transcript_id "alternative_acceptor.701"; gene_name "CUFF.1027"; flanks "136554165-,136676934^"; structure "1-,2-"; splice_chain "136554552-,136676934-";
chr7	juncbase	alternative_donor	38948754	38937729	.	-	.	gene_id "alternative_donor.968"; transcript_id "alternative_donor.968"; gene_name "CUFF.948"; flanks "38948754-,38937729^"; structure "1^,2^"; splice_chain "38969072^,38948754^";
chr7	juncbase	alternative_donor	38971878	38937729	.	-	.	gene_id "alternative_donor.969"; transcript_id "alternative_donor.969"; gene_name "CUFF.948"; flanks "38971878-,38937729^"; structure "1^,2^"; splice_chain "38971878^,38969072^";
chr7	juncbase	jcn_only_AD	156529187	156526951	.	-	.	gene_id "jcn_only_AD.1152"; transcript_id "jcn_only_AD.1152"; gene_name ""; flanks "156529187-,156526951^"; structure "1^,2^"; splice_chain "156540618^,156529187^";
chr7	juncbase	jcn_only_AD	156549087	156526951	.	-	.	gene_id "jcn_only_AD.1153"; transcript_id "jcn_only_AD.1153"; gene_name ""; flanks "156549087-,156526951^"; structure "1^,2^"; splice_chain "156549087^,156540618^";
chr7	juncbase	jcn_only_AD	107256834	107258773	.	+	.	gene_id "jcn_only_AD.1154"; transcript_id "jcn_only_AD.1154"; gene_name "CUFF.988"; flanks "107256834-,107258773^"; structure "1^,2^"; splice_chain "107254177^,107256834^";
chr7	juncbase	jcn_only_AD	107253877	107258773	.	+	.	gene_id "jcn_only_AD.1155"; transcript_id "jcn_only_AD.1155"; gene_name "CUFF.988"; flanks "107253877-,107258773^"; structure "1^,2^"; splice_chain "107253877^,107254177^";
chr7	juncbase	intron_retention	156471771	156469318	.	-	.	gene_id "intron_retention.834"; transcript_id "intron_retention.834"; gene_name "CUFF.1043"; flanks "156471771-,156469318^"; structure "0,1^2-"; splice_chain ",156471771^156469318-";
chr7	juncbase	jcn_only_AA	6631498	6634066	.	+	.	gene_id "jcn_only_AA.926"; transcript_id "jcn_only_AA.926"; gene_name "CUFF.926,CUFF.964"; flanks "6631498-,6634066^"; structure "1-,2-"; splice_chain "6634043-,6634066-";
chr7	juncbase	alternative_donor	102252519	102251589	.	-	.	gene_id "alternative_donor.970"; transcript_id "alternative_donor.970"; gene_name "CUFF.983"; flanks "102252519-,102251589^"; structure "1^,2^"; splice_chain "102256970^,102252519^";
chr7	juncbase	alternative_donor	102257072	102251589	.	-	.	gene_id "alternative_donor.971"; transcript_id "alternative_donor.971"; gene_name "CUFF.983"; flanks "102257072-,102251589^"; structure "1^,2^"; splice_chain "102257072^,102256970^";
chr7	juncbase	jcn_only_AD	107236447	107240842	.	+	.	gene_id "jcn_only_AD.1156"; transcript_id "jcn_only_AD.1156"; gene_name "CUFF.988"; flanks "107236447-,107240842^"; structure "1^,2^"; splice_chain "107236447^,107240747^";
chr7	juncbase	jcn_only_AD	73098231	73100966	.	+	.	gene_id "jcn_only_AD.1157"; transcript_id "jcn_only_AD.1157"; gene_name "CUFF.959"; flanks "73098231-,73100966^"; structure "1^,2^"; splice_chain "73098231^,73098253^";
chr7	juncbase	jcn_only_AD	73097713	73100966	.	+	.	gene_id "jcn_only_AD.1158"; transcript_id "jcn_only_AD.1158"; gene_name "CUFF.959"; flanks "73097713-,73100966^"; structure "1^,2^"; splice_chain "73097713^,73098253^";
chr7	juncbase	jcn_only_AD	73098330	73100966	.	+	.	gene_id "jcn_only_AD.1159"; transcript_id "jcn_only_AD.1159"; gene_name "CUFF.959"; flanks "73098330-,73100966^"; structure "1^,2^"; splice_chain "73098253^,73098330^";
chr7	juncbase	jcn_only_AD	73098134	73100966	.	+	.	gene_id "jcn_only_AD.1160"; transcript_id "jcn_only_AD.1160"; gene_name "CUFF.959"; flanks "73098134-,73100966^"; structure "1^,2^"; splice_chain "73098134^,73098253^";
chr7	juncbase	alternative_donor	156626433	156619438	.	-	.	gene_id "alternative_donor.972"; transcript_id "alternative_donor.972"; gene_name ""; flanks "156626433-,156619438^"; structure "1^,2^"; splice_chain "156626447^,156626433^";
chr7	juncbase	alternative_donor	156685622	156619438	.	-	.	gene_id "alternative_donor.973"; transcript_id "alternative_donor.973"; gene_name ""; flanks "156685622-,156619438^"; structure "1^,2^"; splice_chain "156685622^,156626447^";
chr7	juncbase	intron_retention	75040009	75044163	.	+	.	gene_id "intron_retention.835"; transcript_id "intron_retention.835"; gene_name ""; flanks "75040009-,75044163^"; structure "0,1^2-"; splice_chain ",75040009^75044163-";
chr7	juncbase	alternative_donor	150815719	150817074	.	+	.	gene_id "alternative_donor.974"; transcript_id "alternative_donor.974"; gene_name "CUFF.1033"; flanks "150815719-,150817074^"; structure "1^,2^"; splice_chain "150815718^,150815719^";
chr7	juncbase	alternative_donor	150816341	150817074	.	+	.	gene_id "alternative_donor.975"; transcript_id "alternative_donor.975"; gene_name "CUFF.1033"; flanks "150816341-,150817074^"; structure "1^,2^"; splice_chain "150815718^,150816341^";
chr7	juncbase	intron_retention	107234550	107236312	.	+	.	gene_id "intron_retention.836"; transcript_id "intron_retention.836"; gene_name "CUFF.988"; flanks "107234550-,107236312^"; structure "0,1^2-"; splice_chain ",107234550^107236312-";
chr7	juncbase	intron_retention	107569857	107569650	.	-	.	gene_id "intron_retention.837"; transcript_id "intron_retention.837"; gene_name ""; flanks "107569857-,107569650^"; structure "0,1^2-"; splice_chain ",107569857^107569650-";
chr7	juncbase	alternative_donor	111030627	110603621	.	-	.	gene_id "alternative_donor.976"; transcript_id "alternative_donor.976"; gene_name "CUFF.995"; flanks "111030627-,110603621^"; structure "1^,2^"; splice_chain "111031894^,111030627^";
chr7	juncbase	alternative_donor	111127294	110603621	.	-	.	gene_id "alternative_donor.977"; transcript_id "alternative_donor.977"; gene_name "CUFF.995"; flanks "111127294-,110603621^"; structure "1^,2^"; splice_chain "111127294^,111031894^";
chr7	juncbase	intron_retention	6639523	6639758	.	+	.	gene_id "intron_retention.838"; transcript_id "intron_retention.838"; gene_name "CUFF.926"; flanks "6639523-,6639758^"; structure "0,1^2-"; splice_chain ",6639523^6639758-";
chr7	juncbase	jcn_only_AA	156556489	156629507	.	-	.	gene_id "jcn_only_AA.927"; transcript_id "jcn_only_AA.927"; gene_name "CUFF.1043"; flanks "156556489-,156629507^"; structure "1-,2-"; splice_chain "156627289-,156556489-";
chr7	juncbase	jcn_only_AA	156627269	156629507	.	-	.	gene_id "jcn_only_AA.928"; transcript_id "jcn_only_AA.928"; gene_name "CUFF.1043"; flanks "156627269-,156629507^"; structure "1-,2-"; splice_chain "156627289-,156627269-";
chr7	juncbase	jcn_only_AA	156626486	156629507	.	-	.	gene_id "jcn_only_AA.929"; transcript_id "jcn_only_AA.929"; gene_name "CUFF.1043"; flanks "156626486-,156629507^"; structure "1-,2-"; splice_chain "156627289-,156626486-";
chr7	juncbase	jcn_only_AA	107580803	107591671	.	-	.	gene_id "jcn_only_AA.930"; transcript_id "jcn_only_AA.930"; gene_name ""; flanks "107580803-,107591671^"; structure "1-,2-"; splice_chain "107583064-,107580803-";
chr7	juncbase	alternative_acceptor	136554165	136699567	.	+	.	gene_id "alternative_acceptor.702"; transcript_id "alternative_acceptor.702"; gene_name "CUFF.1027"; flanks "136554165-,136699567^"; structure "1-,2-"; splice_chain "136635750-,136699567-";
chr7	juncbase	alternative_acceptor	136554165	136676934	.	+	.	gene_id "alternative_acceptor.703"; transcript_id "alternative_acceptor.703"; gene_name "CUFF.1027"; flanks "136554165-,136676934^"; structure "1-,2-"; splice_chain "136635750-,136676934-";
chr7	juncbase	alternative_acceptor	136554165	136554552	.	+	.	gene_id "alternative_acceptor.704"; transcript_id "alternative_acceptor.704"; gene_name "CUFF.1027"; flanks "136554165-,136554552^"; structure "1-,2-"; splice_chain "136554552-,136635750-";
chr7	juncbase	alternative_donor	37025528	36934622	.	-	.	gene_id "alternative_donor.978"; transcript_id "alternative_donor.978"; gene_name "CUFF.944"; flanks "37025528-,36934622^"; structure "1^,2^"; splice_chain "37025528^,37024520^";
chr7	juncbase	alternative_donor	37052904	36934622	.	-	.	gene_id "alternative_donor.979"; transcript_id "alternative_donor.979"; gene_name "CUFF.944"; flanks "37052904-,36934622^"; structure "1^,2^"; splice_chain "37052904^,37024520^";
chr7	juncbase	intron_retention	100771764	100771810	.	+	.	gene_id "intron_retention.839"; transcript_id "intron_retention.839"; gene_name ""; flanks "100771764-,100771810^"; structure "0,1^2-"; splice_chain ",100771764^100771810-";
chr7	juncbase	alternative_donor	107214328	107215633	.	+	.	gene_id "alternative_donor.980"; transcript_id "alternative_donor.980"; gene_name "CUFF.987"; flanks "107214328-,107215633^"; structure "1^,2^"; splice_chain "107211711^,107214328^";
chr7	juncbase	alternative_donor	107214266	107215633	.	+	.	gene_id "alternative_donor.981"; transcript_id "alternative_donor.981"; gene_name "CUFF.987"; flanks "107214266-,107215633^"; structure "1^,2^"; splice_chain "107211711^,107214266^";
chr7	juncbase	alternative_donor	86550079	86548626	.	-	.	gene_id "alternative_donor.982"; transcript_id "alternative_donor.982"; gene_name ""; flanks "86550079-,86548626^"; structure "1^,2^"; splice_chain "86554844^,86550079^";
chr7	juncbase	alternative_donor	86549024	86548626	.	-	.	gene_id "alternative_donor.983"; transcript_id "alternative_donor.983"; gene_name ""; flanks "86549024-,86548626^"; structure "1^,2^"; splice_chain "86554844^,86549024^";
chr7	juncbase	cassette	6641771	6647168	.	+	.	gene_id "cassette.550"; transcript_id "cassette.550"; gene_name "CUFF.926"; flanks "6641771-,6647168^"; structure "0,1-2^"; splice_chain ",6642295-6642383^";
chr7	juncbase	jcn_only_AD	156540618	156526951	.	-	.	gene_id "jcn_only_AD.1161"; transcript_id "jcn_only_AD.1161"; gene_name ""; flanks "156540618-,156526951^"; structure "1^,2^"; splice_chain "156540618^,156529187^";
chr7	juncbase	jcn_only_AD	156549087	156526951	.	-	.	gene_id "jcn_only_AD.1162"; transcript_id "jcn_only_AD.1162"; gene_name ""; flanks "156549087-,156526951^"; structure "1^,2^"; splice_chain "156549087^,156529187^";
chr7	juncbase	intron_retention	107215755	107216854	.	+	.	gene_id "intron_retention.840"; transcript_id "intron_retention.840"; gene_name "CUFF.987"; flanks "107215755-,107216854^"; structure "0,1^2-"; splice_chain ",107215755^107216854-";
chr7	juncbase	cassette	107224427	107236312	.	+	.	gene_id "cassette.551"; transcript_id "cassette.551"; gene_name "CUFF.988"; flanks "107224427-,107236312^"; structure "0,1-2^"; splice_chain ",107234400-107234550^";
chr7	juncbase	intron_retention	107204692	107205033	.	+	.	gene_id "intron_retention.841"; transcript_id "intron_retention.841"; gene_name ""; flanks "107204692-,107205033^"; structure "0,1^2-"; splice_chain ",107204692^107205033-";
chr7	juncbase	jcn_only_AD	148982587	148984656	.	+	.	gene_id "jcn_only_AD.1163"; transcript_id "jcn_only_AD.1163"; gene_name "CUFF.1030"; flanks "148982587-,148984656^"; structure "1^,2^"; splice_chain "148982587^,148982787^";
chr7	juncbase	jcn_only_AA	102462650	102553533	.	-	.	gene_id "jcn_only_AA.931"; transcript_id "jcn_only_AA.931"; gene_name "CUFF.984"; flanks "102462650-,102553533^"; structure "1-,2-"; splice_chain "102524759-,102462650-";
chr7	juncbase	alternative_donor	92158238	92158790	.	+	.	gene_id "alternative_donor.984"; transcript_id "alternative_donor.984"; gene_name "CUFF.974"; flanks "92158238-,92158790^"; structure "1^,2^"; splice_chain "92158238^,92158497^";
chr7	juncbase	jcn_only_AD	73107999	73111935	.	+	.	gene_id "jcn_only_AD.1164"; transcript_id "jcn_only_AD.1164"; gene_name ""; flanks "73107999-,73111935^"; structure "1^,2^"; splice_chain "73106976^,73107999^";
chr7	juncbase	jcn_only_AD	73108380	73111935	.	+	.	gene_id "jcn_only_AD.1165"; transcript_id "jcn_only_AD.1165"; gene_name ""; flanks "73108380-,73111935^"; structure "1^,2^"; splice_chain "73106976^,73108380^";
chr7	juncbase	jcn_only_AD	73111846	73111935	.	+	.	gene_id "jcn_only_AD.1166"; transcript_id "jcn_only_AD.1166"; gene_name ""; flanks "73111846-,73111935^"; structure "1^,2^"; splice_chain "73106976^,73111846^";
chr7	juncbase	alternative_acceptor	7222451	7273934	.	+	.	gene_id "alternative_acceptor.705"; transcript_id "alternative_acceptor.705"; gene_name "CUFF.920,CUFF.932"; flanks "7222451-,7273934^"; structure "1-,2-"; splice_chain "7249058-,7273934-";
chr7	juncbase	jcn_only_AD	73105342	73106926	.	+	.	gene_id "jcn_only_AD.1167"; transcript_id "jcn_only_AD.1167"; gene_name ""; flanks "73105342-,73106926^"; structure "1^,2^"; splice_chain "73101425^,73105342^";
chr7	juncbase	jcn_only_AD	73101230	73106926	.	+	.	gene_id "jcn_only_AD.1168"; transcript_id "jcn_only_AD.1168"; gene_name ""; flanks "73101230-,73106926^"; structure "1^,2^"; splice_chain "73101230^,73101425^";
chr7	juncbase	alternative_donor	150784291	150813880	.	+	.	gene_id "alternative_donor.985"; transcript_id "alternative_donor.985"; gene_name "CUFF.1033"; flanks "150784291-,150813880^"; structure "1^,2^"; splice_chain "150784159^,150784291^";
chr7	juncbase	alternative_donor	150813737	150813880	.	+	.	gene_id "alternative_donor.986"; transcript_id "alternative_donor.986"; gene_name "CUFF.1033"; flanks "150813737-,150813880^"; structure "1^,2^"; splice_chain "150784159^,150813737^";
chr7	juncbase	alternative_donor	150783147	150813880	.	+	.	gene_id "alternative_donor.987"; transcript_id "alternative_donor.987"; gene_name "CUFF.1033"; flanks "150783147-,150813880^"; structure "1^,2^"; splice_chain "150783147^,150784159^";
chr7	juncbase	alternative_donor	150787634	150813880	.	+	.	gene_id "alternative_donor.988"; transcript_id "alternative_donor.988"; gene_name "CUFF.1033"; flanks "150787634-,150813880^"; structure "1^,2^"; splice_chain "150784159^,150787634^";
chr7	juncbase	alternative_donor	150809331	150813880	.	+	.	gene_id "alternative_donor.989"; transcript_id "alternative_donor.989"; gene_name "CUFF.1033"; flanks "150809331-,150813880^"; structure "1^,2^"; splice_chain "150784159^,150809331^";
chr7	juncbase	alternative_donor	150783096	150813880	.	+	.	gene_id "alternative_donor.990"; transcript_id "alternative_donor.990"; gene_name "CUFF.1033"; flanks "150783096-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150784159^";
chr7	juncbase	alternative_donor	150812728	150813880	.	+	.	gene_id "alternative_donor.991"; transcript_id "alternative_donor.991"; gene_name "CUFF.1033"; flanks "150812728-,150813880^"; structure "1^,2^"; splice_chain "150784159^,150812728^";
chr7	juncbase	jcn_only_AA	91730370	91732001	.	+	.	gene_id "jcn_only_AA.932"; transcript_id "jcn_only_AA.932"; gene_name "CUFF.972"; flanks "91730370-,91732001^"; structure "1-,2-"; splice_chain "91731908-,91732001-";
chr7	juncbase	cassette	37298786	37272799	.	-	.	gene_id "cassette.552"; transcript_id "cassette.552"; gene_name "CUFF.944"; flanks "37298786-,37272799^"; structure "0,1-2^"; splice_chain ",37283996-37283961^";
chr7	juncbase	jcn_only_AD	107214328	107215633	.	+	.	gene_id "jcn_only_AD.1169"; transcript_id "jcn_only_AD.1169"; gene_name "CUFF.987"; flanks "107214328-,107215633^"; structure "1^,2^"; splice_chain "107211711^,107214328^";
chr7	juncbase	jcn_only_AD	107214266	107215633	.	+	.	gene_id "jcn_only_AD.1170"; transcript_id "jcn_only_AD.1170"; gene_name "CUFF.987"; flanks "107214266-,107215633^"; structure "1^,2^"; splice_chain "107211711^,107214266^";
chr7	juncbase	jcn_only_AD	36934614	36901341	.	-	.	gene_id "jcn_only_AD.1171"; transcript_id "jcn_only_AD.1171"; gene_name ""; flanks "36934614-,36901341^"; structure "1^,2^"; splice_chain "36934614^,36909998^";
chr7	juncbase	jcn_only_AA	156476857	156516806	.	-	.	gene_id "jcn_only_AA.933"; transcript_id "jcn_only_AA.933"; gene_name ""; flanks "156476857-,156516806^"; structure "1-,2-"; splice_chain "156480885-,156476857-";
chr7	juncbase	jcn_only_AD	150784291	150813880	.	+	.	gene_id "jcn_only_AD.1172"; transcript_id "jcn_only_AD.1172"; gene_name "CUFF.1033"; flanks "150784291-,150813880^"; structure "1^,2^"; splice_chain "150784159^,150784291^";
chr7	juncbase	jcn_only_AD	150813737	150813880	.	+	.	gene_id "jcn_only_AD.1173"; transcript_id "jcn_only_AD.1173"; gene_name "CUFF.1033"; flanks "150813737-,150813880^"; structure "1^,2^"; splice_chain "150784159^,150813737^";
chr7	juncbase	jcn_only_AD	150783147	150813880	.	+	.	gene_id "jcn_only_AD.1174"; transcript_id "jcn_only_AD.1174"; gene_name "CUFF.1033"; flanks "150783147-,150813880^"; structure "1^,2^"; splice_chain "150783147^,150784159^";
chr7	juncbase	jcn_only_AD	150787634	150813880	.	+	.	gene_id "jcn_only_AD.1175"; transcript_id "jcn_only_AD.1175"; gene_name "CUFF.1033"; flanks "150787634-,150813880^"; structure "1^,2^"; splice_chain "150784159^,150787634^";
chr7	juncbase	jcn_only_AD	150809331	150813880	.	+	.	gene_id "jcn_only_AD.1176"; transcript_id "jcn_only_AD.1176"; gene_name "CUFF.1033"; flanks "150809331-,150813880^"; structure "1^,2^"; splice_chain "150784159^,150809331^";
chr7	juncbase	jcn_only_AD	150783096	150813880	.	+	.	gene_id "jcn_only_AD.1177"; transcript_id "jcn_only_AD.1177"; gene_name "CUFF.1033"; flanks "150783096-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150784159^";
chr7	juncbase	jcn_only_AD	150812728	150813880	.	+	.	gene_id "jcn_only_AD.1178"; transcript_id "jcn_only_AD.1178"; gene_name "CUFF.1033"; flanks "150812728-,150813880^"; structure "1^,2^"; splice_chain "150784159^,150812728^";
chr7	juncbase	alternative_donor	73098231	73100966	.	+	.	gene_id "alternative_donor.992"; transcript_id "alternative_donor.992"; gene_name "CUFF.959"; flanks "73098231-,73100966^"; structure "1^,2^"; splice_chain "73098231^,73098253^";
chr7	juncbase	alternative_donor	73097713	73100966	.	+	.	gene_id "alternative_donor.993"; transcript_id "alternative_donor.993"; gene_name "CUFF.959"; flanks "73097713-,73100966^"; structure "1^,2^"; splice_chain "73097713^,73098253^";
chr7	juncbase	alternative_donor	73098330	73100966	.	+	.	gene_id "alternative_donor.994"; transcript_id "alternative_donor.994"; gene_name "CUFF.959"; flanks "73098330-,73100966^"; structure "1^,2^"; splice_chain "73098253^,73098330^";
chr7	juncbase	alternative_donor	73098134	73100966	.	+	.	gene_id "alternative_donor.995"; transcript_id "alternative_donor.995"; gene_name "CUFF.959"; flanks "73098134-,73100966^"; structure "1^,2^"; splice_chain "73098134^,73098253^";
chr7	juncbase	jcn_only_AA	74981240	74982816	.	-	.	gene_id "jcn_only_AA.934"; transcript_id "jcn_only_AA.934"; gene_name "CUFF.963"; flanks "74981240-,74982816^"; structure "1-,2-"; splice_chain "74982649-,74981240-";
chr7	juncbase	jcn_only_AD	136553864	136554008	.	+	.	gene_id "jcn_only_AD.1179"; transcript_id "jcn_only_AD.1179"; gene_name "CUFF.1027"; flanks "136553864-,136554008^"; structure "1^,2^"; splice_chain "136553864^,136553920^";
chr7	juncbase	cassette	102495224	102462650	.	-	.	gene_id "cassette.553"; transcript_id "cassette.553"; gene_name "CUFF.984"; flanks "102495224-,102462650^"; structure "0,1-2^"; splice_chain ",102473421-102473287^";
chr7	juncbase	alternative_donor	111031894	110603621	.	-	.	gene_id "alternative_donor.996"; transcript_id "alternative_donor.996"; gene_name "CUFF.995"; flanks "111031894-,110603621^"; structure "1^,2^"; splice_chain "111031894^,111030627^";
chr7	juncbase	alternative_donor	111127294	110603621	.	-	.	gene_id "alternative_donor.997"; transcript_id "alternative_donor.997"; gene_name "CUFF.995"; flanks "111127294-,110603621^"; structure "1^,2^"; splice_chain "111127294^,111030627^";
chr7	juncbase	jcn_only_AD	102256970	102251589	.	-	.	gene_id "jcn_only_AD.1180"; transcript_id "jcn_only_AD.1180"; gene_name ""; flanks "102256970-,102251589^"; structure "1^,2^"; splice_chain "102257072^,102256970^";
chr7	juncbase	jcn_only_AD	102252519	102251589	.	-	.	gene_id "jcn_only_AD.1181"; transcript_id "jcn_only_AD.1181"; gene_name ""; flanks "102252519-,102251589^"; structure "1^,2^"; splice_chain "102257072^,102252519^";
chr7	juncbase	alternative_acceptor	91730370	91732001	.	+	.	gene_id "alternative_acceptor.706"; transcript_id "alternative_acceptor.706"; gene_name "CUFF.972"; flanks "91730370-,91732001^"; structure "1-,2-"; splice_chain "91731908-,91732001-";
chr7	juncbase	intron_retention	107643556	107643416	.	-	.	gene_id "intron_retention.842"; transcript_id "intron_retention.842"; gene_name ""; flanks "107643556-,107643416^"; structure "0,1^2-"; splice_chain ",107643556^107643416-";
chr7	juncbase	intron_retention	107204654	107205033	.	+	.	gene_id "intron_retention.843"; transcript_id "intron_retention.843"; gene_name "CUFF.987"; flanks "107204654-,107205033^"; structure "0,1^2-"; splice_chain ",107204654^107205033-";
chr7	juncbase	alternative_donor	136553864	136554008	.	+	.	gene_id "alternative_donor.998"; transcript_id "alternative_donor.998"; gene_name "CUFF.1027"; flanks "136553864-,136554008^"; structure "1^,2^"; splice_chain "136553864^,136553920^";
chr7	juncbase	alternative_donor	73098231	73100966	.	+	.	gene_id "alternative_donor.999"; transcript_id "alternative_donor.999"; gene_name "CUFF.959"; flanks "73098231-,73100966^"; structure "1^,2^"; splice_chain "73097713^,73098231^";
chr7	juncbase	alternative_donor	73098330	73100966	.	+	.	gene_id "alternative_donor.1000"; transcript_id "alternative_donor.1000"; gene_name "CUFF.959"; flanks "73098330-,73100966^"; structure "1^,2^"; splice_chain "73097713^,73098330^";
chr7	juncbase	alternative_donor	73098253	73100966	.	+	.	gene_id "alternative_donor.1001"; transcript_id "alternative_donor.1001"; gene_name "CUFF.959"; flanks "73098253-,73100966^"; structure "1^,2^"; splice_chain "73097713^,73098253^";
chr7	juncbase	alternative_donor	73098134	73100966	.	+	.	gene_id "alternative_donor.1002"; transcript_id "alternative_donor.1002"; gene_name "CUFF.959"; flanks "73098134-,73100966^"; structure "1^,2^"; splice_chain "73097713^,73098134^";
chr7	juncbase	alternative_donor	150784159	150813880	.	+	.	gene_id "alternative_donor.1003"; transcript_id "alternative_donor.1003"; gene_name "CUFF.1033"; flanks "150784159-,150813880^"; structure "1^,2^"; splice_chain "150784159^,150784291^";
chr7	juncbase	alternative_donor	150813737	150813880	.	+	.	gene_id "alternative_donor.1004"; transcript_id "alternative_donor.1004"; gene_name "CUFF.1033"; flanks "150813737-,150813880^"; structure "1^,2^"; splice_chain "150784291^,150813737^";
chr7	juncbase	alternative_donor	150783147	150813880	.	+	.	gene_id "alternative_donor.1005"; transcript_id "alternative_donor.1005"; gene_name "CUFF.1033"; flanks "150783147-,150813880^"; structure "1^,2^"; splice_chain "150783147^,150784291^";
chr7	juncbase	alternative_donor	150787634	150813880	.	+	.	gene_id "alternative_donor.1006"; transcript_id "alternative_donor.1006"; gene_name "CUFF.1033"; flanks "150787634-,150813880^"; structure "1^,2^"; splice_chain "150784291^,150787634^";
chr7	juncbase	alternative_donor	150809331	150813880	.	+	.	gene_id "alternative_donor.1007"; transcript_id "alternative_donor.1007"; gene_name "CUFF.1033"; flanks "150809331-,150813880^"; structure "1^,2^"; splice_chain "150784291^,150809331^";
chr7	juncbase	alternative_donor	150783096	150813880	.	+	.	gene_id "alternative_donor.1008"; transcript_id "alternative_donor.1008"; gene_name "CUFF.1033"; flanks "150783096-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150784291^";
chr7	juncbase	alternative_donor	150812728	150813880	.	+	.	gene_id "alternative_donor.1009"; transcript_id "alternative_donor.1009"; gene_name "CUFF.1033"; flanks "150812728-,150813880^"; structure "1^,2^"; splice_chain "150784291^,150812728^";
chr7	juncbase	intron_retention	127251999	127251730	.	-	.	gene_id "intron_retention.844"; transcript_id "intron_retention.844"; gene_name ""; flanks "127251999-,127251730^"; structure "0,1^2-"; splice_chain ",127251999^127251730-";
chr7	juncbase	intron_retention	37488463	37382367	.	-	.	gene_id "intron_retention.845"; transcript_id "intron_retention.845"; gene_name ""; flanks "37488463-,37382367^"; structure "0,1^2-"; splice_chain ",37488463^37382367-";
chr7	juncbase	jcn_only_AD	150784159	150813880	.	+	.	gene_id "jcn_only_AD.1182"; transcript_id "jcn_only_AD.1182"; gene_name "CUFF.1033"; flanks "150784159-,150813880^"; structure "1^,2^"; splice_chain "150784159^,150809331^";
chr7	juncbase	jcn_only_AD	150784291	150813880	.	+	.	gene_id "jcn_only_AD.1183"; transcript_id "jcn_only_AD.1183"; gene_name "CUFF.1033"; flanks "150784291-,150813880^"; structure "1^,2^"; splice_chain "150784291^,150809331^";
chr7	juncbase	jcn_only_AD	150813737	150813880	.	+	.	gene_id "jcn_only_AD.1184"; transcript_id "jcn_only_AD.1184"; gene_name "CUFF.1033"; flanks "150813737-,150813880^"; structure "1^,2^"; splice_chain "150809331^,150813737^";
chr7	juncbase	jcn_only_AD	150783147	150813880	.	+	.	gene_id "jcn_only_AD.1185"; transcript_id "jcn_only_AD.1185"; gene_name "CUFF.1033"; flanks "150783147-,150813880^"; structure "1^,2^"; splice_chain "150783147^,150809331^";
chr7	juncbase	jcn_only_AD	150787634	150813880	.	+	.	gene_id "jcn_only_AD.1186"; transcript_id "jcn_only_AD.1186"; gene_name "CUFF.1033"; flanks "150787634-,150813880^"; structure "1^,2^"; splice_chain "150787634^,150809331^";
chr7	juncbase	jcn_only_AD	150783096	150813880	.	+	.	gene_id "jcn_only_AD.1187"; transcript_id "jcn_only_AD.1187"; gene_name "CUFF.1033"; flanks "150783096-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150809331^";
chr7	juncbase	jcn_only_AD	150812728	150813880	.	+	.	gene_id "jcn_only_AD.1188"; transcript_id "jcn_only_AD.1188"; gene_name "CUFF.1033"; flanks "150812728-,150813880^"; structure "1^,2^"; splice_chain "150809331^,150812728^";
chr7	juncbase	jcn_only_AD	157647567	157655237	.	+	.	gene_id "jcn_only_AD.1189"; transcript_id "jcn_only_AD.1189"; gene_name "CUFF.1046"; flanks "157647567-,157655237^"; structure "1^,2^"; splice_chain "157647567^,157650240^";
chr7	juncbase	jcn_only_AD	150784159	150813880	.	+	.	gene_id "jcn_only_AD.1190"; transcript_id "jcn_only_AD.1190"; gene_name "CUFF.1033"; flanks "150784159-,150813880^"; structure "1^,2^"; splice_chain "150783147^,150784159^";
chr7	juncbase	jcn_only_AD	150784291	150813880	.	+	.	gene_id "jcn_only_AD.1191"; transcript_id "jcn_only_AD.1191"; gene_name "CUFF.1033"; flanks "150784291-,150813880^"; structure "1^,2^"; splice_chain "150783147^,150784291^";
chr7	juncbase	jcn_only_AD	150813737	150813880	.	+	.	gene_id "jcn_only_AD.1192"; transcript_id "jcn_only_AD.1192"; gene_name "CUFF.1033"; flanks "150813737-,150813880^"; structure "1^,2^"; splice_chain "150783147^,150813737^";
chr7	juncbase	jcn_only_AD	150787634	150813880	.	+	.	gene_id "jcn_only_AD.1193"; transcript_id "jcn_only_AD.1193"; gene_name "CUFF.1033"; flanks "150787634-,150813880^"; structure "1^,2^"; splice_chain "150783147^,150787634^";
chr7	juncbase	jcn_only_AD	150809331	150813880	.	+	.	gene_id "jcn_only_AD.1194"; transcript_id "jcn_only_AD.1194"; gene_name "CUFF.1033"; flanks "150809331-,150813880^"; structure "1^,2^"; splice_chain "150783147^,150809331^";
chr7	juncbase	jcn_only_AD	150783096	150813880	.	+	.	gene_id "jcn_only_AD.1195"; transcript_id "jcn_only_AD.1195"; gene_name "CUFF.1033"; flanks "150783096-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150783147^";
chr7	juncbase	jcn_only_AD	150812728	150813880	.	+	.	gene_id "jcn_only_AD.1196"; transcript_id "jcn_only_AD.1196"; gene_name "CUFF.1033"; flanks "150812728-,150813880^"; structure "1^,2^"; splice_chain "150783147^,150812728^";
chr7	juncbase	alternative_donor	86554844	86548626	.	-	.	gene_id "alternative_donor.1010"; transcript_id "alternative_donor.1010"; gene_name "CUFF.953,CUFF.970"; flanks "86554844-,86548626^"; structure "1^,2^"; splice_chain "86554844^,86549024^";
chr7	juncbase	alternative_donor	86550079	86548626	.	-	.	gene_id "alternative_donor.1011"; transcript_id "alternative_donor.1011"; gene_name "CUFF.953,CUFF.970"; flanks "86550079-,86548626^"; structure "1^,2^"; splice_chain "86550079^,86549024^";
chr7	juncbase	jcn_only_AD	102252519	102251589	.	-	.	gene_id "jcn_only_AD.1197"; transcript_id "jcn_only_AD.1197"; gene_name "CUFF.983"; flanks "102252519-,102251589^"; structure "1^,2^"; splice_chain "102256970^,102252519^";
chr7	juncbase	jcn_only_AD	102257072	102251589	.	-	.	gene_id "jcn_only_AD.1198"; transcript_id "jcn_only_AD.1198"; gene_name "CUFF.983"; flanks "102257072-,102251589^"; structure "1^,2^"; splice_chain "102257072^,102256970^";
chr7	juncbase	jcn_only_AA	110603621	111127294	.	-	.	gene_id "jcn_only_AA.935"; transcript_id "jcn_only_AA.935"; gene_name "CUFF.995"; flanks "110603621-,111127294^"; structure "1-,2-"; splice_chain "111123784-,110603621-";
chr7	juncbase	jcn_only_AD	193804	195554	.	+	.	gene_id "jcn_only_AD.1199"; transcript_id "jcn_only_AD.1199"; gene_name "CUFF.920"; flanks "193804-,195554^"; structure "1^,2^"; splice_chain "193804^,195327^";
chr7	juncbase	intron_retention	44247797	44250441	.	+	.	gene_id "intron_retention.846"; transcript_id "intron_retention.846"; gene_name "CUFF.950"; flanks "44247797-,44250441^"; structure "0,1^2-"; splice_chain ",44247797^44250441-";
chr7	juncbase	jcn_only_AD	75070232	75068502	.	-	.	gene_id "jcn_only_AD.1200"; transcript_id "jcn_only_AD.1200"; gene_name ""; flanks "75070232-,75068502^"; structure "1^,2^"; splice_chain "75070232^,75069884^";
chr7	juncbase	jcn_only_AA	107236447	107240842	.	+	.	gene_id "jcn_only_AA.936"; transcript_id "jcn_only_AA.936"; gene_name "CUFF.988"; flanks "107236447-,107240842^"; structure "1-,2-"; splice_chain "107240677-,107240842-";
chr7	juncbase	intron_retention	36934614	36901341	.	-	.	gene_id "intron_retention.847"; transcript_id "intron_retention.847"; gene_name ""; flanks "36934614-,36901341^"; structure "0,1^2-"; splice_chain ",36934614^36901341-";
chr7	juncbase	jcn_only_AA	136554165	136699567	.	+	.	gene_id "jcn_only_AA.937"; transcript_id "jcn_only_AA.937"; gene_name "CUFF.1027"; flanks "136554165-,136699567^"; structure "1-,2-"; splice_chain "136635750-,136699567-";
chr7	juncbase	jcn_only_AA	136554165	136676934	.	+	.	gene_id "jcn_only_AA.938"; transcript_id "jcn_only_AA.938"; gene_name "CUFF.1027"; flanks "136554165-,136676934^"; structure "1-,2-"; splice_chain "136635750-,136676934-";
chr7	juncbase	jcn_only_AA	136554165	136554552	.	+	.	gene_id "jcn_only_AA.939"; transcript_id "jcn_only_AA.939"; gene_name "CUFF.1027"; flanks "136554165-,136554552^"; structure "1-,2-"; splice_chain "136554552-,136635750-";
chr7	juncbase	alternative_acceptor	102236554	102240307	.	-	.	gene_id "alternative_acceptor.707"; transcript_id "alternative_acceptor.707"; gene_name "CUFF.983"; flanks "102236554-,102240307^"; structure "1-,2-"; splice_chain "102236576-,102236554-";
chr7	juncbase	cassette	110603556	110303777	.	-	.	gene_id "cassette.554"; transcript_id "cassette.554"; gene_name "CUFF.995"; flanks "110603556-,110303777^"; structure "0,1-2^"; splice_chain ",110526751-110526649^";
chr7	juncbase	alternative_donor	38948754	38937729	.	-	.	gene_id "alternative_donor.1012"; transcript_id "alternative_donor.1012"; gene_name "CUFF.948"; flanks "38948754-,38937729^"; structure "1^,2^"; splice_chain "38971878^,38948754^";
chr7	juncbase	alternative_donor	38969072	38937729	.	-	.	gene_id "alternative_donor.1013"; transcript_id "alternative_donor.1013"; gene_name "CUFF.948"; flanks "38969072-,38937729^"; structure "1^,2^"; splice_chain "38971878^,38969072^";
chr7	juncbase	jcn_only_AD	38768142	38766588	.	-	.	gene_id "jcn_only_AD.1201"; transcript_id "jcn_only_AD.1201"; gene_name "CUFF.948"; flanks "38768142-,38766588^"; structure "1^,2^"; splice_chain "38768142^,38767941^";
chr7	juncbase	alternative_donor	75040009	75040938	.	+	.	gene_id "alternative_donor.1014"; transcript_id "alternative_donor.1014"; gene_name "CUFF.964"; flanks "75040009-,75040938^"; structure "1^,2^"; splice_chain "75040009^,75040857^";
chr7	juncbase	jcn_only_AA	127251039	127251589	.	-	.	gene_id "jcn_only_AA.940"; transcript_id "jcn_only_AA.940"; gene_name "CUFF.1019"; flanks "127251039-,127251589^"; structure "1-,2-"; splice_chain "127251260-,127251039-";
chr7	juncbase	jcn_only_AD	111030627	110603621	.	-	.	gene_id "jcn_only_AD.1202"; transcript_id "jcn_only_AD.1202"; gene_name ""; flanks "111030627-,110603621^"; structure "1^,2^"; splice_chain "111127294^,111030627^";
chr7	juncbase	jcn_only_AD	111031894	110603621	.	-	.	gene_id "jcn_only_AD.1203"; transcript_id "jcn_only_AD.1203"; gene_name ""; flanks "111031894-,110603621^"; structure "1^,2^"; splice_chain "111127294^,111031894^";
chr7	juncbase	alternative_acceptor	107215755	107216854	.	+	.	gene_id "alternative_acceptor.708"; transcript_id "alternative_acceptor.708"; gene_name "CUFF.987"; flanks "107215755-,107216854^"; structure "1-,2-"; splice_chain "107216811-,107216854-";
chr7	juncbase	jcn_only_AD	73098231	73100966	.	+	.	gene_id "jcn_only_AD.1204"; transcript_id "jcn_only_AD.1204"; gene_name "CUFF.959"; flanks "73098231-,73100966^"; structure "1^,2^"; splice_chain "73097713^,73098231^";
chr7	juncbase	jcn_only_AD	73098330	73100966	.	+	.	gene_id "jcn_only_AD.1205"; transcript_id "jcn_only_AD.1205"; gene_name "CUFF.959"; flanks "73098330-,73100966^"; structure "1^,2^"; splice_chain "73097713^,73098330^";
chr7	juncbase	jcn_only_AD	73098253	73100966	.	+	.	gene_id "jcn_only_AD.1206"; transcript_id "jcn_only_AD.1206"; gene_name "CUFF.959"; flanks "73098253-,73100966^"; structure "1^,2^"; splice_chain "73097713^,73098253^";
chr7	juncbase	jcn_only_AD	73098134	73100966	.	+	.	gene_id "jcn_only_AD.1207"; transcript_id "jcn_only_AD.1207"; gene_name "CUFF.959"; flanks "73098134-,73100966^"; structure "1^,2^"; splice_chain "73097713^,73098134^";
chr7	juncbase	jcn_only_AD	134249521	134252910	.	+	.	gene_id "jcn_only_AD.1208"; transcript_id "jcn_only_AD.1208"; gene_name "CUFF.1024"; flanks "134249521-,134252910^"; structure "1^,2^"; splice_chain "134249521^,134250298^";
chr7	juncbase	jcn_only_AA	37256300	37262220	.	-	.	gene_id "jcn_only_AA.941"; transcript_id "jcn_only_AA.941"; gene_name "CUFF.944"; flanks "37256300-,37262220^"; structure "1-,2-"; splice_chain "37257361-,37256300-";
chr7	juncbase	cassette	86688641	86577238	.	-	.	gene_id "cassette.555"; transcript_id "cassette.555"; gene_name "CUFF.970"; flanks "86688641-,86577238^"; structure "0,1-2^"; splice_chain ",86594340-86594220^";
chr7	juncbase	jcn_only_AD	107211711	107215633	.	+	.	gene_id "jcn_only_AD.1209"; transcript_id "jcn_only_AD.1209"; gene_name "CUFF.987"; flanks "107211711-,107215633^"; structure "1^,2^"; splice_chain "107211711^,107214266^";
chr7	juncbase	jcn_only_AD	107214328	107215633	.	+	.	gene_id "jcn_only_AD.1210"; transcript_id "jcn_only_AD.1210"; gene_name "CUFF.987"; flanks "107214328-,107215633^"; structure "1^,2^"; splice_chain "107214266^,107214328^";
chr7	juncbase	intron_retention	75040009	75040938	.	+	.	gene_id "intron_retention.848"; transcript_id "intron_retention.848"; gene_name ""; flanks "75040009-,75040938^"; structure "0,1^2-"; splice_chain ",75040009^75040938-";
chr7	juncbase	jcn_only_AA	73101230	73105246	.	+	.	gene_id "jcn_only_AA.942"; transcript_id "jcn_only_AA.942"; gene_name ""; flanks "73101230-,73105246^"; structure "1-,2-"; splice_chain "73101329-,73105246-";
chr7	juncbase	jcn_only_AA	73101230	73106926	.	+	.	gene_id "jcn_only_AA.943"; transcript_id "jcn_only_AA.943"; gene_name ""; flanks "73101230-,73106926^"; structure "1-,2-"; splice_chain "73101329-,73106926-";
chr7	juncbase	cassette	6641771	6647591	.	+	.	gene_id "cassette.556"; transcript_id "cassette.556"; gene_name "CUFF.926"; flanks "6641771-,6647591^"; structure "0,1-2^"; splice_chain ",6647168-6647228^";
chr7	juncbase	alternative_acceptor	22233073	22233533	.	-	.	gene_id "alternative_acceptor.709"; transcript_id "alternative_acceptor.709"; gene_name "CUFF.939"; flanks "22233073-,22233533^"; structure "1-,2-"; splice_chain "22233395-,22233073-";
chr7	juncbase	alternative_donor	107211711	107215633	.	+	.	gene_id "alternative_donor.1015"; transcript_id "alternative_donor.1015"; gene_name "CUFF.987"; flanks "107211711-,107215633^"; structure "1^,2^"; splice_chain "107211711^,107214328^";
chr7	juncbase	alternative_donor	107214266	107215633	.	+	.	gene_id "alternative_donor.1016"; transcript_id "alternative_donor.1016"; gene_name "CUFF.987"; flanks "107214266-,107215633^"; structure "1^,2^"; splice_chain "107214266^,107214328^";
chr7	juncbase	intron_retention	107204504	107205033	.	+	.	gene_id "intron_retention.849"; transcript_id "intron_retention.849"; gene_name ""; flanks "107204504-,107205033^"; structure "0,1^2-"; splice_chain ",107204504^107205033-";
chr7	juncbase	intron_retention	156474523	156473268	.	-	.	gene_id "intron_retention.850"; transcript_id "intron_retention.850"; gene_name "CUFF.1043"; flanks "156474523-,156473268^"; structure "0,1^2-"; splice_chain ",156474523^156473268-";
chr7	juncbase	jcn_only_AA	75039743	75044163	.	+	.	gene_id "jcn_only_AA.944"; transcript_id "jcn_only_AA.944"; gene_name ""; flanks "75039743-,75044163^"; structure "1-,2-"; splice_chain "75039889-,75044163-";
chr7	juncbase	jcn_only_AD	102256970	102251589	.	-	.	gene_id "jcn_only_AD.1211"; transcript_id "jcn_only_AD.1211"; gene_name "CUFF.983"; flanks "102256970-,102251589^"; structure "1^,2^"; splice_chain "102256970^,102252519^";
chr7	juncbase	jcn_only_AD	102257072	102251589	.	-	.	gene_id "jcn_only_AD.1212"; transcript_id "jcn_only_AD.1212"; gene_name "CUFF.983"; flanks "102257072-,102251589^"; structure "1^,2^"; splice_chain "102257072^,102252519^";
chr7	juncbase	alternative_donor	134249521	134252910	.	+	.	gene_id "alternative_donor.1017"; transcript_id "alternative_donor.1017"; gene_name "CUFF.1024"; flanks "134249521-,134252910^"; structure "1^,2^"; splice_chain "134249521^,134250298^";
chr7	juncbase	intron_retention	73108380	73111796	.	+	.	gene_id "intron_retention.851"; transcript_id "intron_retention.851"; gene_name ""; flanks "73108380-,73111796^"; structure "0,1^2-"; splice_chain ",73108380^73111796-";
chr7	juncbase	alternative_donor	37052904	36934622	.	-	.	gene_id "alternative_donor.1018"; transcript_id "alternative_donor.1018"; gene_name "CUFF.944"; flanks "37052904-,36934622^"; structure "1^,2^"; splice_chain "37052904^,37025528^";
chr7	juncbase	alternative_donor	37024520	36934622	.	-	.	gene_id "alternative_donor.1019"; transcript_id "alternative_donor.1019"; gene_name "CUFF.944"; flanks "37024520-,36934622^"; structure "1^,2^"; splice_chain "37025528^,37024520^";
chr7	juncbase	alternative_donor	44247797	44250622	.	+	.	gene_id "alternative_donor.1020"; transcript_id "alternative_donor.1020"; gene_name "CUFF.950"; flanks "44247797-,44250622^"; structure "1^,2^"; splice_chain "44247797^,44250530^";
chr7	juncbase	cassette	128848692	128850204	.	+	.	gene_id "cassette.557"; transcript_id "cassette.557"; gene_name "CUFF.1021"; flanks "128848692-,128850204^"; structure "0,1-2^"; splice_chain ",128849130-128849238^";
chr7	juncbase	alternative_acceptor	86542381	86544039	.	-	.	gene_id "alternative_acceptor.710"; transcript_id "alternative_acceptor.710"; gene_name "CUFF.970"; flanks "86542381-,86544039^"; structure "1-,2-"; splice_chain "86542520-,86542381-";
chr7	juncbase	alternative_acceptor	156556489	156629507	.	-	.	gene_id "alternative_acceptor.711"; transcript_id "alternative_acceptor.711"; gene_name "CUFF.1043"; flanks "156556489-,156629507^"; structure "1-,2-"; splice_chain "156627289-,156556489-";
chr7	juncbase	alternative_acceptor	156627269	156629507	.	-	.	gene_id "alternative_acceptor.712"; transcript_id "alternative_acceptor.712"; gene_name "CUFF.1043"; flanks "156627269-,156629507^"; structure "1-,2-"; splice_chain "156627289-,156627269-";
chr7	juncbase	alternative_acceptor	156626486	156629507	.	-	.	gene_id "alternative_acceptor.713"; transcript_id "alternative_acceptor.713"; gene_name "CUFF.1043"; flanks "156626486-,156629507^"; structure "1-,2-"; splice_chain "156627289-,156626486-";
chr7	juncbase	jcn_only_AA	73101425	73105246	.	+	.	gene_id "jcn_only_AA.945"; transcript_id "jcn_only_AA.945"; gene_name ""; flanks "73101425-,73105246^"; structure "1-,2-"; splice_chain "73105246-,73277203-";
chr7	juncbase	jcn_only_AA	73101425	73106926	.	+	.	gene_id "jcn_only_AA.946"; transcript_id "jcn_only_AA.946"; gene_name ""; flanks "73101425-,73106926^"; structure "1-,2-"; splice_chain "73106926-,73277203-";
chr7	juncbase	cassette	44247797	44251846	.	+	.	gene_id "cassette.558"; transcript_id "cassette.558"; gene_name "CUFF.950"; flanks "44247797-,44251846^"; structure "0,1-2^"; splice_chain ",44250622-44250723^";
chr7	juncbase	jcn_only_AA	107576101	107577538	.	-	.	gene_id "jcn_only_AA.947"; transcript_id "jcn_only_AA.947"; gene_name ""; flanks "107576101-,107577538^"; structure "1-,2-"; splice_chain "107576818-,107576101-";
chr7	juncbase	jcn_only_AA	30791920	30793350	.	+	.	gene_id "jcn_only_AA.948"; transcript_id "jcn_only_AA.948"; gene_name "CUFF.940"; flanks "30791920-,30793350^"; structure "1-,2-"; splice_chain "30793347-,30793350-";
chr7	juncbase	jcn_only_AD	44247797	44250622	.	+	.	gene_id "jcn_only_AD.1213"; transcript_id "jcn_only_AD.1213"; gene_name "CUFF.950"; flanks "44247797-,44250622^"; structure "1^,2^"; splice_chain "44247797^,44250530^";
chr7	juncbase	alternative_donor	193804	195554	.	+	.	gene_id "alternative_donor.1021"; transcript_id "alternative_donor.1021"; gene_name "CUFF.920"; flanks "193804-,195554^"; structure "1^,2^"; splice_chain "193804^,195327^";
chr7	juncbase	alternative_acceptor	156556489	156629507	.	-	.	gene_id "alternative_acceptor.714"; transcript_id "alternative_acceptor.714"; gene_name "CUFF.1043"; flanks "156556489-,156629507^"; structure "1-,2-"; splice_chain "156626486-,156556489-";
chr7	juncbase	alternative_acceptor	156627289	156629507	.	-	.	gene_id "alternative_acceptor.715"; transcript_id "alternative_acceptor.715"; gene_name "CUFF.1043"; flanks "156627289-,156629507^"; structure "1-,2-"; splice_chain "156627289-,156626486-";
chr7	juncbase	alternative_acceptor	156627269	156629507	.	-	.	gene_id "alternative_acceptor.716"; transcript_id "alternative_acceptor.716"; gene_name "CUFF.1043"; flanks "156627269-,156629507^"; structure "1-,2-"; splice_chain "156627269-,156626486-";
chr7	juncbase	jcn_only_AD	37025528	36934622	.	-	.	gene_id "jcn_only_AD.1214"; transcript_id "jcn_only_AD.1214"; gene_name "CUFF.944"; flanks "37025528-,36934622^"; structure "1^,2^"; splice_chain "37025528^,37024520^";
chr7	juncbase	jcn_only_AD	37052904	36934622	.	-	.	gene_id "jcn_only_AD.1215"; transcript_id "jcn_only_AD.1215"; gene_name "CUFF.944"; flanks "37052904-,36934622^"; structure "1^,2^"; splice_chain "37052904^,37024520^";
chr7	juncbase	alternative_donor	150784159	150813880	.	+	.	gene_id "alternative_donor.1022"; transcript_id "alternative_donor.1022"; gene_name "CUFF.1033"; flanks "150784159-,150813880^"; structure "1^,2^"; splice_chain "150783147^,150784159^";
chr7	juncbase	alternative_donor	150784291	150813880	.	+	.	gene_id "alternative_donor.1023"; transcript_id "alternative_donor.1023"; gene_name "CUFF.1033"; flanks "150784291-,150813880^"; structure "1^,2^"; splice_chain "150783147^,150784291^";
chr7	juncbase	alternative_donor	150813737	150813880	.	+	.	gene_id "alternative_donor.1024"; transcript_id "alternative_donor.1024"; gene_name "CUFF.1033"; flanks "150813737-,150813880^"; structure "1^,2^"; splice_chain "150783147^,150813737^";
chr7	juncbase	alternative_donor	150787634	150813880	.	+	.	gene_id "alternative_donor.1025"; transcript_id "alternative_donor.1025"; gene_name "CUFF.1033"; flanks "150787634-,150813880^"; structure "1^,2^"; splice_chain "150783147^,150787634^";
chr7	juncbase	alternative_donor	150809331	150813880	.	+	.	gene_id "alternative_donor.1026"; transcript_id "alternative_donor.1026"; gene_name "CUFF.1033"; flanks "150809331-,150813880^"; structure "1^,2^"; splice_chain "150783147^,150809331^";
chr7	juncbase	alternative_donor	150783096	150813880	.	+	.	gene_id "alternative_donor.1027"; transcript_id "alternative_donor.1027"; gene_name "CUFF.1033"; flanks "150783096-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150783147^";
chr7	juncbase	alternative_donor	150812728	150813880	.	+	.	gene_id "alternative_donor.1028"; transcript_id "alternative_donor.1028"; gene_name "CUFF.1033"; flanks "150812728-,150813880^"; structure "1^,2^"; splice_chain "150783147^,150812728^";
chr7	juncbase	alternative_donor	65579957	65592691	.	+	.	gene_id "alternative_donor.1029"; transcript_id "alternative_donor.1029"; gene_name "CUFF.956"; flanks "65579957-,65592691^"; structure "1^,2^"; splice_chain "65579901^,65579957^";
chr7	juncbase	alternative_donor	65591630	65592691	.	+	.	gene_id "alternative_donor.1030"; transcript_id "alternative_donor.1030"; gene_name "CUFF.956"; flanks "65591630-,65592691^"; structure "1^,2^"; splice_chain "65579901^,65591630^";
chr7	juncbase	jcn_only_AD	92158238	92158790	.	+	.	gene_id "jcn_only_AD.1216"; transcript_id "jcn_only_AD.1216"; gene_name "CUFF.974"; flanks "92158238-,92158790^"; structure "1^,2^"; splice_chain "92158238^,92158497^";
chr7	juncbase	jcn_only_AD	86595130	86594340	.	-	.	gene_id "jcn_only_AD.1217"; transcript_id "jcn_only_AD.1217"; gene_name ""; flanks "86595130-,86594340^"; structure "1^,2^"; splice_chain "86595130^,86595125^";
chr7	juncbase	cassette	65592727	65599267	.	+	.	gene_id "cassette.559"; transcript_id "cassette.559"; gene_name "CUFF.956"; flanks "65592727-,65599267^"; structure "0,1-2^"; splice_chain ",65595731-65595829^";
chr7	juncbase	jcn_only_AD	73101425	73106926	.	+	.	gene_id "jcn_only_AD.1218"; transcript_id "jcn_only_AD.1218"; gene_name ""; flanks "73101425-,73106926^"; structure "1^,2^"; splice_chain "73101425^,73105342^";
chr7	juncbase	jcn_only_AD	73101230	73106926	.	+	.	gene_id "jcn_only_AD.1219"; transcript_id "jcn_only_AD.1219"; gene_name ""; flanks "73101230-,73106926^"; structure "1^,2^"; splice_chain "73101230^,73105342^";
chr7	juncbase	alternative_acceptor	150815431	150815592	.	+	.	gene_id "alternative_acceptor.717"; transcript_id "alternative_acceptor.717"; gene_name "CUFF.1033,CUFF.977"; flanks "150815431-,150815592^"; structure "1-,2-"; splice_chain "150815561-,150815592-";
chr7	juncbase	jcn_only_AA	86542381	86544039	.	-	.	gene_id "jcn_only_AA.949"; transcript_id "jcn_only_AA.949"; gene_name "CUFF.970"; flanks "86542381-,86544039^"; structure "1-,2-"; splice_chain "86542520-,86542381-";
chr7	juncbase	jcn_only_AD	156626433	156619438	.	-	.	gene_id "jcn_only_AD.1220"; transcript_id "jcn_only_AD.1220"; gene_name ""; flanks "156626433-,156619438^"; structure "1^,2^"; splice_chain "156626447^,156626433^";
chr7	juncbase	jcn_only_AD	156685622	156619438	.	-	.	gene_id "jcn_only_AD.1221"; transcript_id "jcn_only_AD.1221"; gene_name ""; flanks "156685622-,156619438^"; structure "1^,2^"; splice_chain "156685622^,156626447^";
chr7	juncbase	cassette	75042210	75044163	.	+	.	gene_id "cassette.560"; transcript_id "cassette.560"; gene_name "CUFF.964"; flanks "75042210-,75044163^"; structure "0,1-2^"; splice_chain ",75043918-75044076^";
chr7	juncbase	cassette	148984867	148989302	.	+	.	gene_id "cassette.561"; transcript_id "cassette.561"; gene_name "CUFF.1030"; flanks "148984867-,148989302^"; structure "0,1-2^"; splice_chain ",148987029-148987129^";
chr7	juncbase	alternative_donor	117511644	117501370	.	-	.	gene_id "alternative_donor.1031"; transcript_id "alternative_donor.1031"; gene_name ""; flanks "117511644-,117501370^"; structure "1^,2^"; splice_chain "117514055^,117511644^";
chr7	juncbase	alternative_donor	117512158	117501370	.	-	.	gene_id "alternative_donor.1032"; transcript_id "alternative_donor.1032"; gene_name ""; flanks "117512158-,117501370^"; structure "1^,2^"; splice_chain "117514055^,117512158^";
chr7	juncbase	jcn_only_AA	6630106	6631334	.	+	.	gene_id "jcn_only_AA.950"; transcript_id "jcn_only_AA.950"; gene_name "CUFF.926"; flanks "6630106-,6631334^"; structure "1-,2-"; splice_chain "6631277-,6631334-";
chr7	juncbase	jcn_only_AA	107572822	107575860	.	-	.	gene_id "jcn_only_AA.951"; transcript_id "jcn_only_AA.951"; gene_name ""; flanks "107572822-,107575860^"; structure "1-,2-"; splice_chain "107572938-,107572822-";
chr7	juncbase	alternative_acceptor	86541487	86542257	.	-	.	gene_id "alternative_acceptor.718"; transcript_id "alternative_acceptor.718"; gene_name "CUFF.970"; flanks "86541487-,86542257^"; structure "1-,2-"; splice_chain "86541561-,86541487-";
chr7	juncbase	alternative_acceptor	129015767	129019482	.	+	.	gene_id "alternative_acceptor.719"; transcript_id "alternative_acceptor.719"; gene_name ""; flanks "129015767-,129019482^"; structure "1-,2-"; splice_chain "129019479-,129019482-";
chr7	juncbase	intron_retention	75044076	75044163	.	+	.	gene_id "intron_retention.852"; transcript_id "intron_retention.852"; gene_name "CUFF.964"; flanks "75044076-,75044163^"; structure "0,1^2-"; splice_chain ",75044076^75044163-";
chr7	juncbase	cassette	36934459	36917722	.	-	.	gene_id "cassette.562"; transcript_id "cassette.562"; gene_name "CUFF.944"; flanks "36934459-,36917722^"; structure "0,1-2^"; splice_chain ",36927277-36927165^";
chr7	juncbase	intron_retention	107214266	107215633	.	+	.	gene_id "intron_retention.853"; transcript_id "intron_retention.853"; gene_name ""; flanks "107214266-,107215633^"; structure "0,1^2-"; splice_chain ",107214266^107215633-";
chr7	juncbase	alternative_donor	102462487	102453978	.	-	.	gene_id "alternative_donor.1033"; transcript_id "alternative_donor.1033"; gene_name "CUFF.984"; flanks "102462487-,102453978^"; structure "1^,2^"; splice_chain "102462487^,102454781^";
chr7	juncbase	jcn_only_AA	150815431	150815592	.	+	.	gene_id "jcn_only_AA.952"; transcript_id "jcn_only_AA.952"; gene_name "CUFF.1033,CUFF.977"; flanks "150815431-,150815592^"; structure "1-,2-"; splice_chain "150815561-,150815592-";
chr7	juncbase	jcn_only_AA	73101230	73101329	.	+	.	gene_id "jcn_only_AA.953"; transcript_id "jcn_only_AA.953"; gene_name ""; flanks "73101230-,73101329^"; structure "1-,2-"; splice_chain "73101329-,73106926-";
chr7	juncbase	jcn_only_AA	73101230	73105246	.	+	.	gene_id "jcn_only_AA.954"; transcript_id "jcn_only_AA.954"; gene_name ""; flanks "73101230-,73105246^"; structure "1-,2-"; splice_chain "73105246-,73106926-";
chr7	juncbase	jcn_only_AD	156685622	156629579	.	-	.	gene_id "jcn_only_AD.1222"; transcript_id "jcn_only_AD.1222"; gene_name "CUFF.1043"; flanks "156685622-,156629579^"; structure "1^,2^"; splice_chain "156685622^,156685164^";
chr7	juncbase	jcn_only_AA	19153546	19156294	.	-	.	gene_id "jcn_only_AA.955"; transcript_id "jcn_only_AA.955"; gene_name "CUFF.938"; flanks "19153546-,19156294^"; structure "1-,2-"; splice_chain "19155754-,19153546-";
chr7	juncbase	jcn_only_AD	91732140	91739436	.	+	.	gene_id "jcn_only_AD.1223"; transcript_id "jcn_only_AD.1223"; gene_name "CUFF.972"; flanks "91732140-,91739436^"; structure "1^,2^"; splice_chain "91732140^,91737947^";
chr7	juncbase	jcn_only_AD	129019590	129028897	.	+	.	gene_id "jcn_only_AD.1224"; transcript_id "jcn_only_AD.1224"; gene_name "CUFF.1020"; flanks "129019590-,129028897^"; structure "1^,2^"; splice_chain "129019590^,129028781^";
chr7	juncbase	alternative_donor	55759007	55755617	.	-	.	gene_id "alternative_donor.1034"; transcript_id "alternative_donor.1034"; gene_name "CUFF.935"; flanks "55759007-,55755617^"; structure "1^,2^"; splice_chain "55759007^,55756606^";
chr7	juncbase	jcn_only_AA	156469377	156471771	.	-	.	gene_id "jcn_only_AA.956"; transcript_id "jcn_only_AA.956"; gene_name "CUFF.1043"; flanks "156469377-,156471771^"; structure "1-,2-"; splice_chain "156471044-,156469377-";
chr7	juncbase	jcn_only_AA	156469318	156471771	.	-	.	gene_id "jcn_only_AA.957"; transcript_id "jcn_only_AA.957"; gene_name "CUFF.1043"; flanks "156469318-,156471771^"; structure "1-,2-"; splice_chain "156471044-,156469318-";
chr7	juncbase	alternative_acceptor	129008392	129019482	.	+	.	gene_id "alternative_acceptor.720"; transcript_id "alternative_acceptor.720"; gene_name "CUFF.1020"; flanks "129008392-,129019482^"; structure "1-,2-"; splice_chain "129019479-,129019482-";
chr7	juncbase	alternative_donor	22232985	22206766	.	-	.	gene_id "alternative_donor.1035"; transcript_id "alternative_donor.1035"; gene_name "CUFF.939"; flanks "22232985-,22206766^"; structure "1^,2^"; splice_chain "22232985^,22231147^";
chr7	juncbase	alternative_donor	150784159	150813880	.	+	.	gene_id "alternative_donor.1036"; transcript_id "alternative_donor.1036"; gene_name "CUFF.1033"; flanks "150784159-,150813880^"; structure "1^,2^"; splice_chain "150784159^,150787634^";
chr7	juncbase	alternative_donor	150784291	150813880	.	+	.	gene_id "alternative_donor.1037"; transcript_id "alternative_donor.1037"; gene_name "CUFF.1033"; flanks "150784291-,150813880^"; structure "1^,2^"; splice_chain "150784291^,150787634^";
chr7	juncbase	alternative_donor	150813737	150813880	.	+	.	gene_id "alternative_donor.1038"; transcript_id "alternative_donor.1038"; gene_name "CUFF.1033"; flanks "150813737-,150813880^"; structure "1^,2^"; splice_chain "150787634^,150813737^";
chr7	juncbase	alternative_donor	150783147	150813880	.	+	.	gene_id "alternative_donor.1039"; transcript_id "alternative_donor.1039"; gene_name "CUFF.1033"; flanks "150783147-,150813880^"; structure "1^,2^"; splice_chain "150783147^,150787634^";
chr7	juncbase	alternative_donor	150809331	150813880	.	+	.	gene_id "alternative_donor.1040"; transcript_id "alternative_donor.1040"; gene_name "CUFF.1033"; flanks "150809331-,150813880^"; structure "1^,2^"; splice_chain "150787634^,150809331^";
chr7	juncbase	alternative_donor	150783096	150813880	.	+	.	gene_id "alternative_donor.1041"; transcript_id "alternative_donor.1041"; gene_name "CUFF.1033"; flanks "150783096-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150787634^";
chr7	juncbase	alternative_donor	150812728	150813880	.	+	.	gene_id "alternative_donor.1042"; transcript_id "alternative_donor.1042"; gene_name "CUFF.1033"; flanks "150812728-,150813880^"; structure "1^,2^"; splice_chain "150787634^,150812728^";
chr7	juncbase	alternative_acceptor	136554165	136635750	.	+	.	gene_id "alternative_acceptor.721"; transcript_id "alternative_acceptor.721"; gene_name ""; flanks "136554165-,136635750^"; structure "1-,2-"; splice_chain "136635750-,136699567-";
chr7	juncbase	alternative_acceptor	136554165	136676934	.	+	.	gene_id "alternative_acceptor.722"; transcript_id "alternative_acceptor.722"; gene_name ""; flanks "136554165-,136676934^"; structure "1-,2-"; splice_chain "136676934-,136699567-";
chr7	juncbase	alternative_acceptor	136554165	136554552	.	+	.	gene_id "alternative_acceptor.723"; transcript_id "alternative_acceptor.723"; gene_name ""; flanks "136554165-,136554552^"; structure "1-,2-"; splice_chain "136554552-,136699567-";
chr7	juncbase	intron_retention	127255455	127255149	.	-	.	gene_id "intron_retention.854"; transcript_id "intron_retention.854"; gene_name "CUFF.1019"; flanks "127255455-,127255149^"; structure "0,1^2-"; splice_chain ",127255455^127255149-";
chr7	juncbase	intron_retention	92164284	92166165	.	+	.	gene_id "intron_retention.855"; transcript_id "intron_retention.855"; gene_name "CUFF.974"; flanks "92164284-,92166165^"; structure "0,1^2-"; splice_chain ",92164284^92166165-";
chr7	juncbase	jcn_only_AD	102517914	102473421	.	-	.	gene_id "jcn_only_AD.1225"; transcript_id "jcn_only_AD.1225"; gene_name "CUFF.984"; flanks "102517914-,102473421^"; structure "1^,2^"; splice_chain "102517914^,102495224^";
chr7	juncbase	jcn_only_AD	7594787	7592553	.	-	.	gene_id "jcn_only_AD.1226"; transcript_id "jcn_only_AD.1226"; gene_name "CUFF.1001,CUFF.935"; flanks "7594787-,7592553^"; structure "1^,2^"; splice_chain "7594787^,7594319^";
chr7	juncbase	alternative_acceptor	107236447	107240842	.	+	.	gene_id "alternative_acceptor.724"; transcript_id "alternative_acceptor.724"; gene_name "CUFF.988"; flanks "107236447-,107240842^"; structure "1-,2-"; splice_chain "107240677-,107240842-";
chr7	juncbase	alternative_donor	150784159	150813880	.	+	.	gene_id "alternative_donor.1043"; transcript_id "alternative_donor.1043"; gene_name "CUFF.1033"; flanks "150784159-,150813880^"; structure "1^,2^"; splice_chain "150784159^,150813737^";
chr7	juncbase	alternative_donor	150784291	150813880	.	+	.	gene_id "alternative_donor.1044"; transcript_id "alternative_donor.1044"; gene_name "CUFF.1033"; flanks "150784291-,150813880^"; structure "1^,2^"; splice_chain "150784291^,150813737^";
chr7	juncbase	alternative_donor	150783147	150813880	.	+	.	gene_id "alternative_donor.1045"; transcript_id "alternative_donor.1045"; gene_name "CUFF.1033"; flanks "150783147-,150813880^"; structure "1^,2^"; splice_chain "150783147^,150813737^";
chr7	juncbase	alternative_donor	150787634	150813880	.	+	.	gene_id "alternative_donor.1046"; transcript_id "alternative_donor.1046"; gene_name "CUFF.1033"; flanks "150787634-,150813880^"; structure "1^,2^"; splice_chain "150787634^,150813737^";
chr7	juncbase	alternative_donor	150809331	150813880	.	+	.	gene_id "alternative_donor.1047"; transcript_id "alternative_donor.1047"; gene_name "CUFF.1033"; flanks "150809331-,150813880^"; structure "1^,2^"; splice_chain "150809331^,150813737^";
chr7	juncbase	alternative_donor	150783096	150813880	.	+	.	gene_id "alternative_donor.1048"; transcript_id "alternative_donor.1048"; gene_name "CUFF.1033"; flanks "150783096-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150813737^";
chr7	juncbase	alternative_donor	150812728	150813880	.	+	.	gene_id "alternative_donor.1049"; transcript_id "alternative_donor.1049"; gene_name "CUFF.1033"; flanks "150812728-,150813880^"; structure "1^,2^"; splice_chain "150812728^,150813737^";
chr7	juncbase	cassette	127253076	127251730	.	-	.	gene_id "cassette.563"; transcript_id "cassette.563"; gene_name "CUFF.1019"; flanks "127253076-,127251730^"; structure "0,1-2^"; splice_chain ",127252054-127251999^";
chr7	juncbase	alternative_donor	7594787	7592553	.	-	.	gene_id "alternative_donor.1050"; transcript_id "alternative_donor.1050"; gene_name "CUFF.1001,CUFF.935"; flanks "7594787-,7592553^"; structure "1^,2^"; splice_chain "7594787^,7594319^";
chr7	juncbase	alternative_acceptor	107234550	107236314	.	+	.	gene_id "alternative_acceptor.725"; transcript_id "alternative_acceptor.725"; gene_name "CUFF.988"; flanks "107234550-,107236314^"; structure "1-,2-"; splice_chain "107236312-,107236314-";
chr7	juncbase	alternative_donor	73098231	73100966	.	+	.	gene_id "alternative_donor.1051"; transcript_id "alternative_donor.1051"; gene_name "CUFF.959"; flanks "73098231-,73100966^"; structure "1^,2^"; splice_chain "73098231^,73098330^";
chr7	juncbase	alternative_donor	73097713	73100966	.	+	.	gene_id "alternative_donor.1052"; transcript_id "alternative_donor.1052"; gene_name "CUFF.959"; flanks "73097713-,73100966^"; structure "1^,2^"; splice_chain "73097713^,73098330^";
chr7	juncbase	alternative_donor	73098253	73100966	.	+	.	gene_id "alternative_donor.1053"; transcript_id "alternative_donor.1053"; gene_name "CUFF.959"; flanks "73098253-,73100966^"; structure "1^,2^"; splice_chain "73098253^,73098330^";
chr7	juncbase	alternative_donor	73098134	73100966	.	+	.	gene_id "alternative_donor.1054"; transcript_id "alternative_donor.1054"; gene_name "CUFF.959"; flanks "73098134-,73100966^"; structure "1^,2^"; splice_chain "73098134^,73098330^";
chr7	juncbase	jcn_only_AA	73098134	73105246	.	+	.	gene_id "jcn_only_AA.958"; transcript_id "jcn_only_AA.958"; gene_name ""; flanks "73098134-,73105246^"; structure "1-,2-"; splice_chain "73100966-,73105246-";
chr7	juncbase	jcn_only_AA	38766588	38768142	.	-	.	gene_id "jcn_only_AA.959"; transcript_id "jcn_only_AA.959"; gene_name "CUFF.948"; flanks "38766588-,38768142^"; structure "1-,2-"; splice_chain "38768034-,38766588-";
chr7	juncbase	jcn_only_AA	107211711	107215633	.	+	.	gene_id "jcn_only_AA.960"; transcript_id "jcn_only_AA.960"; gene_name "CUFF.987"; flanks "107211711-,107215633^"; structure "1-,2-"; splice_chain "107214149-,107215633-";
chr7	juncbase	jcn_only_AD	150784159	150813880	.	+	.	gene_id "jcn_only_AD.1227"; transcript_id "jcn_only_AD.1227"; gene_name "CUFF.1033"; flanks "150784159-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150784159^";
chr7	juncbase	jcn_only_AD	150784291	150813880	.	+	.	gene_id "jcn_only_AD.1228"; transcript_id "jcn_only_AD.1228"; gene_name "CUFF.1033"; flanks "150784291-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150784291^";
chr7	juncbase	jcn_only_AD	150813737	150813880	.	+	.	gene_id "jcn_only_AD.1229"; transcript_id "jcn_only_AD.1229"; gene_name "CUFF.1033"; flanks "150813737-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150813737^";
chr7	juncbase	jcn_only_AD	150783147	150813880	.	+	.	gene_id "jcn_only_AD.1230"; transcript_id "jcn_only_AD.1230"; gene_name "CUFF.1033"; flanks "150783147-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150783147^";
chr7	juncbase	jcn_only_AD	150787634	150813880	.	+	.	gene_id "jcn_only_AD.1231"; transcript_id "jcn_only_AD.1231"; gene_name "CUFF.1033"; flanks "150787634-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150787634^";
chr7	juncbase	jcn_only_AD	150809331	150813880	.	+	.	gene_id "jcn_only_AD.1232"; transcript_id "jcn_only_AD.1232"; gene_name "CUFF.1033"; flanks "150809331-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150809331^";
chr7	juncbase	jcn_only_AD	150812728	150813880	.	+	.	gene_id "jcn_only_AD.1233"; transcript_id "jcn_only_AD.1233"; gene_name "CUFF.1033"; flanks "150812728-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150812728^";
chr7	juncbase	jcn_only_AD	37262220	37256300	.	-	.	gene_id "jcn_only_AD.1234"; transcript_id "jcn_only_AD.1234"; gene_name "CUFF.944"; flanks "37262220-,37256300^"; structure "1^,2^"; splice_chain "37262220^,37257317^";
chr7	juncbase	intron_retention	107221022	107221204	.	+	.	gene_id "intron_retention.856"; transcript_id "intron_retention.856"; gene_name ""; flanks "107221022-,107221204^"; structure "0,1^2-"; splice_chain ",107221022^107221204-";
chr7	juncbase	cassette	34724296	34851382	.	+	.	gene_id "cassette.564"; transcript_id "cassette.564"; gene_name "CUFF.942"; flanks "34724296-,34851382^"; structure "0,1-2^"; splice_chain ",34818074-34818177^";
chr7	juncbase	cassette	34724296	34867013	.	+	.	gene_id "cassette.565"; transcript_id "cassette.565"; gene_name "CUFF.942"; flanks "34724296-,34867013^"; structure "0,1-2^"; splice_chain ",34818074-34818177^";
chr7	juncbase	alternative_donor	37025528	36934622	.	-	.	gene_id "alternative_donor.1055"; transcript_id "alternative_donor.1055"; gene_name ""; flanks "37025528-,36934622^"; structure "1^,2^"; splice_chain "37052904^,37025528^";
chr7	juncbase	alternative_donor	37024520	36934622	.	-	.	gene_id "alternative_donor.1056"; transcript_id "alternative_donor.1056"; gene_name ""; flanks "37024520-,36934622^"; structure "1^,2^"; splice_chain "37052904^,37024520^";
chr7	juncbase	alternative_donor	107211711	107215633	.	+	.	gene_id "alternative_donor.1057"; transcript_id "alternative_donor.1057"; gene_name "CUFF.987"; flanks "107211711-,107215633^"; structure "1^,2^"; splice_chain "107211711^,107214266^";
chr7	juncbase	alternative_donor	107214328	107215633	.	+	.	gene_id "alternative_donor.1058"; transcript_id "alternative_donor.1058"; gene_name "CUFF.987"; flanks "107214328-,107215633^"; structure "1^,2^"; splice_chain "107214266^,107214328^";
chr7	juncbase	cassette	54617863	54636824	.	+	.	gene_id "cassette.566"; transcript_id "cassette.566"; gene_name "CUFF.952"; flanks "54617863-,54636824^"; structure "0,1-2^"; splice_chain ",54621560-54621766^";
chr7	juncbase	intron_retention	150814864	150815297	.	+	.	gene_id "intron_retention.857"; transcript_id "intron_retention.857"; gene_name "CUFF.1033"; flanks "150814864-,150815297^"; structure "0,1^2-"; splice_chain ",150814864^150815297-";
chr7	juncbase	jcn_only_AD	65579901	65592691	.	+	.	gene_id "jcn_only_AD.1235"; transcript_id "jcn_only_AD.1235"; gene_name "CUFF.956"; flanks "65579901-,65592691^"; structure "1^,2^"; splice_chain "65579901^,65591630^";
chr7	juncbase	jcn_only_AD	65579957	65592691	.	+	.	gene_id "jcn_only_AD.1236"; transcript_id "jcn_only_AD.1236"; gene_name "CUFF.956"; flanks "65579957-,65592691^"; structure "1^,2^"; splice_chain "65579957^,65591630^";
chr7	juncbase	intron_retention	91718843	91722411	.	+	.	gene_id "intron_retention.858"; transcript_id "intron_retention.858"; gene_name "CUFF.972"; flanks "91718843-,91722411^"; structure "0,1^2-"; splice_chain ",91718843^91722411-";
chr7	juncbase	alternative_donor	156626433	156619438	.	-	.	gene_id "alternative_donor.1059"; transcript_id "alternative_donor.1059"; gene_name ""; flanks "156626433-,156619438^"; structure "1^,2^"; splice_chain "156685622^,156626433^";
chr7	juncbase	alternative_donor	156626447	156619438	.	-	.	gene_id "alternative_donor.1060"; transcript_id "alternative_donor.1060"; gene_name ""; flanks "156626447-,156619438^"; structure "1^,2^"; splice_chain "156685622^,156626447^";
chr7	juncbase	alternative_donor	111030627	110603621	.	-	.	gene_id "alternative_donor.1061"; transcript_id "alternative_donor.1061"; gene_name ""; flanks "111030627-,110603621^"; structure "1^,2^"; splice_chain "111127294^,111030627^";
chr7	juncbase	alternative_donor	111031894	110603621	.	-	.	gene_id "alternative_donor.1062"; transcript_id "alternative_donor.1062"; gene_name ""; flanks "111031894-,110603621^"; structure "1^,2^"; splice_chain "111127294^,111031894^";
chr7	juncbase	intron_retention	75045694	75045765	.	+	.	gene_id "intron_retention.859"; transcript_id "intron_retention.859"; gene_name "CUFF.964"; flanks "75045694-,75045765^"; structure "0,1^2-"; splice_chain ",75045694^75045765-";
chr7	juncbase	alternative_donor	102517914	102473421	.	-	.	gene_id "alternative_donor.1063"; transcript_id "alternative_donor.1063"; gene_name "CUFF.984"; flanks "102517914-,102473421^"; structure "1^,2^"; splice_chain "102517914^,102495224^";
chr7	juncbase	jcn_only_AA	102236554	102240307	.	-	.	gene_id "jcn_only_AA.961"; transcript_id "jcn_only_AA.961"; gene_name "CUFF.983"; flanks "102236554-,102240307^"; structure "1-,2-"; splice_chain "102236576-,102236554-";
chr7	juncbase	jcn_only_AA	148987129	148989302	.	+	.	gene_id "jcn_only_AA.962"; transcript_id "jcn_only_AA.962"; gene_name "CUFF.1030"; flanks "148987129-,148989302^"; structure "1-,2-"; splice_chain "148988647-,148989302-";
chr7	juncbase	jcn_only_AA	117424508	117431345	.	-	.	gene_id "jcn_only_AA.963"; transcript_id "jcn_only_AA.963"; gene_name "CUFF.1001"; flanks "117424508-,117431345^"; structure "1-,2-"; splice_chain "117426479-,117424508-";
chr7	juncbase	jcn_only_AA	156556489	156629507	.	-	.	gene_id "jcn_only_AA.964"; transcript_id "jcn_only_AA.964"; gene_name "CUFF.1043"; flanks "156556489-,156629507^"; structure "1-,2-"; splice_chain "156626486-,156556489-";
chr7	juncbase	jcn_only_AA	156627289	156629507	.	-	.	gene_id "jcn_only_AA.965"; transcript_id "jcn_only_AA.965"; gene_name "CUFF.1043"; flanks "156627289-,156629507^"; structure "1-,2-"; splice_chain "156627289-,156626486-";
chr7	juncbase	jcn_only_AA	156627269	156629507	.	-	.	gene_id "jcn_only_AA.966"; transcript_id "jcn_only_AA.966"; gene_name "CUFF.1043"; flanks "156627269-,156629507^"; structure "1-,2-"; splice_chain "156627269-,156626486-";
chr7	juncbase	alternative_acceptor	107207631	107211590	.	+	.	gene_id "alternative_acceptor.726"; transcript_id "alternative_acceptor.726"; gene_name "CUFF.987"; flanks "107207631-,107211590^"; structure "1-,2-"; splice_chain "107208200-,107211590-";
chr7	juncbase	alternative_donor	148982587	148984656	.	+	.	gene_id "alternative_donor.1064"; transcript_id "alternative_donor.1064"; gene_name "CUFF.1030"; flanks "148982587-,148984656^"; structure "1^,2^"; splice_chain "148982587^,148982787^";
chr7	juncbase	intron_retention	54617863	54636824	.	+	.	gene_id "intron_retention.860"; transcript_id "intron_retention.860"; gene_name "CUFF.952"; flanks "54617863-,54636824^"; structure "0,1^2-"; splice_chain ",54617863^54636824-";
chr7	juncbase	alternative_donor	22259485	22233651	.	-	.	gene_id "alternative_donor.1065"; transcript_id "alternative_donor.1065"; gene_name "CUFF.939"; flanks "22259485-,22233651^"; structure "1^,2^"; splice_chain "22259485^,22234188^";
chr7	juncbase	jcn_only_AD	73101425	73277203	.	+	.	gene_id "jcn_only_AD.1237"; transcript_id "jcn_only_AD.1237"; gene_name ""; flanks "73101425-,73277203^"; structure "1^,2^"; splice_chain "73101425^,73106976^";
chr7	juncbase	cassette	150815719	150819812	.	+	.	gene_id "cassette.567"; transcript_id "cassette.567"; gene_name "CUFF.1033"; flanks "150815719-,150819812^"; structure "0,1-2^"; splice_chain ",150817074-150817232^";
chr7	juncbase	cassette	37136224	37053040	.	-	.	gene_id "cassette.568"; transcript_id "cassette.568"; gene_name "CUFF.944"; flanks "37136224-,37053040^"; structure "0,1-2^"; splice_chain ",37073017-37072952^";
chr7	juncbase	alternative_acceptor	73098134	73105246	.	+	.	gene_id "alternative_acceptor.727"; transcript_id "alternative_acceptor.727"; gene_name ""; flanks "73098134-,73105246^"; structure "1-,2-"; splice_chain "73100966-,73105246-";
chr7	juncbase	intron_retention	150817832	150820881	.	+	.	gene_id "intron_retention.861"; transcript_id "intron_retention.861"; gene_name ""; flanks "150817832-,150820881^"; structure "0,1^2-"; splice_chain ",150817832^150820881-";
chr7	juncbase	jcn_only_AA	34724296	34818074	.	+	.	gene_id "jcn_only_AA.967"; transcript_id "jcn_only_AA.967"; gene_name "CUFF.942"; flanks "34724296-,34818074^"; structure "1-,2-"; splice_chain "34818074-,34818107-";
chr7	juncbase	jcn_only_AA	34724296	34725363	.	+	.	gene_id "jcn_only_AA.968"; transcript_id "jcn_only_AA.968"; gene_name "CUFF.942"; flanks "34724296-,34725363^"; structure "1-,2-"; splice_chain "34725363-,34818107-";
chr7	juncbase	intron_retention	107234550	107236314	.	+	.	gene_id "intron_retention.862"; transcript_id "intron_retention.862"; gene_name "CUFF.988"; flanks "107234550-,107236314^"; structure "0,1^2-"; splice_chain ",107234550^107236314-";
chr7	juncbase	alternative_donor	107236447	107240842	.	+	.	gene_id "alternative_donor.1066"; transcript_id "alternative_donor.1066"; gene_name "CUFF.988"; flanks "107236447-,107240842^"; structure "1^,2^"; splice_chain "107236447^,107240747^";
chr7	juncbase	jcn_only_AA	73108380	73111796	.	+	.	gene_id "jcn_only_AA.969"; transcript_id "jcn_only_AA.969"; gene_name ""; flanks "73108380-,73111796^"; structure "1-,2-"; splice_chain "73110736-,73111796-";
chr7	juncbase	jcn_only_AA	73108380	73111935	.	+	.	gene_id "jcn_only_AA.970"; transcript_id "jcn_only_AA.970"; gene_name ""; flanks "73108380-,73111935^"; structure "1-,2-"; splice_chain "73110736-,73111935-";
chr7	juncbase	jcn_only_AA	156526951	156549087	.	-	.	gene_id "jcn_only_AA.971"; transcript_id "jcn_only_AA.971"; gene_name ""; flanks "156526951-,156549087^"; structure "1-,2-"; splice_chain "156529309-,156526951-";
chr7	juncbase	jcn_only_AD	111030627	110603621	.	-	.	gene_id "jcn_only_AD.1238"; transcript_id "jcn_only_AD.1238"; gene_name "CUFF.995"; flanks "111030627-,110603621^"; structure "1^,2^"; splice_chain "111031894^,111030627^";
chr7	juncbase	jcn_only_AD	111127294	110603621	.	-	.	gene_id "jcn_only_AD.1239"; transcript_id "jcn_only_AD.1239"; gene_name "CUFF.995"; flanks "111127294-,110603621^"; structure "1^,2^"; splice_chain "111127294^,111031894^";
chr7	juncbase	jcn_only_AD	73106976	73111935	.	+	.	gene_id "jcn_only_AD.1240"; transcript_id "jcn_only_AD.1240"; gene_name ""; flanks "73106976-,73111935^"; structure "1^,2^"; splice_chain "73106976^,73107999^";
chr7	juncbase	jcn_only_AD	73108380	73111935	.	+	.	gene_id "jcn_only_AD.1241"; transcript_id "jcn_only_AD.1241"; gene_name ""; flanks "73108380-,73111935^"; structure "1^,2^"; splice_chain "73107999^,73108380^";
chr7	juncbase	jcn_only_AD	73111846	73111935	.	+	.	gene_id "jcn_only_AD.1242"; transcript_id "jcn_only_AD.1242"; gene_name ""; flanks "73111846-,73111935^"; structure "1^,2^"; splice_chain "73107999^,73111846^";
chr7	juncbase	intron_retention	148982587	148984656	.	+	.	gene_id "intron_retention.863"; transcript_id "intron_retention.863"; gene_name "CUFF.1030"; flanks "148982587-,148984656^"; structure "0,1^2-"; splice_chain ",148982587^148984656-";
chr7	juncbase	jcn_only_AD	37488463	37433520	.	-	.	gene_id "jcn_only_AD.1243"; transcript_id "jcn_only_AD.1243"; gene_name "CUFF.944"; flanks "37488463-,37433520^"; structure "1^,2^"; splice_chain "37488463^,37488278^";
chr7	juncbase	jcn_only_AD	150815719	150817074	.	+	.	gene_id "jcn_only_AD.1244"; transcript_id "jcn_only_AD.1244"; gene_name "CUFF.1033"; flanks "150815719-,150817074^"; structure "1^,2^"; splice_chain "150815719^,150816341^";
chr7	juncbase	jcn_only_AD	150815718	150817074	.	+	.	gene_id "jcn_only_AD.1245"; transcript_id "jcn_only_AD.1245"; gene_name "CUFF.1033"; flanks "150815718-,150817074^"; structure "1^,2^"; splice_chain "150815718^,150816341^";
chr7	juncbase	jcn_only_AD	102603980	102572380	.	-	.	gene_id "jcn_only_AD.1246"; transcript_id "jcn_only_AD.1246"; gene_name "CUFF.944,CUFF.984"; flanks "102603980-,102572380^"; structure "1^,2^"; splice_chain "102603980^,102573768^";
chr7	juncbase	alternative_donor	65579901	65592691	.	+	.	gene_id "alternative_donor.1067"; transcript_id "alternative_donor.1067"; gene_name "CUFF.956"; flanks "65579901-,65592691^"; structure "1^,2^"; splice_chain "65579901^,65579957^";
chr7	juncbase	alternative_donor	65591630	65592691	.	+	.	gene_id "alternative_donor.1068"; transcript_id "alternative_donor.1068"; gene_name "CUFF.956"; flanks "65591630-,65592691^"; structure "1^,2^"; splice_chain "65579957^,65591630^";
chr7	juncbase	alternative_donor	86595130	86594340	.	-	.	gene_id "alternative_donor.1069"; transcript_id "alternative_donor.1069"; gene_name ""; flanks "86595130-,86594340^"; structure "1^,2^"; splice_chain "86595130^,86595125^";
chr7	juncbase	cassette	75044512	75045259	.	+	.	gene_id "cassette.569"; transcript_id "cassette.569"; gene_name "CUFF.964"; flanks "75044512-,75045259^"; structure "0,1-2^"; splice_chain ",75044870-75045056^";
chr7	juncbase	alternative_acceptor	34724296	34818074	.	+	.	gene_id "alternative_acceptor.728"; transcript_id "alternative_acceptor.728"; gene_name "CUFF.942"; flanks "34724296-,34818074^"; structure "1-,2-"; splice_chain "34818074-,34818107-";
chr7	juncbase	alternative_acceptor	34724296	34725363	.	+	.	gene_id "alternative_acceptor.729"; transcript_id "alternative_acceptor.729"; gene_name "CUFF.942"; flanks "34724296-,34725363^"; structure "1-,2-"; splice_chain "34725363-,34818107-";
chr7	juncbase	jcn_only_AA	107207631	107211590	.	+	.	gene_id "jcn_only_AA.972"; transcript_id "jcn_only_AA.972"; gene_name "CUFF.987"; flanks "107207631-,107211590^"; structure "1-,2-"; splice_chain "107208200-,107211590-";
chr7	juncbase	alternative_donor	157647567	157655237	.	+	.	gene_id "alternative_donor.1070"; transcript_id "alternative_donor.1070"; gene_name "CUFF.1046"; flanks "157647567-,157655237^"; structure "1^,2^"; splice_chain "157647567^,157650240^";
chr7	juncbase	jcn_only_AA	150825771	150831487	.	+	.	gene_id "jcn_only_AA.973"; transcript_id "jcn_only_AA.973"; gene_name "CUFF.1033"; flanks "150825771-,150831487^"; structure "1-,2-"; splice_chain "150828159-,150831487-";
chr7	juncbase	cassette	100823323	100818092	.	-	.	gene_id "cassette.570"; transcript_id "cassette.570"; gene_name "CUFF.982"; flanks "100823323-,100818092^"; structure "0,1-2^"; splice_chain ",100822417-100822378^";
chr7	juncbase	alternative_acceptor	19153546	19156294	.	-	.	gene_id "alternative_acceptor.730"; transcript_id "alternative_acceptor.730"; gene_name "CUFF.938"; flanks "19153546-,19156294^"; structure "1-,2-"; splice_chain "19155754-,19153546-";
chr7	juncbase	jcn_only_AD	34888275	34889177	.	+	.	gene_id "jcn_only_AD.1247"; transcript_id "jcn_only_AD.1247"; gene_name "CUFF.942"; flanks "34888275-,34889177^"; structure "1^,2^"; splice_chain "34888275^,34889034^";
chr7	juncbase	alternative_acceptor	117424508	117431345	.	-	.	gene_id "alternative_acceptor.731"; transcript_id "alternative_acceptor.731"; gene_name "CUFF.1001"; flanks "117424508-,117431345^"; structure "1-,2-"; splice_chain "117426479-,117424508-";
chr7	juncbase	alternative_acceptor	107211711	107215633	.	+	.	gene_id "alternative_acceptor.732"; transcript_id "alternative_acceptor.732"; gene_name "CUFF.987"; flanks "107211711-,107215633^"; structure "1-,2-"; splice_chain "107214149-,107215633-";
chr7	juncbase	alternative_donor	102603980	102572380	.	-	.	gene_id "alternative_donor.1071"; transcript_id "alternative_donor.1071"; gene_name "CUFF.944,CUFF.984"; flanks "102603980-,102572380^"; structure "1^,2^"; splice_chain "102603980^,102573768^";
chr7	juncbase	alternative_donor	102256970	102251589	.	-	.	gene_id "alternative_donor.1072"; transcript_id "alternative_donor.1072"; gene_name "CUFF.983"; flanks "102256970-,102251589^"; structure "1^,2^"; splice_chain "102256970^,102252519^";
chr7	juncbase	alternative_donor	102257072	102251589	.	-	.	gene_id "alternative_donor.1073"; transcript_id "alternative_donor.1073"; gene_name "CUFF.983"; flanks "102257072-,102251589^"; structure "1^,2^"; splice_chain "102257072^,102252519^";
chr7	juncbase	alternative_donor	86571334	86569431	.	-	.	gene_id "alternative_donor.1074"; transcript_id "alternative_donor.1074"; gene_name "CUFF.970"; flanks "86571334-,86569431^"; structure "1^,2^"; splice_chain "86571334^,86570668^";
chr7	juncbase	cassette	102669798	102668005	.	-	.	gene_id "cassette.571"; transcript_id "cassette.571"; gene_name "CUFF.984"; flanks "102669798-,102668005^"; structure "0,1-2^"; splice_chain ",102669195-102669047^";
chr7	juncbase	jcn_only_AD	111201907	111161505	.	-	.	gene_id "jcn_only_AD.1248"; transcript_id "jcn_only_AD.1248"; gene_name "CUFF.995"; flanks "111201907-,111161505^"; structure "1^,2^"; splice_chain "111201907^,111172574^";
chr7	juncbase	alternative_donor	150784159	150813880	.	+	.	gene_id "alternative_donor.1075"; transcript_id "alternative_donor.1075"; gene_name "CUFF.1033"; flanks "150784159-,150813880^"; structure "1^,2^"; splice_chain "150784159^,150809331^";
chr7	juncbase	alternative_donor	150784291	150813880	.	+	.	gene_id "alternative_donor.1076"; transcript_id "alternative_donor.1076"; gene_name "CUFF.1033"; flanks "150784291-,150813880^"; structure "1^,2^"; splice_chain "150784291^,150809331^";
chr7	juncbase	alternative_donor	150813737	150813880	.	+	.	gene_id "alternative_donor.1077"; transcript_id "alternative_donor.1077"; gene_name "CUFF.1033"; flanks "150813737-,150813880^"; structure "1^,2^"; splice_chain "150809331^,150813737^";
chr7	juncbase	alternative_donor	150783147	150813880	.	+	.	gene_id "alternative_donor.1078"; transcript_id "alternative_donor.1078"; gene_name "CUFF.1033"; flanks "150783147-,150813880^"; structure "1^,2^"; splice_chain "150783147^,150809331^";
chr7	juncbase	alternative_donor	150787634	150813880	.	+	.	gene_id "alternative_donor.1079"; transcript_id "alternative_donor.1079"; gene_name "CUFF.1033"; flanks "150787634-,150813880^"; structure "1^,2^"; splice_chain "150787634^,150809331^";
chr7	juncbase	alternative_donor	150783096	150813880	.	+	.	gene_id "alternative_donor.1080"; transcript_id "alternative_donor.1080"; gene_name "CUFF.1033"; flanks "150783096-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150809331^";
chr7	juncbase	alternative_donor	150812728	150813880	.	+	.	gene_id "alternative_donor.1081"; transcript_id "alternative_donor.1081"; gene_name "CUFF.1033"; flanks "150812728-,150813880^"; structure "1^,2^"; splice_chain "150809331^,150812728^";
chr7	juncbase	jcn_only_AD	73101425	73106926	.	+	.	gene_id "jcn_only_AD.1249"; transcript_id "jcn_only_AD.1249"; gene_name ""; flanks "73101425-,73106926^"; structure "1^,2^"; splice_chain "73101230^,73101425^";
chr7	juncbase	jcn_only_AD	73105342	73106926	.	+	.	gene_id "jcn_only_AD.1250"; transcript_id "jcn_only_AD.1250"; gene_name ""; flanks "73105342-,73106926^"; structure "1^,2^"; splice_chain "73101230^,73105342^";
chr7	juncbase	cassette	30793554	30818048	.	+	.	gene_id "cassette.572"; transcript_id "cassette.572"; gene_name "CUFF.940"; flanks "30793554-,30818048^"; structure "0,1-2^"; splice_chain ",30805961-30806177^";
chr7	juncbase	alternative_donor	156685622	156629579	.	-	.	gene_id "alternative_donor.1082"; transcript_id "alternative_donor.1082"; gene_name "CUFF.1043"; flanks "156685622-,156629579^"; structure "1^,2^"; splice_chain "156685622^,156685164^";
chr7	juncbase	cassette	34724296	34867013	.	+	.	gene_id "cassette.573"; transcript_id "cassette.573"; gene_name "CUFF.942"; flanks "34724296-,34867013^"; structure "0,1-2^"; splice_chain ",34851382-34851475^";
chr7	juncbase	cassette	34818177	34867013	.	+	.	gene_id "cassette.574"; transcript_id "cassette.574"; gene_name "CUFF.942"; flanks "34818177-,34867013^"; structure "0,1-2^"; splice_chain ",34851382-34851475^";
chr7	juncbase	alternative_acceptor	6630106	6631334	.	+	.	gene_id "alternative_acceptor.733"; transcript_id "alternative_acceptor.733"; gene_name "CUFF.926"; flanks "6630106-,6631334^"; structure "1-,2-"; splice_chain "6631277-,6631334-";
chr7	juncbase	jcn_only_AD	107643294	107642178	.	-	.	gene_id "jcn_only_AD.1251"; transcript_id "jcn_only_AD.1251"; gene_name "CUFF.984"; flanks "107643294-,107642178^"; structure "1^,2^"; splice_chain "107643294^,107642572^";
chr7	juncbase	alternative_acceptor	6631498	6634066	.	+	.	gene_id "alternative_acceptor.734"; transcript_id "alternative_acceptor.734"; gene_name "CUFF.926,CUFF.964"; flanks "6631498-,6634066^"; structure "1-,2-"; splice_chain "6634043-,6634066-";
chr7	juncbase	jcn_only_AA	73108380	73111796	.	+	.	gene_id "jcn_only_AA.974"; transcript_id "jcn_only_AA.974"; gene_name ""; flanks "73108380-,73111796^"; structure "1-,2-"; splice_chain "73111796-,73111935-";
chr7	juncbase	jcn_only_AA	73108380	73110736	.	+	.	gene_id "jcn_only_AA.975"; transcript_id "jcn_only_AA.975"; gene_name ""; flanks "73108380-,73110736^"; structure "1-,2-"; splice_chain "73110736-,73111935-";
chr7	juncbase	jcn_only_AA	65579957	65610430	.	+	.	gene_id "jcn_only_AA.976"; transcript_id "jcn_only_AA.976"; gene_name "CUFF.1032,CUFF.956"; flanks "65579957-,65610430^"; structure "1-,2-"; splice_chain "65592691-,65610430-";
chr7	juncbase	alternative_donor	73275596	73279323	.	+	.	gene_id "alternative_donor.1083"; transcript_id "alternative_donor.1083"; gene_name "CUFF.960"; flanks "73275596-,73279323^"; structure "1^,2^"; splice_chain "73275596^,73275921^";
chr7	juncbase	intron_retention	150837203	150838985	.	+	.	gene_id "intron_retention.864"; transcript_id "intron_retention.864"; gene_name "CUFF.1033"; flanks "150837203-,150838985^"; structure "0,1^2-"; splice_chain ",150837203^150838985-";
chr7	juncbase	intron_retention	107220746	107224327	.	+	.	gene_id "intron_retention.865"; transcript_id "intron_retention.865"; gene_name "CUFF.988"; flanks "107220746-,107224327^"; structure "0,1^2-"; splice_chain ",107220746^107224327-";
chr7	juncbase	alternative_acceptor	107253877	107262075	.	+	.	gene_id "alternative_acceptor.735"; transcript_id "alternative_acceptor.735"; gene_name "CUFF.988"; flanks "107253877-,107262075^"; structure "1-,2-"; splice_chain "107258773-,107262075-";
chr7	juncbase	alternative_donor	129019590	129028897	.	+	.	gene_id "alternative_donor.1084"; transcript_id "alternative_donor.1084"; gene_name "CUFF.1020"; flanks "129019590-,129028897^"; structure "1^,2^"; splice_chain "129019590^,129028781^";
chr7	juncbase	jcn_only_AD	156516806	156476857	.	-	.	gene_id "jcn_only_AD.1252"; transcript_id "jcn_only_AD.1252"; gene_name ""; flanks "156516806-,156476857^"; structure "1^,2^"; splice_chain "156516806^,156480724^";
chr7	juncbase	jcn_only_AD	73101425	73105246	.	+	.	gene_id "jcn_only_AD.1253"; transcript_id "jcn_only_AD.1253"; gene_name ""; flanks "73101425-,73105246^"; structure "1^,2^"; splice_chain "73101230^,73101425^";
chr7	juncbase	jcn_only_AD	73098134	73105246	.	+	.	gene_id "jcn_only_AD.1254"; transcript_id "jcn_only_AD.1254"; gene_name ""; flanks "73098134-,73105246^"; structure "1^,2^"; splice_chain "73098134^,73101230^";
chr7	juncbase	jcn_only_AA	7222451	7273934	.	+	.	gene_id "jcn_only_AA.977"; transcript_id "jcn_only_AA.977"; gene_name "CUFF.920,CUFF.932"; flanks "7222451-,7273934^"; structure "1-,2-"; splice_chain "7249058-,7273934-";
chr7	juncbase	jcn_only_AA	73101230	73101329	.	+	.	gene_id "jcn_only_AA.978"; transcript_id "jcn_only_AA.978"; gene_name ""; flanks "73101230-,73101329^"; structure "1-,2-"; splice_chain "73101329-,73105246-";
chr7	juncbase	jcn_only_AA	73101230	73106926	.	+	.	gene_id "jcn_only_AA.979"; transcript_id "jcn_only_AA.979"; gene_name ""; flanks "73101230-,73106926^"; structure "1-,2-"; splice_chain "73105246-,73106926-";
chr7	juncbase	cassette	117396609	117385984	.	-	.	gene_id "cassette.575"; transcript_id "cassette.575"; gene_name "CUFF.1001"; flanks "117396609-,117385984^"; structure "0,1-2^"; splice_chain ",117386153-117386067^";
chr7	juncbase	intron_retention	107575860	107572938	.	-	.	gene_id "intron_retention.866"; transcript_id "intron_retention.866"; gene_name ""; flanks "107575860-,107572938^"; structure "0,1^2-"; splice_chain ",107575860^107572938-";
chr7	juncbase	intron_retention	107220746	107221091	.	+	.	gene_id "intron_retention.867"; transcript_id "intron_retention.867"; gene_name "CUFF.988"; flanks "107220746-,107221091^"; structure "0,1^2-"; splice_chain ",107220746^107221091-";
chr7	juncbase	cassette	102696091	102669865	.	-	.	gene_id "cassette.576"; transcript_id "cassette.576"; gene_name "CUFF.984"; flanks "102696091-,102669865^"; structure "0,1-2^"; splice_chain ",102695625-102695535^";
chr7	juncbase	alternative_acceptor	156471044	156471771	.	-	.	gene_id "alternative_acceptor.736"; transcript_id "alternative_acceptor.736"; gene_name "CUFF.1043"; flanks "156471044-,156471771^"; structure "1-,2-"; splice_chain "156471044-,156469377-";
chr7	juncbase	alternative_acceptor	156469318	156471771	.	-	.	gene_id "alternative_acceptor.737"; transcript_id "alternative_acceptor.737"; gene_name "CUFF.1043"; flanks "156469318-,156471771^"; structure "1-,2-"; splice_chain "156469377-,156469318-";
chr7	juncbase	cassette	38902145	38860865	.	-	.	gene_id "cassette.577"; transcript_id "cassette.577"; gene_name "CUFF.948"; flanks "38902145-,38860865^"; structure "0,1-2^"; splice_chain ",38869928-38869854^";
chr7	juncbase	cassette	65592727	65595731	.	+	.	gene_id "cassette.578"; transcript_id "cassette.578"; gene_name "CUFF.956"; flanks "65592727-,65595731^"; structure "0,1-2^"; splice_chain ",65595114-65595235^";
chr7	juncbase	intron_retention	148990583	148990842	.	+	.	gene_id "intron_retention.868"; transcript_id "intron_retention.868"; gene_name ""; flanks "148990583-,148990842^"; structure "0,1^2-"; splice_chain ",148990583^148990842-";
chr7	juncbase	cassette	38836345	38835211	.	-	.	gene_id "cassette.579"; transcript_id "cassette.579"; gene_name "CUFF.948"; flanks "38836345-,38835211^"; structure "0,1-2^"; splice_chain ",38836126-38836015^";
chr7	juncbase	jcn_only_AD	107211711	107215633	.	+	.	gene_id "jcn_only_AD.1255"; transcript_id "jcn_only_AD.1255"; gene_name "CUFF.987"; flanks "107211711-,107215633^"; structure "1^,2^"; splice_chain "107211711^,107214328^";
chr7	juncbase	jcn_only_AD	107214266	107215633	.	+	.	gene_id "jcn_only_AD.1256"; transcript_id "jcn_only_AD.1256"; gene_name "CUFF.987"; flanks "107214266-,107215633^"; structure "1^,2^"; splice_chain "107214266^,107214328^";
chr7	juncbase	alternative_donor	102256970	102251589	.	-	.	gene_id "alternative_donor.1085"; transcript_id "alternative_donor.1085"; gene_name ""; flanks "102256970-,102251589^"; structure "1^,2^"; splice_chain "102257072^,102256970^";
chr7	juncbase	alternative_donor	102252519	102251589	.	-	.	gene_id "alternative_donor.1086"; transcript_id "alternative_donor.1086"; gene_name ""; flanks "102252519-,102251589^"; structure "1^,2^"; splice_chain "102257072^,102252519^";
chr7	juncbase	jcn_only_AD	107577538	107576101	.	-	.	gene_id "jcn_only_AD.1257"; transcript_id "jcn_only_AD.1257"; gene_name "CUFF.970"; flanks "107577538-,107576101^"; structure "1^,2^"; splice_chain "107577538^,107576724^";
chr7	juncbase	jcn_only_AA	136554165	136635750	.	+	.	gene_id "jcn_only_AA.980"; transcript_id "jcn_only_AA.980"; gene_name ""; flanks "136554165-,136635750^"; structure "1-,2-"; splice_chain "136635750-,136699567-";
chr7	juncbase	jcn_only_AA	136554165	136676934	.	+	.	gene_id "jcn_only_AA.981"; transcript_id "jcn_only_AA.981"; gene_name ""; flanks "136554165-,136676934^"; structure "1-,2-"; splice_chain "136676934-,136699567-";
chr7	juncbase	jcn_only_AA	136554165	136554552	.	+	.	gene_id "jcn_only_AA.982"; transcript_id "jcn_only_AA.982"; gene_name ""; flanks "136554165-,136554552^"; structure "1-,2-"; splice_chain "136554552-,136699567-";
chr7	juncbase	jcn_only_AD	65579901	65592691	.	+	.	gene_id "jcn_only_AD.1258"; transcript_id "jcn_only_AD.1258"; gene_name "CUFF.956"; flanks "65579901-,65592691^"; structure "1^,2^"; splice_chain "65579901^,65579957^";
chr7	juncbase	jcn_only_AD	65591630	65592691	.	+	.	gene_id "jcn_only_AD.1259"; transcript_id "jcn_only_AD.1259"; gene_name "CUFF.956"; flanks "65591630-,65592691^"; structure "1^,2^"; splice_chain "65579957^,65591630^";
chr7	juncbase	cassette	38948754	38908853	.	-	.	gene_id "cassette.580"; transcript_id "cassette.580"; gene_name "CUFF.948"; flanks "38948754-,38908853^"; structure "0,1-2^"; splice_chain ",38937729-38937691^";
chr7	juncbase	alternative_acceptor	128865280	129019482	.	+	.	gene_id "alternative_acceptor.738"; transcript_id "alternative_acceptor.738"; gene_name ""; flanks "128865280-,129019482^"; structure "1-,2-"; splice_chain "129019479-,129019482-";
chr7	juncbase	intron_retention	44250530	44250622	.	+	.	gene_id "intron_retention.869"; transcript_id "intron_retention.869"; gene_name ""; flanks "44250530-,44250622^"; structure "0,1^2-"; splice_chain ",44250530^44250622-";
chr7	juncbase	cassette	156685622	156626486	.	-	.	gene_id "cassette.581"; transcript_id "cassette.581"; gene_name "CUFF.1043"; flanks "156685622-,156626486^"; structure "0,1-2^"; splice_chain ",156629579-156629507^";
chr7	juncbase	intron_retention	107575860	107572822	.	-	.	gene_id "intron_retention.870"; transcript_id "intron_retention.870"; gene_name ""; flanks "107575860-,107572822^"; structure "0,1^2-"; splice_chain ",107575860^107572822-";
chr7	juncbase	jcn_only_AD	150784159	150813880	.	+	.	gene_id "jcn_only_AD.1260"; transcript_id "jcn_only_AD.1260"; gene_name "CUFF.1033"; flanks "150784159-,150813880^"; structure "1^,2^"; splice_chain "150784159^,150787634^";
chr7	juncbase	jcn_only_AD	150784291	150813880	.	+	.	gene_id "jcn_only_AD.1261"; transcript_id "jcn_only_AD.1261"; gene_name "CUFF.1033"; flanks "150784291-,150813880^"; structure "1^,2^"; splice_chain "150784291^,150787634^";
chr7	juncbase	jcn_only_AD	150813737	150813880	.	+	.	gene_id "jcn_only_AD.1262"; transcript_id "jcn_only_AD.1262"; gene_name "CUFF.1033"; flanks "150813737-,150813880^"; structure "1^,2^"; splice_chain "150787634^,150813737^";
chr7	juncbase	jcn_only_AD	150783147	150813880	.	+	.	gene_id "jcn_only_AD.1263"; transcript_id "jcn_only_AD.1263"; gene_name "CUFF.1033"; flanks "150783147-,150813880^"; structure "1^,2^"; splice_chain "150783147^,150787634^";
chr7	juncbase	jcn_only_AD	150809331	150813880	.	+	.	gene_id "jcn_only_AD.1264"; transcript_id "jcn_only_AD.1264"; gene_name "CUFF.1033"; flanks "150809331-,150813880^"; structure "1^,2^"; splice_chain "150787634^,150809331^";
chr7	juncbase	jcn_only_AD	150783096	150813880	.	+	.	gene_id "jcn_only_AD.1265"; transcript_id "jcn_only_AD.1265"; gene_name "CUFF.1033"; flanks "150783096-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150787634^";
chr7	juncbase	jcn_only_AD	150812728	150813880	.	+	.	gene_id "jcn_only_AD.1266"; transcript_id "jcn_only_AD.1266"; gene_name "CUFF.1033"; flanks "150812728-,150813880^"; structure "1^,2^"; splice_chain "150787634^,150812728^";
chr7	juncbase	jcn_only_AD	73101425	73105246	.	+	.	gene_id "jcn_only_AD.1267"; transcript_id "jcn_only_AD.1267"; gene_name ""; flanks "73101425-,73105246^"; structure "1^,2^"; splice_chain "73098134^,73101425^";
chr7	juncbase	jcn_only_AD	73101230	73105246	.	+	.	gene_id "jcn_only_AD.1268"; transcript_id "jcn_only_AD.1268"; gene_name ""; flanks "73101230-,73105246^"; structure "1^,2^"; splice_chain "73098134^,73101230^";
chr7	juncbase	jcn_only_AD	73097713	73100966	.	+	.	gene_id "jcn_only_AD.1269"; transcript_id "jcn_only_AD.1269"; gene_name "CUFF.959"; flanks "73097713-,73100966^"; structure "1^,2^"; splice_chain "73097713^,73098231^";
chr7	juncbase	jcn_only_AD	73098330	73100966	.	+	.	gene_id "jcn_only_AD.1270"; transcript_id "jcn_only_AD.1270"; gene_name "CUFF.959"; flanks "73098330-,73100966^"; structure "1^,2^"; splice_chain "73098231^,73098330^";
chr7	juncbase	jcn_only_AD	73098253	73100966	.	+	.	gene_id "jcn_only_AD.1271"; transcript_id "jcn_only_AD.1271"; gene_name "CUFF.959"; flanks "73098253-,73100966^"; structure "1^,2^"; splice_chain "73098231^,73098253^";
chr7	juncbase	jcn_only_AD	73098134	73100966	.	+	.	gene_id "jcn_only_AD.1272"; transcript_id "jcn_only_AD.1272"; gene_name "CUFF.959"; flanks "73098134-,73100966^"; structure "1^,2^"; splice_chain "73098134^,73098231^";
chr7	juncbase	alternative_donor	37262220	37256300	.	-	.	gene_id "alternative_donor.1087"; transcript_id "alternative_donor.1087"; gene_name "CUFF.944"; flanks "37262220-,37256300^"; structure "1^,2^"; splice_chain "37262220^,37257317^";
chr7	juncbase	cassette	128850954	128851477	.	+	.	gene_id "cassette.582"; transcript_id "cassette.582"; gene_name "CUFF.1021"; flanks "128850954-,128851477^"; structure "0,1-2^"; splice_chain ",128851224-128851351^";
chr7	juncbase	jcn_only_AD	86550079	86548626	.	-	.	gene_id "jcn_only_AD.1273"; transcript_id "jcn_only_AD.1273"; gene_name ""; flanks "86550079-,86548626^"; structure "1^,2^"; splice_chain "86554844^,86550079^";
chr7	juncbase	jcn_only_AD	86549024	86548626	.	-	.	gene_id "jcn_only_AD.1274"; transcript_id "jcn_only_AD.1274"; gene_name ""; flanks "86549024-,86548626^"; structure "1^,2^"; splice_chain "86554844^,86549024^";
chr7	juncbase	alternative_donor	38816279	38813844	.	-	.	gene_id "alternative_donor.1088"; transcript_id "alternative_donor.1088"; gene_name "CUFF.948"; flanks "38816279-,38813844^"; structure "1^,2^"; splice_chain "38816279^,38814789^";
chr7	juncbase	jcn_only_AA	127251730	127251999	.	-	.	gene_id "jcn_only_AA.983"; transcript_id "jcn_only_AA.983"; gene_name "CUFF.1019"; flanks "127251730-,127251999^"; structure "1-,2-"; splice_chain "127251902-,127251730-";
chr7	juncbase	alternative_acceptor	22162139	22165222	.	-	.	gene_id "alternative_acceptor.739"; transcript_id "alternative_acceptor.739"; gene_name "CUFF.939"; flanks "22162139-,22165222^"; structure "1-,2-"; splice_chain "22165039-,22162139-";
chr7	juncbase	jcn_only_AA	129008392	129019482	.	+	.	gene_id "jcn_only_AA.984"; transcript_id "jcn_only_AA.984"; gene_name "CUFF.1020"; flanks "129008392-,129019482^"; structure "1-,2-"; splice_chain "129019479-,129019482-";
chr7	juncbase	alternative_donor	117512158	117501370	.	-	.	gene_id "alternative_donor.1089"; transcript_id "alternative_donor.1089"; gene_name "CUFF.1001"; flanks "117512158-,117501370^"; structure "1^,2^"; splice_chain "117512158^,117511644^";
chr7	juncbase	alternative_donor	117514055	117501370	.	-	.	gene_id "alternative_donor.1090"; transcript_id "alternative_donor.1090"; gene_name "CUFF.1001"; flanks "117514055-,117501370^"; structure "1^,2^"; splice_chain "117514055^,117511644^";
chr7	juncbase	alternative_acceptor	37256300	37262220	.	-	.	gene_id "alternative_acceptor.740"; transcript_id "alternative_acceptor.740"; gene_name "CUFF.944"; flanks "37256300-,37262220^"; structure "1-,2-"; splice_chain "37257361-,37256300-";
chr7	juncbase	cassette	157647567	157649982	.	+	.	gene_id "cassette.583"; transcript_id "cassette.583"; gene_name "CUFF.1046"; flanks "157647567-,157649982^"; structure "0,1-2^"; splice_chain ",157648619-157648822^";
chr7	juncbase	alternative_donor	136554165	136699567	.	+	.	gene_id "alternative_donor.1091"; transcript_id "alternative_donor.1091"; gene_name "CUFF.1027"; flanks "136554165-,136699567^"; structure "1^,2^"; splice_chain "136554165^,136677011^";
chr7	juncbase	jcn_only_AA	107642178	107643294	.	-	.	gene_id "jcn_only_AA.985"; transcript_id "jcn_only_AA.985"; gene_name ""; flanks "107642178-,107643294^"; structure "1-,2-"; splice_chain "107642829-,107642178-";
chr7	juncbase	alternative_donor	37488463	37433520	.	-	.	gene_id "alternative_donor.1092"; transcript_id "alternative_donor.1092"; gene_name "CUFF.944"; flanks "37488463-,37433520^"; structure "1^,2^"; splice_chain "37488463^,37488278^";
chr7	juncbase	alternative_acceptor	127251039	127251589	.	-	.	gene_id "alternative_acceptor.741"; transcript_id "alternative_acceptor.741"; gene_name "CUFF.1019"; flanks "127251039-,127251589^"; structure "1-,2-"; splice_chain "127251260-,127251039-";
chr7	juncbase	alternative_donor	107256834	107258773	.	+	.	gene_id "alternative_donor.1093"; transcript_id "alternative_donor.1093"; gene_name "CUFF.988"; flanks "107256834-,107258773^"; structure "1^,2^"; splice_chain "107254177^,107256834^";
chr7	juncbase	alternative_donor	107253877	107258773	.	+	.	gene_id "alternative_donor.1094"; transcript_id "alternative_donor.1094"; gene_name "CUFF.988"; flanks "107253877-,107258773^"; structure "1^,2^"; splice_chain "107253877^,107254177^";
chr7	juncbase	jcn_only_AA	156556489	156589083	.	-	.	gene_id "jcn_only_AA.986"; transcript_id "jcn_only_AA.986"; gene_name ""; flanks "156556489-,156589083^"; structure "1-,2-"; splice_chain "156572426-,156556489-";
chr7	juncbase	jcn_only_AD	156540618	156526951	.	-	.	gene_id "jcn_only_AD.1275"; transcript_id "jcn_only_AD.1275"; gene_name ""; flanks "156540618-,156526951^"; structure "1^,2^"; splice_chain "156549087^,156540618^";
chr7	juncbase	jcn_only_AD	156529187	156526951	.	-	.	gene_id "jcn_only_AD.1276"; transcript_id "jcn_only_AD.1276"; gene_name ""; flanks "156529187-,156526951^"; structure "1^,2^"; splice_chain "156549087^,156529187^";
chr7	juncbase	alternative_acceptor	150817832	150820881	.	+	.	gene_id "alternative_acceptor.742"; transcript_id "alternative_acceptor.742"; gene_name "CUFF.1020"; flanks "150817832-,150820881^"; structure "1-,2-"; splice_chain "150819812-,150820881-";
chr7	juncbase	jcn_only_AD	38902145	38869928	.	-	.	gene_id "jcn_only_AD.1277"; transcript_id "jcn_only_AD.1277"; gene_name "CUFF.948"; flanks "38902145-,38869928^"; structure "1^,2^"; splice_chain "38902145^,38870816^";
chr7	juncbase	alternative_donor	150784159	150813880	.	+	.	gene_id "alternative_donor.1095"; transcript_id "alternative_donor.1095"; gene_name "CUFF.1033"; flanks "150784159-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150784159^";
chr7	juncbase	alternative_donor	150784291	150813880	.	+	.	gene_id "alternative_donor.1096"; transcript_id "alternative_donor.1096"; gene_name "CUFF.1033"; flanks "150784291-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150784291^";
chr7	juncbase	alternative_donor	150813737	150813880	.	+	.	gene_id "alternative_donor.1097"; transcript_id "alternative_donor.1097"; gene_name "CUFF.1033"; flanks "150813737-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150813737^";
chr7	juncbase	alternative_donor	150783147	150813880	.	+	.	gene_id "alternative_donor.1098"; transcript_id "alternative_donor.1098"; gene_name "CUFF.1033"; flanks "150783147-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150783147^";
chr7	juncbase	alternative_donor	150787634	150813880	.	+	.	gene_id "alternative_donor.1099"; transcript_id "alternative_donor.1099"; gene_name "CUFF.1033"; flanks "150787634-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150787634^";
chr7	juncbase	alternative_donor	150809331	150813880	.	+	.	gene_id "alternative_donor.1100"; transcript_id "alternative_donor.1100"; gene_name "CUFF.1033"; flanks "150809331-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150809331^";
chr7	juncbase	alternative_donor	150812728	150813880	.	+	.	gene_id "alternative_donor.1101"; transcript_id "alternative_donor.1101"; gene_name "CUFF.1033"; flanks "150812728-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150812728^";
chr7	juncbase	alternative_acceptor	150825771	150831487	.	+	.	gene_id "alternative_acceptor.743"; transcript_id "alternative_acceptor.743"; gene_name "CUFF.1033"; flanks "150825771-,150831487^"; structure "1-,2-"; splice_chain "150828159-,150831487-";
chr7	juncbase	jcn_only_AA	136554165	136699567	.	+	.	gene_id "jcn_only_AA.987"; transcript_id "jcn_only_AA.987"; gene_name "CUFF.1027"; flanks "136554165-,136699567^"; structure "1-,2-"; splice_chain "136676934-,136699567-";
chr7	juncbase	jcn_only_AA	136554165	136635750	.	+	.	gene_id "jcn_only_AA.988"; transcript_id "jcn_only_AA.988"; gene_name "CUFF.1027"; flanks "136554165-,136635750^"; structure "1-,2-"; splice_chain "136635750-,136676934-";
chr7	juncbase	jcn_only_AA	136554165	136554552	.	+	.	gene_id "jcn_only_AA.989"; transcript_id "jcn_only_AA.989"; gene_name "CUFF.1027"; flanks "136554165-,136554552^"; structure "1-,2-"; splice_chain "136554552-,136676934-";
chr7	juncbase	jcn_only_AA	34724296	34818074	.	+	.	gene_id "jcn_only_AA.990"; transcript_id "jcn_only_AA.990"; gene_name "CUFF.942"; flanks "34724296-,34818074^"; structure "1-,2-"; splice_chain "34725363-,34818074-";
chr7	juncbase	jcn_only_AA	34724296	34818107	.	+	.	gene_id "jcn_only_AA.991"; transcript_id "jcn_only_AA.991"; gene_name "CUFF.942"; flanks "34724296-,34818107^"; structure "1-,2-"; splice_chain "34725363-,34818107-";
chr7	juncbase	alternative_donor	150784159	150813880	.	+	.	gene_id "alternative_donor.1102"; transcript_id "alternative_donor.1102"; gene_name "CUFF.1033"; flanks "150784159-,150813880^"; structure "1^,2^"; splice_chain "150784159^,150812728^";
chr7	juncbase	alternative_donor	150784291	150813880	.	+	.	gene_id "alternative_donor.1103"; transcript_id "alternative_donor.1103"; gene_name "CUFF.1033"; flanks "150784291-,150813880^"; structure "1^,2^"; splice_chain "150784291^,150812728^";
chr7	juncbase	alternative_donor	150813737	150813880	.	+	.	gene_id "alternative_donor.1104"; transcript_id "alternative_donor.1104"; gene_name "CUFF.1033"; flanks "150813737-,150813880^"; structure "1^,2^"; splice_chain "150812728^,150813737^";
chr7	juncbase	alternative_donor	150783147	150813880	.	+	.	gene_id "alternative_donor.1105"; transcript_id "alternative_donor.1105"; gene_name "CUFF.1033"; flanks "150783147-,150813880^"; structure "1^,2^"; splice_chain "150783147^,150812728^";
chr7	juncbase	alternative_donor	150787634	150813880	.	+	.	gene_id "alternative_donor.1106"; transcript_id "alternative_donor.1106"; gene_name "CUFF.1033"; flanks "150787634-,150813880^"; structure "1^,2^"; splice_chain "150787634^,150812728^";
chr7	juncbase	alternative_donor	150809331	150813880	.	+	.	gene_id "alternative_donor.1107"; transcript_id "alternative_donor.1107"; gene_name "CUFF.1033"; flanks "150809331-,150813880^"; structure "1^,2^"; splice_chain "150809331^,150812728^";
chr7	juncbase	alternative_donor	150783096	150813880	.	+	.	gene_id "alternative_donor.1108"; transcript_id "alternative_donor.1108"; gene_name "CUFF.1033"; flanks "150783096-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150812728^";
chr7	juncbase	jcn_only_AA	156627289	156629507	.	-	.	gene_id "jcn_only_AA.992"; transcript_id "jcn_only_AA.992"; gene_name "CUFF.1043"; flanks "156627289-,156629507^"; structure "1-,2-"; splice_chain "156627289-,156556489-";
chr7	juncbase	jcn_only_AA	156627269	156629507	.	-	.	gene_id "jcn_only_AA.993"; transcript_id "jcn_only_AA.993"; gene_name "CUFF.1043"; flanks "156627269-,156629507^"; structure "1-,2-"; splice_chain "156627269-,156556489-";
chr7	juncbase	jcn_only_AA	156626486	156629507	.	-	.	gene_id "jcn_only_AA.994"; transcript_id "jcn_only_AA.994"; gene_name "CUFF.1043"; flanks "156626486-,156629507^"; structure "1-,2-"; splice_chain "156626486-,156556489-";
chr7	juncbase	jcn_only_AA	129015767	129019482	.	+	.	gene_id "jcn_only_AA.995"; transcript_id "jcn_only_AA.995"; gene_name ""; flanks "129015767-,129019482^"; structure "1-,2-"; splice_chain "129019479-,129019482-";
chr7	juncbase	jcn_only_AD	117431345	117424508	.	-	.	gene_id "jcn_only_AD.1278"; transcript_id "jcn_only_AD.1278"; gene_name "CUFF.1001"; flanks "117431345-,117424508^"; structure "1^,2^"; splice_chain "117431345^,117431182^";
chr7	juncbase	alternative_donor	86554844	86548626	.	-	.	gene_id "alternative_donor.1109"; transcript_id "alternative_donor.1109"; gene_name "CUFF.970"; flanks "86554844-,86548626^"; structure "1^,2^"; splice_chain "86554844^,86550079^";
chr7	juncbase	alternative_donor	86549024	86548626	.	-	.	gene_id "alternative_donor.1110"; transcript_id "alternative_donor.1110"; gene_name "CUFF.970"; flanks "86549024-,86548626^"; structure "1^,2^"; splice_chain "86550079^,86549024^";
chr7	juncbase	alternative_donor	107254177	107258773	.	+	.	gene_id "alternative_donor.1111"; transcript_id "alternative_donor.1111"; gene_name "CUFF.988"; flanks "107254177-,107258773^"; structure "1^,2^"; splice_chain "107254177^,107256834^";
chr7	juncbase	alternative_donor	107253877	107258773	.	+	.	gene_id "alternative_donor.1112"; transcript_id "alternative_donor.1112"; gene_name "CUFF.988"; flanks "107253877-,107258773^"; structure "1^,2^"; splice_chain "107253877^,107256834^";
chr7	juncbase	cassette	75066793	75054991	.	-	.	gene_id "cassette.584"; transcript_id "cassette.584"; gene_name "CUFF.966"; flanks "75066793-,75054991^"; structure "0,1-2^"; splice_chain ",75055735-75055644^";
chr7	juncbase	cassette	74984790	74981240	.	-	.	gene_id "cassette.585"; transcript_id "cassette.585"; gene_name "CUFF.963"; flanks "74984790-,74981240^"; structure "0,1-2^"; splice_chain ",74982902-74982816^";
chr7	juncbase	jcn_only_AA	107215755	107216854	.	+	.	gene_id "jcn_only_AA.996"; transcript_id "jcn_only_AA.996"; gene_name "CUFF.987"; flanks "107215755-,107216854^"; structure "1-,2-"; splice_chain "107216811-,107216854-";
chr7	juncbase	alternative_acceptor	110603621	111127294	.	-	.	gene_id "alternative_acceptor.744"; transcript_id "alternative_acceptor.744"; gene_name "CUFF.995"; flanks "110603621-,111127294^"; structure "1-,2-"; splice_chain "111123784-,110603621-";
chr7	juncbase	intron_retention	44247797	44250622	.	+	.	gene_id "intron_retention.871"; transcript_id "intron_retention.871"; gene_name "CUFF.950"; flanks "44247797-,44250622^"; structure "0,1^2-"; splice_chain ",44247797^44250622-";
chr7	juncbase	jcn_only_AD	86554844	86548626	.	-	.	gene_id "jcn_only_AD.1279"; transcript_id "jcn_only_AD.1279"; gene_name "CUFF.970"; flanks "86554844-,86548626^"; structure "1^,2^"; splice_chain "86554844^,86550079^";
chr7	juncbase	jcn_only_AD	86549024	86548626	.	-	.	gene_id "jcn_only_AD.1280"; transcript_id "jcn_only_AD.1280"; gene_name "CUFF.970"; flanks "86549024-,86548626^"; structure "1^,2^"; splice_chain "86550079^,86549024^";
chr7	juncbase	alternative_acceptor	156627289	156629507	.	-	.	gene_id "alternative_acceptor.745"; transcript_id "alternative_acceptor.745"; gene_name "CUFF.1043"; flanks "156627289-,156629507^"; structure "1-,2-"; splice_chain "156627289-,156556489-";
chr7	juncbase	alternative_acceptor	156627269	156629507	.	-	.	gene_id "alternative_acceptor.746"; transcript_id "alternative_acceptor.746"; gene_name "CUFF.1043"; flanks "156627269-,156629507^"; structure "1-,2-"; splice_chain "156627269-,156556489-";
chr7	juncbase	alternative_acceptor	156626486	156629507	.	-	.	gene_id "alternative_acceptor.747"; transcript_id "alternative_acceptor.747"; gene_name "CUFF.1043"; flanks "156626486-,156629507^"; structure "1-,2-"; splice_chain "156626486-,156556489-";
chr7	juncbase	alternative_acceptor	1778838	1781845	.	-	.	gene_id "alternative_acceptor.748"; transcript_id "alternative_acceptor.748"; gene_name "CUFF.923"; flanks "1778838-,1781845^"; structure "1-,2-"; splice_chain "1779171-,1778838-";
chr7	juncbase	cassette	150831655	150838985	.	+	.	gene_id "cassette.586"; transcript_id "cassette.586"; gene_name "CUFF.1033"; flanks "150831655-,150838985^"; structure "0,1-2^"; splice_chain ",150837066-150837203^";
chr7	juncbase	alternative_acceptor	156469377	156471771	.	-	.	gene_id "alternative_acceptor.749"; transcript_id "alternative_acceptor.749"; gene_name "CUFF.1043"; flanks "156469377-,156471771^"; structure "1-,2-"; splice_chain "156469377-,156469318-";
chr7	juncbase	alternative_acceptor	156471044	156471771	.	-	.	gene_id "alternative_acceptor.750"; transcript_id "alternative_acceptor.750"; gene_name "CUFF.1043"; flanks "156471044-,156471771^"; structure "1-,2-"; splice_chain "156471044-,156469318-";
chr7	juncbase	jcn_only_AD	38816279	38813844	.	-	.	gene_id "jcn_only_AD.1281"; transcript_id "jcn_only_AD.1281"; gene_name "CUFF.948"; flanks "38816279-,38813844^"; structure "1^,2^"; splice_chain "38816279^,38814789^";
chr7	juncbase	jcn_only_AA	150817832	150820881	.	+	.	gene_id "jcn_only_AA.997"; transcript_id "jcn_only_AA.997"; gene_name "CUFF.1020"; flanks "150817832-,150820881^"; structure "1-,2-"; splice_chain "150819812-,150820881-";
chr7	juncbase	intron_retention	107220746	107221204	.	+	.	gene_id "intron_retention.872"; transcript_id "intron_retention.872"; gene_name "CUFF.988"; flanks "107220746-,107221204^"; structure "0,1^2-"; splice_chain ",107220746^107221204-";
chr7	juncbase	jcn_only_AA	156471044	156471771	.	-	.	gene_id "jcn_only_AA.998"; transcript_id "jcn_only_AA.998"; gene_name "CUFF.1043"; flanks "156471044-,156471771^"; structure "1-,2-"; splice_chain "156471044-,156469377-";
chr7	juncbase	jcn_only_AA	156469318	156471771	.	-	.	gene_id "jcn_only_AA.999"; transcript_id "jcn_only_AA.999"; gene_name "CUFF.1043"; flanks "156469318-,156471771^"; structure "1-,2-"; splice_chain "156469377-,156469318-";
chr7	juncbase	jcn_only_AD	107207631	107211590	.	+	.	gene_id "jcn_only_AD.1282"; transcript_id "jcn_only_AD.1282"; gene_name "CUFF.987"; flanks "107207631-,107211590^"; structure "1^,2^"; splice_chain "107207631^,107208310^";
chr7	juncbase	jcn_only_AD	38971878	38937729	.	-	.	gene_id "jcn_only_AD.1283"; transcript_id "jcn_only_AD.1283"; gene_name ""; flanks "38971878-,38937729^"; structure "1^,2^"; splice_chain "38971878^,38948754^";
chr7	juncbase	jcn_only_AD	38969072	38937729	.	-	.	gene_id "jcn_only_AD.1284"; transcript_id "jcn_only_AD.1284"; gene_name ""; flanks "38969072-,38937729^"; structure "1^,2^"; splice_chain "38969072^,38948754^";
chr7	juncbase	jcn_only_AA	86569431	86571334	.	-	.	gene_id "jcn_only_AA.1000"; transcript_id "jcn_only_AA.1000"; gene_name "CUFF.970"; flanks "86569431-,86571334^"; structure "1-,2-"; splice_chain "86570701-,86569431-";
chr7	juncbase	intron_retention	117400489	117398024	.	-	.	gene_id "intron_retention.873"; transcript_id "intron_retention.873"; gene_name "CUFF.1001"; flanks "117400489-,117398024^"; structure "0,1^2-"; splice_chain ",117400489^117398024-";
chr7	juncbase	alternative_donor	34888275	34889177	.	+	.	gene_id "alternative_donor.1113"; transcript_id "alternative_donor.1113"; gene_name "CUFF.942"; flanks "34888275-,34889177^"; structure "1^,2^"; splice_chain "34888275^,34889034^";
chr7	juncbase	intron_retention	73098134	73105246	.	+	.	gene_id "intron_retention.874"; transcript_id "intron_retention.874"; gene_name ""; flanks "73098134-,73105246^"; structure "0,1^2-"; splice_chain ",73098134^73105246-";
chr7	juncbase	alternative_donor	22396449	22357656	.	-	.	gene_id "alternative_donor.1114"; transcript_id "alternative_donor.1114"; gene_name "CUFF.939,CUFF.944"; flanks "22396449-,22357656^"; structure "1^,2^"; splice_chain "22396449^,22395597^";
chr7	juncbase	alternative_donor	75070232	75068502	.	-	.	gene_id "alternative_donor.1115"; transcript_id "alternative_donor.1115"; gene_name ""; flanks "75070232-,75068502^"; structure "1^,2^"; splice_chain "75070232^,75069884^";
chr7	juncbase	cassette	86541388	86539317	.	-	.	gene_id "cassette.587"; transcript_id "cassette.587"; gene_name "CUFF.970"; flanks "86541388-,86539317^"; structure "0,1-2^"; splice_chain ",86541011-86540938^";
chr7	juncbase	jcn_only_AA	107234550	107236314	.	+	.	gene_id "jcn_only_AA.1001"; transcript_id "jcn_only_AA.1001"; gene_name "CUFF.988"; flanks "107234550-,107236314^"; structure "1-,2-"; splice_chain "107236312-,107236314-";
chr7	juncbase	jcn_only_AA	73106976	73107659	.	+	.	gene_id "jcn_only_AA.1002"; transcript_id "jcn_only_AA.1002"; gene_name ""; flanks "73106976-,73107659^"; structure "1-,2-"; splice_chain "73107659-,73277203-";
chr7	juncbase	jcn_only_AA	73106976	73111935	.	+	.	gene_id "jcn_only_AA.1003"; transcript_id "jcn_only_AA.1003"; gene_name ""; flanks "73106976-,73111935^"; structure "1-,2-"; splice_chain "73111935-,73277203-";
chr7	juncbase	alternative_donor	117431345	117424508	.	-	.	gene_id "alternative_donor.1116"; transcript_id "alternative_donor.1116"; gene_name "CUFF.1001"; flanks "117431345-,117424508^"; structure "1^,2^"; splice_chain "117431345^,117431182^";
chr7	juncbase	jcn_only_AA	34724296	34725363	.	+	.	gene_id "jcn_only_AA.1004"; transcript_id "jcn_only_AA.1004"; gene_name "CUFF.942"; flanks "34724296-,34725363^"; structure "1-,2-"; splice_chain "34725363-,34818074-";
chr7	juncbase	jcn_only_AA	34724296	34818107	.	+	.	gene_id "jcn_only_AA.1005"; transcript_id "jcn_only_AA.1005"; gene_name "CUFF.942"; flanks "34724296-,34818107^"; structure "1-,2-"; splice_chain "34818074-,34818107-";
chr7	juncbase	intron_retention	75045056	75045259	.	+	.	gene_id "intron_retention.875"; transcript_id "intron_retention.875"; gene_name "CUFF.964"; flanks "75045056-,75045259^"; structure "0,1^2-"; splice_chain ",75045056^75045259-";
chr7	juncbase	jcn_only_AD	73098231	73100966	.	+	.	gene_id "jcn_only_AD.1285"; transcript_id "jcn_only_AD.1285"; gene_name "CUFF.959"; flanks "73098231-,73100966^"; structure "1^,2^"; splice_chain "73098134^,73098231^";
chr7	juncbase	jcn_only_AD	73097713	73100966	.	+	.	gene_id "jcn_only_AD.1286"; transcript_id "jcn_only_AD.1286"; gene_name "CUFF.959"; flanks "73097713-,73100966^"; structure "1^,2^"; splice_chain "73097713^,73098134^";
chr7	juncbase	jcn_only_AD	73098330	73100966	.	+	.	gene_id "jcn_only_AD.1287"; transcript_id "jcn_only_AD.1287"; gene_name "CUFF.959"; flanks "73098330-,73100966^"; structure "1^,2^"; splice_chain "73098134^,73098330^";
chr7	juncbase	jcn_only_AD	73098253	73100966	.	+	.	gene_id "jcn_only_AD.1288"; transcript_id "jcn_only_AD.1288"; gene_name "CUFF.959"; flanks "73098253-,73100966^"; structure "1^,2^"; splice_chain "73098134^,73098253^";
chr7	juncbase	alternative_acceptor	156556489	156629507	.	-	.	gene_id "alternative_acceptor.751"; transcript_id "alternative_acceptor.751"; gene_name "CUFF.1043"; flanks "156556489-,156629507^"; structure "1-,2-"; splice_chain "156627269-,156556489-";
chr7	juncbase	alternative_acceptor	156627289	156629507	.	-	.	gene_id "alternative_acceptor.752"; transcript_id "alternative_acceptor.752"; gene_name "CUFF.1043"; flanks "156627289-,156629507^"; structure "1-,2-"; splice_chain "156627289-,156627269-";
chr7	juncbase	alternative_acceptor	156626486	156629507	.	-	.	gene_id "alternative_acceptor.753"; transcript_id "alternative_acceptor.753"; gene_name "CUFF.1043"; flanks "156626486-,156629507^"; structure "1-,2-"; splice_chain "156627269-,156626486-";
chr7	juncbase	jcn_only_AD	75040009	75040938	.	+	.	gene_id "jcn_only_AD.1289"; transcript_id "jcn_only_AD.1289"; gene_name "CUFF.964"; flanks "75040009-,75040938^"; structure "1^,2^"; splice_chain "75040009^,75040857^";
chr7	juncbase	jcn_only_AD	22259485	22233651	.	-	.	gene_id "jcn_only_AD.1290"; transcript_id "jcn_only_AD.1290"; gene_name "CUFF.939"; flanks "22259485-,22233651^"; structure "1^,2^"; splice_chain "22259485^,22234188^";
chr7	juncbase	jcn_only_AA	22233073	22233533	.	-	.	gene_id "jcn_only_AA.1006"; transcript_id "jcn_only_AA.1006"; gene_name "CUFF.939"; flanks "22233073-,22233533^"; structure "1-,2-"; splice_chain "22233395-,22233073-";
chr7	juncbase	intron_retention	148991107	148991471	.	+	.	gene_id "intron_retention.876"; transcript_id "intron_retention.876"; gene_name ""; flanks "148991107-,148991471^"; structure "0,1^2-"; splice_chain ",148991107^148991471-";
chr7	juncbase	intron_retention	150815431	150815592	.	+	.	gene_id "intron_retention.877"; transcript_id "intron_retention.877"; gene_name "CUFF.1033"; flanks "150815431-,150815592^"; structure "0,1^2-"; splice_chain ",150815431^150815592-";
chr7	juncbase	cassette	99057709	99032891	.	-	.	gene_id "cassette.588"; transcript_id "cassette.588"; gene_name "CUFF.978"; flanks "99057709-,99032891^"; structure "0,1-2^"; splice_chain ",99039110-99039013^";
chr7	juncbase	jcn_only_AA	73112024	73117709	.	+	.	gene_id "jcn_only_AA.1007"; transcript_id "jcn_only_AA.1007"; gene_name "CUFF.972"; flanks "73112024-,73117709^"; structure "1-,2-"; splice_chain "73112162-,73117709-";
chr7	juncbase	alternative_donor	36934614	36901341	.	-	.	gene_id "alternative_donor.1117"; transcript_id "alternative_donor.1117"; gene_name ""; flanks "36934614-,36901341^"; structure "1^,2^"; splice_chain "36934614^,36909998^";
chr7	juncbase	jcn_only_AD	111031894	110603621	.	-	.	gene_id "jcn_only_AD.1291"; transcript_id "jcn_only_AD.1291"; gene_name "CUFF.995"; flanks "111031894-,110603621^"; structure "1^,2^"; splice_chain "111031894^,111030627^";
chr7	juncbase	jcn_only_AD	111127294	110603621	.	-	.	gene_id "jcn_only_AD.1292"; transcript_id "jcn_only_AD.1292"; gene_name "CUFF.995"; flanks "111127294-,110603621^"; structure "1^,2^"; splice_chain "111127294^,111030627^";
chr7	juncbase	alternative_acceptor	34724296	34725363	.	+	.	gene_id "alternative_acceptor.754"; transcript_id "alternative_acceptor.754"; gene_name "CUFF.942"; flanks "34724296-,34725363^"; structure "1-,2-"; splice_chain "34725363-,34818074-";
chr7	juncbase	alternative_acceptor	34724296	34818107	.	+	.	gene_id "alternative_acceptor.755"; transcript_id "alternative_acceptor.755"; gene_name "CUFF.942"; flanks "34724296-,34818107^"; structure "1-,2-"; splice_chain "34818074-,34818107-";
chr7	juncbase	jcn_only_AA	156556489	156629507	.	-	.	gene_id "jcn_only_AA.1008"; transcript_id "jcn_only_AA.1008"; gene_name "CUFF.1043"; flanks "156556489-,156629507^"; structure "1-,2-"; splice_chain "156627269-,156556489-";
chr7	juncbase	jcn_only_AA	156627289	156629507	.	-	.	gene_id "jcn_only_AA.1009"; transcript_id "jcn_only_AA.1009"; gene_name "CUFF.1043"; flanks "156627289-,156629507^"; structure "1-,2-"; splice_chain "156627289-,156627269-";
chr7	juncbase	jcn_only_AA	156626486	156629507	.	-	.	gene_id "jcn_only_AA.1010"; transcript_id "jcn_only_AA.1010"; gene_name "CUFF.1043"; flanks "156626486-,156629507^"; structure "1-,2-"; splice_chain "156627269-,156626486-";
chr7	juncbase	intron_retention	54617863	54618446	.	+	.	gene_id "intron_retention.878"; transcript_id "intron_retention.878"; gene_name "CUFF.952"; flanks "54617863-,54618446^"; structure "0,1^2-"; splice_chain ",54617863^54618446-";
chr7	juncbase	cassette	91609647	91622199	.	+	.	gene_id "cassette.589"; transcript_id "cassette.589"; gene_name "CUFF.972"; flanks "91609647-,91622199^"; structure "0,1-2^"; splice_chain ",91621472-91621525^";
chr7	juncbase	alternative_donor	117450819	117432835	.	-	.	gene_id "alternative_donor.1118"; transcript_id "alternative_donor.1118"; gene_name "CUFF.1001"; flanks "117450819-,117432835^"; structure "1^,2^"; splice_chain "117450819^,117433467^";
chr7	juncbase	jcn_only_AD	38948754	38937729	.	-	.	gene_id "jcn_only_AD.1293"; transcript_id "jcn_only_AD.1293"; gene_name "CUFF.948"; flanks "38948754-,38937729^"; structure "1^,2^"; splice_chain "38969072^,38948754^";
chr7	juncbase	jcn_only_AD	38971878	38937729	.	-	.	gene_id "jcn_only_AD.1294"; transcript_id "jcn_only_AD.1294"; gene_name "CUFF.948"; flanks "38971878-,38937729^"; structure "1^,2^"; splice_chain "38971878^,38969072^";
chr7	juncbase	jcn_only_AA	128865280	129019482	.	+	.	gene_id "jcn_only_AA.1011"; transcript_id "jcn_only_AA.1011"; gene_name ""; flanks "128865280-,129019482^"; structure "1-,2-"; splice_chain "129019479-,129019482-";
chr7	juncbase	jcn_only_AA	107253877	107262075	.	+	.	gene_id "jcn_only_AA.1012"; transcript_id "jcn_only_AA.1012"; gene_name "CUFF.988"; flanks "107253877-,107262075^"; structure "1-,2-"; splice_chain "107258773-,107262075-";
chr7	juncbase	intron_retention	73106976	73107659	.	+	.	gene_id "intron_retention.879"; transcript_id "intron_retention.879"; gene_name ""; flanks "73106976-,73107659^"; structure "0,1^2-"; splice_chain ",73106976^73107659-";
chr7	juncbase	alternative_donor	150815719	150817074	.	+	.	gene_id "alternative_donor.1119"; transcript_id "alternative_donor.1119"; gene_name "CUFF.1033"; flanks "150815719-,150817074^"; structure "1^,2^"; splice_chain "150815719^,150816341^";
chr7	juncbase	alternative_donor	150815718	150817074	.	+	.	gene_id "alternative_donor.1120"; transcript_id "alternative_donor.1120"; gene_name "CUFF.1033"; flanks "150815718-,150817074^"; structure "1^,2^"; splice_chain "150815718^,150816341^";
chr7	juncbase	jcn_only_AA	156469377	156471771	.	-	.	gene_id "jcn_only_AA.1013"; transcript_id "jcn_only_AA.1013"; gene_name "CUFF.1043"; flanks "156469377-,156471771^"; structure "1-,2-"; splice_chain "156469377-,156469318-";
chr7	juncbase	jcn_only_AA	156471044	156471771	.	-	.	gene_id "jcn_only_AA.1014"; transcript_id "jcn_only_AA.1014"; gene_name "CUFF.1043"; flanks "156471044-,156471771^"; structure "1-,2-"; splice_chain "156471044-,156469318-";
chr7	juncbase	alternative_donor	150816341	150817074	.	+	.	gene_id "alternative_donor.1121"; transcript_id "alternative_donor.1121"; gene_name "CUFF.1033"; flanks "150816341-,150817074^"; structure "1^,2^"; splice_chain "150815719^,150816341^";
chr7	juncbase	alternative_donor	150815718	150817074	.	+	.	gene_id "alternative_donor.1122"; transcript_id "alternative_donor.1122"; gene_name "CUFF.1033"; flanks "150815718-,150817074^"; structure "1^,2^"; splice_chain "150815718^,150815719^";
chr7	juncbase	intron_retention	44247797	44248006	.	+	.	gene_id "intron_retention.880"; transcript_id "intron_retention.880"; gene_name "CUFF.950"; flanks "44247797-,44248006^"; structure "0,1^2-"; splice_chain ",44247797^44248006-";
chr7	juncbase	intron_retention	156473137	156472000	.	-	.	gene_id "intron_retention.881"; transcript_id "intron_retention.881"; gene_name "CUFF.1043"; flanks "156473137-,156472000^"; structure "0,1^2-"; splice_chain ",156473137^156472000-";
chr7	juncbase	jcn_only_AD	150815719	150817074	.	+	.	gene_id "jcn_only_AD.1295"; transcript_id "jcn_only_AD.1295"; gene_name "CUFF.1033"; flanks "150815719-,150817074^"; structure "1^,2^"; splice_chain "150815718^,150815719^";
chr7	juncbase	jcn_only_AD	150816341	150817074	.	+	.	gene_id "jcn_only_AD.1296"; transcript_id "jcn_only_AD.1296"; gene_name "CUFF.1033"; flanks "150816341-,150817074^"; structure "1^,2^"; splice_chain "150815718^,150816341^";
chr7	juncbase	jcn_only_AA	73107999	73111935	.	+	.	gene_id "jcn_only_AA.1015"; transcript_id "jcn_only_AA.1015"; gene_name ""; flanks "73107999-,73111935^"; structure "1-,2-"; splice_chain "73108322-,73111935-";
chr7	juncbase	jcn_only_AD	73107999	73111935	.	+	.	gene_id "jcn_only_AD.1297"; transcript_id "jcn_only_AD.1297"; gene_name ""; flanks "73107999-,73111935^"; structure "1^,2^"; splice_chain "73107999^,73111846^";
chr7	juncbase	jcn_only_AD	73106976	73111935	.	+	.	gene_id "jcn_only_AD.1298"; transcript_id "jcn_only_AD.1298"; gene_name ""; flanks "73106976-,73111935^"; structure "1^,2^"; splice_chain "73106976^,73111846^";
chr7	juncbase	jcn_only_AD	73108380	73111935	.	+	.	gene_id "jcn_only_AD.1299"; transcript_id "jcn_only_AD.1299"; gene_name ""; flanks "73108380-,73111935^"; structure "1^,2^"; splice_chain "73108380^,73111846^";
chr7	juncbase	jcn_only_AD	86554844	86548626	.	-	.	gene_id "jcn_only_AD.1300"; transcript_id "jcn_only_AD.1300"; gene_name "CUFF.953,CUFF.970"; flanks "86554844-,86548626^"; structure "1^,2^"; splice_chain "86554844^,86549024^";
chr7	juncbase	jcn_only_AD	86550079	86548626	.	-	.	gene_id "jcn_only_AD.1301"; transcript_id "jcn_only_AD.1301"; gene_name "CUFF.953,CUFF.970"; flanks "86550079-,86548626^"; structure "1^,2^"; splice_chain "86550079^,86549024^";
chr7	juncbase	jcn_only_AD	117511644	117501370	.	-	.	gene_id "jcn_only_AD.1302"; transcript_id "jcn_only_AD.1302"; gene_name ""; flanks "117511644-,117501370^"; structure "1^,2^"; splice_chain "117514055^,117511644^";
chr7	juncbase	jcn_only_AD	117512158	117501370	.	-	.	gene_id "jcn_only_AD.1303"; transcript_id "jcn_only_AD.1303"; gene_name ""; flanks "117512158-,117501370^"; structure "1^,2^"; splice_chain "117514055^,117512158^";
chr7	juncbase	jcn_only_AD	117450819	117432835	.	-	.	gene_id "jcn_only_AD.1304"; transcript_id "jcn_only_AD.1304"; gene_name "CUFF.1001"; flanks "117450819-,117432835^"; structure "1^,2^"; splice_chain "117450819^,117433467^";
chr7	juncbase	jcn_only_AD	136554165	136676934	.	+	.	gene_id "jcn_only_AD.1305"; transcript_id "jcn_only_AD.1305"; gene_name ""; flanks "136554165-,136676934^"; structure "1^,2^"; splice_chain "136554165^,136635827^";
chr7	juncbase	jcn_only_AD	102665510	102608564	.	-	.	gene_id "jcn_only_AD.1306"; transcript_id "jcn_only_AD.1306"; gene_name "CUFF.984"; flanks "102665510-,102608564^"; structure "1^,2^"; splice_chain "102665510^,102613597^";
chr7	juncbase	jcn_only_AD	150816341	150817074	.	+	.	gene_id "jcn_only_AD.1307"; transcript_id "jcn_only_AD.1307"; gene_name "CUFF.1033"; flanks "150816341-,150817074^"; structure "1^,2^"; splice_chain "150815719^,150816341^";
chr7	juncbase	jcn_only_AD	150815718	150817074	.	+	.	gene_id "jcn_only_AD.1308"; transcript_id "jcn_only_AD.1308"; gene_name "CUFF.1033"; flanks "150815718-,150817074^"; structure "1^,2^"; splice_chain "150815718^,150815719^";
chr7	juncbase	jcn_only_AD	156626433	156619438	.	-	.	gene_id "jcn_only_AD.1309"; transcript_id "jcn_only_AD.1309"; gene_name ""; flanks "156626433-,156619438^"; structure "1^,2^"; splice_chain "156685622^,156626433^";
chr7	juncbase	jcn_only_AD	156626447	156619438	.	-	.	gene_id "jcn_only_AD.1310"; transcript_id "jcn_only_AD.1310"; gene_name ""; flanks "156626447-,156619438^"; structure "1^,2^"; splice_chain "156685622^,156626447^";
chr7	juncbase	cassette	44250723	44251846	.	+	.	gene_id "cassette.590"; transcript_id "cassette.590"; gene_name "CUFF.950"; flanks "44250723-,44251846^"; structure "0,1-2^"; splice_chain ",44251153-44251203^";
chr7	juncbase	intron_retention	75045048	75045259	.	+	.	gene_id "intron_retention.882"; transcript_id "intron_retention.882"; gene_name ""; flanks "75045048-,75045259^"; structure "0,1^2-"; splice_chain ",75045048^75045259-";
chr7	juncbase	jcn_only_AA	73275596	73279323	.	+	.	gene_id "jcn_only_AA.1016"; transcript_id "jcn_only_AA.1016"; gene_name "CUFF.960"; flanks "73275596-,73279323^"; structure "1-,2-"; splice_chain "73275799-,73279323-";
chr7	juncbase	alternative_acceptor	148987129	148989302	.	+	.	gene_id "alternative_acceptor.756"; transcript_id "alternative_acceptor.756"; gene_name "CUFF.1030"; flanks "148987129-,148989302^"; structure "1-,2-"; splice_chain "148988647-,148989302-";
chr7	juncbase	jcn_only_AA	136554165	136699567	.	+	.	gene_id "jcn_only_AA.1017"; transcript_id "jcn_only_AA.1017"; gene_name "CUFF.1027"; flanks "136554165-,136699567^"; structure "1-,2-"; splice_chain "136554552-,136699567-";
chr7	juncbase	jcn_only_AA	136554165	136635750	.	+	.	gene_id "jcn_only_AA.1018"; transcript_id "jcn_only_AA.1018"; gene_name "CUFF.1027"; flanks "136554165-,136635750^"; structure "1-,2-"; splice_chain "136554552-,136635750-";
chr7	juncbase	jcn_only_AA	136554165	136676934	.	+	.	gene_id "jcn_only_AA.1019"; transcript_id "jcn_only_AA.1019"; gene_name "CUFF.1027"; flanks "136554165-,136676934^"; structure "1-,2-"; splice_chain "136554552-,136676934-";
chr7	juncbase	alternative_acceptor	136554165	136699567	.	+	.	gene_id "alternative_acceptor.757"; transcript_id "alternative_acceptor.757"; gene_name "CUFF.1027"; flanks "136554165-,136699567^"; structure "1-,2-"; splice_chain "136676934-,136699567-";
chr7	juncbase	alternative_acceptor	136554165	136635750	.	+	.	gene_id "alternative_acceptor.758"; transcript_id "alternative_acceptor.758"; gene_name "CUFF.1027"; flanks "136554165-,136635750^"; structure "1-,2-"; splice_chain "136635750-,136676934-";
chr7	juncbase	alternative_acceptor	136554165	136554552	.	+	.	gene_id "alternative_acceptor.759"; transcript_id "alternative_acceptor.759"; gene_name "CUFF.1027"; flanks "136554165-,136554552^"; structure "1-,2-"; splice_chain "136554552-,136676934-";
chr7	juncbase	jcn_only_AD	55759007	55755617	.	-	.	gene_id "jcn_only_AD.1311"; transcript_id "jcn_only_AD.1311"; gene_name "CUFF.935"; flanks "55759007-,55755617^"; structure "1^,2^"; splice_chain "55759007^,55756606^";
chr7	juncbase	alternative_donor	156685622	156619438	.	-	.	gene_id "alternative_donor.1123"; transcript_id "alternative_donor.1123"; gene_name ""; flanks "156685622-,156619438^"; structure "1^,2^"; splice_chain "156685622^,156626433^";
chr7	juncbase	alternative_donor	156626447	156619438	.	-	.	gene_id "alternative_donor.1124"; transcript_id "alternative_donor.1124"; gene_name ""; flanks "156626447-,156619438^"; structure "1^,2^"; splice_chain "156626447^,156626433^";
chr7	juncbase	alternative_donor	73097713	73100966	.	+	.	gene_id "alternative_donor.1125"; transcript_id "alternative_donor.1125"; gene_name "CUFF.959"; flanks "73097713-,73100966^"; structure "1^,2^"; splice_chain "73097713^,73098231^";
chr7	juncbase	alternative_donor	73098330	73100966	.	+	.	gene_id "alternative_donor.1126"; transcript_id "alternative_donor.1126"; gene_name "CUFF.959"; flanks "73098330-,73100966^"; structure "1^,2^"; splice_chain "73098231^,73098330^";
chr7	juncbase	alternative_donor	73098253	73100966	.	+	.	gene_id "alternative_donor.1127"; transcript_id "alternative_donor.1127"; gene_name "CUFF.959"; flanks "73098253-,73100966^"; structure "1^,2^"; splice_chain "73098231^,73098253^";
chr7	juncbase	alternative_donor	73098134	73100966	.	+	.	gene_id "alternative_donor.1128"; transcript_id "alternative_donor.1128"; gene_name "CUFF.959"; flanks "73098134-,73100966^"; structure "1^,2^"; splice_chain "73098134^,73098231^";
chr7	juncbase	jcn_only_AD	38948754	38937729	.	-	.	gene_id "jcn_only_AD.1312"; transcript_id "jcn_only_AD.1312"; gene_name "CUFF.948"; flanks "38948754-,38937729^"; structure "1^,2^"; splice_chain "38971878^,38948754^";
chr7	juncbase	jcn_only_AD	38969072	38937729	.	-	.	gene_id "jcn_only_AD.1313"; transcript_id "jcn_only_AD.1313"; gene_name "CUFF.948"; flanks "38969072-,38937729^"; structure "1^,2^"; splice_chain "38971878^,38969072^";
chr7	juncbase	alternative_acceptor	34724296	34818074	.	+	.	gene_id "alternative_acceptor.760"; transcript_id "alternative_acceptor.760"; gene_name "CUFF.942"; flanks "34724296-,34818074^"; structure "1-,2-"; splice_chain "34725363-,34818074-";
chr7	juncbase	alternative_acceptor	34724296	34818107	.	+	.	gene_id "alternative_acceptor.761"; transcript_id "alternative_acceptor.761"; gene_name "CUFF.942"; flanks "34724296-,34818107^"; structure "1-,2-"; splice_chain "34725363-,34818107-";
chr7	juncbase	alternative_donor	107207631	107211590	.	+	.	gene_id "alternative_donor.1129"; transcript_id "alternative_donor.1129"; gene_name "CUFF.987"; flanks "107207631-,107211590^"; structure "1^,2^"; splice_chain "107207631^,107208310^";
chr7	juncbase	jcn_only_AD	156685622	156619438	.	-	.	gene_id "jcn_only_AD.1314"; transcript_id "jcn_only_AD.1314"; gene_name ""; flanks "156685622-,156619438^"; structure "1^,2^"; splice_chain "156685622^,156626433^";
chr7	juncbase	jcn_only_AD	156626447	156619438	.	-	.	gene_id "jcn_only_AD.1315"; transcript_id "jcn_only_AD.1315"; gene_name ""; flanks "156626447-,156619438^"; structure "1^,2^"; splice_chain "156626447^,156626433^";
chr7	juncbase	jcn_only_AD	73107999	73111935	.	+	.	gene_id "jcn_only_AD.1316"; transcript_id "jcn_only_AD.1316"; gene_name ""; flanks "73107999-,73111935^"; structure "1^,2^"; splice_chain "73107999^,73108380^";
chr7	juncbase	jcn_only_AD	73106976	73111935	.	+	.	gene_id "jcn_only_AD.1317"; transcript_id "jcn_only_AD.1317"; gene_name ""; flanks "73106976-,73111935^"; structure "1^,2^"; splice_chain "73106976^,73108380^";
chr7	juncbase	jcn_only_AD	73111846	73111935	.	+	.	gene_id "jcn_only_AD.1318"; transcript_id "jcn_only_AD.1318"; gene_name ""; flanks "73111846-,73111935^"; structure "1^,2^"; splice_chain "73108380^,73111846^";
chr7	juncbase	jcn_only_AA	111161505	111201907	.	-	.	gene_id "jcn_only_AA.1020"; transcript_id "jcn_only_AA.1020"; gene_name "CUFF.995"; flanks "111161505-,111201907^"; structure "1-,2-"; splice_chain "111172641-,111161505-";
chr7	juncbase	intron_retention	150815431	150815561	.	+	.	gene_id "intron_retention.883"; transcript_id "intron_retention.883"; gene_name "CUFF.1033"; flanks "150815431-,150815561^"; structure "0,1^2-"; splice_chain ",150815431^150815561-";
chr7	juncbase	jcn_only_AD	150784159	150813880	.	+	.	gene_id "jcn_only_AD.1319"; transcript_id "jcn_only_AD.1319"; gene_name "CUFF.1033"; flanks "150784159-,150813880^"; structure "1^,2^"; splice_chain "150784159^,150812728^";
chr7	juncbase	jcn_only_AD	150784291	150813880	.	+	.	gene_id "jcn_only_AD.1320"; transcript_id "jcn_only_AD.1320"; gene_name "CUFF.1033"; flanks "150784291-,150813880^"; structure "1^,2^"; splice_chain "150784291^,150812728^";
chr7	juncbase	jcn_only_AD	150813737	150813880	.	+	.	gene_id "jcn_only_AD.1321"; transcript_id "jcn_only_AD.1321"; gene_name "CUFF.1033"; flanks "150813737-,150813880^"; structure "1^,2^"; splice_chain "150812728^,150813737^";
chr7	juncbase	jcn_only_AD	150783147	150813880	.	+	.	gene_id "jcn_only_AD.1322"; transcript_id "jcn_only_AD.1322"; gene_name "CUFF.1033"; flanks "150783147-,150813880^"; structure "1^,2^"; splice_chain "150783147^,150812728^";
chr7	juncbase	jcn_only_AD	150787634	150813880	.	+	.	gene_id "jcn_only_AD.1323"; transcript_id "jcn_only_AD.1323"; gene_name "CUFF.1033"; flanks "150787634-,150813880^"; structure "1^,2^"; splice_chain "150787634^,150812728^";
chr7	juncbase	jcn_only_AD	150809331	150813880	.	+	.	gene_id "jcn_only_AD.1324"; transcript_id "jcn_only_AD.1324"; gene_name "CUFF.1033"; flanks "150809331-,150813880^"; structure "1^,2^"; splice_chain "150809331^,150812728^";
chr7	juncbase	jcn_only_AD	150783096	150813880	.	+	.	gene_id "jcn_only_AD.1325"; transcript_id "jcn_only_AD.1325"; gene_name "CUFF.1033"; flanks "150783096-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150812728^";
chr7	juncbase	alternative_donor	65579901	65592691	.	+	.	gene_id "alternative_donor.1130"; transcript_id "alternative_donor.1130"; gene_name "CUFF.956"; flanks "65579901-,65592691^"; structure "1^,2^"; splice_chain "65579901^,65591630^";
chr7	juncbase	alternative_donor	65579957	65592691	.	+	.	gene_id "alternative_donor.1131"; transcript_id "alternative_donor.1131"; gene_name "CUFF.956"; flanks "65579957-,65592691^"; structure "1^,2^"; splice_chain "65579957^,65591630^";
chr7	juncbase	jcn_only_AD	117511644	117501370	.	-	.	gene_id "jcn_only_AD.1326"; transcript_id "jcn_only_AD.1326"; gene_name "CUFF.1001"; flanks "117511644-,117501370^"; structure "1^,2^"; splice_chain "117512158^,117511644^";
chr7	juncbase	jcn_only_AD	117514055	117501370	.	-	.	gene_id "jcn_only_AD.1327"; transcript_id "jcn_only_AD.1327"; gene_name "CUFF.1001"; flanks "117514055-,117501370^"; structure "1^,2^"; splice_chain "117514055^,117512158^";
chr7	juncbase	cassette	117368143	117364786	.	-	.	gene_id "cassette.591"; transcript_id "cassette.591"; gene_name "CUFF.1001"; flanks "117368143-,117364786^"; structure "0,1-2^"; splice_chain ",117365311-117365106^";
chr7	juncbase	cassette	102257072	102249901	.	-	.	gene_id "cassette.592"; transcript_id "cassette.592"; gene_name "CUFF.983"; flanks "102257072-,102249901^"; structure "0,1-2^"; splice_chain ",102251589-102251533^";
chr7	juncbase	jcn_only_AD	102462487	102453978	.	-	.	gene_id "jcn_only_AD.1328"; transcript_id "jcn_only_AD.1328"; gene_name "CUFF.984"; flanks "102462487-,102453978^"; structure "1^,2^"; splice_chain "102462487^,102454781^";
chr7	juncbase	alternative_acceptor	111161505	111201907	.	-	.	gene_id "alternative_acceptor.762"; transcript_id "alternative_acceptor.762"; gene_name "CUFF.995"; flanks "111161505-,111201907^"; structure "1-,2-"; splice_chain "111172641-,111161505-";
chr7	juncbase	alternative_donor	38768142	38766588	.	-	.	gene_id "alternative_donor.1132"; transcript_id "alternative_donor.1132"; gene_name "CUFF.948"; flanks "38768142-,38766588^"; structure "1^,2^"; splice_chain "38768142^,38767941^";
chr7	juncbase	jcn_only_AD	22232985	22206766	.	-	.	gene_id "jcn_only_AD.1329"; transcript_id "jcn_only_AD.1329"; gene_name "CUFF.939"; flanks "22232985-,22206766^"; structure "1^,2^"; splice_chain "22232985^,22231147^";
chr7	juncbase	alternative_donor	102665510	102608564	.	-	.	gene_id "alternative_donor.1133"; transcript_id "alternative_donor.1133"; gene_name "CUFF.984"; flanks "102665510-,102608564^"; structure "1^,2^"; splice_chain "102665510^,102613597^";
chr7	juncbase	jcn_only_AA	1778838	1781845	.	-	.	gene_id "jcn_only_AA.1021"; transcript_id "jcn_only_AA.1021"; gene_name "CUFF.923"; flanks "1778838-,1781845^"; structure "1-,2-"; splice_chain "1779171-,1778838-";
chr7	juncbase	jcn_only_AD	37025528	36934622	.	-	.	gene_id "jcn_only_AD.1330"; transcript_id "jcn_only_AD.1330"; gene_name ""; flanks "37025528-,36934622^"; structure "1^,2^"; splice_chain "37052904^,37025528^";
chr7	juncbase	jcn_only_AD	37024520	36934622	.	-	.	gene_id "jcn_only_AD.1331"; transcript_id "jcn_only_AD.1331"; gene_name ""; flanks "37024520-,36934622^"; structure "1^,2^"; splice_chain "37052904^,37024520^";
chr7	juncbase	intron_retention	107221090	107221204	.	+	.	gene_id "intron_retention.884"; transcript_id "intron_retention.884"; gene_name ""; flanks "107221090-,107221204^"; structure "0,1^2-"; splice_chain ",107221090^107221204-";
chr7	juncbase	jcn_only_AD	117512158	117501370	.	-	.	gene_id "jcn_only_AD.1332"; transcript_id "jcn_only_AD.1332"; gene_name "CUFF.1001"; flanks "117512158-,117501370^"; structure "1^,2^"; splice_chain "117512158^,117511644^";
chr7	juncbase	jcn_only_AD	117514055	117501370	.	-	.	gene_id "jcn_only_AD.1333"; transcript_id "jcn_only_AD.1333"; gene_name "CUFF.1001"; flanks "117514055-,117501370^"; structure "1^,2^"; splice_chain "117514055^,117511644^";
chr7	juncbase	cassette	150817232	150819812	.	+	.	gene_id "cassette.593"; transcript_id "cassette.593"; gene_name "CUFF.1033"; flanks "150817232-,150819812^"; structure "0,1-2^"; splice_chain ",150817607-150817832^";
chr7	juncbase	cassette	150817232	150820881	.	+	.	gene_id "cassette.594"; transcript_id "cassette.594"; gene_name "CUFF.1033"; flanks "150817232-,150820881^"; structure "0,1-2^"; splice_chain ",150817607-150817832^";
chr7	juncbase	jcn_only_AD	150784159	150813880	.	+	.	gene_id "jcn_only_AD.1334"; transcript_id "jcn_only_AD.1334"; gene_name "CUFF.1033"; flanks "150784159-,150813880^"; structure "1^,2^"; splice_chain "150784159^,150784291^";
chr7	juncbase	jcn_only_AD	150813737	150813880	.	+	.	gene_id "jcn_only_AD.1335"; transcript_id "jcn_only_AD.1335"; gene_name "CUFF.1033"; flanks "150813737-,150813880^"; structure "1^,2^"; splice_chain "150784291^,150813737^";
chr7	juncbase	jcn_only_AD	150783147	150813880	.	+	.	gene_id "jcn_only_AD.1336"; transcript_id "jcn_only_AD.1336"; gene_name "CUFF.1033"; flanks "150783147-,150813880^"; structure "1^,2^"; splice_chain "150783147^,150784291^";
chr7	juncbase	jcn_only_AD	150787634	150813880	.	+	.	gene_id "jcn_only_AD.1337"; transcript_id "jcn_only_AD.1337"; gene_name "CUFF.1033"; flanks "150787634-,150813880^"; structure "1^,2^"; splice_chain "150784291^,150787634^";
chr7	juncbase	jcn_only_AD	150809331	150813880	.	+	.	gene_id "jcn_only_AD.1338"; transcript_id "jcn_only_AD.1338"; gene_name "CUFF.1033"; flanks "150809331-,150813880^"; structure "1^,2^"; splice_chain "150784291^,150809331^";
chr7	juncbase	jcn_only_AD	150783096	150813880	.	+	.	gene_id "jcn_only_AD.1339"; transcript_id "jcn_only_AD.1339"; gene_name "CUFF.1033"; flanks "150783096-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150784291^";
chr7	juncbase	jcn_only_AD	150812728	150813880	.	+	.	gene_id "jcn_only_AD.1340"; transcript_id "jcn_only_AD.1340"; gene_name "CUFF.1033"; flanks "150812728-,150813880^"; structure "1^,2^"; splice_chain "150784291^,150812728^";
chr7	juncbase	alternative_donor	111201907	111161505	.	-	.	gene_id "alternative_donor.1134"; transcript_id "alternative_donor.1134"; gene_name "CUFF.995"; flanks "111201907-,111161505^"; structure "1^,2^"; splice_chain "111201907^,111172574^";
chr7	juncbase	alternative_donor	38902145	38869928	.	-	.	gene_id "alternative_donor.1135"; transcript_id "alternative_donor.1135"; gene_name "CUFF.948"; flanks "38902145-,38869928^"; structure "1^,2^"; splice_chain "38902145^,38870816^";
chr7	juncbase	jcn_only_AD	73098231	73100966	.	+	.	gene_id "jcn_only_AD.1341"; transcript_id "jcn_only_AD.1341"; gene_name "CUFF.959"; flanks "73098231-,73100966^"; structure "1^,2^"; splice_chain "73098231^,73098330^";
chr7	juncbase	jcn_only_AD	73097713	73100966	.	+	.	gene_id "jcn_only_AD.1342"; transcript_id "jcn_only_AD.1342"; gene_name "CUFF.959"; flanks "73097713-,73100966^"; structure "1^,2^"; splice_chain "73097713^,73098330^";
chr7	juncbase	jcn_only_AD	73098253	73100966	.	+	.	gene_id "jcn_only_AD.1343"; transcript_id "jcn_only_AD.1343"; gene_name "CUFF.959"; flanks "73098253-,73100966^"; structure "1^,2^"; splice_chain "73098253^,73098330^";
chr7	juncbase	jcn_only_AD	73098134	73100966	.	+	.	gene_id "jcn_only_AD.1344"; transcript_id "jcn_only_AD.1344"; gene_name "CUFF.959"; flanks "73098134-,73100966^"; structure "1^,2^"; splice_chain "73098134^,73098330^";
chr7	juncbase	jcn_only_AD	156526871	156516872	.	-	.	gene_id "jcn_only_AD.1345"; transcript_id "jcn_only_AD.1345"; gene_name ""; flanks "156526871-,156516872^"; structure "1^,2^"; splice_chain "156526871^,156518129^";
chr7	juncbase	alternative_donor	38971878	38937729	.	-	.	gene_id "alternative_donor.1136"; transcript_id "alternative_donor.1136"; gene_name ""; flanks "38971878-,38937729^"; structure "1^,2^"; splice_chain "38971878^,38948754^";
chr7	juncbase	alternative_donor	38969072	38937729	.	-	.	gene_id "alternative_donor.1137"; transcript_id "alternative_donor.1137"; gene_name ""; flanks "38969072-,38937729^"; structure "1^,2^"; splice_chain "38969072^,38948754^";
chr7	juncbase	jcn_only_AD	150784159	150813880	.	+	.	gene_id "jcn_only_AD.1346"; transcript_id "jcn_only_AD.1346"; gene_name "CUFF.1033"; flanks "150784159-,150813880^"; structure "1^,2^"; splice_chain "150784159^,150813737^";
chr7	juncbase	jcn_only_AD	150784291	150813880	.	+	.	gene_id "jcn_only_AD.1347"; transcript_id "jcn_only_AD.1347"; gene_name "CUFF.1033"; flanks "150784291-,150813880^"; structure "1^,2^"; splice_chain "150784291^,150813737^";
chr7	juncbase	jcn_only_AD	150783147	150813880	.	+	.	gene_id "jcn_only_AD.1348"; transcript_id "jcn_only_AD.1348"; gene_name "CUFF.1033"; flanks "150783147-,150813880^"; structure "1^,2^"; splice_chain "150783147^,150813737^";
chr7	juncbase	jcn_only_AD	150787634	150813880	.	+	.	gene_id "jcn_only_AD.1349"; transcript_id "jcn_only_AD.1349"; gene_name "CUFF.1033"; flanks "150787634-,150813880^"; structure "1^,2^"; splice_chain "150787634^,150813737^";
chr7	juncbase	jcn_only_AD	150809331	150813880	.	+	.	gene_id "jcn_only_AD.1350"; transcript_id "jcn_only_AD.1350"; gene_name "CUFF.1033"; flanks "150809331-,150813880^"; structure "1^,2^"; splice_chain "150809331^,150813737^";
chr7	juncbase	jcn_only_AD	150783096	150813880	.	+	.	gene_id "jcn_only_AD.1351"; transcript_id "jcn_only_AD.1351"; gene_name "CUFF.1033"; flanks "150783096-,150813880^"; structure "1^,2^"; splice_chain "150783096^,150813737^";
chr7	juncbase	jcn_only_AD	150812728	150813880	.	+	.	gene_id "jcn_only_AD.1352"; transcript_id "jcn_only_AD.1352"; gene_name "CUFF.1033"; flanks "150812728-,150813880^"; structure "1^,2^"; splice_chain "150812728^,150813737^";
chr7	juncbase	jcn_only_AD	22396449	22357656	.	-	.	gene_id "jcn_only_AD.1353"; transcript_id "jcn_only_AD.1353"; gene_name "CUFF.939,CUFF.944"; flanks "22396449-,22357656^"; structure "1^,2^"; splice_chain "22396449^,22395597^";
chr7	juncbase	jcn_only_AD	65579957	65592691	.	+	.	gene_id "jcn_only_AD.1354"; transcript_id "jcn_only_AD.1354"; gene_name "CUFF.956"; flanks "65579957-,65592691^"; structure "1^,2^"; splice_chain "65579901^,65579957^";
chr7	juncbase	jcn_only_AD	65591630	65592691	.	+	.	gene_id "jcn_only_AD.1355"; transcript_id "jcn_only_AD.1355"; gene_name "CUFF.956"; flanks "65591630-,65592691^"; structure "1^,2^"; splice_chain "65579901^,65591630^";
chr7	juncbase	alternative_donor	117511644	117501370	.	-	.	gene_id "alternative_donor.1138"; transcript_id "alternative_donor.1138"; gene_name "CUFF.1001"; flanks "117511644-,117501370^"; structure "1^,2^"; splice_chain "117512158^,117511644^";
chr7	juncbase	alternative_donor	117514055	117501370	.	-	.	gene_id "alternative_donor.1139"; transcript_id "alternative_donor.1139"; gene_name "CUFF.1001"; flanks "117514055-,117501370^"; structure "1^,2^"; splice_chain "117514055^,117512158^";
chr7	juncbase	cassette	102603980	102566821	.	-	.	gene_id "cassette.595"; transcript_id "cassette.595"; gene_name "CUFF.984"; flanks "102603980-,102566821^"; structure "0,1-2^"; splice_chain ",102572380-102572328^";
chr7	juncbase	cassette	37488278	37382367	.	-	.	gene_id "cassette.596"; transcript_id "cassette.596"; gene_name "CUFF.944"; flanks "37488278-,37382367^"; structure "0,1-2^"; splice_chain ",37433520-37433425^";
chr7	juncbase	cassette	37488463	37382367	.	-	.	gene_id "cassette.597"; transcript_id "cassette.597"; gene_name "CUFF.944"; flanks "37488463-,37382367^"; structure "0,1-2^"; splice_chain ",37433520-37433425^";
chr7	juncbase	jcn_only_AD	37052904	36934622	.	-	.	gene_id "jcn_only_AD.1356"; transcript_id "jcn_only_AD.1356"; gene_name "CUFF.944"; flanks "37052904-,36934622^"; structure "1^,2^"; splice_chain "37052904^,37025528^";
chr7	juncbase	jcn_only_AD	37024520	36934622	.	-	.	gene_id "jcn_only_AD.1357"; transcript_id "jcn_only_AD.1357"; gene_name "CUFF.944"; flanks "37024520-,36934622^"; structure "1^,2^"; splice_chain "37025528^,37024520^";
chr7	juncbase	intron_retention	156471771	156471044	.	-	.	gene_id "intron_retention.885"; transcript_id "intron_retention.885"; gene_name ""; flanks "156471771-,156471044^"; structure "0,1^2-"; splice_chain ",156471771^156471044-";
chr7	juncbase	alternative_acceptor	86569431	86571334	.	-	.	gene_id "alternative_acceptor.763"; transcript_id "alternative_acceptor.763"; gene_name "CUFF.970"; flanks "86569431-,86571334^"; structure "1-,2-"; splice_chain "86570701-,86569431-";
chr7	juncbase	jcn_only_AA	22162139	22165222	.	-	.	gene_id "jcn_only_AA.1022"; transcript_id "jcn_only_AA.1022"; gene_name "CUFF.939"; flanks "22162139-,22165222^"; structure "1-,2-"; splice_chain "22165039-,22162139-";
chr7	juncbase	jcn_only_AD	107254177	107258773	.	+	.	gene_id "jcn_only_AD.1358"; transcript_id "jcn_only_AD.1358"; gene_name "CUFF.988"; flanks "107254177-,107258773^"; structure "1^,2^"; splice_chain "107254177^,107256834^";
chr7	juncbase	jcn_only_AD	107253877	107258773	.	+	.	gene_id "jcn_only_AD.1359"; transcript_id "jcn_only_AD.1359"; gene_name "CUFF.988"; flanks "107253877-,107258773^"; structure "1^,2^"; splice_chain "107253877^,107256834^";
chr6	juncbase	alternative_acceptor	128330410	128385903	.	-	.	gene_id "alternative_acceptor.764"; transcript_id "alternative_acceptor.764"; gene_name "CUFF.890"; flanks "128330410-,128385903^"; structure "1-,2-"; splice_chain "128383569-,128330410-";
chr6	juncbase	alternative_acceptor	128330413	128385903	.	-	.	gene_id "alternative_acceptor.765"; transcript_id "alternative_acceptor.765"; gene_name "CUFF.890"; flanks "128330413-,128385903^"; structure "1-,2-"; splice_chain "128383569-,128330413-";
chr6	juncbase	alternative_acceptor	128384670	128385903	.	-	.	gene_id "alternative_acceptor.766"; transcript_id "alternative_acceptor.766"; gene_name "CUFF.890"; flanks "128384670-,128385903^"; structure "1-,2-"; splice_chain "128384670-,128383569-";
chr6	juncbase	alternative_donor	31935859	31936105	.	+	.	gene_id "alternative_donor.1140"; transcript_id "alternative_donor.1140"; gene_name "CUFF.814"; flanks "31935859-,31936105^"; structure "1^,2^"; splice_chain "31935859^,31935896^";
chr6	juncbase	cassette	126320759	126329538	.	+	.	gene_id "cassette.598"; transcript_id "cassette.598"; gene_name "CUFF.886"; flanks "126320759-,126329538^"; structure "0,1-2^"; splice_chain ",126327988-126328100^";
chr6	juncbase	jcn_only_AA	3155157	3155859	.	-	.	gene_id "jcn_only_AA.1023"; transcript_id "jcn_only_AA.1023"; gene_name "CUFF.790"; flanks "3155157-,3155859^"; structure "1-,2-"; splice_chain "3155289-,3155157-";
chr6	juncbase	cassette	32823982	32825782	.	+	.	gene_id "cassette.599"; transcript_id "cassette.599"; gene_name "CUFF.822"; flanks "32823982-,32825782^"; structure "0,1-2^"; splice_chain ",32825040-32825171^";
chr6	juncbase	alternative_acceptor	5113651	5216851	.	-	.	gene_id "alternative_acceptor.767"; transcript_id "alternative_acceptor.767"; gene_name "CUFF.796"; flanks "5113651-,5216851^"; structure "1-,2-"; splice_chain "5144496-,5113651-";
chr6	juncbase	alternative_acceptor	5138973	5216851	.	-	.	gene_id "alternative_acceptor.768"; transcript_id "alternative_acceptor.768"; gene_name "CUFF.796"; flanks "5138973-,5216851^"; structure "1-,2-"; splice_chain "5144496-,5138973-";
chr6	juncbase	alternative_acceptor	5187214	5216851	.	-	.	gene_id "alternative_acceptor.769"; transcript_id "alternative_acceptor.769"; gene_name "CUFF.796"; flanks "5187214-,5216851^"; structure "1-,2-"; splice_chain "5187214-,5144496-";
chr6	juncbase	alternative_donor	88066221	88074679	.	+	.	gene_id "alternative_donor.1141"; transcript_id "alternative_donor.1141"; gene_name "CUFF.860"; flanks "88066221-,88074679^"; structure "1^,2^"; splice_chain "88066221^,88068919^";
chr6	juncbase	alternative_donor	126342411	126359851	.	+	.	gene_id "alternative_donor.1142"; transcript_id "alternative_donor.1142"; gene_name "CUFF.886"; flanks "126342411-,126359851^"; structure "1^,2^"; splice_chain "126342411^,126342426^";
chr6	juncbase	cassette	116979966	116973355	.	-	.	gene_id "cassette.600"; transcript_id "cassette.600"; gene_name "CUFF.882"; flanks "116979966-,116973355^"; structure "0,1-2^"; splice_chain ",116978015-116977847^";
chr6	juncbase	intron_retention	31936238	31936678	.	+	.	gene_id "intron_retention.886"; transcript_id "intron_retention.886"; gene_name "CUFF.814"; flanks "31936238-,31936678^"; structure "0,1^2-"; splice_chain ",31936238^31936678-";
chr6	juncbase	jcn_only_AD	126307919	126314903	.	+	.	gene_id "jcn_only_AD.1360"; transcript_id "jcn_only_AD.1360"; gene_name "CUFF.886"; flanks "126307919-,126314903^"; structure "1^,2^"; splice_chain "126307768^,126307919^";
chr6	juncbase	jcn_only_AD	126307836	126314903	.	+	.	gene_id "jcn_only_AD.1361"; transcript_id "jcn_only_AD.1361"; gene_name "CUFF.886"; flanks "126307836-,126314903^"; structure "1^,2^"; splice_chain "126307768^,126307836^";
chr6	juncbase	alternative_donor	112604729	112627531	.	+	.	gene_id "alternative_donor.1143"; transcript_id "alternative_donor.1143"; gene_name "CUFF.875"; flanks "112604729-,112627531^"; structure "1^,2^"; splice_chain "112558117^,112604729^";
chr6	juncbase	alternative_donor	112604394	112627531	.	+	.	gene_id "alternative_donor.1144"; transcript_id "alternative_donor.1144"; gene_name "CUFF.875"; flanks "112604394-,112627531^"; structure "1^,2^"; splice_chain "112558117^,112604394^";
chr6	juncbase	alternative_donor	112604369	112627531	.	+	.	gene_id "alternative_donor.1145"; transcript_id "alternative_donor.1145"; gene_name "CUFF.875"; flanks "112604369-,112627531^"; structure "1^,2^"; splice_chain "112558117^,112604369^";
chr6	juncbase	jcn_only_AA	126307768	126314939	.	+	.	gene_id "jcn_only_AA.1024"; transcript_id "jcn_only_AA.1024"; gene_name ""; flanks "126307768-,126314939^"; structure "1-,2-"; splice_chain "126314903-,126314939-";
chr6	juncbase	alternative_acceptor	43483928	43484465	.	-	.	gene_id "alternative_acceptor.770"; transcript_id "alternative_acceptor.770"; gene_name "CUFF.845"; flanks "43483928-,43484465^"; structure "1-,2-"; splice_chain "43483928-,43483784-";
chr6	juncbase	alternative_acceptor	43483833	43484465	.	-	.	gene_id "alternative_acceptor.771"; transcript_id "alternative_acceptor.771"; gene_name "CUFF.845"; flanks "43483833-,43484465^"; structure "1-,2-"; splice_chain "43483833-,43483784-";
chr6	juncbase	alternative_acceptor	43483851	43484465	.	-	.	gene_id "alternative_acceptor.772"; transcript_id "alternative_acceptor.772"; gene_name "CUFF.845"; flanks "43483851-,43484465^"; structure "1-,2-"; splice_chain "43483851-,43483784-";
chr6	juncbase	alternative_acceptor	43483925	43484465	.	-	.	gene_id "alternative_acceptor.773"; transcript_id "alternative_acceptor.773"; gene_name "CUFF.845"; flanks "43483925-,43484465^"; structure "1-,2-"; splice_chain "43483925-,43483784-";
chr6	juncbase	alternative_acceptor	43483928	43484465	.	-	.	gene_id "alternative_acceptor.774"; transcript_id "alternative_acceptor.774"; gene_name "CUFF.845"; flanks "43483928-,43484465^"; structure "1-,2-"; splice_chain "43483928-,43483925-";
chr6	juncbase	alternative_acceptor	43483833	43484465	.	-	.	gene_id "alternative_acceptor.775"; transcript_id "alternative_acceptor.775"; gene_name "CUFF.845"; flanks "43483833-,43484465^"; structure "1-,2-"; splice_chain "43483925-,43483833-";
chr6	juncbase	alternative_acceptor	43483851	43484465	.	-	.	gene_id "alternative_acceptor.776"; transcript_id "alternative_acceptor.776"; gene_name "CUFF.845"; flanks "43483851-,43484465^"; structure "1-,2-"; splice_chain "43483925-,43483851-";
chr6	juncbase	alternative_acceptor	43483784	43484465	.	-	.	gene_id "alternative_acceptor.777"; transcript_id "alternative_acceptor.777"; gene_name "CUFF.845"; flanks "43483784-,43484465^"; structure "1-,2-"; splice_chain "43483925-,43483784-";
chr6	juncbase	intron_retention	5108786	5104184	.	-	.	gene_id "intron_retention.887"; transcript_id "intron_retention.887"; gene_name ""; flanks "5108786-,5104184^"; structure "0,1^2-"; splice_chain ",5108786^5104184-";
chr6	juncbase	jcn_only_AA	33240503	33243574	.	+	.	gene_id "jcn_only_AA.1025"; transcript_id "jcn_only_AA.1025"; gene_name "CUFF.823"; flanks "33240503-,33243574^"; structure "1-,2-"; splice_chain "33243277-,33243574-";
chr6	juncbase	alternative_donor	29943294	29945431	.	+	.	gene_id "alternative_donor.1146"; transcript_id "alternative_donor.1146"; gene_name "CUFF.810"; flanks "29943294-,29945431^"; structure "1^,2^"; splice_chain "29943294^,29945280^";
chr6	juncbase	jcn_only_AA	43483928	43484465	.	-	.	gene_id "jcn_only_AA.1026"; transcript_id "jcn_only_AA.1026"; gene_name "CUFF.845"; flanks "43483928-,43484465^"; structure "1-,2-"; splice_chain "43483928-,43483925-";
chr6	juncbase	jcn_only_AA	43483833	43484465	.	-	.	gene_id "jcn_only_AA.1027"; transcript_id "jcn_only_AA.1027"; gene_name "CUFF.845"; flanks "43483833-,43484465^"; structure "1-,2-"; splice_chain "43483925-,43483833-";
chr6	juncbase	jcn_only_AA	43483851	43484465	.	-	.	gene_id "jcn_only_AA.1028"; transcript_id "jcn_only_AA.1028"; gene_name "CUFF.845"; flanks "43483851-,43484465^"; structure "1-,2-"; splice_chain "43483925-,43483851-";
chr6	juncbase	jcn_only_AA	43483784	43484465	.	-	.	gene_id "jcn_only_AA.1029"; transcript_id "jcn_only_AA.1029"; gene_name "CUFF.845"; flanks "43483784-,43484465^"; structure "1-,2-"; splice_chain "43483925-,43483784-";
chr6	juncbase	jcn_only_AD	150206809	150240323	.	+	.	gene_id "jcn_only_AD.1362"; transcript_id "jcn_only_AD.1362"; gene_name "CUFF.907"; flanks "150206809-,150240323^"; structure "1^,2^"; splice_chain "150206809^,150217375^";
chr6	juncbase	intron_retention	165241452	165243010	.	+	.	gene_id "intron_retention.888"; transcript_id "intron_retention.888"; gene_name "CUFF.916"; flanks "165241452-,165243010^"; structure "0,1^2-"; splice_chain ",165241452^165243010-";
chr6	juncbase	intron_retention	32122171	32122364	.	+	.	gene_id "intron_retention.889"; transcript_id "intron_retention.889"; gene_name ""; flanks "32122171-,32122364^"; structure "0,1^2-"; splice_chain ",32122171^32122364-";
chr6	juncbase	jcn_only_AD	112666361	112668494	.	+	.	gene_id "jcn_only_AD.1363"; transcript_id "jcn_only_AD.1363"; gene_name "CUFF.875"; flanks "112666361-,112668494^"; structure "1^,2^"; splice_chain "112558117^,112666361^";
chr6	juncbase	jcn_only_AD	112664980	112668494	.	+	.	gene_id "jcn_only_AD.1364"; transcript_id "jcn_only_AD.1364"; gene_name "CUFF.875"; flanks "112664980-,112668494^"; structure "1^,2^"; splice_chain "112558117^,112664980^";
chr6	juncbase	jcn_only_AD	5113305	5109725	.	-	.	gene_id "jcn_only_AD.1365"; transcript_id "jcn_only_AD.1365"; gene_name ""; flanks "5113305-,5109725^"; structure "1^,2^"; splice_chain "5260881^,5113305^";
chr6	juncbase	jcn_only_AD	5144372	5109725	.	-	.	gene_id "jcn_only_AD.1366"; transcript_id "jcn_only_AD.1366"; gene_name ""; flanks "5144372-,5109725^"; structure "1^,2^"; splice_chain "5260881^,5144372^";
chr6	juncbase	jcn_only_AD	5132952	5109725	.	-	.	gene_id "jcn_only_AD.1367"; transcript_id "jcn_only_AD.1367"; gene_name ""; flanks "5132952-,5109725^"; structure "1^,2^"; splice_chain "5260881^,5132952^";
chr6	juncbase	intron_retention	43481097	43480938	.	-	.	gene_id "intron_retention.890"; transcript_id "intron_retention.890"; gene_name "CUFF.845"; flanks "43481097-,43480938^"; structure "0,1^2-"; splice_chain ",43481097^43480938-";
chr6	juncbase	jcn_only_AA	128718833	128841404	.	-	.	gene_id "jcn_only_AA.1030"; transcript_id "jcn_only_AA.1030"; gene_name "CUFF.890"; flanks "128718833-,128841404^"; structure "1-,2-"; splice_chain "128730477-,128718833-";
chr6	juncbase	jcn_only_AA	128812994	128841404	.	-	.	gene_id "jcn_only_AA.1031"; transcript_id "jcn_only_AA.1031"; gene_name "CUFF.890"; flanks "128812994-,128841404^"; structure "1-,2-"; splice_chain "128812994-,128730477-";
chr6	juncbase	jcn_only_AA	128840286	128841404	.	-	.	gene_id "jcn_only_AA.1032"; transcript_id "jcn_only_AA.1032"; gene_name "CUFF.890"; flanks "128840286-,128841404^"; structure "1-,2-"; splice_chain "128840286-,128730477-";
chr6	juncbase	intron_retention	2988943	2989762	.	+	.	gene_id "intron_retention.891"; transcript_id "intron_retention.891"; gene_name ""; flanks "2988943-,2989762^"; structure "0,1^2-"; splice_chain ",2988943^2989762-";
chr6	juncbase	alternative_donor	46623771	46626699	.	+	.	gene_id "alternative_donor.1147"; transcript_id "alternative_donor.1147"; gene_name "CUFF.849"; flanks "46623771-,46626699^"; structure "1^,2^"; splice_chain "46623771^,46626265^";
chr6	juncbase	jcn_only_AA	128812994	128841404	.	-	.	gene_id "jcn_only_AA.1033"; transcript_id "jcn_only_AA.1033"; gene_name "CUFF.890"; flanks "128812994-,128841404^"; structure "1-,2-"; splice_chain "128812994-,128718833-";
chr6	juncbase	jcn_only_AA	128730477	128841404	.	-	.	gene_id "jcn_only_AA.1034"; transcript_id "jcn_only_AA.1034"; gene_name "CUFF.890"; flanks "128730477-,128841404^"; structure "1-,2-"; splice_chain "128730477-,128718833-";
chr6	juncbase	jcn_only_AA	128840286	128841404	.	-	.	gene_id "jcn_only_AA.1035"; transcript_id "jcn_only_AA.1035"; gene_name "CUFF.890"; flanks "128840286-,128841404^"; structure "1-,2-"; splice_chain "128840286-,128718833-";
chr6	juncbase	jcn_only_AD	28116602	28117261	.	+	.	gene_id "jcn_only_AD.1368"; transcript_id "jcn_only_AD.1368"; gene_name "CUFF.807"; flanks "28116602-,28117261^"; structure "1^,2^"; splice_chain "28116602^,28116616^";
chr6	juncbase	cassette	39864973	39859155	.	-	.	gene_id "cassette.601"; transcript_id "cassette.601"; gene_name "CUFF.831"; flanks "39864973-,39859155^"; structure "0,1-2^"; splice_chain ",39859539-39859399^";
chr6	juncbase	jcn_only_AA	43483928	43484465	.	-	.	gene_id "jcn_only_AA.1036"; transcript_id "jcn_only_AA.1036"; gene_name "CUFF.845"; flanks "43483928-,43484465^"; structure "1-,2-"; splice_chain "43483928-,43483784-";
chr6	juncbase	jcn_only_AA	43483833	43484465	.	-	.	gene_id "jcn_only_AA.1037"; transcript_id "jcn_only_AA.1037"; gene_name "CUFF.845"; flanks "43483833-,43484465^"; structure "1-,2-"; splice_chain "43483833-,43483784-";
chr6	juncbase	jcn_only_AA	43483851	43484465	.	-	.	gene_id "jcn_only_AA.1038"; transcript_id "jcn_only_AA.1038"; gene_name "CUFF.845"; flanks "43483851-,43484465^"; structure "1-,2-"; splice_chain "43483851-,43483784-";
chr6	juncbase	jcn_only_AA	43483925	43484465	.	-	.	gene_id "jcn_only_AA.1039"; transcript_id "jcn_only_AA.1039"; gene_name "CUFF.845"; flanks "43483925-,43484465^"; structure "1-,2-"; splice_chain "43483925-,43483784-";
chr6	juncbase	intron_retention	31935859	31936105	.	+	.	gene_id "intron_retention.892"; transcript_id "intron_retention.892"; gene_name "CUFF.814"; flanks "31935859-,31936105^"; structure "0,1^2-"; splice_chain ",31935859^31936105-";
chr6	juncbase	alternative_donor	112375364	112375538	.	+	.	gene_id "alternative_donor.1148"; transcript_id "alternative_donor.1148"; gene_name "CUFF.874"; flanks "112375364-,112375538^"; structure "1^,2^"; splice_chain "112375364^,112375373^";
chr6	juncbase	alternative_acceptor	128718833	128841404	.	-	.	gene_id "alternative_acceptor.778"; transcript_id "alternative_acceptor.778"; gene_name "CUFF.890"; flanks "128718833-,128841404^"; structure "1-,2-"; splice_chain "128840286-,128718833-";
chr6	juncbase	alternative_acceptor	128812994	128841404	.	-	.	gene_id "alternative_acceptor.779"; transcript_id "alternative_acceptor.779"; gene_name "CUFF.890"; flanks "128812994-,128841404^"; structure "1-,2-"; splice_chain "128840286-,128812994-";
chr6	juncbase	alternative_acceptor	128730477	128841404	.	-	.	gene_id "alternative_acceptor.780"; transcript_id "alternative_acceptor.780"; gene_name "CUFF.890"; flanks "128730477-,128841404^"; structure "1-,2-"; splice_chain "128840286-,128730477-";
chr6	juncbase	jcn_only_AA	133055522	133055619	.	-	.	gene_id "jcn_only_AA.1040"; transcript_id "jcn_only_AA.1040"; gene_name "CUFF.894"; flanks "133055522-,133055619^"; structure "1-,2-"; splice_chain "133055525-,133055522-";
chr6	juncbase	alternative_donor	128812877	128718833	.	-	.	gene_id "alternative_donor.1149"; transcript_id "alternative_donor.1149"; gene_name ""; flanks "128812877-,128718833^"; structure "1^,2^"; splice_chain "128841404^,128812877^";
chr6	juncbase	alternative_donor	128730439	128718833	.	-	.	gene_id "alternative_donor.1150"; transcript_id "alternative_donor.1150"; gene_name ""; flanks "128730439-,128718833^"; structure "1^,2^"; splice_chain "128841404^,128730439^";
chr6	juncbase	intron_retention	32122023	32122364	.	+	.	gene_id "intron_retention.893"; transcript_id "intron_retention.893"; gene_name ""; flanks "32122023-,32122364^"; structure "0,1^2-"; splice_chain ",32122023^32122364-";
chr6	juncbase	jcn_only_AD	90218968	90276553	.	+	.	gene_id "jcn_only_AD.1369"; transcript_id "jcn_only_AD.1369"; gene_name "CUFF.865"; flanks "90218968-,90276553^"; structure "1^,2^"; splice_chain "90218968^,90272617^";
chr6	juncbase	jcn_only_AD	90272642	90276553	.	+	.	gene_id "jcn_only_AD.1370"; transcript_id "jcn_only_AD.1370"; gene_name "CUFF.865"; flanks "90272642-,90276553^"; structure "1^,2^"; splice_chain "90272617^,90272642^";
chr6	juncbase	jcn_only_AD	90218677	90276553	.	+	.	gene_id "jcn_only_AD.1371"; transcript_id "jcn_only_AD.1371"; gene_name "CUFF.865"; flanks "90218677-,90276553^"; structure "1^,2^"; splice_chain "90218677^,90272617^";
chr6	juncbase	jcn_only_AD	90193277	90276553	.	+	.	gene_id "jcn_only_AD.1372"; transcript_id "jcn_only_AD.1372"; gene_name "CUFF.865"; flanks "90193277-,90276553^"; structure "1^,2^"; splice_chain "90193277^,90272617^";
chr6	juncbase	jcn_only_AD	114292021	114289860	.	-	.	gene_id "jcn_only_AD.1373"; transcript_id "jcn_only_AD.1373"; gene_name "CUFF.800,CUFF.881"; flanks "114292021-,114289860^"; structure "1^,2^"; splice_chain "114292021^,114291644^";
chr6	juncbase	alternative_acceptor	46638965	46644384	.	+	.	gene_id "alternative_acceptor.781"; transcript_id "alternative_acceptor.781"; gene_name "CUFF.849"; flanks "46638965-,46644384^"; structure "1-,2-"; splice_chain "46644120-,46644384-";
chr6	juncbase	jcn_only_AA	31938924	31939706	.	-	.	gene_id "jcn_only_AA.1041"; transcript_id "jcn_only_AA.1041"; gene_name ""; flanks "31938924-,31939706^"; structure "1-,2-"; splice_chain "31939502-,31938924-";
chr6	juncbase	jcn_only_AA	31939458	31939706	.	-	.	gene_id "jcn_only_AA.1042"; transcript_id "jcn_only_AA.1042"; gene_name ""; flanks "31939458-,31939706^"; structure "1-,2-"; splice_chain "31939502-,31939458-";
chr6	juncbase	jcn_only_AA	31939358	31939706	.	-	.	gene_id "jcn_only_AA.1043"; transcript_id "jcn_only_AA.1043"; gene_name ""; flanks "31939358-,31939706^"; structure "1-,2-"; splice_chain "31939502-,31939358-";
chr6	juncbase	jcn_only_AA	5144496	5216851	.	-	.	gene_id "jcn_only_AA.1044"; transcript_id "jcn_only_AA.1044"; gene_name "CUFF.796"; flanks "5144496-,5216851^"; structure "1-,2-"; splice_chain "5187214-,5144496-";
chr6	juncbase	jcn_only_AA	5113651	5216851	.	-	.	gene_id "jcn_only_AA.1045"; transcript_id "jcn_only_AA.1045"; gene_name "CUFF.796"; flanks "5113651-,5216851^"; structure "1-,2-"; splice_chain "5187214-,5113651-";
chr6	juncbase	jcn_only_AA	5138973	5216851	.	-	.	gene_id "jcn_only_AA.1046"; transcript_id "jcn_only_AA.1046"; gene_name "CUFF.796"; flanks "5138973-,5216851^"; structure "1-,2-"; splice_chain "5187214-,5138973-";
chr6	juncbase	cassette	90327750	90333129	.	+	.	gene_id "cassette.602"; transcript_id "cassette.602"; gene_name "CUFF.865"; flanks "90327750-,90333129^"; structure "0,1-2^"; splice_chain ",90331641-90331745^";
chr6	juncbase	jcn_only_AA	114281182	114289798	.	-	.	gene_id "jcn_only_AA.1047"; transcript_id "jcn_only_AA.1047"; gene_name "CUFF.881"; flanks "114281182-,114289798^"; structure "1-,2-"; splice_chain "114283558-,114281182-";
chr6	juncbase	intron_retention	114291644	114281182	.	-	.	gene_id "intron_retention.894"; transcript_id "intron_retention.894"; gene_name "CUFF.881"; flanks "114291644-,114281182^"; structure "0,1^2-"; splice_chain ",114291644^114281182-";
chr6	juncbase	alternative_acceptor	31938924	31939706	.	-	.	gene_id "alternative_acceptor.782"; transcript_id "alternative_acceptor.782"; gene_name ""; flanks "31938924-,31939706^"; structure "1-,2-"; splice_chain "31939502-,31938924-";
chr6	juncbase	alternative_acceptor	31939458	31939706	.	-	.	gene_id "alternative_acceptor.783"; transcript_id "alternative_acceptor.783"; gene_name ""; flanks "31939458-,31939706^"; structure "1-,2-"; splice_chain "31939502-,31939458-";
chr6	juncbase	alternative_acceptor	31939358	31939706	.	-	.	gene_id "alternative_acceptor.784"; transcript_id "alternative_acceptor.784"; gene_name ""; flanks "31939358-,31939706^"; structure "1-,2-"; splice_chain "31939502-,31939358-";
chr6	juncbase	alternative_donor	128841404	128718833	.	-	.	gene_id "alternative_donor.1151"; transcript_id "alternative_donor.1151"; gene_name "CUFF.890"; flanks "128841404-,128718833^"; structure "1^,2^"; splice_chain "128841404^,128812877^";
chr6	juncbase	alternative_donor	128730439	128718833	.	-	.	gene_id "alternative_donor.1152"; transcript_id "alternative_donor.1152"; gene_name "CUFF.890"; flanks "128730439-,128718833^"; structure "1^,2^"; splice_chain "128812877^,128730439^";
chr6	juncbase	jcn_only_AA	32130399	32132356	.	+	.	gene_id "jcn_only_AA.1048"; transcript_id "jcn_only_AA.1048"; gene_name ""; flanks "32130399-,32132356^"; structure "1-,2-"; splice_chain "32132356-,32133915-";
chr6	juncbase	jcn_only_AA	32130399	32130584	.	+	.	gene_id "jcn_only_AA.1049"; transcript_id "jcn_only_AA.1049"; gene_name ""; flanks "32130399-,32130584^"; structure "1-,2-"; splice_chain "32130584-,32133915-";
chr6	juncbase	jcn_only_AA	5113651	5216851	.	-	.	gene_id "jcn_only_AA.1050"; transcript_id "jcn_only_AA.1050"; gene_name "CUFF.796"; flanks "5113651-,5216851^"; structure "1-,2-"; splice_chain "5144496-,5113651-";
chr6	juncbase	jcn_only_AA	5138973	5216851	.	-	.	gene_id "jcn_only_AA.1051"; transcript_id "jcn_only_AA.1051"; gene_name "CUFF.796"; flanks "5138973-,5216851^"; structure "1-,2-"; splice_chain "5144496-,5138973-";
chr6	juncbase	jcn_only_AA	5187214	5216851	.	-	.	gene_id "jcn_only_AA.1052"; transcript_id "jcn_only_AA.1052"; gene_name "CUFF.796"; flanks "5187214-,5216851^"; structure "1-,2-"; splice_chain "5187214-,5144496-";
chr6	juncbase	jcn_only_AD	90326376	90331641	.	+	.	gene_id "jcn_only_AD.1374"; transcript_id "jcn_only_AD.1374"; gene_name "CUFF.865"; flanks "90326376-,90331641^"; structure "1^,2^"; splice_chain "90326376^,90327750^";
chr6	juncbase	jcn_only_AA	124937642	124962673	.	-	.	gene_id "jcn_only_AA.1053"; transcript_id "jcn_only_AA.1053"; gene_name ""; flanks "124937642-,124962673^"; structure "1-,2-"; splice_chain "124937644-,124937642-";
chr6	juncbase	jcn_only_AA	32122960	32123545	.	+	.	gene_id "jcn_only_AA.1054"; transcript_id "jcn_only_AA.1054"; gene_name "CUFF.875"; flanks "32122960-,32123545^"; structure "1-,2-"; splice_chain "32123465-,32123545-";
chr6	juncbase	intron_retention	133055619	133055522	.	-	.	gene_id "intron_retention.895"; transcript_id "intron_retention.895"; gene_name "CUFF.894"; flanks "133055619-,133055522^"; structure "0,1^2-"; splice_chain ",133055619^133055522-";
chr6	juncbase	jcn_only_AA	43483833	43484465	.	-	.	gene_id "jcn_only_AA.1055"; transcript_id "jcn_only_AA.1055"; gene_name "CUFF.845"; flanks "43483833-,43484465^"; structure "1-,2-"; splice_chain "43483928-,43483833-";
chr6	juncbase	jcn_only_AA	43483851	43484465	.	-	.	gene_id "jcn_only_AA.1056"; transcript_id "jcn_only_AA.1056"; gene_name "CUFF.845"; flanks "43483851-,43484465^"; structure "1-,2-"; splice_chain "43483928-,43483851-";
chr6	juncbase	jcn_only_AA	43483925	43484465	.	-	.	gene_id "jcn_only_AA.1057"; transcript_id "jcn_only_AA.1057"; gene_name "CUFF.845"; flanks "43483925-,43484465^"; structure "1-,2-"; splice_chain "43483928-,43483925-";
chr6	juncbase	jcn_only_AA	43483784	43484465	.	-	.	gene_id "jcn_only_AA.1058"; transcript_id "jcn_only_AA.1058"; gene_name "CUFF.845"; flanks "43483784-,43484465^"; structure "1-,2-"; splice_chain "43483928-,43483784-";
chr6	juncbase	alternative_acceptor	161471011	161491640	.	+	.	gene_id "alternative_acceptor.785"; transcript_id "alternative_acceptor.785"; gene_name "CUFF.914"; flanks "161471011-,161491640^"; structure "1-,2-"; splice_chain "161488231-,161491640-";
chr6	juncbase	cassette	88058624	88066019	.	+	.	gene_id "cassette.603"; transcript_id "cassette.603"; gene_name "CUFF.860"; flanks "88058624-,88066019^"; structure "0,1-2^"; splice_chain ",88060112-88060219^";
chr6	juncbase	alternative_donor	128563666	128561295	.	-	.	gene_id "alternative_donor.1153"; transcript_id "alternative_donor.1153"; gene_name "CUFF.890"; flanks "128563666-,128561295^"; structure "1^,2^"; splice_chain "128563666^,128562368^";
chr6	juncbase	intron_retention	114270332	114270251	.	-	.	gene_id "intron_retention.896"; transcript_id "intron_retention.896"; gene_name "CUFF.881"; flanks "114270332-,114270251^"; structure "0,1^2-"; splice_chain ",114270332^114270251-";
chr6	juncbase	jcn_only_AD	112664980	112668494	.	+	.	gene_id "jcn_only_AD.1375"; transcript_id "jcn_only_AD.1375"; gene_name "CUFF.875"; flanks "112664980-,112668494^"; structure "1^,2^"; splice_chain "112664980^,112666361^";
chr6	juncbase	jcn_only_AD	112558117	112668494	.	+	.	gene_id "jcn_only_AD.1376"; transcript_id "jcn_only_AD.1376"; gene_name "CUFF.875"; flanks "112558117-,112668494^"; structure "1^,2^"; splice_chain "112558117^,112666361^";
chr6	juncbase	alternative_donor	112604729	112627531	.	+	.	gene_id "alternative_donor.1154"; transcript_id "alternative_donor.1154"; gene_name "CUFF.875"; flanks "112604729-,112627531^"; structure "1^,2^"; splice_chain "112604369^,112604729^";
chr6	juncbase	alternative_donor	112604394	112627531	.	+	.	gene_id "alternative_donor.1155"; transcript_id "alternative_donor.1155"; gene_name "CUFF.875"; flanks "112604394-,112627531^"; structure "1^,2^"; splice_chain "112604369^,112604394^";
chr6	juncbase	alternative_donor	112558117	112627531	.	+	.	gene_id "alternative_donor.1156"; transcript_id "alternative_donor.1156"; gene_name "CUFF.875"; flanks "112558117-,112627531^"; structure "1^,2^"; splice_chain "112558117^,112604369^";
chr6	juncbase	alternative_donor	128316394	128313854	.	-	.	gene_id "alternative_donor.1157"; transcript_id "alternative_donor.1157"; gene_name ""; flanks "128316394-,128313854^"; structure "1^,2^"; splice_chain "128316607^,128316394^";
chr6	juncbase	alternative_donor	128316592	128313854	.	-	.	gene_id "alternative_donor.1158"; transcript_id "alternative_donor.1158"; gene_name ""; flanks "128316592-,128313854^"; structure "1^,2^"; splice_chain "128316607^,128316592^";
chr6	juncbase	jcn_only_AD	90337415	90338831	.	+	.	gene_id "jcn_only_AD.1377"; transcript_id "jcn_only_AD.1377"; gene_name "CUFF.865"; flanks "90337415-,90338831^"; structure "1^,2^"; splice_chain "90337415^,90338060^";
chr6	juncbase	jcn_only_AD	112382491	112385958	.	+	.	gene_id "jcn_only_AD.1378"; transcript_id "jcn_only_AD.1378"; gene_name "CUFF.874"; flanks "112382491-,112385958^"; structure "1^,2^"; splice_chain "112382491^,112382598^";
chr6	juncbase	jcn_only_AA	128320049	128322341	.	-	.	gene_id "jcn_only_AA.1059"; transcript_id "jcn_only_AA.1059"; gene_name "CUFF.890"; flanks "128320049-,128322341^"; structure "1-,2-"; splice_chain "128321475-,128320049-";
chr6	juncbase	jcn_only_AA	43483928	43484465	.	-	.	gene_id "jcn_only_AA.1060"; transcript_id "jcn_only_AA.1060"; gene_name "CUFF.845"; flanks "43483928-,43484465^"; structure "1-,2-"; splice_chain "43483928-,43483833-";
chr6	juncbase	jcn_only_AA	43483851	43484465	.	-	.	gene_id "jcn_only_AA.1061"; transcript_id "jcn_only_AA.1061"; gene_name "CUFF.845"; flanks "43483851-,43484465^"; structure "1-,2-"; splice_chain "43483851-,43483833-";
chr6	juncbase	jcn_only_AA	43483925	43484465	.	-	.	gene_id "jcn_only_AA.1062"; transcript_id "jcn_only_AA.1062"; gene_name "CUFF.845"; flanks "43483925-,43484465^"; structure "1-,2-"; splice_chain "43483925-,43483833-";
chr6	juncbase	jcn_only_AA	43483784	43484465	.	-	.	gene_id "jcn_only_AA.1063"; transcript_id "jcn_only_AA.1063"; gene_name "CUFF.845"; flanks "43483784-,43484465^"; structure "1-,2-"; splice_chain "43483833-,43483784-";
chr6	juncbase	jcn_only_AA	170117996	170118884	.	-	.	gene_id "jcn_only_AA.1064"; transcript_id "jcn_only_AA.1064"; gene_name "CUFF.918"; flanks "170117996-,170118884^"; structure "1-,2-"; splice_chain "170118002-,170117996-";
chr6	juncbase	jcn_only_AD	112604729	112627531	.	+	.	gene_id "jcn_only_AD.1379"; transcript_id "jcn_only_AD.1379"; gene_name "CUFF.875"; flanks "112604729-,112627531^"; structure "1^,2^"; splice_chain "112604369^,112604729^";
chr6	juncbase	jcn_only_AD	112604394	112627531	.	+	.	gene_id "jcn_only_AD.1380"; transcript_id "jcn_only_AD.1380"; gene_name "CUFF.875"; flanks "112604394-,112627531^"; structure "1^,2^"; splice_chain "112604369^,112604394^";
chr6	juncbase	jcn_only_AD	112558117	112627531	.	+	.	gene_id "jcn_only_AD.1381"; transcript_id "jcn_only_AD.1381"; gene_name "CUFF.875"; flanks "112558117-,112627531^"; structure "1^,2^"; splice_chain "112558117^,112604369^";
chr6	juncbase	cassette	145142154	145148747	.	+	.	gene_id "cassette.604"; transcript_id "cassette.604"; gene_name "CUFF.904"; flanks "145142154-,145148747^"; structure "0,1-2^"; splice_chain ",145148484-145148522^";
chr6	juncbase	intron_retention	133055619	133055525	.	-	.	gene_id "intron_retention.897"; transcript_id "intron_retention.897"; gene_name ""; flanks "133055619-,133055525^"; structure "0,1^2-"; splice_chain ",133055619^133055525-";
chr6	juncbase	cassette	161529891	161530787	.	+	.	gene_id "cassette.605"; transcript_id "cassette.605"; gene_name "CUFF.914"; flanks "161529891-,161530787^"; structure "0,1-2^"; splice_chain ",161529983-161530073^";
chr6	juncbase	jcn_only_AA	112375608	112382194	.	+	.	gene_id "jcn_only_AA.1065"; transcript_id "jcn_only_AA.1065"; gene_name "CUFF.874"; flanks "112375608-,112382194^"; structure "1-,2-"; splice_chain "112375826-,112382194-";
chr6	juncbase	alternative_donor	126307919	126314903	.	+	.	gene_id "alternative_donor.1159"; transcript_id "alternative_donor.1159"; gene_name "CUFF.886"; flanks "126307919-,126314903^"; structure "1^,2^"; splice_chain "126307768^,126307919^";
chr6	juncbase	alternative_donor	126307836	126314903	.	+	.	gene_id "alternative_donor.1160"; transcript_id "alternative_donor.1160"; gene_name "CUFF.886"; flanks "126307836-,126314903^"; structure "1^,2^"; splice_chain "126307768^,126307836^";
chr6	juncbase	jcn_only_AD	128563666	128561295	.	-	.	gene_id "jcn_only_AD.1382"; transcript_id "jcn_only_AD.1382"; gene_name "CUFF.890"; flanks "128563666-,128561295^"; structure "1^,2^"; splice_chain "128563666^,128562368^";
chr6	juncbase	alternative_acceptor	31938529	31938689	.	-	.	gene_id "alternative_acceptor.786"; transcript_id "alternative_acceptor.786"; gene_name "CUFF.813"; flanks "31938529-,31938689^"; structure "1-,2-"; splice_chain "31938602-,31938529-";
chr6	juncbase	intron_retention	31938383	31938255	.	-	.	gene_id "intron_retention.898"; transcript_id "intron_retention.898"; gene_name ""; flanks "31938383-,31938255^"; structure "0,1^2-"; splice_chain ",31938383^31938255-";
chr6	juncbase	jcn_only_AD	88066221	88074679	.	+	.	gene_id "jcn_only_AD.1383"; transcript_id "jcn_only_AD.1383"; gene_name "CUFF.860"; flanks "88066221-,88074679^"; structure "1^,2^"; splice_chain "88066221^,88068919^";
chr6	juncbase	alternative_donor	128316607	128313854	.	-	.	gene_id "alternative_donor.1161"; transcript_id "alternative_donor.1161"; gene_name "CUFF.890"; flanks "128316607-,128313854^"; structure "1^,2^"; splice_chain "128316607^,128316394^";
chr6	juncbase	alternative_donor	128316592	128313854	.	-	.	gene_id "alternative_donor.1162"; transcript_id "alternative_donor.1162"; gene_name "CUFF.890"; flanks "128316592-,128313854^"; structure "1^,2^"; splice_chain "128316592^,128316394^";
chr6	juncbase	intron_retention	161529891	161529983	.	+	.	gene_id "intron_retention.899"; transcript_id "intron_retention.899"; gene_name "CUFF.914"; flanks "161529891-,161529983^"; structure "0,1^2-"; splice_chain ",161529891^161529983-";
chr6	juncbase	alternative_acceptor	33239899	33240405	.	+	.	gene_id "alternative_acceptor.787"; transcript_id "alternative_acceptor.787"; gene_name "CUFF.823"; flanks "33239899-,33240405^"; structure "1-,2-"; splice_chain "33240364-,33240405-";
chr6	juncbase	jcn_only_AA	112664980	112668494	.	+	.	gene_id "jcn_only_AA.1066"; transcript_id "jcn_only_AA.1066"; gene_name ""; flanks "112664980-,112668494^"; structure "1-,2-"; splice_chain "112666241-,112668494-";
chr6	juncbase	cassette	161455481	161469648	.	+	.	gene_id "cassette.606"; transcript_id "cassette.606"; gene_name "CUFF.914"; flanks "161455481-,161469648^"; structure "0,1-2^"; splice_chain ",161469278-161469323^";
chr6	juncbase	jcn_only_AD	5260881	5109725	.	-	.	gene_id "jcn_only_AD.1384"; transcript_id "jcn_only_AD.1384"; gene_name ""; flanks "5260881-,5109725^"; structure "1^,2^"; splice_chain "5260881^,5113305^";
chr6	juncbase	jcn_only_AD	5144372	5109725	.	-	.	gene_id "jcn_only_AD.1385"; transcript_id "jcn_only_AD.1385"; gene_name ""; flanks "5144372-,5109725^"; structure "1^,2^"; splice_chain "5144372^,5113305^";
chr6	juncbase	jcn_only_AD	5132952	5109725	.	-	.	gene_id "jcn_only_AD.1386"; transcript_id "jcn_only_AD.1386"; gene_name ""; flanks "5132952-,5109725^"; structure "1^,2^"; splice_chain "5132952^,5113305^";
chr6	juncbase	alternative_acceptor	90337415	90338831	.	+	.	gene_id "alternative_acceptor.788"; transcript_id "alternative_acceptor.788"; gene_name "CUFF.815,CUFF.865"; flanks "90337415-,90338831^"; structure "1-,2-"; splice_chain "90337966-,90338831-";
chr6	juncbase	alternative_acceptor	5144496	5216851	.	-	.	gene_id "alternative_acceptor.789"; transcript_id "alternative_acceptor.789"; gene_name "CUFF.796"; flanks "5144496-,5216851^"; structure "1-,2-"; splice_chain "5187214-,5144496-";
chr6	juncbase	alternative_acceptor	5113651	5216851	.	-	.	gene_id "alternative_acceptor.790"; transcript_id "alternative_acceptor.790"; gene_name "CUFF.796"; flanks "5113651-,5216851^"; structure "1-,2-"; splice_chain "5187214-,5113651-";
chr6	juncbase	alternative_acceptor	5138973	5216851	.	-	.	gene_id "alternative_acceptor.791"; transcript_id "alternative_acceptor.791"; gene_name "CUFF.796"; flanks "5138973-,5216851^"; structure "1-,2-"; splice_chain "5187214-,5138973-";
chr6	juncbase	intron_retention	90327750	90331641	.	+	.	gene_id "intron_retention.900"; transcript_id "intron_retention.900"; gene_name "CUFF.865"; flanks "90327750-,90331641^"; structure "0,1^2-"; splice_chain ",90327750^90331641-";
chr6	juncbase	cassette	112386200	112389408	.	+	.	gene_id "cassette.607"; transcript_id "cassette.607"; gene_name "CUFF.874"; flanks "112386200-,112389408^"; structure "0,1-2^"; splice_chain ",112388172-112388235^";
chr6	juncbase	alternative_acceptor	128540241	128561180	.	-	.	gene_id "alternative_acceptor.792"; transcript_id "alternative_acceptor.792"; gene_name "CUFF.890"; flanks "128540241-,128561180^"; structure "1-,2-"; splice_chain "128556749-,128540241-";
chr6	juncbase	cassette	133049880	133046118	.	-	.	gene_id "cassette.608"; transcript_id "cassette.608"; gene_name "CUFF.894"; flanks "133049880-,133046118^"; structure "0,1-2^"; splice_chain ",133047977-133047861^";
chr6	juncbase	cassette	133055392	133046118	.	-	.	gene_id "cassette.609"; transcript_id "cassette.609"; gene_name "CUFF.894"; flanks "133055392-,133046118^"; structure "0,1-2^"; splice_chain ",133047977-133047861^";
chr6	juncbase	jcn_only_AD	128841404	128718833	.	-	.	gene_id "jcn_only_AD.1387"; transcript_id "jcn_only_AD.1387"; gene_name "CUFF.890"; flanks "128841404-,128718833^"; structure "1^,2^"; splice_chain "128841404^,128812877^";
chr6	juncbase	jcn_only_AD	128730439	128718833	.	-	.	gene_id "jcn_only_AD.1388"; transcript_id "jcn_only_AD.1388"; gene_name "CUFF.890"; flanks "128730439-,128718833^"; structure "1^,2^"; splice_chain "128812877^,128730439^";
chr6	juncbase	jcn_only_AA	46638965	46644384	.	+	.	gene_id "jcn_only_AA.1067"; transcript_id "jcn_only_AA.1067"; gene_name "CUFF.849"; flanks "46638965-,46644384^"; structure "1-,2-"; splice_chain "46644120-,46644384-";
chr6	juncbase	cassette	46630235	46636446	.	+	.	gene_id "cassette.610"; transcript_id "cassette.610"; gene_name "CUFF.849"; flanks "46630235-,46636446^"; structure "0,1-2^"; splice_chain ",46632511-46632623^";
chr6	juncbase	jcn_only_AD	43484465	43483928	.	-	.	gene_id "jcn_only_AD.1389"; transcript_id "jcn_only_AD.1389"; gene_name ""; flanks "43484465-,43483928^"; structure "1^,2^"; splice_chain "43484465^,43484234^";
chr6	juncbase	cassette	90333776	90337302	.	+	.	gene_id "cassette.611"; transcript_id "cassette.611"; gene_name "CUFF.865"; flanks "90333776-,90337302^"; structure "0,1-2^"; splice_chain ",90334258-90334410^";
chr6	juncbase	cassette	161518208	161522924	.	+	.	gene_id "cassette.612"; transcript_id "cassette.612"; gene_name "CUFF.914"; flanks "161518208-,161522924^"; structure "0,1-2^"; splice_chain ",161519310-161519459^";
chr6	juncbase	intron_retention	43480807	43480612	.	-	.	gene_id "intron_retention.901"; transcript_id "intron_retention.901"; gene_name "CUFF.845"; flanks "43480807-,43480612^"; structure "0,1^2-"; splice_chain ",43480807^43480612-";
chr6	juncbase	alternative_donor	90326376	90327673	.	+	.	gene_id "alternative_donor.1163"; transcript_id "alternative_donor.1163"; gene_name "CUFF.865"; flanks "90326376-,90327673^"; structure "1^,2^"; splice_chain "90326376^,90326675^";
chr6	juncbase	jcn_only_AD	90338942	90340152	.	+	.	gene_id "jcn_only_AD.1390"; transcript_id "jcn_only_AD.1390"; gene_name "CUFF.865"; flanks "90338942-,90340152^"; structure "1^,2^"; splice_chain "90338942^,90338957^";
chr6	juncbase	cassette	151773151	151757689	.	-	.	gene_id "cassette.613"; transcript_id "cassette.613"; gene_name "CUFF.910"; flanks "151773151-,151757689^"; structure "0,1-2^"; splice_chain ",151766960-151766443^";
chr6	juncbase	alternative_donor	5260881	5109725	.	-	.	gene_id "alternative_donor.1164"; transcript_id "alternative_donor.1164"; gene_name ""; flanks "5260881-,5109725^"; structure "1^,2^"; splice_chain "5260881^,5113305^";
chr6	juncbase	alternative_donor	5144372	5109725	.	-	.	gene_id "alternative_donor.1165"; transcript_id "alternative_donor.1165"; gene_name ""; flanks "5144372-,5109725^"; structure "1^,2^"; splice_chain "5144372^,5113305^";
chr6	juncbase	alternative_donor	5132952	5109725	.	-	.	gene_id "alternative_donor.1166"; transcript_id "alternative_donor.1166"; gene_name ""; flanks "5132952-,5109725^"; structure "1^,2^"; splice_chain "5132952^,5113305^";
chr6	juncbase	jcn_only_AD	31939706	31938924	.	-	.	gene_id "jcn_only_AD.1391"; transcript_id "jcn_only_AD.1391"; gene_name ""; flanks "31939706-,31938924^"; structure "1^,2^"; splice_chain "31939706^,31939097^";
chr6	juncbase	cassette	111306341	111312950	.	+	.	gene_id "cassette.614"; transcript_id "cassette.614"; gene_name "CUFF.872"; flanks "111306341-,111312950^"; structure "0,1-2^"; splice_chain ",111310191-111310268^";
chr6	juncbase	jcn_only_AD	31935859	31936105	.	+	.	gene_id "jcn_only_AD.1392"; transcript_id "jcn_only_AD.1392"; gene_name "CUFF.814"; flanks "31935859-,31936105^"; structure "1^,2^"; splice_chain "31935859^,31935896^";
chr6	juncbase	intron_retention	348841	350822	.	+	.	gene_id "intron_retention.902"; transcript_id "intron_retention.902"; gene_name ""; flanks "348841-,350822^"; structure "0,1^2-"; splice_chain ",348841^350822-";
chr6	juncbase	alternative_acceptor	33240503	33243574	.	+	.	gene_id "alternative_acceptor.793"; transcript_id "alternative_acceptor.793"; gene_name "CUFF.823"; flanks "33240503-,33243574^"; structure "1-,2-"; splice_chain "33243277-,33243574-";
chr6	juncbase	alternative_donor	128330275	128327200	.	-	.	gene_id "alternative_donor.1167"; transcript_id "alternative_donor.1167"; gene_name "CUFF.836,CUFF.890"; flanks "128330275-,128327200^"; structure "1^,2^"; splice_chain "128330275^,128329191^";
chr6	juncbase	alternative_acceptor	128383569	128385903	.	-	.	gene_id "alternative_acceptor.794"; transcript_id "alternative_acceptor.794"; gene_name "CUFF.890"; flanks "128383569-,128385903^"; structure "1-,2-"; splice_chain "128383569-,128330413-";
chr6	juncbase	alternative_acceptor	128330410	128385903	.	-	.	gene_id "alternative_acceptor.795"; transcript_id "alternative_acceptor.795"; gene_name "CUFF.890"; flanks "128330410-,128385903^"; structure "1-,2-"; splice_chain "128330413-,128330410-";
chr6	juncbase	alternative_acceptor	128384670	128385903	.	-	.	gene_id "alternative_acceptor.796"; transcript_id "alternative_acceptor.796"; gene_name "CUFF.890"; flanks "128384670-,128385903^"; structure "1-,2-"; splice_chain "128384670-,128330413-";
chr6	juncbase	alternative_donor	112666361	112668494	.	+	.	gene_id "alternative_donor.1168"; transcript_id "alternative_donor.1168"; gene_name "CUFF.875"; flanks "112666361-,112668494^"; structure "1^,2^"; splice_chain "112664980^,112666361^";
chr6	juncbase	alternative_donor	112558117	112668494	.	+	.	gene_id "alternative_donor.1169"; transcript_id "alternative_donor.1169"; gene_name "CUFF.875"; flanks "112558117-,112668494^"; structure "1^,2^"; splice_chain "112558117^,112664980^";
chr6	juncbase	alternative_donor	161514871	161518112	.	+	.	gene_id "alternative_donor.1170"; transcript_id "alternative_donor.1170"; gene_name "CUFF.914"; flanks "161514871-,161518112^"; structure "1^,2^"; splice_chain "161514871^,161514883^";
chr6	juncbase	alternative_acceptor	133047977	133049880	.	-	.	gene_id "alternative_acceptor.797"; transcript_id "alternative_acceptor.797"; gene_name "CUFF.894"; flanks "133047977-,133049880^"; structure "1-,2-"; splice_chain "133048151-,133047977-";
chr6	juncbase	jcn_only_AD	46623771	46626699	.	+	.	gene_id "jcn_only_AD.1393"; transcript_id "jcn_only_AD.1393"; gene_name "CUFF.849"; flanks "46623771-,46626699^"; structure "1^,2^"; splice_chain "46623771^,46626265^";
chr6	juncbase	intron_retention	33244044	33244168	.	+	.	gene_id "intron_retention.903"; transcript_id "intron_retention.903"; gene_name "CUFF.823"; flanks "33244044-,33244168^"; structure "0,1^2-"; splice_chain ",33244044^33244168-";
chr6	juncbase	jcn_only_AD	112604729	112627531	.	+	.	gene_id "jcn_only_AD.1394"; transcript_id "jcn_only_AD.1394"; gene_name "CUFF.875"; flanks "112604729-,112627531^"; structure "1^,2^"; splice_chain "112558117^,112604729^";
chr6	juncbase	jcn_only_AD	112604394	112627531	.	+	.	gene_id "jcn_only_AD.1395"; transcript_id "jcn_only_AD.1395"; gene_name "CUFF.875"; flanks "112604394-,112627531^"; structure "1^,2^"; splice_chain "112558117^,112604394^";
chr6	juncbase	jcn_only_AD	112604369	112627531	.	+	.	gene_id "jcn_only_AD.1396"; transcript_id "jcn_only_AD.1396"; gene_name "CUFF.875"; flanks "112604369-,112627531^"; structure "1^,2^"; splice_chain "112558117^,112604369^";
chr6	juncbase	intron_retention	43483333	43481371	.	-	.	gene_id "intron_retention.904"; transcript_id "intron_retention.904"; gene_name "CUFF.845"; flanks "43483333-,43481371^"; structure "0,1^2-"; splice_chain ",43483333^43481371-";
chr6	juncbase	alternative_donor	2988265	2989762	.	+	.	gene_id "alternative_donor.1171"; transcript_id "alternative_donor.1171"; gene_name "CUFF.787"; flanks "2988265-,2989762^"; structure "1^,2^"; splice_chain "2988265^,2988943^";
chr6	juncbase	jcn_only_AA	126329891	126332399	.	+	.	gene_id "jcn_only_AA.1068"; transcript_id "jcn_only_AA.1068"; gene_name "CUFF.814,CUFF.886"; flanks "126329891-,126332399^"; structure "1-,2-"; splice_chain "126330481-,126332399-";
chr6	juncbase	intron_retention	43481326	43481189	.	-	.	gene_id "intron_retention.905"; transcript_id "intron_retention.905"; gene_name "CUFF.845"; flanks "43481326-,43481189^"; structure "0,1^2-"; splice_chain ",43481326^43481189-";
chr6	juncbase	alternative_acceptor	31938916	31939097	.	-	.	gene_id "alternative_acceptor.798"; transcript_id "alternative_acceptor.798"; gene_name "CUFF.813"; flanks "31938916-,31939097^"; structure "1-,2-"; splice_chain "31938924-,31938916-";
chr6	juncbase	intron_retention	46644480	46645348	.	+	.	gene_id "intron_retention.906"; transcript_id "intron_retention.906"; gene_name "CUFF.849"; flanks "46644480-,46645348^"; structure "0,1^2-"; splice_chain ",46644480^46645348-";
chr6	juncbase	jcn_only_AD	161514871	161518112	.	+	.	gene_id "jcn_only_AD.1397"; transcript_id "jcn_only_AD.1397"; gene_name "CUFF.914"; flanks "161514871-,161518112^"; structure "1^,2^"; splice_chain "161514871^,161514883^";
chr6	juncbase	jcn_only_AA	33239899	33240405	.	+	.	gene_id "jcn_only_AA.1069"; transcript_id "jcn_only_AA.1069"; gene_name "CUFF.823"; flanks "33239899-,33240405^"; structure "1-,2-"; splice_chain "33240364-,33240405-";
chr6	juncbase	alternative_acceptor	128718833	128841404	.	-	.	gene_id "alternative_acceptor.799"; transcript_id "alternative_acceptor.799"; gene_name "CUFF.890"; flanks "128718833-,128841404^"; structure "1-,2-"; splice_chain "128812994-,128718833-";
chr6	juncbase	alternative_acceptor	128730477	128841404	.	-	.	gene_id "alternative_acceptor.800"; transcript_id "alternative_acceptor.800"; gene_name "CUFF.890"; flanks "128730477-,128841404^"; structure "1-,2-"; splice_chain "128812994-,128730477-";
chr6	juncbase	alternative_acceptor	128840286	128841404	.	-	.	gene_id "alternative_acceptor.801"; transcript_id "alternative_acceptor.801"; gene_name "CUFF.890"; flanks "128840286-,128841404^"; structure "1-,2-"; splice_chain "128840286-,128812994-";
chr6	juncbase	jcn_only_AA	2988265	2989762	.	+	.	gene_id "jcn_only_AA.1070"; transcript_id "jcn_only_AA.1070"; gene_name "CUFF.787"; flanks "2988265-,2989762^"; structure "1-,2-"; splice_chain "2988662-,2989762-";
chr6	juncbase	cassette	32121413	32122364	.	+	.	gene_id "cassette.615"; transcript_id "cassette.615"; gene_name "CUFF.815"; flanks "32121413-,32122364^"; structure "0,1-2^"; splice_chain ",32121973-32122181^";
chr6	juncbase	alternative_acceptor	31936315	31936463	.	+	.	gene_id "alternative_acceptor.802"; transcript_id "alternative_acceptor.802"; gene_name "CUFF.814,CUFF.823"; flanks "31936315-,31936463^"; structure "1-,2-"; splice_chain "31936400-,31936463-";
chr6	juncbase	alternative_donor	151757581	151754365	.	-	.	gene_id "alternative_donor.1172"; transcript_id "alternative_donor.1172"; gene_name "CUFF.910"; flanks "151757581-,151754365^"; structure "1^,2^"; splice_chain "151757581^,151757555^";
chr6	juncbase	intron_retention	133055392	133050072	.	-	.	gene_id "intron_retention.907"; transcript_id "intron_retention.907"; gene_name "CUFF.894"; flanks "133055392-,133050072^"; structure "0,1^2-"; splice_chain ",133055392^133050072-";
chr6	juncbase	jcn_only_AD	90272617	90276553	.	+	.	gene_id "jcn_only_AD.1398"; transcript_id "jcn_only_AD.1398"; gene_name "CUFF.865"; flanks "90272617-,90276553^"; structure "1^,2^"; splice_chain "90218968^,90272617^";
chr6	juncbase	jcn_only_AD	90272642	90276553	.	+	.	gene_id "jcn_only_AD.1399"; transcript_id "jcn_only_AD.1399"; gene_name "CUFF.865"; flanks "90272642-,90276553^"; structure "1^,2^"; splice_chain "90218968^,90272642^";
chr6	juncbase	jcn_only_AD	90218677	90276553	.	+	.	gene_id "jcn_only_AD.1400"; transcript_id "jcn_only_AD.1400"; gene_name "CUFF.865"; flanks "90218677-,90276553^"; structure "1^,2^"; splice_chain "90218677^,90218968^";
chr6	juncbase	jcn_only_AD	90193277	90276553	.	+	.	gene_id "jcn_only_AD.1401"; transcript_id "jcn_only_AD.1401"; gene_name "CUFF.865"; flanks "90193277-,90276553^"; structure "1^,2^"; splice_chain "90193277^,90218968^";
chr6	juncbase	jcn_only_AA	31939458	31939706	.	-	.	gene_id "jcn_only_AA.1071"; transcript_id "jcn_only_AA.1071"; gene_name ""; flanks "31939458-,31939706^"; structure "1-,2-"; splice_chain "31939458-,31938924-";
chr6	juncbase	jcn_only_AA	31939502	31939706	.	-	.	gene_id "jcn_only_AA.1072"; transcript_id "jcn_only_AA.1072"; gene_name ""; flanks "31939502-,31939706^"; structure "1-,2-"; splice_chain "31939502-,31938924-";
chr6	juncbase	jcn_only_AA	31939358	31939706	.	-	.	gene_id "jcn_only_AA.1073"; transcript_id "jcn_only_AA.1073"; gene_name ""; flanks "31939358-,31939706^"; structure "1-,2-"; splice_chain "31939358-,31938924-";
chr6	juncbase	intron_retention	31936573	31936648	.	+	.	gene_id "intron_retention.908"; transcript_id "intron_retention.908"; gene_name "CUFF.814"; flanks "31936573-,31936648^"; structure "0,1^2-"; splice_chain ",31936573^31936648-";
chr6	juncbase	jcn_only_AD	112558117	112604256	.	+	.	gene_id "jcn_only_AD.1402"; transcript_id "jcn_only_AD.1402"; gene_name ""; flanks "112558117-,112604256^"; structure "1^,2^"; splice_chain "112558117^,112600440^";
chr6	juncbase	jcn_only_AA	128383569	128385903	.	-	.	gene_id "jcn_only_AA.1074"; transcript_id "jcn_only_AA.1074"; gene_name "CUFF.890"; flanks "128383569-,128385903^"; structure "1-,2-"; splice_chain "128383569-,128330410-";
chr6	juncbase	jcn_only_AA	128330413	128385903	.	-	.	gene_id "jcn_only_AA.1075"; transcript_id "jcn_only_AA.1075"; gene_name "CUFF.890"; flanks "128330413-,128385903^"; structure "1-,2-"; splice_chain "128330413-,128330410-";
chr6	juncbase	jcn_only_AA	128384670	128385903	.	-	.	gene_id "jcn_only_AA.1076"; transcript_id "jcn_only_AA.1076"; gene_name "CUFF.890"; flanks "128384670-,128385903^"; structure "1-,2-"; splice_chain "128384670-,128330410-";
chr6	juncbase	jcn_only_AD	128841404	128718833	.	-	.	gene_id "jcn_only_AD.1403"; transcript_id "jcn_only_AD.1403"; gene_name "CUFF.890"; flanks "128841404-,128718833^"; structure "1^,2^"; splice_chain "128841404^,128730439^";
chr6	juncbase	jcn_only_AD	128812877	128718833	.	-	.	gene_id "jcn_only_AD.1404"; transcript_id "jcn_only_AD.1404"; gene_name "CUFF.890"; flanks "128812877-,128718833^"; structure "1^,2^"; splice_chain "128812877^,128730439^";
chr6	juncbase	alternative_donor	43484465	43483928	.	-	.	gene_id "alternative_donor.1173"; transcript_id "alternative_donor.1173"; gene_name ""; flanks "43484465-,43483928^"; structure "1^,2^"; splice_chain "43484465^,43484234^";
chr6	juncbase	alternative_donor	90218968	90276553	.	+	.	gene_id "alternative_donor.1174"; transcript_id "alternative_donor.1174"; gene_name "CUFF.865"; flanks "90218968-,90276553^"; structure "1^,2^"; splice_chain "90218968^,90272617^";
chr6	juncbase	alternative_donor	90272642	90276553	.	+	.	gene_id "alternative_donor.1175"; transcript_id "alternative_donor.1175"; gene_name "CUFF.865"; flanks "90272642-,90276553^"; structure "1^,2^"; splice_chain "90272617^,90272642^";
chr6	juncbase	alternative_donor	90218677	90276553	.	+	.	gene_id "alternative_donor.1176"; transcript_id "alternative_donor.1176"; gene_name "CUFF.865"; flanks "90218677-,90276553^"; structure "1^,2^"; splice_chain "90218677^,90272617^";
chr6	juncbase	alternative_donor	90193277	90276553	.	+	.	gene_id "alternative_donor.1177"; transcript_id "alternative_donor.1177"; gene_name "CUFF.865"; flanks "90193277-,90276553^"; structure "1^,2^"; splice_chain "90193277^,90272617^";
chr6	juncbase	jcn_only_AA	31938916	31939097	.	-	.	gene_id "jcn_only_AA.1077"; transcript_id "jcn_only_AA.1077"; gene_name "CUFF.813"; flanks "31938916-,31939097^"; structure "1-,2-"; splice_chain "31938924-,31938916-";
chr6	juncbase	intron_retention	114270143	114267312	.	-	.	gene_id "intron_retention.909"; transcript_id "intron_retention.909"; gene_name "CUFF.881"; flanks "114270143-,114267312^"; structure "0,1^2-"; splice_chain ",114270143^114267312-";
chr6	juncbase	cassette	170115804	170112635	.	-	.	gene_id "cassette.616"; transcript_id "cassette.616"; gene_name "CUFF.918"; flanks "170115804-,170112635^"; structure "0,1-2^"; splice_chain ",170114938-170114829^";
chr6	juncbase	jcn_only_AD	33240503	33243574	.	+	.	gene_id "jcn_only_AD.1405"; transcript_id "jcn_only_AD.1405"; gene_name "CUFF.823"; flanks "33240503-,33243574^"; structure "1^,2^"; splice_chain "33240503^,33243434^";
chr6	juncbase	jcn_only_AA	116988075	116989729	.	-	.	gene_id "jcn_only_AA.1078"; transcript_id "jcn_only_AA.1078"; gene_name "CUFF.882"; flanks "116988075-,116989729^"; structure "1-,2-"; splice_chain "116988370-,116988075-";
chr6	juncbase	alternative_acceptor	2988265	2989762	.	+	.	gene_id "alternative_acceptor.803"; transcript_id "alternative_acceptor.803"; gene_name "CUFF.787"; flanks "2988265-,2989762^"; structure "1-,2-"; splice_chain "2988662-,2989762-";
chr6	juncbase	alternative_acceptor	128383569	128385903	.	-	.	gene_id "alternative_acceptor.804"; transcript_id "alternative_acceptor.804"; gene_name "CUFF.890"; flanks "128383569-,128385903^"; structure "1-,2-"; splice_chain "128383569-,128330410-";
chr6	juncbase	alternative_acceptor	128330413	128385903	.	-	.	gene_id "alternative_acceptor.805"; transcript_id "alternative_acceptor.805"; gene_name "CUFF.890"; flanks "128330413-,128385903^"; structure "1-,2-"; splice_chain "128330413-,128330410-";
chr6	juncbase	alternative_acceptor	128384670	128385903	.	-	.	gene_id "alternative_acceptor.806"; transcript_id "alternative_acceptor.806"; gene_name "CUFF.890"; flanks "128384670-,128385903^"; structure "1-,2-"; splice_chain "128384670-,128330410-";
chr6	juncbase	jcn_only_AA	32130399	32133915	.	+	.	gene_id "jcn_only_AA.1079"; transcript_id "jcn_only_AA.1079"; gene_name ""; flanks "32130399-,32133915^"; structure "1-,2-"; splice_chain "32132356-,32133915-";
chr6	juncbase	jcn_only_AA	32130399	32130584	.	+	.	gene_id "jcn_only_AA.1080"; transcript_id "jcn_only_AA.1080"; gene_name ""; flanks "32130399-,32130584^"; structure "1-,2-"; splice_chain "32130584-,32132356-";
chr6	juncbase	cassette	31928871	31929324	.	+	.	gene_id "cassette.617"; transcript_id "cassette.617"; gene_name "CUFF.814"; flanks "31928871-,31929324^"; structure "0,1-2^"; splice_chain ",31928973-31929163^";
chr6	juncbase	intron_retention	31937093	31937292	.	+	.	gene_id "intron_retention.910"; transcript_id "intron_retention.910"; gene_name ""; flanks "31937093-,31937292^"; structure "0,1^2-"; splice_chain ",31937093^31937292-";
chr6	juncbase	jcn_only_AD	128316394	128313854	.	-	.	gene_id "jcn_only_AD.1406"; transcript_id "jcn_only_AD.1406"; gene_name ""; flanks "128316394-,128313854^"; structure "1^,2^"; splice_chain "128316607^,128316394^";
chr6	juncbase	jcn_only_AD	128316592	128313854	.	-	.	gene_id "jcn_only_AD.1407"; transcript_id "jcn_only_AD.1407"; gene_name ""; flanks "128316592-,128313854^"; structure "1^,2^"; splice_chain "128316607^,128316592^";
chr6	juncbase	intron_retention	114279813	114277857	.	-	.	gene_id "intron_retention.911"; transcript_id "intron_retention.911"; gene_name "CUFF.881"; flanks "114279813-,114277857^"; structure "0,1^2-"; splice_chain ",114279813^114277857-";
chr6	juncbase	intron_retention	31938689	31938529	.	-	.	gene_id "intron_retention.912"; transcript_id "intron_retention.912"; gene_name ""; flanks "31938689-,31938529^"; structure "0,1^2-"; splice_chain ",31938689^31938529-";
chr6	juncbase	jcn_only_AD	29943294	29945431	.	+	.	gene_id "jcn_only_AD.1408"; transcript_id "jcn_only_AD.1408"; gene_name "CUFF.810"; flanks "29943294-,29945431^"; structure "1^,2^"; splice_chain "29943294^,29945280^";
chr6	juncbase	cassette	126329618	126332399	.	+	.	gene_id "cassette.618"; transcript_id "cassette.618"; gene_name "CUFF.886"; flanks "126329618-,126332399^"; structure "0,1-2^"; splice_chain ",126329803-126329891^";
chr6	juncbase	alternative_donor	126307919	126314903	.	+	.	gene_id "alternative_donor.1178"; transcript_id "alternative_donor.1178"; gene_name "CUFF.886"; flanks "126307919-,126314903^"; structure "1^,2^"; splice_chain "126307836^,126307919^";
chr6	juncbase	alternative_donor	126307768	126314903	.	+	.	gene_id "alternative_donor.1179"; transcript_id "alternative_donor.1179"; gene_name "CUFF.886"; flanks "126307768-,126314903^"; structure "1^,2^"; splice_chain "126307768^,126307836^";
chr6	juncbase	cassette	133055392	133047977	.	-	.	gene_id "cassette.619"; transcript_id "cassette.619"; gene_name "CUFF.894"; flanks "133055392-,133047977^"; structure "0,1-2^"; splice_chain ",133050072-133049880^";
chr6	juncbase	cassette	133055392	133046118	.	-	.	gene_id "cassette.620"; transcript_id "cassette.620"; gene_name "CUFF.894"; flanks "133055392-,133046118^"; structure "0,1-2^"; splice_chain ",133050072-133049880^";
chr6	juncbase	cassette	133055392	133048151	.	-	.	gene_id "cassette.621"; transcript_id "cassette.621"; gene_name "CUFF.894"; flanks "133055392-,133048151^"; structure "0,1-2^"; splice_chain ",133050072-133049880^";
chr6	juncbase	alternative_donor	112604394	112627531	.	+	.	gene_id "alternative_donor.1180"; transcript_id "alternative_donor.1180"; gene_name "CUFF.875"; flanks "112604394-,112627531^"; structure "1^,2^"; splice_chain "112604394^,112604729^";
chr6	juncbase	alternative_donor	112604369	112627531	.	+	.	gene_id "alternative_donor.1181"; transcript_id "alternative_donor.1181"; gene_name "CUFF.875"; flanks "112604369-,112627531^"; structure "1^,2^"; splice_chain "112604369^,112604729^";
chr6	juncbase	alternative_donor	112558117	112627531	.	+	.	gene_id "alternative_donor.1182"; transcript_id "alternative_donor.1182"; gene_name "CUFF.875"; flanks "112558117-,112627531^"; structure "1^,2^"; splice_chain "112558117^,112604729^";
chr6	juncbase	alternative_acceptor	128313854	128316607	.	-	.	gene_id "alternative_acceptor.807"; transcript_id "alternative_acceptor.807"; gene_name "CUFF.890"; flanks "128313854-,128316607^"; structure "1-,2-"; splice_chain "128316411-,128313854-";
chr6	juncbase	alternative_donor	90218968	90276553	.	+	.	gene_id "alternative_donor.1183"; transcript_id "alternative_donor.1183"; gene_name "CUFF.865"; flanks "90218968-,90276553^"; structure "1^,2^"; splice_chain "90193277^,90218968^";
chr6	juncbase	alternative_donor	90272617	90276553	.	+	.	gene_id "alternative_donor.1184"; transcript_id "alternative_donor.1184"; gene_name "CUFF.865"; flanks "90272617-,90276553^"; structure "1^,2^"; splice_chain "90193277^,90272617^";
chr6	juncbase	alternative_donor	90272642	90276553	.	+	.	gene_id "alternative_donor.1185"; transcript_id "alternative_donor.1185"; gene_name "CUFF.865"; flanks "90272642-,90276553^"; structure "1^,2^"; splice_chain "90193277^,90272642^";
chr6	juncbase	alternative_donor	90218677	90276553	.	+	.	gene_id "alternative_donor.1186"; transcript_id "alternative_donor.1186"; gene_name "CUFF.865"; flanks "90218677-,90276553^"; structure "1^,2^"; splice_chain "90193277^,90218677^";
chr6	juncbase	alternative_donor	90218968	90276553	.	+	.	gene_id "alternative_donor.1187"; transcript_id "alternative_donor.1187"; gene_name "CUFF.865"; flanks "90218968-,90276553^"; structure "1^,2^"; splice_chain "90218677^,90218968^";
chr6	juncbase	alternative_donor	90272617	90276553	.	+	.	gene_id "alternative_donor.1188"; transcript_id "alternative_donor.1188"; gene_name "CUFF.865"; flanks "90272617-,90276553^"; structure "1^,2^"; splice_chain "90218677^,90272617^";
chr6	juncbase	alternative_donor	90272642	90276553	.	+	.	gene_id "alternative_donor.1189"; transcript_id "alternative_donor.1189"; gene_name "CUFF.865"; flanks "90272642-,90276553^"; structure "1^,2^"; splice_chain "90218677^,90272642^";
chr6	juncbase	alternative_donor	90193277	90276553	.	+	.	gene_id "alternative_donor.1190"; transcript_id "alternative_donor.1190"; gene_name "CUFF.865"; flanks "90193277-,90276553^"; structure "1^,2^"; splice_chain "90193277^,90218677^";
chr6	juncbase	jcn_only_AD	75993936	75977464	.	-	.	gene_id "jcn_only_AD.1409"; transcript_id "jcn_only_AD.1409"; gene_name "CUFF.858"; flanks "75993936-,75977464^"; structure "1^,2^"; splice_chain "75993936^,75982180^";
chr6	juncbase	alternative_acceptor	5144496	5216851	.	-	.	gene_id "alternative_acceptor.808"; transcript_id "alternative_acceptor.808"; gene_name "CUFF.796"; flanks "5144496-,5216851^"; structure "1-,2-"; splice_chain "5144496-,5113651-";
chr6	juncbase	alternative_acceptor	5138973	5216851	.	-	.	gene_id "alternative_acceptor.809"; transcript_id "alternative_acceptor.809"; gene_name "CUFF.796"; flanks "5138973-,5216851^"; structure "1-,2-"; splice_chain "5138973-,5113651-";
chr6	juncbase	alternative_acceptor	5187214	5216851	.	-	.	gene_id "alternative_acceptor.810"; transcript_id "alternative_acceptor.810"; gene_name "CUFF.796"; flanks "5187214-,5216851^"; structure "1-,2-"; splice_chain "5187214-,5113651-";
chr6	juncbase	jcn_only_AD	5113305	5109725	.	-	.	gene_id "jcn_only_AD.1410"; transcript_id "jcn_only_AD.1410"; gene_name ""; flanks "5113305-,5109725^"; structure "1^,2^"; splice_chain "5132952^,5113305^";
chr6	juncbase	jcn_only_AD	5260881	5109725	.	-	.	gene_id "jcn_only_AD.1411"; transcript_id "jcn_only_AD.1411"; gene_name ""; flanks "5260881-,5109725^"; structure "1^,2^"; splice_chain "5260881^,5132952^";
chr6	juncbase	jcn_only_AD	5144372	5109725	.	-	.	gene_id "jcn_only_AD.1412"; transcript_id "jcn_only_AD.1412"; gene_name ""; flanks "5144372-,5109725^"; structure "1^,2^"; splice_chain "5144372^,5132952^";
chr6	juncbase	alternative_donor	31937093	31937292	.	+	.	gene_id "alternative_donor.1191"; transcript_id "alternative_donor.1191"; gene_name "CUFF.814"; flanks "31937093-,31937292^"; structure "1^,2^"; splice_chain "31937093^,31937197^";
chr6	juncbase	alternative_donor	5113305	5109725	.	-	.	gene_id "alternative_donor.1192"; transcript_id "alternative_donor.1192"; gene_name ""; flanks "5113305-,5109725^"; structure "1^,2^"; splice_chain "5132952^,5113305^";
chr6	juncbase	alternative_donor	5260881	5109725	.	-	.	gene_id "alternative_donor.1193"; transcript_id "alternative_donor.1193"; gene_name ""; flanks "5260881-,5109725^"; structure "1^,2^"; splice_chain "5260881^,5132952^";
chr6	juncbase	alternative_donor	5144372	5109725	.	-	.	gene_id "alternative_donor.1194"; transcript_id "alternative_donor.1194"; gene_name ""; flanks "5144372-,5109725^"; structure "1^,2^"; splice_chain "5144372^,5132952^";
chr6	juncbase	alternative_donor	112664980	112668494	.	+	.	gene_id "alternative_donor.1195"; transcript_id "alternative_donor.1195"; gene_name "CUFF.875"; flanks "112664980-,112668494^"; structure "1^,2^"; splice_chain "112664980^,112666361^";
chr6	juncbase	alternative_donor	112558117	112668494	.	+	.	gene_id "alternative_donor.1196"; transcript_id "alternative_donor.1196"; gene_name "CUFF.875"; flanks "112558117-,112668494^"; structure "1^,2^"; splice_chain "112558117^,112666361^";
chr6	juncbase	alternative_acceptor	128812994	128841404	.	-	.	gene_id "alternative_acceptor.811"; transcript_id "alternative_acceptor.811"; gene_name "CUFF.890"; flanks "128812994-,128841404^"; structure "1-,2-"; splice_chain "128812994-,128718833-";
chr6	juncbase	alternative_acceptor	128730477	128841404	.	-	.	gene_id "alternative_acceptor.812"; transcript_id "alternative_acceptor.812"; gene_name "CUFF.890"; flanks "128730477-,128841404^"; structure "1-,2-"; splice_chain "128730477-,128718833-";
chr6	juncbase	alternative_acceptor	128840286	128841404	.	-	.	gene_id "alternative_acceptor.813"; transcript_id "alternative_acceptor.813"; gene_name "CUFF.890"; flanks "128840286-,128841404^"; structure "1-,2-"; splice_chain "128840286-,128718833-";
chr6	juncbase	jcn_only_AD	128316394	128313854	.	-	.	gene_id "jcn_only_AD.1413"; transcript_id "jcn_only_AD.1413"; gene_name "CUFF.890"; flanks "128316394-,128313854^"; structure "1^,2^"; splice_chain "128316592^,128316394^";
chr6	juncbase	jcn_only_AD	128316607	128313854	.	-	.	gene_id "jcn_only_AD.1414"; transcript_id "jcn_only_AD.1414"; gene_name "CUFF.890"; flanks "128316607-,128313854^"; structure "1^,2^"; splice_chain "128316607^,128316592^";
chr6	juncbase	jcn_only_AA	128383569	128385903	.	-	.	gene_id "jcn_only_AA.1081"; transcript_id "jcn_only_AA.1081"; gene_name "CUFF.890"; flanks "128383569-,128385903^"; structure "1-,2-"; splice_chain "128384670-,128383569-";
chr6	juncbase	jcn_only_AA	128330410	128385903	.	-	.	gene_id "jcn_only_AA.1082"; transcript_id "jcn_only_AA.1082"; gene_name "CUFF.890"; flanks "128330410-,128385903^"; structure "1-,2-"; splice_chain "128384670-,128330410-";
chr6	juncbase	jcn_only_AA	128330413	128385903	.	-	.	gene_id "jcn_only_AA.1083"; transcript_id "jcn_only_AA.1083"; gene_name "CUFF.890"; flanks "128330413-,128385903^"; structure "1-,2-"; splice_chain "128384670-,128330413-";
chr6	juncbase	jcn_only_AD	151757581	151754365	.	-	.	gene_id "jcn_only_AD.1415"; transcript_id "jcn_only_AD.1415"; gene_name "CUFF.910"; flanks "151757581-,151754365^"; structure "1^,2^"; splice_chain "151757581^,151757555^";
chr6	juncbase	intron_retention	43480499	43480301	.	-	.	gene_id "intron_retention.913"; transcript_id "intron_retention.913"; gene_name "CUFF.845"; flanks "43480499-,43480301^"; structure "0,1^2-"; splice_chain ",43480499^43480301-";
chr6	juncbase	alternative_acceptor	31939458	31939706	.	-	.	gene_id "alternative_acceptor.814"; transcript_id "alternative_acceptor.814"; gene_name ""; flanks "31939458-,31939706^"; structure "1-,2-"; splice_chain "31939458-,31938924-";
chr6	juncbase	alternative_acceptor	31939502	31939706	.	-	.	gene_id "alternative_acceptor.815"; transcript_id "alternative_acceptor.815"; gene_name ""; flanks "31939502-,31939706^"; structure "1-,2-"; splice_chain "31939502-,31938924-";
chr6	juncbase	alternative_acceptor	31939358	31939706	.	-	.	gene_id "alternative_acceptor.816"; transcript_id "alternative_acceptor.816"; gene_name ""; flanks "31939358-,31939706^"; structure "1-,2-"; splice_chain "31939358-,31938924-";
chr6	juncbase	intron_retention	31930575	31930762	.	+	.	gene_id "intron_retention.914"; transcript_id "intron_retention.914"; gene_name "CUFF.814"; flanks "31930575-,31930762^"; structure "0,1^2-"; splice_chain ",31930575^31930762-";
chr6	juncbase	alternative_acceptor	112604394	112627531	.	+	.	gene_id "alternative_acceptor.817"; transcript_id "alternative_acceptor.817"; gene_name ""; flanks "112604394-,112627531^"; structure "1-,2-"; splice_chain "112604500-,112627531-";
chr6	juncbase	jcn_only_AA	43480836	43481097	.	-	.	gene_id "jcn_only_AA.1084"; transcript_id "jcn_only_AA.1084"; gene_name "CUFF.845"; flanks "43480836-,43481097^"; structure "1-,2-"; splice_chain "43480938-,43480836-";
chr6	juncbase	cassette	304661	335114	.	+	.	gene_id "cassette.622"; transcript_id "cassette.622"; gene_name "CUFF.780"; flanks "304661-,335114^"; structure "0,1-2^"; splice_chain ",311880-311962^";
chr6	juncbase	cassette	292560	345854	.	+	.	gene_id "cassette.623"; transcript_id "cassette.623"; gene_name "CUFF.780"; flanks "292560-,345854^"; structure "0,1-2^"; splice_chain ",311880-311962^";
chr6	juncbase	alternative_donor	33240503	33243574	.	+	.	gene_id "alternative_donor.1197"; transcript_id "alternative_donor.1197"; gene_name "CUFF.823"; flanks "33240503-,33243574^"; structure "1^,2^"; splice_chain "33240503^,33243434^";
chr6	juncbase	jcn_only_AD	90218968	90276553	.	+	.	gene_id "jcn_only_AD.1416"; transcript_id "jcn_only_AD.1416"; gene_name "CUFF.865"; flanks "90218968-,90276553^"; structure "1^,2^"; splice_chain "90193277^,90218968^";
chr6	juncbase	jcn_only_AD	90272617	90276553	.	+	.	gene_id "jcn_only_AD.1417"; transcript_id "jcn_only_AD.1417"; gene_name "CUFF.865"; flanks "90272617-,90276553^"; structure "1^,2^"; splice_chain "90193277^,90272617^";
chr6	juncbase	jcn_only_AD	90272642	90276553	.	+	.	gene_id "jcn_only_AD.1418"; transcript_id "jcn_only_AD.1418"; gene_name "CUFF.865"; flanks "90272642-,90276553^"; structure "1^,2^"; splice_chain "90193277^,90272642^";
chr6	juncbase	jcn_only_AD	90218677	90276553	.	+	.	gene_id "jcn_only_AD.1419"; transcript_id "jcn_only_AD.1419"; gene_name "CUFF.865"; flanks "90218677-,90276553^"; structure "1^,2^"; splice_chain "90193277^,90218677^";
chr6	juncbase	cassette	90312846	90321991	.	+	.	gene_id "cassette.624"; transcript_id "cassette.624"; gene_name "CUFF.865"; flanks "90312846-,90321991^"; structure "0,1-2^"; splice_chain ",90315726-90315824^";
chr6	juncbase	intron_retention	2989967	2990103	.	+	.	gene_id "intron_retention.915"; transcript_id "intron_retention.915"; gene_name ""; flanks "2989967-,2990103^"; structure "0,1^2-"; splice_chain ",2989967^2990103-";
chr6	juncbase	jcn_only_AD	90218968	90276553	.	+	.	gene_id "jcn_only_AD.1420"; transcript_id "jcn_only_AD.1420"; gene_name "CUFF.865"; flanks "90218968-,90276553^"; structure "1^,2^"; splice_chain "90218968^,90272642^";
chr6	juncbase	jcn_only_AD	90272617	90276553	.	+	.	gene_id "jcn_only_AD.1421"; transcript_id "jcn_only_AD.1421"; gene_name "CUFF.865"; flanks "90272617-,90276553^"; structure "1^,2^"; splice_chain "90272617^,90272642^";
chr6	juncbase	jcn_only_AD	90218677	90276553	.	+	.	gene_id "jcn_only_AD.1422"; transcript_id "jcn_only_AD.1422"; gene_name "CUFF.865"; flanks "90218677-,90276553^"; structure "1^,2^"; splice_chain "90218677^,90272642^";
chr6	juncbase	jcn_only_AD	90193277	90276553	.	+	.	gene_id "jcn_only_AD.1423"; transcript_id "jcn_only_AD.1423"; gene_name "CUFF.865"; flanks "90193277-,90276553^"; structure "1^,2^"; splice_chain "90193277^,90272642^";
chr6	juncbase	jcn_only_AA	43481371	43483333	.	-	.	gene_id "jcn_only_AA.1085"; transcript_id "jcn_only_AA.1085"; gene_name "CUFF.845"; flanks "43481371-,43483333^"; structure "1-,2-"; splice_chain "43483044-,43481371-";
chr6	juncbase	jcn_only_AA	112604394	112627531	.	+	.	gene_id "jcn_only_AA.1086"; transcript_id "jcn_only_AA.1086"; gene_name ""; flanks "112604394-,112627531^"; structure "1-,2-"; splice_chain "112604500-,112627531-";
chr6	juncbase	alternative_acceptor	126329891	126332399	.	+	.	gene_id "alternative_acceptor.818"; transcript_id "alternative_acceptor.818"; gene_name "CUFF.814,CUFF.886"; flanks "126329891-,126332399^"; structure "1-,2-"; splice_chain "126330481-,126332399-";
chr6	juncbase	alternative_donor	75993936	75977464	.	-	.	gene_id "alternative_donor.1198"; transcript_id "alternative_donor.1198"; gene_name "CUFF.858"; flanks "75993936-,75977464^"; structure "1^,2^"; splice_chain "75993936^,75982180^";
chr6	juncbase	cassette	128330275	128326389	.	-	.	gene_id "cassette.625"; transcript_id "cassette.625"; gene_name "CUFF.890"; flanks "128330275-,128326389^"; structure "0,1-2^"; splice_chain ",128327200-128327171^";
chr6	juncbase	jcn_only_AA	128330410	128385903	.	-	.	gene_id "jcn_only_AA.1087"; transcript_id "jcn_only_AA.1087"; gene_name "CUFF.890"; flanks "128330410-,128385903^"; structure "1-,2-"; splice_chain "128383569-,128330410-";
chr6	juncbase	jcn_only_AA	128330413	128385903	.	-	.	gene_id "jcn_only_AA.1088"; transcript_id "jcn_only_AA.1088"; gene_name "CUFF.890"; flanks "128330413-,128385903^"; structure "1-,2-"; splice_chain "128383569-,128330413-";
chr6	juncbase	jcn_only_AA	128384670	128385903	.	-	.	gene_id "jcn_only_AA.1089"; transcript_id "jcn_only_AA.1089"; gene_name "CUFF.890"; flanks "128384670-,128385903^"; structure "1-,2-"; splice_chain "128384670-,128383569-";
chr6	juncbase	jcn_only_AD	31937093	31937292	.	+	.	gene_id "jcn_only_AD.1424"; transcript_id "jcn_only_AD.1424"; gene_name "CUFF.814"; flanks "31937093-,31937292^"; structure "1^,2^"; splice_chain "31937093^,31937197^";
chr6	juncbase	alternative_donor	112558117	112600323	.	+	.	gene_id "alternative_donor.1199"; transcript_id "alternative_donor.1199"; gene_name ""; flanks "112558117-,112600323^"; structure "1^,2^"; splice_chain "112558117^,112598513^";
chr6	juncbase	alternative_acceptor	114281182	114289798	.	-	.	gene_id "alternative_acceptor.819"; transcript_id "alternative_acceptor.819"; gene_name "CUFF.881"; flanks "114281182-,114289798^"; structure "1-,2-"; splice_chain "114283558-,114281182-";
chr6	juncbase	alternative_acceptor	128718833	128841404	.	-	.	gene_id "alternative_acceptor.820"; transcript_id "alternative_acceptor.820"; gene_name "CUFF.890"; flanks "128718833-,128841404^"; structure "1-,2-"; splice_chain "128730477-,128718833-";
chr6	juncbase	alternative_acceptor	128812994	128841404	.	-	.	gene_id "alternative_acceptor.821"; transcript_id "alternative_acceptor.821"; gene_name "CUFF.890"; flanks "128812994-,128841404^"; structure "1-,2-"; splice_chain "128812994-,128730477-";
chr6	juncbase	alternative_acceptor	128840286	128841404	.	-	.	gene_id "alternative_acceptor.822"; transcript_id "alternative_acceptor.822"; gene_name "CUFF.890"; flanks "128840286-,128841404^"; structure "1-,2-"; splice_chain "128840286-,128730477-";
chr6	juncbase	intron_retention	39853527	39851800	.	-	.	gene_id "intron_retention.916"; transcript_id "intron_retention.916"; gene_name "CUFF.831"; flanks "39853527-,39851800^"; structure "0,1^2-"; splice_chain ",39853527^39851800-";
chr6	juncbase	alternative_acceptor	43483928	43484465	.	-	.	gene_id "alternative_acceptor.823"; transcript_id "alternative_acceptor.823"; gene_name "CUFF.845"; flanks "43483928-,43484465^"; structure "1-,2-"; splice_chain "43483928-,43483851-";
chr6	juncbase	alternative_acceptor	43483833	43484465	.	-	.	gene_id "alternative_acceptor.824"; transcript_id "alternative_acceptor.824"; gene_name "CUFF.845"; flanks "43483833-,43484465^"; structure "1-,2-"; splice_chain "43483851-,43483833-";
chr6	juncbase	alternative_acceptor	43483925	43484465	.	-	.	gene_id "alternative_acceptor.825"; transcript_id "alternative_acceptor.825"; gene_name "CUFF.845"; flanks "43483925-,43484465^"; structure "1-,2-"; splice_chain "43483925-,43483851-";
chr6	juncbase	alternative_acceptor	43483784	43484465	.	-	.	gene_id "alternative_acceptor.826"; transcript_id "alternative_acceptor.826"; gene_name "CUFF.845"; flanks "43483784-,43484465^"; structure "1-,2-"; splice_chain "43483851-,43483784-";
chr6	juncbase	alternative_acceptor	31508311	31509727	.	-	.	gene_id "alternative_acceptor.827"; transcript_id "alternative_acceptor.827"; gene_name "CUFF.812"; flanks "31508311-,31509727^"; structure "1-,2-"; splice_chain "31508441-,31508311-";
chr6	juncbase	alternative_acceptor	5144496	5216851	.	-	.	gene_id "alternative_acceptor.828"; transcript_id "alternative_acceptor.828"; gene_name "CUFF.796"; flanks "5144496-,5216851^"; structure "1-,2-"; splice_chain "5144496-,5138973-";
chr6	juncbase	alternative_acceptor	5113651	5216851	.	-	.	gene_id "alternative_acceptor.829"; transcript_id "alternative_acceptor.829"; gene_name "CUFF.796"; flanks "5113651-,5216851^"; structure "1-,2-"; splice_chain "5138973-,5113651-";
chr6	juncbase	alternative_acceptor	5187214	5216851	.	-	.	gene_id "alternative_acceptor.830"; transcript_id "alternative_acceptor.830"; gene_name "CUFF.796"; flanks "5187214-,5216851^"; structure "1-,2-"; splice_chain "5187214-,5138973-";
chr6	juncbase	jcn_only_AD	112375364	112375538	.	+	.	gene_id "jcn_only_AD.1425"; transcript_id "jcn_only_AD.1425"; gene_name "CUFF.874"; flanks "112375364-,112375538^"; structure "1^,2^"; splice_chain "112375364^,112375373^";
chr6	juncbase	intron_retention	112375373	112375538	.	+	.	gene_id "intron_retention.917"; transcript_id "intron_retention.917"; gene_name ""; flanks "112375373-,112375538^"; structure "0,1^2-"; splice_chain ",112375373^112375538-";
chr6	juncbase	jcn_only_AD	145119126	145124172	.	+	.	gene_id "jcn_only_AD.1426"; transcript_id "jcn_only_AD.1426"; gene_name "CUFF.904"; flanks "145119126-,145124172^"; structure "1^,2^"; splice_chain "145119126^,145120609^";
chr6	juncbase	jcn_only_AA	90337415	90338831	.	+	.	gene_id "jcn_only_AA.1090"; transcript_id "jcn_only_AA.1090"; gene_name "CUFF.815,CUFF.865"; flanks "90337415-,90338831^"; structure "1-,2-"; splice_chain "90337966-,90338831-";
chr6	juncbase	cassette	133055392	133047977	.	-	.	gene_id "cassette.626"; transcript_id "cassette.626"; gene_name "CUFF.894"; flanks "133055392-,133047977^"; structure "0,1-2^"; splice_chain ",133050118-133049880^";
chr6	juncbase	cassette	133055392	133046118	.	-	.	gene_id "cassette.627"; transcript_id "cassette.627"; gene_name "CUFF.894"; flanks "133055392-,133046118^"; structure "0,1-2^"; splice_chain ",133050118-133049880^";
chr6	juncbase	cassette	133055392	133048151	.	-	.	gene_id "cassette.628"; transcript_id "cassette.628"; gene_name "CUFF.894"; flanks "133055392-,133048151^"; structure "0,1-2^"; splice_chain ",133050118-133049880^";
chr6	juncbase	cassette	90143094	90305635	.	+	.	gene_id "cassette.629"; transcript_id "cassette.629"; gene_name "CUFF.865"; flanks "90143094-,90305635^"; structure "0,1-2^"; splice_chain ",90276553-90276815^";
chr6	juncbase	alternative_donor	145119126	145124172	.	+	.	gene_id "alternative_donor.1200"; transcript_id "alternative_donor.1200"; gene_name "CUFF.904"; flanks "145119126-,145124172^"; structure "1^,2^"; splice_chain "145119126^,145120609^";
chr6	juncbase	intron_retention	348274	348769	.	+	.	gene_id "intron_retention.918"; transcript_id "intron_retention.918"; gene_name "CUFF.780"; flanks "348274-,348769^"; structure "0,1^2-"; splice_chain ",348274^348769-";
chr6	juncbase	jcn_only_AA	32130399	32133915	.	+	.	gene_id "jcn_only_AA.1091"; transcript_id "jcn_only_AA.1091"; gene_name ""; flanks "32130399-,32133915^"; structure "1-,2-"; splice_chain "32130584-,32133915-";
chr6	juncbase	jcn_only_AA	32130399	32132356	.	+	.	gene_id "jcn_only_AA.1092"; transcript_id "jcn_only_AA.1092"; gene_name ""; flanks "32130399-,32132356^"; structure "1-,2-"; splice_chain "32130584-,32132356-";
chr6	juncbase	alternative_donor	31939706	31938924	.	-	.	gene_id "alternative_donor.1201"; transcript_id "alternative_donor.1201"; gene_name ""; flanks "31939706-,31938924^"; structure "1^,2^"; splice_chain "31939706^,31939097^";
chr6	juncbase	jcn_only_AD	90218968	90276553	.	+	.	gene_id "jcn_only_AD.1427"; transcript_id "jcn_only_AD.1427"; gene_name "CUFF.865"; flanks "90218968-,90276553^"; structure "1^,2^"; splice_chain "90218677^,90218968^";
chr6	juncbase	jcn_only_AD	90272617	90276553	.	+	.	gene_id "jcn_only_AD.1428"; transcript_id "jcn_only_AD.1428"; gene_name "CUFF.865"; flanks "90272617-,90276553^"; structure "1^,2^"; splice_chain "90218677^,90272617^";
chr6	juncbase	jcn_only_AD	90272642	90276553	.	+	.	gene_id "jcn_only_AD.1429"; transcript_id "jcn_only_AD.1429"; gene_name "CUFF.865"; flanks "90272642-,90276553^"; structure "1^,2^"; splice_chain "90218677^,90272642^";
chr6	juncbase	jcn_only_AD	90193277	90276553	.	+	.	gene_id "jcn_only_AD.1430"; transcript_id "jcn_only_AD.1430"; gene_name "CUFF.865"; flanks "90193277-,90276553^"; structure "1^,2^"; splice_chain "90193277^,90218677^";
chr6	juncbase	jcn_only_AA	31938924	31939706	.	-	.	gene_id "jcn_only_AA.1093"; transcript_id "jcn_only_AA.1093"; gene_name ""; flanks "31938924-,31939706^"; structure "1-,2-"; splice_chain "31939358-,31938924-";
chr6	juncbase	jcn_only_AA	31939458	31939706	.	-	.	gene_id "jcn_only_AA.1094"; transcript_id "jcn_only_AA.1094"; gene_name ""; flanks "31939458-,31939706^"; structure "1-,2-"; splice_chain "31939458-,31939358-";
chr6	juncbase	jcn_only_AA	31939502	31939706	.	-	.	gene_id "jcn_only_AA.1095"; transcript_id "jcn_only_AA.1095"; gene_name ""; flanks "31939502-,31939706^"; structure "1-,2-"; splice_chain "31939502-,31939358-";
chr6	juncbase	alternative_acceptor	43483833	43484465	.	-	.	gene_id "alternative_acceptor.831"; transcript_id "alternative_acceptor.831"; gene_name "CUFF.845"; flanks "43483833-,43484465^"; structure "1-,2-"; splice_chain "43483928-,43483833-";
chr6	juncbase	alternative_acceptor	43483851	43484465	.	-	.	gene_id "alternative_acceptor.832"; transcript_id "alternative_acceptor.832"; gene_name "CUFF.845"; flanks "43483851-,43484465^"; structure "1-,2-"; splice_chain "43483928-,43483851-";
chr6	juncbase	alternative_acceptor	43483925	43484465	.	-	.	gene_id "alternative_acceptor.833"; transcript_id "alternative_acceptor.833"; gene_name "CUFF.845"; flanks "43483925-,43484465^"; structure "1-,2-"; splice_chain "43483928-,43483925-";
chr6	juncbase	alternative_acceptor	43483784	43484465	.	-	.	gene_id "alternative_acceptor.834"; transcript_id "alternative_acceptor.834"; gene_name "CUFF.845"; flanks "43483784-,43484465^"; structure "1-,2-"; splice_chain "43483928-,43483784-";
chr6	juncbase	jcn_only_AA	31936315	31936463	.	+	.	gene_id "jcn_only_AA.1096"; transcript_id "jcn_only_AA.1096"; gene_name "CUFF.814,CUFF.823"; flanks "31936315-,31936463^"; structure "1-,2-"; splice_chain "31936400-,31936463-";
chr6	juncbase	jcn_only_AA	128718833	128841404	.	-	.	gene_id "jcn_only_AA.1097"; transcript_id "jcn_only_AA.1097"; gene_name "CUFF.890"; flanks "128718833-,128841404^"; structure "1-,2-"; splice_chain "128840286-,128718833-";
chr6	juncbase	jcn_only_AA	128812994	128841404	.	-	.	gene_id "jcn_only_AA.1098"; transcript_id "jcn_only_AA.1098"; gene_name "CUFF.890"; flanks "128812994-,128841404^"; structure "1-,2-"; splice_chain "128840286-,128812994-";
chr6	juncbase	jcn_only_AA	128730477	128841404	.	-	.	gene_id "jcn_only_AA.1099"; transcript_id "jcn_only_AA.1099"; gene_name "CUFF.890"; flanks "128730477-,128841404^"; structure "1-,2-"; splice_chain "128840286-,128730477-";
chr6	juncbase	alternative_acceptor	43483928	43484465	.	-	.	gene_id "alternative_acceptor.835"; transcript_id "alternative_acceptor.835"; gene_name "CUFF.845"; flanks "43483928-,43484465^"; structure "1-,2-"; splice_chain "43483928-,43483833-";
chr6	juncbase	alternative_acceptor	43483851	43484465	.	-	.	gene_id "alternative_acceptor.836"; transcript_id "alternative_acceptor.836"; gene_name "CUFF.845"; flanks "43483851-,43484465^"; structure "1-,2-"; splice_chain "43483851-,43483833-";
chr6	juncbase	alternative_acceptor	43483925	43484465	.	-	.	gene_id "alternative_acceptor.837"; transcript_id "alternative_acceptor.837"; gene_name "CUFF.845"; flanks "43483925-,43484465^"; structure "1-,2-"; splice_chain "43483925-,43483833-";
chr6	juncbase	alternative_acceptor	43483784	43484465	.	-	.	gene_id "alternative_acceptor.838"; transcript_id "alternative_acceptor.838"; gene_name "CUFF.845"; flanks "43483784-,43484465^"; structure "1-,2-"; splice_chain "43483833-,43483784-";
chr6	juncbase	alternative_donor	5113305	5109725	.	-	.	gene_id "alternative_donor.1202"; transcript_id "alternative_donor.1202"; gene_name ""; flanks "5113305-,5109725^"; structure "1^,2^"; splice_chain "5260881^,5113305^";
chr6	juncbase	alternative_donor	5144372	5109725	.	-	.	gene_id "alternative_donor.1203"; transcript_id "alternative_donor.1203"; gene_name ""; flanks "5144372-,5109725^"; structure "1^,2^"; splice_chain "5260881^,5144372^";
chr6	juncbase	alternative_donor	5132952	5109725	.	-	.	gene_id "alternative_donor.1204"; transcript_id "alternative_donor.1204"; gene_name ""; flanks "5132952-,5109725^"; structure "1^,2^"; splice_chain "5260881^,5132952^";
chr6	juncbase	alternative_acceptor	3155157	3155859	.	-	.	gene_id "alternative_acceptor.839"; transcript_id "alternative_acceptor.839"; gene_name "CUFF.790"; flanks "3155157-,3155859^"; structure "1-,2-"; splice_chain "3155289-,3155157-";
chr6	juncbase	alternative_acceptor	32122960	32123545	.	+	.	gene_id "alternative_acceptor.840"; transcript_id "alternative_acceptor.840"; gene_name "CUFF.875"; flanks "32122960-,32123545^"; structure "1-,2-"; splice_chain "32123465-,32123545-";
chr6	juncbase	cassette	126317186	126319369	.	+	.	gene_id "cassette.630"; transcript_id "cassette.630"; gene_name "CUFF.886"; flanks "126317186-,126319369^"; structure "0,1-2^"; splice_chain ",126319199-126319280^";
chr6	juncbase	alternative_donor	5113305	5109725	.	-	.	gene_id "alternative_donor.1205"; transcript_id "alternative_donor.1205"; gene_name ""; flanks "5113305-,5109725^"; structure "1^,2^"; splice_chain "5144372^,5113305^";
chr6	juncbase	alternative_donor	5260881	5109725	.	-	.	gene_id "alternative_donor.1206"; transcript_id "alternative_donor.1206"; gene_name ""; flanks "5260881-,5109725^"; structure "1^,2^"; splice_chain "5260881^,5144372^";
chr6	juncbase	alternative_donor	5132952	5109725	.	-	.	gene_id "alternative_donor.1207"; transcript_id "alternative_donor.1207"; gene_name ""; flanks "5132952-,5109725^"; structure "1^,2^"; splice_chain "5144372^,5132952^";
chr6	juncbase	alternative_acceptor	128383569	128385903	.	-	.	gene_id "alternative_acceptor.841"; transcript_id "alternative_acceptor.841"; gene_name "CUFF.890"; flanks "128383569-,128385903^"; structure "1-,2-"; splice_chain "128384670-,128383569-";
chr6	juncbase	alternative_acceptor	128330410	128385903	.	-	.	gene_id "alternative_acceptor.842"; transcript_id "alternative_acceptor.842"; gene_name "CUFF.890"; flanks "128330410-,128385903^"; structure "1-,2-"; splice_chain "128384670-,128330410-";
chr6	juncbase	alternative_acceptor	128330413	128385903	.	-	.	gene_id "alternative_acceptor.843"; transcript_id "alternative_acceptor.843"; gene_name "CUFF.890"; flanks "128330413-,128385903^"; structure "1-,2-"; splice_chain "128384670-,128330413-";
chr6	juncbase	jcn_only_AD	2988265	2989762	.	+	.	gene_id "jcn_only_AD.1431"; transcript_id "jcn_only_AD.1431"; gene_name "CUFF.787"; flanks "2988265-,2989762^"; structure "1^,2^"; splice_chain "2988265^,2988943^";
chr6	juncbase	alternative_acceptor	31938924	31939706	.	-	.	gene_id "alternative_acceptor.844"; transcript_id "alternative_acceptor.844"; gene_name ""; flanks "31938924-,31939706^"; structure "1-,2-"; splice_chain "31939458-,31938924-";
chr6	juncbase	alternative_acceptor	31939502	31939706	.	-	.	gene_id "alternative_acceptor.845"; transcript_id "alternative_acceptor.845"; gene_name ""; flanks "31939502-,31939706^"; structure "1-,2-"; splice_chain "31939502-,31939458-";
chr6	juncbase	alternative_acceptor	31939358	31939706	.	-	.	gene_id "alternative_acceptor.846"; transcript_id "alternative_acceptor.846"; gene_name ""; flanks "31939358-,31939706^"; structure "1-,2-"; splice_chain "31939458-,31939358-";
chr6	juncbase	jcn_only_AD	126342411	126359851	.	+	.	gene_id "jcn_only_AD.1432"; transcript_id "jcn_only_AD.1432"; gene_name "CUFF.886"; flanks "126342411-,126359851^"; structure "1^,2^"; splice_chain "126342411^,126342426^";
chr6	juncbase	intron_retention	145157677	145160309	.	+	.	gene_id "intron_retention.919"; transcript_id "intron_retention.919"; gene_name "CUFF.904"; flanks "145157677-,145160309^"; structure "0,1^2-"; splice_chain ",145157677^145160309-";
chr6	juncbase	cassette	128326229	128320049	.	-	.	gene_id "cassette.631"; transcript_id "cassette.631"; gene_name "CUFF.890"; flanks "128326229-,128320049^"; structure "0,1-2^"; splice_chain ",128324377-128324342^";
chr6	juncbase	cassette	320364	345854	.	+	.	gene_id "cassette.632"; transcript_id "cassette.632"; gene_name "CUFF.780"; flanks "320364-,345854^"; structure "0,1-2^"; splice_chain ",335114-335163^";
chr6	juncbase	cassette	311962	345854	.	+	.	gene_id "cassette.633"; transcript_id "cassette.633"; gene_name "CUFF.780"; flanks "311962-,345854^"; structure "0,1-2^"; splice_chain ",335114-335163^";
chr6	juncbase	alternative_donor	90272617	90276553	.	+	.	gene_id "alternative_donor.1208"; transcript_id "alternative_donor.1208"; gene_name "CUFF.865"; flanks "90272617-,90276553^"; structure "1^,2^"; splice_chain "90218968^,90272617^";
chr6	juncbase	alternative_donor	90272642	90276553	.	+	.	gene_id "alternative_donor.1209"; transcript_id "alternative_donor.1209"; gene_name "CUFF.865"; flanks "90272642-,90276553^"; structure "1^,2^"; splice_chain "90218968^,90272642^";
chr6	juncbase	alternative_donor	90218677	90276553	.	+	.	gene_id "alternative_donor.1210"; transcript_id "alternative_donor.1210"; gene_name "CUFF.865"; flanks "90218677-,90276553^"; structure "1^,2^"; splice_chain "90218677^,90218968^";
chr6	juncbase	alternative_donor	90193277	90276553	.	+	.	gene_id "alternative_donor.1211"; transcript_id "alternative_donor.1211"; gene_name "CUFF.865"; flanks "90193277-,90276553^"; structure "1^,2^"; splice_chain "90193277^,90218968^";
chr6	juncbase	alternative_acceptor	112375608	112382194	.	+	.	gene_id "alternative_acceptor.847"; transcript_id "alternative_acceptor.847"; gene_name "CUFF.874"; flanks "112375608-,112382194^"; structure "1-,2-"; splice_chain "112375826-,112382194-";
chr6	juncbase	jcn_only_AA	128383569	128385903	.	-	.	gene_id "jcn_only_AA.1100"; transcript_id "jcn_only_AA.1100"; gene_name "CUFF.890"; flanks "128383569-,128385903^"; structure "1-,2-"; splice_chain "128383569-,128330413-";
chr6	juncbase	jcn_only_AA	128330410	128385903	.	-	.	gene_id "jcn_only_AA.1101"; transcript_id "jcn_only_AA.1101"; gene_name "CUFF.890"; flanks "128330410-,128385903^"; structure "1-,2-"; splice_chain "128330413-,128330410-";
chr6	juncbase	jcn_only_AA	128384670	128385903	.	-	.	gene_id "jcn_only_AA.1102"; transcript_id "jcn_only_AA.1102"; gene_name "CUFF.890"; flanks "128384670-,128385903^"; structure "1-,2-"; splice_chain "128384670-,128330413-";
chr6	juncbase	alternative_donor	112604729	112627531	.	+	.	gene_id "alternative_donor.1212"; transcript_id "alternative_donor.1212"; gene_name "CUFF.875"; flanks "112604729-,112627531^"; structure "1^,2^"; splice_chain "112604394^,112604729^";
chr6	juncbase	alternative_donor	112604369	112627531	.	+	.	gene_id "alternative_donor.1213"; transcript_id "alternative_donor.1213"; gene_name "CUFF.875"; flanks "112604369-,112627531^"; structure "1^,2^"; splice_chain "112604369^,112604394^";
chr6	juncbase	alternative_donor	112558117	112627531	.	+	.	gene_id "alternative_donor.1214"; transcript_id "alternative_donor.1214"; gene_name "CUFF.875"; flanks "112558117-,112627531^"; structure "1^,2^"; splice_chain "112558117^,112604394^";
chr6	juncbase	cassette	128718711	128563747	.	-	.	gene_id "cassette.634"; transcript_id "cassette.634"; gene_name "CUFF.890"; flanks "128718711-,128563747^"; structure "0,1-2^"; splice_chain ",128643455-128643184^";
chr6	juncbase	jcn_only_AD	112558117	112600323	.	+	.	gene_id "jcn_only_AD.1433"; transcript_id "jcn_only_AD.1433"; gene_name ""; flanks "112558117-,112600323^"; structure "1^,2^"; splice_chain "112558117^,112598513^";
chr6	juncbase	alternative_donor	112666361	112668494	.	+	.	gene_id "alternative_donor.1215"; transcript_id "alternative_donor.1215"; gene_name "CUFF.875"; flanks "112666361-,112668494^"; structure "1^,2^"; splice_chain "112558117^,112666361^";
chr6	juncbase	alternative_donor	112664980	112668494	.	+	.	gene_id "alternative_donor.1216"; transcript_id "alternative_donor.1216"; gene_name "CUFF.875"; flanks "112664980-,112668494^"; structure "1^,2^"; splice_chain "112558117^,112664980^";
chr6	juncbase	jcn_only_AD	126307768	126314903	.	+	.	gene_id "jcn_only_AD.1434"; transcript_id "jcn_only_AD.1434"; gene_name "CUFF.886"; flanks "126307768-,126314903^"; structure "1^,2^"; splice_chain "126307768^,126307919^";
chr6	juncbase	jcn_only_AD	126307836	126314903	.	+	.	gene_id "jcn_only_AD.1435"; transcript_id "jcn_only_AD.1435"; gene_name "CUFF.886"; flanks "126307836-,126314903^"; structure "1^,2^"; splice_chain "126307836^,126307919^";
chr6	juncbase	cassette	32122554	32123545	.	+	.	gene_id "cassette.635"; transcript_id "cassette.635"; gene_name "CUFF.815"; flanks "32122554-,32123545^"; structure "0,1-2^"; splice_chain ",32122807-32122960^";
chr6	juncbase	cassette	32122554	32123465	.	+	.	gene_id "cassette.636"; transcript_id "cassette.636"; gene_name "CUFF.815"; flanks "32122554-,32123465^"; structure "0,1-2^"; splice_chain ",32122807-32122960^";
chr6	juncbase	cassette	133049880	133046118	.	-	.	gene_id "cassette.637"; transcript_id "cassette.637"; gene_name "CUFF.894"; flanks "133049880-,133046118^"; structure "0,1-2^"; splice_chain ",133048151-133047861^";
chr6	juncbase	cassette	133055392	133046118	.	-	.	gene_id "cassette.638"; transcript_id "cassette.638"; gene_name "CUFF.894"; flanks "133055392-,133046118^"; structure "0,1-2^"; splice_chain ",133048151-133047861^";
chr6	juncbase	jcn_only_AA	128540241	128561180	.	-	.	gene_id "jcn_only_AA.1103"; transcript_id "jcn_only_AA.1103"; gene_name "CUFF.890"; flanks "128540241-,128561180^"; structure "1-,2-"; splice_chain "128556749-,128540241-";
chr6	juncbase	jcn_only_AA	31927177	31928818	.	+	.	gene_id "jcn_only_AA.1104"; transcript_id "jcn_only_AA.1104"; gene_name ""; flanks "31927177-,31928818^"; structure "1-,2-"; splice_chain "31927787-,31928818-";
chr6	juncbase	jcn_only_AD	111303332	111306209	.	+	.	gene_id "jcn_only_AD.1436"; transcript_id "jcn_only_AD.1436"; gene_name "CUFF.872"; flanks "111303332-,111306209^"; structure "1^,2^"; splice_chain "111303332^,111303706^";
chr6	juncbase	intron_retention	31938689	31938602	.	-	.	gene_id "intron_retention.920"; transcript_id "intron_retention.920"; gene_name "CUFF.813"; flanks "31938689-,31938602^"; structure "0,1^2-"; splice_chain ",31938689^31938602-";
chr6	juncbase	alternative_donor	112382491	112385958	.	+	.	gene_id "alternative_donor.1217"; transcript_id "alternative_donor.1217"; gene_name "CUFF.874"; flanks "112382491-,112385958^"; structure "1^,2^"; splice_chain "112382491^,112382598^";
chr6	juncbase	jcn_only_AA	43483928	43484465	.	-	.	gene_id "jcn_only_AA.1105"; transcript_id "jcn_only_AA.1105"; gene_name "CUFF.845"; flanks "43483928-,43484465^"; structure "1-,2-"; splice_chain "43483928-,43483851-";
chr6	juncbase	jcn_only_AA	43483833	43484465	.	-	.	gene_id "jcn_only_AA.1106"; transcript_id "jcn_only_AA.1106"; gene_name "CUFF.845"; flanks "43483833-,43484465^"; structure "1-,2-"; splice_chain "43483851-,43483833-";
chr6	juncbase	jcn_only_AA	43483925	43484465	.	-	.	gene_id "jcn_only_AA.1107"; transcript_id "jcn_only_AA.1107"; gene_name "CUFF.845"; flanks "43483925-,43484465^"; structure "1-,2-"; splice_chain "43483925-,43483851-";
chr6	juncbase	jcn_only_AA	43483784	43484465	.	-	.	gene_id "jcn_only_AA.1108"; transcript_id "jcn_only_AA.1108"; gene_name "CUFF.845"; flanks "43483784-,43484465^"; structure "1-,2-"; splice_chain "43483851-,43483784-";
chr6	juncbase	jcn_only_AA	133047977	133049880	.	-	.	gene_id "jcn_only_AA.1109"; transcript_id "jcn_only_AA.1109"; gene_name "CUFF.894"; flanks "133047977-,133049880^"; structure "1-,2-"; splice_chain "133048151-,133047977-";
chr6	juncbase	alternative_acceptor	126307768	126314939	.	+	.	gene_id "alternative_acceptor.848"; transcript_id "alternative_acceptor.848"; gene_name ""; flanks "126307768-,126314939^"; structure "1-,2-"; splice_chain "126314903-,126314939-";
chr6	juncbase	cassette	43483627	43481371	.	-	.	gene_id "cassette.639"; transcript_id "cassette.639"; gene_name "CUFF.845"; flanks "43483627-,43481371^"; structure "0,1-2^"; splice_chain ",43483439-43483333^";
chr6	juncbase	alternative_acceptor	112664980	112668494	.	+	.	gene_id "alternative_acceptor.849"; transcript_id "alternative_acceptor.849"; gene_name ""; flanks "112664980-,112668494^"; structure "1-,2-"; splice_chain "112666241-,112668494-";
chr6	juncbase	jcn_only_AA	128313854	128316607	.	-	.	gene_id "jcn_only_AA.1110"; transcript_id "jcn_only_AA.1110"; gene_name "CUFF.890"; flanks "128313854-,128316607^"; structure "1-,2-"; splice_chain "128316411-,128313854-";
chr6	juncbase	jcn_only_AD	128812877	128718833	.	-	.	gene_id "jcn_only_AD.1437"; transcript_id "jcn_only_AD.1437"; gene_name ""; flanks "128812877-,128718833^"; structure "1^,2^"; splice_chain "128841404^,128812877^";
chr6	juncbase	jcn_only_AD	128730439	128718833	.	-	.	gene_id "jcn_only_AD.1438"; transcript_id "jcn_only_AD.1438"; gene_name ""; flanks "128730439-,128718833^"; structure "1^,2^"; splice_chain "128841404^,128730439^";
chr6	juncbase	jcn_only_AD	112604729	112627531	.	+	.	gene_id "jcn_only_AD.1439"; transcript_id "jcn_only_AD.1439"; gene_name "CUFF.875"; flanks "112604729-,112627531^"; structure "1^,2^"; splice_chain "112604394^,112604729^";
chr6	juncbase	jcn_only_AD	112604369	112627531	.	+	.	gene_id "jcn_only_AD.1440"; transcript_id "jcn_only_AD.1440"; gene_name "CUFF.875"; flanks "112604369-,112627531^"; structure "1^,2^"; splice_chain "112604369^,112604394^";
chr6	juncbase	jcn_only_AD	112558117	112627531	.	+	.	gene_id "jcn_only_AD.1441"; transcript_id "jcn_only_AD.1441"; gene_name "CUFF.875"; flanks "112558117-,112627531^"; structure "1^,2^"; splice_chain "112558117^,112604394^";
chr6	juncbase	alternative_acceptor	43480836	43481097	.	-	.	gene_id "alternative_acceptor.850"; transcript_id "alternative_acceptor.850"; gene_name "CUFF.845"; flanks "43480836-,43481097^"; structure "1-,2-"; splice_chain "43480938-,43480836-";
chr6	juncbase	alternative_donor	28116602	28117261	.	+	.	gene_id "alternative_donor.1218"; transcript_id "alternative_donor.1218"; gene_name "CUFF.807"; flanks "28116602-,28117261^"; structure "1^,2^"; splice_chain "28116602^,28116616^";
chr6	juncbase	alternative_donor	90338942	90340152	.	+	.	gene_id "alternative_donor.1219"; transcript_id "alternative_donor.1219"; gene_name "CUFF.865"; flanks "90338942-,90340152^"; structure "1^,2^"; splice_chain "90338942^,90338957^";
chr6	juncbase	alternative_acceptor	170117996	170118884	.	-	.	gene_id "alternative_acceptor.851"; transcript_id "alternative_acceptor.851"; gene_name "CUFF.918"; flanks "170117996-,170118884^"; structure "1-,2-"; splice_chain "170118002-,170117996-";
chr6	juncbase	jcn_only_AA	5144496	5216851	.	-	.	gene_id "jcn_only_AA.1111"; transcript_id "jcn_only_AA.1111"; gene_name "CUFF.796"; flanks "5144496-,5216851^"; structure "1-,2-"; splice_chain "5144496-,5113651-";
chr6	juncbase	jcn_only_AA	5138973	5216851	.	-	.	gene_id "jcn_only_AA.1112"; transcript_id "jcn_only_AA.1112"; gene_name "CUFF.796"; flanks "5138973-,5216851^"; structure "1-,2-"; splice_chain "5138973-,5113651-";
chr6	juncbase	jcn_only_AA	5187214	5216851	.	-	.	gene_id "jcn_only_AA.1113"; transcript_id "jcn_only_AA.1113"; gene_name "CUFF.796"; flanks "5187214-,5216851^"; structure "1-,2-"; splice_chain "5187214-,5113651-";
chr6	juncbase	alternative_acceptor	116988075	116989729	.	-	.	gene_id "alternative_acceptor.852"; transcript_id "alternative_acceptor.852"; gene_name "CUFF.882"; flanks "116988075-,116989729^"; structure "1-,2-"; splice_chain "116988370-,116988075-";
chr6	juncbase	intron_retention	133044873	133044193	.	-	.	gene_id "intron_retention.921"; transcript_id "intron_retention.921"; gene_name "CUFF.894"; flanks "133044873-,133044193^"; structure "0,1^2-"; splice_chain ",133044873^133044193-";
chr6	juncbase	alternative_donor	128841404	128718833	.	-	.	gene_id "alternative_donor.1220"; transcript_id "alternative_donor.1220"; gene_name "CUFF.890"; flanks "128841404-,128718833^"; structure "1^,2^"; splice_chain "128841404^,128730439^";
chr6	juncbase	alternative_donor	128812877	128718833	.	-	.	gene_id "alternative_donor.1221"; transcript_id "alternative_donor.1221"; gene_name "CUFF.890"; flanks "128812877-,128718833^"; structure "1^,2^"; splice_chain "128812877^,128730439^";
chr6	juncbase	jcn_only_AD	90326376	90327673	.	+	.	gene_id "jcn_only_AD.1442"; transcript_id "jcn_only_AD.1442"; gene_name "CUFF.865"; flanks "90326376-,90327673^"; structure "1^,2^"; splice_chain "90326376^,90326675^";
chr6	juncbase	jcn_only_AD	32125497	32130345	.	+	.	gene_id "jcn_only_AD.1443"; transcript_id "jcn_only_AD.1443"; gene_name ""; flanks "32125497-,32130345^"; structure "1^,2^"; splice_chain "32125497^,32125701^";
chr6	juncbase	intron_retention	112375364	112375538	.	+	.	gene_id "intron_retention.922"; transcript_id "intron_retention.922"; gene_name "CUFF.874"; flanks "112375364-,112375538^"; structure "0,1^2-"; splice_chain ",112375364^112375538-";
chr6	juncbase	jcn_only_AD	128330275	128327200	.	-	.	gene_id "jcn_only_AD.1444"; transcript_id "jcn_only_AD.1444"; gene_name "CUFF.836,CUFF.890"; flanks "128330275-,128327200^"; structure "1^,2^"; splice_chain "128330275^,128329191^";
chr6	juncbase	jcn_only_AA	5144496	5216851	.	-	.	gene_id "jcn_only_AA.1114"; transcript_id "jcn_only_AA.1114"; gene_name "CUFF.796"; flanks "5144496-,5216851^"; structure "1-,2-"; splice_chain "5144496-,5138973-";
chr6	juncbase	jcn_only_AA	5113651	5216851	.	-	.	gene_id "jcn_only_AA.1115"; transcript_id "jcn_only_AA.1115"; gene_name "CUFF.796"; flanks "5113651-,5216851^"; structure "1-,2-"; splice_chain "5138973-,5113651-";
chr6	juncbase	jcn_only_AA	5187214	5216851	.	-	.	gene_id "jcn_only_AA.1116"; transcript_id "jcn_only_AA.1116"; gene_name "CUFF.796"; flanks "5187214-,5216851^"; structure "1-,2-"; splice_chain "5187214-,5138973-";
chr6	juncbase	intron_retention	133055392	133047977	.	-	.	gene_id "intron_retention.923"; transcript_id "intron_retention.923"; gene_name ""; flanks "133055392-,133047977^"; structure "0,1^2-"; splice_chain ",133055392^133047977-";
chr6	juncbase	intron_retention	112382497	112385967	.	+	.	gene_id "intron_retention.924"; transcript_id "intron_retention.924"; gene_name "CUFF.874"; flanks "112382497-,112385967^"; structure "0,1^2-"; splice_chain ",112382497^112385967-";
chr6	juncbase	intron_retention	33243434	33243574	.	+	.	gene_id "intron_retention.925"; transcript_id "intron_retention.925"; gene_name ""; flanks "33243434-,33243574^"; structure "0,1^2-"; splice_chain ",33243434^33243574-";
chr6	juncbase	cassette	128324342	128320049	.	-	.	gene_id "cassette.640"; transcript_id "cassette.640"; gene_name "CUFF.890"; flanks "128324342-,128320049^"; structure "0,1-2^"; splice_chain ",128322352-128322341^";
chr6	juncbase	alternative_donor	128316394	128313854	.	-	.	gene_id "alternative_donor.1222"; transcript_id "alternative_donor.1222"; gene_name "CUFF.890"; flanks "128316394-,128313854^"; structure "1^,2^"; splice_chain "128316592^,128316394^";
chr6	juncbase	alternative_donor	128316607	128313854	.	-	.	gene_id "alternative_donor.1223"; transcript_id "alternative_donor.1223"; gene_name "CUFF.890"; flanks "128316607-,128313854^"; structure "1^,2^"; splice_chain "128316607^,128316592^";
chr6	juncbase	jcn_only_AD	128316607	128313854	.	-	.	gene_id "jcn_only_AD.1445"; transcript_id "jcn_only_AD.1445"; gene_name "CUFF.890"; flanks "128316607-,128313854^"; structure "1^,2^"; splice_chain "128316607^,128316394^";
chr6	juncbase	jcn_only_AD	128316592	128313854	.	-	.	gene_id "jcn_only_AD.1446"; transcript_id "jcn_only_AD.1446"; gene_name "CUFF.890"; flanks "128316592-,128313854^"; structure "1^,2^"; splice_chain "128316592^,128316394^";
chr6	juncbase	alternative_donor	112558117	112604256	.	+	.	gene_id "alternative_donor.1224"; transcript_id "alternative_donor.1224"; gene_name ""; flanks "112558117-,112604256^"; structure "1^,2^"; splice_chain "112558117^,112600440^";
chr6	juncbase	cassette	90276815	90312748	.	+	.	gene_id "cassette.641"; transcript_id "cassette.641"; gene_name "CUFF.865"; flanks "90276815-,90312748^"; structure "0,1-2^"; splice_chain ",90305635-90305733^";
chr6	juncbase	cassette	28109807	28116094	.	+	.	gene_id "cassette.642"; transcript_id "cassette.642"; gene_name "CUFF.807"; flanks "28109807-,28116094^"; structure "0,1-2^"; splice_chain ",28112109-28112202^";
chr6	juncbase	jcn_only_AA	128718833	128841404	.	-	.	gene_id "jcn_only_AA.1117"; transcript_id "jcn_only_AA.1117"; gene_name "CUFF.890"; flanks "128718833-,128841404^"; structure "1-,2-"; splice_chain "128812994-,128718833-";
chr6	juncbase	jcn_only_AA	128730477	128841404	.	-	.	gene_id "jcn_only_AA.1118"; transcript_id "jcn_only_AA.1118"; gene_name "CUFF.890"; flanks "128730477-,128841404^"; structure "1-,2-"; splice_chain "128812994-,128730477-";
chr6	juncbase	jcn_only_AA	128840286	128841404	.	-	.	gene_id "jcn_only_AA.1119"; transcript_id "jcn_only_AA.1119"; gene_name "CUFF.890"; flanks "128840286-,128841404^"; structure "1-,2-"; splice_chain "128840286-,128812994-";
chr6	juncbase	intron_retention	31938370	31938155	.	-	.	gene_id "intron_retention.926"; transcript_id "intron_retention.926"; gene_name ""; flanks "31938370-,31938155^"; structure "0,1^2-"; splice_chain ",31938370^31938155-";
chr6	juncbase	alternative_donor	114292021	114289860	.	-	.	gene_id "alternative_donor.1225"; transcript_id "alternative_donor.1225"; gene_name "CUFF.800,CUFF.881"; flanks "114292021-,114289860^"; structure "1^,2^"; splice_chain "114292021^,114291644^";
chr6	juncbase	alternative_acceptor	133055522	133055619	.	-	.	gene_id "alternative_acceptor.853"; transcript_id "alternative_acceptor.853"; gene_name "CUFF.894"; flanks "133055522-,133055619^"; structure "1-,2-"; splice_chain "133055525-,133055522-";
chr6	juncbase	alternative_donor	90218968	90276553	.	+	.	gene_id "alternative_donor.1226"; transcript_id "alternative_donor.1226"; gene_name "CUFF.865"; flanks "90218968-,90276553^"; structure "1^,2^"; splice_chain "90218968^,90272642^";
chr6	juncbase	alternative_donor	90272617	90276553	.	+	.	gene_id "alternative_donor.1227"; transcript_id "alternative_donor.1227"; gene_name "CUFF.865"; flanks "90272617-,90276553^"; structure "1^,2^"; splice_chain "90272617^,90272642^";
chr6	juncbase	alternative_donor	90218677	90276553	.	+	.	gene_id "alternative_donor.1228"; transcript_id "alternative_donor.1228"; gene_name "CUFF.865"; flanks "90218677-,90276553^"; structure "1^,2^"; splice_chain "90218677^,90272642^";
chr6	juncbase	alternative_donor	90193277	90276553	.	+	.	gene_id "alternative_donor.1229"; transcript_id "alternative_donor.1229"; gene_name "CUFF.865"; flanks "90193277-,90276553^"; structure "1^,2^"; splice_chain "90193277^,90272642^";
chr6	juncbase	jcn_only_AD	32130399	32133915	.	+	.	gene_id "jcn_only_AD.1447"; transcript_id "jcn_only_AD.1447"; gene_name ""; flanks "32130399-,32133915^"; structure "1^,2^"; splice_chain "32130399^,32132434^";
chr6	juncbase	intron_retention	43483344	43481371	.	-	.	gene_id "intron_retention.927"; transcript_id "intron_retention.927"; gene_name "CUFF.845"; flanks "43483344-,43481371^"; structure "0,1^2-"; splice_chain ",43483344^43481371-";
chr6	juncbase	jcn_only_AA	32125497	32130345	.	+	.	gene_id "jcn_only_AA.1120"; transcript_id "jcn_only_AA.1120"; gene_name ""; flanks "32125497-,32130345^"; structure "1-,2-"; splice_chain "32125617-,32130345-";
chr6	juncbase	alternative_donor	111303332	111306209	.	+	.	gene_id "alternative_donor.1230"; transcript_id "alternative_donor.1230"; gene_name "CUFF.872"; flanks "111303332-,111306209^"; structure "1^,2^"; splice_chain "111303332^,111303706^";
chr6	juncbase	cassette	133055392	133050118	.	-	.	gene_id "cassette.643"; transcript_id "cassette.643"; gene_name "CUFF.894"; flanks "133055392-,133050118^"; structure "0,1-2^"; splice_chain ",133052666-133052514^";
chr6	juncbase	alternative_acceptor	31938924	31939706	.	-	.	gene_id "alternative_acceptor.854"; transcript_id "alternative_acceptor.854"; gene_name ""; flanks "31938924-,31939706^"; structure "1-,2-"; splice_chain "31939358-,31938924-";
chr6	juncbase	alternative_acceptor	31939458	31939706	.	-	.	gene_id "alternative_acceptor.855"; transcript_id "alternative_acceptor.855"; gene_name ""; flanks "31939458-,31939706^"; structure "1-,2-"; splice_chain "31939458-,31939358-";
chr6	juncbase	alternative_acceptor	31939502	31939706	.	-	.	gene_id "alternative_acceptor.856"; transcript_id "alternative_acceptor.856"; gene_name ""; flanks "31939502-,31939706^"; structure "1-,2-"; splice_chain "31939502-,31939358-";
chr6	juncbase	cassette	114292021	114281182	.	-	.	gene_id "cassette.644"; transcript_id "cassette.644"; gene_name "CUFF.881"; flanks "114292021-,114281182^"; structure "0,1-2^"; splice_chain ",114289860-114289798^";
chr6	juncbase	cassette	114291644	114281182	.	-	.	gene_id "cassette.645"; transcript_id "cassette.645"; gene_name "CUFF.881"; flanks "114291644-,114281182^"; structure "0,1-2^"; splice_chain ",114289860-114289798^";
chr6	juncbase	cassette	114292021	114283558	.	-	.	gene_id "cassette.646"; transcript_id "cassette.646"; gene_name "CUFF.881"; flanks "114292021-,114283558^"; structure "0,1-2^"; splice_chain ",114289860-114289798^";
chr6	juncbase	alternative_donor	90337415	90338831	.	+	.	gene_id "alternative_donor.1231"; transcript_id "alternative_donor.1231"; gene_name "CUFF.865"; flanks "90337415-,90338831^"; structure "1^,2^"; splice_chain "90337415^,90338060^";
chr6	juncbase	jcn_only_AD	112604394	112627531	.	+	.	gene_id "jcn_only_AD.1448"; transcript_id "jcn_only_AD.1448"; gene_name "CUFF.875"; flanks "112604394-,112627531^"; structure "1^,2^"; splice_chain "112604394^,112604729^";
chr6	juncbase	jcn_only_AD	112604369	112627531	.	+	.	gene_id "jcn_only_AD.1449"; transcript_id "jcn_only_AD.1449"; gene_name "CUFF.875"; flanks "112604369-,112627531^"; structure "1^,2^"; splice_chain "112604369^,112604729^";
chr6	juncbase	jcn_only_AD	112558117	112627531	.	+	.	gene_id "jcn_only_AD.1450"; transcript_id "jcn_only_AD.1450"; gene_name "CUFF.875"; flanks "112558117-,112627531^"; structure "1^,2^"; splice_chain "112558117^,112604729^";
chr6	juncbase	alternative_acceptor	43481371	43483333	.	-	.	gene_id "alternative_acceptor.857"; transcript_id "alternative_acceptor.857"; gene_name "CUFF.845"; flanks "43481371-,43483333^"; structure "1-,2-"; splice_chain "43483044-,43481371-";
chr6	juncbase	jcn_only_AA	31938924	31939706	.	-	.	gene_id "jcn_only_AA.1121"; transcript_id "jcn_only_AA.1121"; gene_name ""; flanks "31938924-,31939706^"; structure "1-,2-"; splice_chain "31939458-,31938924-";
chr6	juncbase	jcn_only_AA	31939502	31939706	.	-	.	gene_id "jcn_only_AA.1122"; transcript_id "jcn_only_AA.1122"; gene_name ""; flanks "31939502-,31939706^"; structure "1-,2-"; splice_chain "31939502-,31939458-";
chr6	juncbase	jcn_only_AA	31939358	31939706	.	-	.	gene_id "jcn_only_AA.1123"; transcript_id "jcn_only_AA.1123"; gene_name ""; flanks "31939358-,31939706^"; structure "1-,2-"; splice_chain "31939458-,31939358-";
chr6	juncbase	jcn_only_AD	31927177	31928818	.	+	.	gene_id "jcn_only_AD.1451"; transcript_id "jcn_only_AD.1451"; gene_name "CUFF.814"; flanks "31927177-,31928818^"; structure "1^,2^"; splice_chain "31927177^,31928517^";
chr6	juncbase	jcn_only_AA	31508311	31509727	.	-	.	gene_id "jcn_only_AA.1124"; transcript_id "jcn_only_AA.1124"; gene_name "CUFF.812"; flanks "31508311-,31509727^"; structure "1-,2-"; splice_chain "31508441-,31508311-";
chr6	juncbase	jcn_only_AA	161413115	161491640	.	+	.	gene_id "jcn_only_AA.1125"; transcript_id "jcn_only_AA.1125"; gene_name ""; flanks "161413115-,161491640^"; structure "1-,2-"; splice_chain "161455291-,161491640-";
chr6	juncbase	jcn_only_AD	5113305	5109725	.	-	.	gene_id "jcn_only_AD.1452"; transcript_id "jcn_only_AD.1452"; gene_name ""; flanks "5113305-,5109725^"; structure "1^,2^"; splice_chain "5144372^,5113305^";
chr6	juncbase	jcn_only_AD	5260881	5109725	.	-	.	gene_id "jcn_only_AD.1453"; transcript_id "jcn_only_AD.1453"; gene_name ""; flanks "5260881-,5109725^"; structure "1^,2^"; splice_chain "5260881^,5144372^";
chr6	juncbase	jcn_only_AD	5132952	5109725	.	-	.	gene_id "jcn_only_AD.1454"; transcript_id "jcn_only_AD.1454"; gene_name ""; flanks "5132952-,5109725^"; structure "1^,2^"; splice_chain "5144372^,5132952^";
chr6	juncbase	cassette	292560	311880	.	+	.	gene_id "cassette.647"; transcript_id "cassette.647"; gene_name "CUFF.780"; flanks "292560-,311880^"; structure "0,1-2^"; splice_chain ",304628-304661^";
chr6	juncbase	alternative_donor	126307768	126314903	.	+	.	gene_id "alternative_donor.1232"; transcript_id "alternative_donor.1232"; gene_name "CUFF.886"; flanks "126307768-,126314903^"; structure "1^,2^"; splice_chain "126307768^,126307919^";
chr6	juncbase	alternative_donor	126307836	126314903	.	+	.	gene_id "alternative_donor.1233"; transcript_id "alternative_donor.1233"; gene_name "CUFF.886"; flanks "126307836-,126314903^"; structure "1^,2^"; splice_chain "126307836^,126307919^";
chr6	juncbase	intron_retention	33243843	33243953	.	+	.	gene_id "intron_retention.928"; transcript_id "intron_retention.928"; gene_name "CUFF.823"; flanks "33243843-,33243953^"; structure "0,1^2-"; splice_chain ",33243843^33243953-";
chr6	juncbase	jcn_only_AD	126307919	126314903	.	+	.	gene_id "jcn_only_AD.1455"; transcript_id "jcn_only_AD.1455"; gene_name "CUFF.886"; flanks "126307919-,126314903^"; structure "1^,2^"; splice_chain "126307836^,126307919^";
chr6	juncbase	jcn_only_AD	126307768	126314903	.	+	.	gene_id "jcn_only_AD.1456"; transcript_id "jcn_only_AD.1456"; gene_name "CUFF.886"; flanks "126307768-,126314903^"; structure "1^,2^"; splice_chain "126307768^,126307836^";
chr6	juncbase	intron_retention	31937197	31937292	.	+	.	gene_id "intron_retention.929"; transcript_id "intron_retention.929"; gene_name "CUFF.814"; flanks "31937197-,31937292^"; structure "0,1^2-"; splice_chain ",31937197^31937292-";
chr6	juncbase	intron_retention	33243660	33243742	.	+	.	gene_id "intron_retention.930"; transcript_id "intron_retention.930"; gene_name "CUFF.823"; flanks "33243660-,33243742^"; structure "0,1^2-"; splice_chain ",33243660^33243742-";
chr6	juncbase	jcn_only_AA	31938529	31938689	.	-	.	gene_id "jcn_only_AA.1126"; transcript_id "jcn_only_AA.1126"; gene_name "CUFF.813"; flanks "31938529-,31938689^"; structure "1-,2-"; splice_chain "31938602-,31938529-";
chr6	juncbase	jcn_only_AA	31509925	31513886	.	-	.	gene_id "jcn_only_AA.1127"; transcript_id "jcn_only_AA.1127"; gene_name "CUFF.812"; flanks "31509925-,31513886^"; structure "1-,2-"; splice_chain "31512535-,31509925-";
chr6	juncbase	jcn_only_AA	161471011	161491640	.	+	.	gene_id "jcn_only_AA.1128"; transcript_id "jcn_only_AA.1128"; gene_name "CUFF.914"; flanks "161471011-,161491640^"; structure "1-,2-"; splice_chain "161488231-,161491640-";
chr6	juncbase	cassette	116981899	116980087	.	-	.	gene_id "cassette.648"; transcript_id "cassette.648"; gene_name "CUFF.882"; flanks "116981899-,116980087^"; structure "0,1-2^"; splice_chain ",116981532-116981396^";
chr6	juncbase	cassette	39864973	39856831	.	-	.	gene_id "cassette.649"; transcript_id "cassette.649"; gene_name "CUFF.831"; flanks "39864973-,39856831^"; structure "0,1-2^"; splice_chain ",39859155-39859082^";
chr6	juncbase	jcn_only_AA	128540241	128643184	.	-	.	gene_id "jcn_only_AA.1129"; transcript_id "jcn_only_AA.1129"; gene_name "CUFF.890"; flanks "128540241-,128643184^"; structure "1-,2-"; splice_chain "128563747-,128540241-";
chr6	juncbase	jcn_only_AD	112666361	112668494	.	+	.	gene_id "jcn_only_AD.1457"; transcript_id "jcn_only_AD.1457"; gene_name "CUFF.875"; flanks "112666361-,112668494^"; structure "1^,2^"; splice_chain "112664980^,112666361^";
chr6	juncbase	jcn_only_AD	112558117	112668494	.	+	.	gene_id "jcn_only_AD.1458"; transcript_id "jcn_only_AD.1458"; gene_name "CUFF.875"; flanks "112558117-,112668494^"; structure "1^,2^"; splice_chain "112558117^,112664980^";
chr6	juncbase	intron_retention	43481097	43480836	.	-	.	gene_id "intron_retention.931"; transcript_id "intron_retention.931"; gene_name "CUFF.845"; flanks "43481097-,43480836^"; structure "0,1^2-"; splice_chain ",43481097^43480836-";
chr6	juncbase	intron_retention	31935896	31936105	.	+	.	gene_id "intron_retention.932"; transcript_id "intron_retention.932"; gene_name ""; flanks "31935896-,31936105^"; structure "0,1^2-"; splice_chain ",31935896^31936105-";
chr5	juncbase	alternative_donor	64887699	64887329	.	-	.	gene_id "alternative_donor.1234"; transcript_id "alternative_donor.1234"; gene_name ""; flanks "64887699-,64887329^"; structure "1^,2^"; splice_chain "64887699^,64887670^";
chr5	juncbase	jcn_only_AD	54415641	54410146	.	-	.	gene_id "jcn_only_AD.1459"; transcript_id "jcn_only_AD.1459"; gene_name "CUFF.696,CUFF.710"; flanks "54415641-,54410146^"; structure "1^,2^"; splice_chain "54415641^,54415629^";
chr5	juncbase	alternative_acceptor	37309369	37310654	.	-	.	gene_id "alternative_acceptor.858"; transcript_id "alternative_acceptor.858"; gene_name "CUFF.699"; flanks "37309369-,37310654^"; structure "1-,2-"; splice_chain "37309674-,37309369-";
chr5	juncbase	alternative_donor	177636433	177637133	.	+	.	gene_id "alternative_donor.1235"; transcript_id "alternative_donor.1235"; gene_name "CUFF.775"; flanks "177636433-,177637133^"; structure "1^,2^"; splice_chain "177636433^,177636448^";
chr5	juncbase	alternative_acceptor	178046897	178050257	.	-	.	gene_id "alternative_acceptor.859"; transcript_id "alternative_acceptor.859"; gene_name "CUFF.776"; flanks "178046897-,178050257^"; structure "1-,2-"; splice_chain "178049460-,178046897-";
chr5	juncbase	alternative_acceptor	178047674	178050257	.	-	.	gene_id "alternative_acceptor.860"; transcript_id "alternative_acceptor.860"; gene_name "CUFF.776"; flanks "178047674-,178050257^"; structure "1-,2-"; splice_chain "178049460-,178047674-";
chr5	juncbase	jcn_only_AA	178047674	178050257	.	-	.	gene_id "jcn_only_AA.1130"; transcript_id "jcn_only_AA.1130"; gene_name "CUFF.776"; flanks "178047674-,178050257^"; structure "1-,2-"; splice_chain "178047674-,178046897-";
chr5	juncbase	jcn_only_AA	178049460	178050257	.	-	.	gene_id "jcn_only_AA.1131"; transcript_id "jcn_only_AA.1131"; gene_name "CUFF.776"; flanks "178049460-,178050257^"; structure "1-,2-"; splice_chain "178049460-,178046897-";
chr5	juncbase	alternative_donor	178050257	178047674	.	-	.	gene_id "alternative_donor.1236"; transcript_id "alternative_donor.1236"; gene_name "CUFF.768,CUFF.776"; flanks "178050257-,178047674^"; structure "1^,2^"; splice_chain "178050257^,178049394^";
chr5	juncbase	jcn_only_AD	149784243	149782188	.	-	.	gene_id "jcn_only_AD.1460"; transcript_id "jcn_only_AD.1460"; gene_name "CUFF.718,CUFF.772"; flanks "149784243-,149782188^"; structure "1^,2^"; splice_chain "149784243^,149782684^";
chr5	juncbase	jcn_only_AD	149785822	149782188	.	-	.	gene_id "jcn_only_AD.1461"; transcript_id "jcn_only_AD.1461"; gene_name "CUFF.718,CUFF.772"; flanks "149785822-,149782188^"; structure "1^,2^"; splice_chain "149785822^,149782684^";
chr5	juncbase	alternative_acceptor	178032383	178035377	.	-	.	gene_id "alternative_acceptor.861"; transcript_id "alternative_acceptor.861"; gene_name "CUFF.776"; flanks "178032383-,178035377^"; structure "1-,2-"; splice_chain "178032866-,178032383-";
chr5	juncbase	jcn_only_AA	149782188	149784243	.	-	.	gene_id "jcn_only_AA.1132"; transcript_id "jcn_only_AA.1132"; gene_name ""; flanks "149782188-,149784243^"; structure "1-,2-"; splice_chain "149782875-,149782188-";
chr5	juncbase	cassette	137520886	137521650	.	+	.	gene_id "cassette.650"; transcript_id "cassette.650"; gene_name "CUFF.754"; flanks "137520886-,137521650^"; structure "0,1-2^"; splice_chain ",137521201-137521399^";
chr5	juncbase	intron_retention	140027509	140028056	.	+	.	gene_id "intron_retention.933"; transcript_id "intron_retention.933"; gene_name "CUFF.759"; flanks "140027509-,140028056^"; structure "0,1^2-"; splice_chain ",140027509^140028056-";
chr5	juncbase	jcn_only_AA	40936587	40937654	.	+	.	gene_id "jcn_only_AA.1133"; transcript_id "jcn_only_AA.1133"; gene_name "CUFF.701"; flanks "40936587-,40937654^"; structure "1-,2-"; splice_chain "40937340-,40937654-";
chr5	juncbase	jcn_only_AD	127418662	127398192	.	-	.	gene_id "jcn_only_AD.1462"; transcript_id "jcn_only_AD.1462"; gene_name ""; flanks "127418662-,127398192^"; structure "1^,2^"; splice_chain "127418662^,127418427^";
chr5	juncbase	alternative_donor	36705823	36703066	.	-	.	gene_id "alternative_donor.1237"; transcript_id "alternative_donor.1237"; gene_name "CUFF.735"; flanks "36705823-,36703066^"; structure "1^,2^"; splice_chain "36705823^,36705782^";
chr5	juncbase	alternative_donor	137514891	137515349	.	+	.	gene_id "alternative_donor.1238"; transcript_id "alternative_donor.1238"; gene_name "CUFF.754"; flanks "137514891-,137515349^"; structure "1^,2^"; splice_chain "137514891^,137515022^";
chr5	juncbase	cassette	178039417	178032383	.	-	.	gene_id "cassette.651"; transcript_id "cassette.651"; gene_name "CUFF.776"; flanks "178039417-,178032383^"; structure "0,1-2^"; splice_chain ",178035459-178035377^";
chr5	juncbase	cassette	178050257	178045779	.	-	.	gene_id "cassette.652"; transcript_id "cassette.652"; gene_name "CUFF.776"; flanks "178050257-,178045779^"; structure "0,1-2^"; splice_chain ",178046897-178046839^";
chr5	juncbase	intron_retention	54456071	54456158	.	+	.	gene_id "intron_retention.934"; transcript_id "intron_retention.934"; gene_name ""; flanks "54456071-,54456158^"; structure "0,1^2-"; splice_chain ",54456071^54456158-";
chr5	juncbase	alternative_donor	140027509	140028056	.	+	.	gene_id "alternative_donor.1239"; transcript_id "alternative_donor.1239"; gene_name "CUFF.759"; flanks "140027509-,140028056^"; structure "1^,2^"; splice_chain "140027509^,140027592^";
chr5	juncbase	jcn_only_AD	149784243	149782188	.	-	.	gene_id "jcn_only_AD.1463"; transcript_id "jcn_only_AD.1463"; gene_name ""; flanks "149784243-,149782188^"; structure "1^,2^"; splice_chain "149785822^,149784243^";
chr5	juncbase	jcn_only_AD	149782684	149782188	.	-	.	gene_id "jcn_only_AD.1464"; transcript_id "jcn_only_AD.1464"; gene_name ""; flanks "149782684-,149782188^"; structure "1^,2^"; splice_chain "149785822^,149782684^";
chr5	juncbase	jcn_only_AA	82969368	83016608	.	-	.	gene_id "jcn_only_AA.1134"; transcript_id "jcn_only_AA.1134"; gene_name "CUFF.735"; flanks "82969368-,83016608^"; structure "1-,2-"; splice_chain "82971156-,82969368-";
chr5	juncbase	cassette	36153144	36177067	.	+	.	gene_id "cassette.653"; transcript_id "cassette.653"; gene_name "CUFF.693"; flanks "36153144-,36177067^"; structure "0,1-2^"; splice_chain ",36163747-36163858^";
chr5	juncbase	cassette	36153144	36166621	.	+	.	gene_id "cassette.654"; transcript_id "cassette.654"; gene_name "CUFF.693"; flanks "36153144-,36166621^"; structure "0,1-2^"; splice_chain ",36163747-36163858^";
chr5	juncbase	jcn_only_AA	56510020	56526673	.	+	.	gene_id "jcn_only_AA.1135"; transcript_id "jcn_only_AA.1135"; gene_name "CUFF.701,CUFF.717"; flanks "56510020-,56526673^"; structure "1-,2-"; splice_chain "56517203-,56526673-";
chr5	juncbase	cassette	54468766	54442684	.	-	.	gene_id "cassette.655"; transcript_id "cassette.655"; gene_name "CUFF.710"; flanks "54468766-,54442684^"; structure "0,1-2^"; splice_chain ",54468478-54468416^";
chr5	juncbase	alternative_donor	149782684	149782188	.	-	.	gene_id "alternative_donor.1240"; transcript_id "alternative_donor.1240"; gene_name "CUFF.772"; flanks "149782684-,149782188^"; structure "1^,2^"; splice_chain "149784243^,149782684^";
chr5	juncbase	alternative_donor	149785822	149782188	.	-	.	gene_id "alternative_donor.1241"; transcript_id "alternative_donor.1241"; gene_name "CUFF.772"; flanks "149785822-,149782188^"; structure "1^,2^"; splice_chain "149785822^,149784243^";
chr5	juncbase	alternative_donor	149784243	149782188	.	-	.	gene_id "alternative_donor.1242"; transcript_id "alternative_donor.1242"; gene_name "CUFF.718,CUFF.772"; flanks "149784243-,149782188^"; structure "1^,2^"; splice_chain "149784243^,149782684^";
chr5	juncbase	alternative_donor	149785822	149782188	.	-	.	gene_id "alternative_donor.1243"; transcript_id "alternative_donor.1243"; gene_name "CUFF.718,CUFF.772"; flanks "149785822-,149782188^"; structure "1^,2^"; splice_chain "149785822^,149782684^";
chr5	juncbase	jcn_only_AA	139815842	139818046	.	+	.	gene_id "jcn_only_AA.1136"; transcript_id "jcn_only_AA.1136"; gene_name "CUFF.759"; flanks "139815842-,139818046^"; structure "1-,2-"; splice_chain "139818046-,139818088-";
chr5	juncbase	jcn_only_AA	139815842	139818079	.	+	.	gene_id "jcn_only_AA.1137"; transcript_id "jcn_only_AA.1137"; gene_name "CUFF.759"; flanks "139815842-,139818079^"; structure "1-,2-"; splice_chain "139818079-,139818088-";
chr5	juncbase	jcn_only_AA	60224786	60240759	.	-	.	gene_id "jcn_only_AA.1138"; transcript_id "jcn_only_AA.1138"; gene_name "CUFF.718"; flanks "60224786-,60240759^"; structure "1-,2-"; splice_chain "60227975-,60224786-";
chr5	juncbase	cassette	54423085	54420856	.	-	.	gene_id "cassette.656"; transcript_id "cassette.656"; gene_name "CUFF.710"; flanks "54423085-,54420856^"; structure "0,1-2^"; splice_chain ",54422267-54422182^";
chr5	juncbase	cassette	54603215	54593226	.	-	.	gene_id "cassette.657"; transcript_id "cassette.657"; gene_name "CUFF.713"; flanks "54603215-,54593226^"; structure "0,1-2^"; splice_chain ",54594492-54594419^";
chr5	juncbase	alternative_acceptor	178046897	178050257	.	-	.	gene_id "alternative_acceptor.862"; transcript_id "alternative_acceptor.862"; gene_name "CUFF.776"; flanks "178046897-,178050257^"; structure "1-,2-"; splice_chain "178047674-,178046897-";
chr5	juncbase	alternative_acceptor	178049460	178050257	.	-	.	gene_id "alternative_acceptor.863"; transcript_id "alternative_acceptor.863"; gene_name "CUFF.776"; flanks "178049460-,178050257^"; structure "1-,2-"; splice_chain "178049460-,178047674-";
chr5	juncbase	jcn_only_AA	139915123	139916974	.	+	.	gene_id "jcn_only_AA.1139"; transcript_id "jcn_only_AA.1139"; gene_name "CUFF.704,CUFF.759"; flanks "139915123-,139916974^"; structure "1-,2-"; splice_chain "139916923-,139916974-";
chr5	juncbase	cassette	139886562	139889222	.	+	.	gene_id "cassette.658"; transcript_id "cassette.658"; gene_name "CUFF.759"; flanks "139886562-,139889222^"; structure "0,1-2^"; splice_chain ",139887370-139887583^";
chr5	juncbase	cassette	178050257	178045779	.	-	.	gene_id "cassette.659"; transcript_id "cassette.659"; gene_name "CUFF.776"; flanks "178050257-,178045779^"; structure "0,1-2^"; splice_chain ",178047674-178046839^";
chr5	juncbase	alternative_donor	139917819	139918504	.	+	.	gene_id "alternative_donor.1244"; transcript_id "alternative_donor.1244"; gene_name "CUFF.759"; flanks "139917819-,139918504^"; structure "1^,2^"; splice_chain "139917819^,139917846^";
chr5	juncbase	intron_retention	149782126	149781813	.	-	.	gene_id "intron_retention.935"; transcript_id "intron_retention.935"; gene_name "CUFF.772"; flanks "149782126-,149781813^"; structure "0,1^2-"; splice_chain ",149782126^149781813-";
chr5	juncbase	alternative_acceptor	139876863	139884406	.	+	.	gene_id "alternative_acceptor.864"; transcript_id "alternative_acceptor.864"; gene_name "CUFF.759"; flanks "139876863-,139884406^"; structure "1-,2-"; splice_chain "139877623-,139884406-";
chr5	juncbase	intron_retention	2747655	2746900	.	-	.	gene_id "intron_retention.936"; transcript_id "intron_retention.936"; gene_name "CUFF.688"; flanks "2747655-,2746900^"; structure "0,1^2-"; splice_chain ",2747655^2746900-";
chr5	juncbase	cassette	141035188	141034002	.	-	.	gene_id "cassette.660"; transcript_id "cassette.660"; gene_name "CUFF.764"; flanks "141035188-,141034002^"; structure "0,1-2^"; splice_chain ",141034967-141034929^";
chr5	juncbase	cassette	60214092	60199543	.	-	.	gene_id "cassette.661"; transcript_id "cassette.661"; gene_name "CUFF.718"; flanks "60214092-,60199543^"; structure "0,1-2^"; splice_chain ",60200700-60200619^";
chr5	juncbase	jcn_only_AA	178046897	178050257	.	-	.	gene_id "jcn_only_AA.1140"; transcript_id "jcn_only_AA.1140"; gene_name "CUFF.776"; flanks "178046897-,178050257^"; structure "1-,2-"; splice_chain "178047674-,178046897-";
chr5	juncbase	jcn_only_AA	178049460	178050257	.	-	.	gene_id "jcn_only_AA.1141"; transcript_id "jcn_only_AA.1141"; gene_name "CUFF.776"; flanks "178049460-,178050257^"; structure "1-,2-"; splice_chain "178049460-,178047674-";
chr5	juncbase	cassette	131658048	131662970	.	+	.	gene_id "cassette.662"; transcript_id "cassette.662"; gene_name "CUFF.747"; flanks "131658048-,131662970^"; structure "0,1-2^"; splice_chain ",131660154-131660335^";
chr5	juncbase	alternative_donor	149785822	149782875	.	-	.	gene_id "alternative_donor.1245"; transcript_id "alternative_donor.1245"; gene_name "CUFF.764"; flanks "149785822-,149782875^"; structure "1^,2^"; splice_chain "149785822^,149784243^";
chr5	juncbase	jcn_only_AD	60214092	60198335	.	-	.	gene_id "jcn_only_AD.1465"; transcript_id "jcn_only_AD.1465"; gene_name "CUFF.699,CUFF.718"; flanks "60214092-,60198335^"; structure "1^,2^"; splice_chain "60214092^,60199475^";
chr5	juncbase	jcn_only_AD	60240759	60224786	.	-	.	gene_id "jcn_only_AD.1466"; transcript_id "jcn_only_AD.1466"; gene_name "CUFF.718"; flanks "60240759-,60224786^"; structure "1^,2^"; splice_chain "60240759^,60227934^";
chr5	juncbase	cassette	127418427	127412785	.	-	.	gene_id "cassette.663"; transcript_id "cassette.663"; gene_name "CUFF.744"; flanks "127418427-,127412785^"; structure "0,1-2^"; splice_chain ",127417886-127417665^";
chr5	juncbase	cassette	127418427	127396936	.	-	.	gene_id "cassette.664"; transcript_id "cassette.664"; gene_name "CUFF.744"; flanks "127418427-,127396936^"; structure "0,1-2^"; splice_chain ",127417886-127417665^";
chr5	juncbase	jcn_only_AD	1076253	1075605	.	-	.	gene_id "jcn_only_AD.1467"; transcript_id "jcn_only_AD.1467"; gene_name "CUFF.687"; flanks "1076253-,1075605^"; structure "1^,2^"; splice_chain "1076253^,1076006^";
chr5	juncbase	jcn_only_AA	50685766	50687177	.	+	.	gene_id "jcn_only_AA.1142"; transcript_id "jcn_only_AA.1142"; gene_name "CUFF.704,CUFF.717"; flanks "50685766-,50687177^"; structure "1-,2-"; splice_chain "50687108-,50687177-";
chr5	juncbase	alternative_acceptor	139815842	139818046	.	+	.	gene_id "alternative_acceptor.865"; transcript_id "alternative_acceptor.865"; gene_name "CUFF.759"; flanks "139815842-,139818046^"; structure "1-,2-"; splice_chain "139818046-,139818079-";
chr5	juncbase	alternative_acceptor	139815842	139818088	.	+	.	gene_id "alternative_acceptor.866"; transcript_id "alternative_acceptor.866"; gene_name "CUFF.759"; flanks "139815842-,139818088^"; structure "1-,2-"; splice_chain "139818079-,139818088-";
chr5	juncbase	alternative_donor	60214092	60200700	.	-	.	gene_id "alternative_donor.1246"; transcript_id "alternative_donor.1246"; gene_name "CUFF.687,CUFF.718"; flanks "60214092-,60200700^"; structure "1^,2^"; splice_chain "60214092^,60203107^";
chr5	juncbase	jcn_only_AA	52161651	52177705	.	+	.	gene_id "jcn_only_AA.1143"; transcript_id "jcn_only_AA.1143"; gene_name "CUFF.706"; flanks "52161651-,52177705^"; structure "1-,2-"; splice_chain "52162872-,52177705-";
chr5	juncbase	intron_retention	140039780	140040343	.	+	.	gene_id "intron_retention.937"; transcript_id "intron_retention.937"; gene_name "CUFF.759"; flanks "140039780-,140040343^"; structure "0,1^2-"; splice_chain ",140039780^140040343-";
chr5	juncbase	intron_retention	139915123	139916923	.	+	.	gene_id "intron_retention.938"; transcript_id "intron_retention.938"; gene_name "CUFF.759"; flanks "139915123-,139916923^"; structure "0,1^2-"; splice_chain ",139915123^139916923-";
chr5	juncbase	jcn_only_AA	82948640	82969243	.	-	.	gene_id "jcn_only_AA.1144"; transcript_id "jcn_only_AA.1144"; gene_name "CUFF.735"; flanks "82948640-,82969243^"; structure "1-,2-"; splice_chain "82948643-,82948640-";
chr5	juncbase	alternative_acceptor	40936587	40937654	.	+	.	gene_id "alternative_acceptor.867"; transcript_id "alternative_acceptor.867"; gene_name "CUFF.701"; flanks "40936587-,40937654^"; structure "1-,2-"; splice_chain "40937340-,40937654-";
chr5	juncbase	alternative_donor	64907584	64906870	.	-	.	gene_id "alternative_donor.1247"; transcript_id "alternative_donor.1247"; gene_name "CUFF.722"; flanks "64907584-,64906870^"; structure "1^,2^"; splice_chain "64907584^,64907430^";
chr5	juncbase	jcn_only_AD	129019966	129030413	.	+	.	gene_id "jcn_only_AD.1468"; transcript_id "jcn_only_AD.1468"; gene_name "CUFF.745"; flanks "129019966-,129030413^"; structure "1^,2^"; splice_chain "129019966^,129023907^";
chr5	juncbase	jcn_only_AA	54569205	54570442	.	-	.	gene_id "jcn_only_AA.1145"; transcript_id "jcn_only_AA.1145"; gene_name "CUFF.713"; flanks "54569205-,54570442^"; structure "1-,2-"; splice_chain "54569254-,54569205-";
chr5	juncbase	intron_retention	64887670	64887329	.	-	.	gene_id "intron_retention.939"; transcript_id "intron_retention.939"; gene_name ""; flanks "64887670-,64887329^"; structure "0,1^2-"; splice_chain ",64887670^64887329-";
chr5	juncbase	jcn_only_AD	139909381	139916974	.	+	.	gene_id "jcn_only_AD.1469"; transcript_id "jcn_only_AD.1469"; gene_name "CUFF.759"; flanks "139909381-,139916974^"; structure "1^,2^"; splice_chain "139909381^,139915123^";
chr5	juncbase	jcn_only_AD	140027509	140028056	.	+	.	gene_id "jcn_only_AD.1470"; transcript_id "jcn_only_AD.1470"; gene_name "CUFF.759"; flanks "140027509-,140028056^"; structure "1^,2^"; splice_chain "140027509^,140027592^";
chr5	juncbase	jcn_only_AA	472080	472794	.	-	.	gene_id "jcn_only_AA.1146"; transcript_id "jcn_only_AA.1146"; gene_name "CUFF.683"; flanks "472080-,472794^"; structure "1-,2-"; splice_chain "472080-,471938-";
chr5	juncbase	jcn_only_AA	466641	472794	.	-	.	gene_id "jcn_only_AA.1147"; transcript_id "jcn_only_AA.1147"; gene_name "CUFF.683"; flanks "466641-,472794^"; structure "1-,2-"; splice_chain "471938-,466641-";
chr5	juncbase	jcn_only_AA	472708	472794	.	-	.	gene_id "jcn_only_AA.1148"; transcript_id "jcn_only_AA.1148"; gene_name "CUFF.683"; flanks "472708-,472794^"; structure "1-,2-"; splice_chain "472708-,471938-";
chr5	juncbase	jcn_only_AA	472080	472794	.	-	.	gene_id "jcn_only_AA.1149"; transcript_id "jcn_only_AA.1149"; gene_name "CUFF.683"; flanks "472080-,472794^"; structure "1-,2-"; splice_chain "472708-,472080-";
chr5	juncbase	jcn_only_AA	466641	472794	.	-	.	gene_id "jcn_only_AA.1150"; transcript_id "jcn_only_AA.1150"; gene_name "CUFF.683"; flanks "466641-,472794^"; structure "1-,2-"; splice_chain "472708-,466641-";
chr5	juncbase	jcn_only_AA	471938	472794	.	-	.	gene_id "jcn_only_AA.1151"; transcript_id "jcn_only_AA.1151"; gene_name "CUFF.683"; flanks "471938-,472794^"; structure "1-,2-"; splice_chain "472708-,471938-";
chr5	juncbase	jcn_only_AD	137514891	137515349	.	+	.	gene_id "jcn_only_AD.1471"; transcript_id "jcn_only_AD.1471"; gene_name "CUFF.754"; flanks "137514891-,137515349^"; structure "1^,2^"; splice_chain "137514891^,137515022^";
chr5	juncbase	jcn_only_AD	141050892	141050195	.	-	.	gene_id "jcn_only_AD.1472"; transcript_id "jcn_only_AD.1472"; gene_name "CUFF.764"; flanks "141050892-,141050195^"; structure "1^,2^"; splice_chain "141050892^,141050832^";
chr5	juncbase	jcn_only_AD	36705823	36703066	.	-	.	gene_id "jcn_only_AD.1473"; transcript_id "jcn_only_AD.1473"; gene_name "CUFF.735"; flanks "36705823-,36703066^"; structure "1^,2^"; splice_chain "36705823^,36705782^";
chr5	juncbase	intron_retention	54456224	54456880	.	+	.	gene_id "intron_retention.940"; transcript_id "intron_retention.940"; gene_name ""; flanks "54456224-,54456880^"; structure "0,1^2-"; splice_chain ",54456224^54456880-";
chr5	juncbase	jcn_only_AA	145651237	145694459	.	+	.	gene_id "jcn_only_AA.1152"; transcript_id "jcn_only_AA.1152"; gene_name "CUFF.767"; flanks "145651237-,145694459^"; structure "1-,2-"; splice_chain "145664185-,145694459-";
chr5	juncbase	alternative_donor	145616995	145634506	.	+	.	gene_id "alternative_donor.1248"; transcript_id "alternative_donor.1248"; gene_name "CUFF.767"; flanks "145616995-,145634506^"; structure "1^,2^"; splice_chain "145616995^,145631438^";
chr5	juncbase	intron_retention	139865317	139866591	.	+	.	gene_id "intron_retention.941"; transcript_id "intron_retention.941"; gene_name ""; flanks "139865317-,139866591^"; structure "0,1^2-"; splice_chain ",139865317^139866591-";
chr5	juncbase	intron_retention	140706204	140707337	.	+	.	gene_id "intron_retention.942"; transcript_id "intron_retention.942"; gene_name "CUFF.762"; flanks "140706204-,140707337^"; structure "0,1^2-"; splice_chain ",140706204^140707337-";
chr5	juncbase	alternative_donor	54579031	54577343	.	-	.	gene_id "alternative_donor.1249"; transcript_id "alternative_donor.1249"; gene_name "CUFF.713,CUFF.776"; flanks "54579031-,54577343^"; structure "1^,2^"; splice_chain "54579031^,54578944^";
chr5	juncbase	intron_retention	64887699	64887329	.	-	.	gene_id "intron_retention.943"; transcript_id "intron_retention.943"; gene_name ""; flanks "64887699-,64887329^"; structure "0,1^2-"; splice_chain ",64887699^64887329-";
chr5	juncbase	alternative_donor	141050892	141050195	.	-	.	gene_id "alternative_donor.1250"; transcript_id "alternative_donor.1250"; gene_name "CUFF.764"; flanks "141050892-,141050195^"; structure "1^,2^"; splice_chain "141050892^,141050832^";
chr5	juncbase	cassette	178045557	178043949	.	-	.	gene_id "cassette.665"; transcript_id "cassette.665"; gene_name "CUFF.776"; flanks "178045557-,178043949^"; structure "0,1-2^"; splice_chain ",178044435-178044345^";
chr5	juncbase	alternative_acceptor	56543042	56545281	.	+	.	gene_id "alternative_acceptor.868"; transcript_id "alternative_acceptor.868"; gene_name "CUFF.740"; flanks "56543042-,56545281^"; structure "1-,2-"; splice_chain "56545236-,56545281-";
chr5	juncbase	alternative_donor	149784243	149782188	.	-	.	gene_id "alternative_donor.1251"; transcript_id "alternative_donor.1251"; gene_name ""; flanks "149784243-,149782188^"; structure "1^,2^"; splice_chain "149785822^,149784243^";
chr5	juncbase	alternative_donor	149782684	149782188	.	-	.	gene_id "alternative_donor.1252"; transcript_id "alternative_donor.1252"; gene_name ""; flanks "149782684-,149782188^"; structure "1^,2^"; splice_chain "149785822^,149782684^";
chr5	juncbase	intron_retention	178032304	178030935	.	-	.	gene_id "intron_retention.944"; transcript_id "intron_retention.944"; gene_name "CUFF.776"; flanks "178032304-,178030935^"; structure "0,1^2-"; splice_chain ",178032304^178030935-";
chr5	juncbase	intron_retention	134181902	134182353	.	+	.	gene_id "intron_retention.945"; transcript_id "intron_retention.945"; gene_name ""; flanks "134181902-,134182353^"; structure "0,1^2-"; splice_chain ",134181902^134182353-";
chr5	juncbase	alternative_acceptor	127398192	127418427	.	-	.	gene_id "alternative_acceptor.869"; transcript_id "alternative_acceptor.869"; gene_name "CUFF.744"; flanks "127398192-,127418427^"; structure "1-,2-"; splice_chain "127417886-,127398192-";
chr5	juncbase	alternative_acceptor	127417883	127418427	.	-	.	gene_id "alternative_acceptor.870"; transcript_id "alternative_acceptor.870"; gene_name "CUFF.744"; flanks "127417883-,127418427^"; structure "1-,2-"; splice_chain "127417886-,127417883-";
chr5	juncbase	alternative_acceptor	139865317	139866591	.	+	.	gene_id "alternative_acceptor.871"; transcript_id "alternative_acceptor.871"; gene_name ""; flanks "139865317-,139866591^"; structure "1-,2-"; splice_chain "139866543-,139866591-";
chr5	juncbase	alternative_acceptor	82969368	83016608	.	-	.	gene_id "alternative_acceptor.872"; transcript_id "alternative_acceptor.872"; gene_name "CUFF.735"; flanks "82969368-,83016608^"; structure "1-,2-"; splice_chain "82971156-,82969368-";
chr5	juncbase	alternative_donor	44809665	44811111	.	+	.	gene_id "alternative_donor.1253"; transcript_id "alternative_donor.1253"; gene_name "CUFF.702"; flanks "44809665-,44811111^"; structure "1^,2^"; splice_chain "44809665^,44810094^";
chr5	juncbase	cassette	56531859	56542127	.	+	.	gene_id "cassette.666"; transcript_id "cassette.666"; gene_name "CUFF.717"; flanks "56531859-,56542127^"; structure "0,1-2^"; splice_chain ",56532940-56532999^";
chr5	juncbase	jcn_only_AD	44809665	44811111	.	+	.	gene_id "jcn_only_AD.1474"; transcript_id "jcn_only_AD.1474"; gene_name "CUFF.702"; flanks "44809665-,44811111^"; structure "1^,2^"; splice_chain "44809665^,44810094^";
chr5	juncbase	jcn_only_AD	54579031	54577343	.	-	.	gene_id "jcn_only_AD.1475"; transcript_id "jcn_only_AD.1475"; gene_name "CUFF.713,CUFF.776"; flanks "54579031-,54577343^"; structure "1^,2^"; splice_chain "54579031^,54578944^";
chr5	juncbase	intron_retention	178045557	178044435	.	-	.	gene_id "intron_retention.946"; transcript_id "intron_retention.946"; gene_name "CUFF.776"; flanks "178045557-,178044435^"; structure "0,1^2-"; splice_chain ",178045557^178044435-";
chr5	juncbase	intron_retention	56532999	56542127	.	+	.	gene_id "intron_retention.947"; transcript_id "intron_retention.947"; gene_name "CUFF.717"; flanks "56532999-,56542127^"; structure "0,1^2-"; splice_chain ",56532999^56542127-";
chr5	juncbase	jcn_only_AA	56543042	56545281	.	+	.	gene_id "jcn_only_AA.1153"; transcript_id "jcn_only_AA.1153"; gene_name "CUFF.740"; flanks "56543042-,56545281^"; structure "1-,2-"; splice_chain "56545236-,56545281-";
chr5	juncbase	intron_retention	141052968	141052700	.	-	.	gene_id "intron_retention.948"; transcript_id "intron_retention.948"; gene_name "CUFF.764"; flanks "141052968-,141052700^"; structure "0,1^2-"; splice_chain ",141052968^141052700-";
chr5	juncbase	jcn_only_AA	54456224	54456880	.	+	.	gene_id "jcn_only_AA.1154"; transcript_id "jcn_only_AA.1154"; gene_name "CUFF.712"; flanks "54456224-,54456880^"; structure "1-,2-"; splice_chain "54456822-,54456880-";
chr5	juncbase	alternative_acceptor	39521729	39524365	.	+	.	gene_id "alternative_acceptor.873"; transcript_id "alternative_acceptor.873"; gene_name ""; flanks "39521729-,39524365^"; structure "1-,2-"; splice_chain "39524353-,39524365-";
chr5	juncbase	intron_retention	54460007	54460428	.	+	.	gene_id "intron_retention.949"; transcript_id "intron_retention.949"; gene_name ""; flanks "54460007-,54460428^"; structure "0,1^2-"; splice_chain ",54460007^54460428-";
chr5	juncbase	jcn_only_AD	178050257	178047674	.	-	.	gene_id "jcn_only_AD.1476"; transcript_id "jcn_only_AD.1476"; gene_name "CUFF.768,CUFF.776"; flanks "178050257-,178047674^"; structure "1^,2^"; splice_chain "178050257^,178049394^";
chr5	juncbase	jcn_only_AA	178032383	178035377	.	-	.	gene_id "jcn_only_AA.1155"; transcript_id "jcn_only_AA.1155"; gene_name "CUFF.776"; flanks "178032383-,178035377^"; structure "1-,2-"; splice_chain "178032866-,178032383-";
chr5	juncbase	intron_retention	140041798	140041887	.	+	.	gene_id "intron_retention.950"; transcript_id "intron_retention.950"; gene_name "CUFF.759"; flanks "140041798-,140041887^"; structure "0,1^2-"; splice_chain ",140041798^140041887-";
chr5	juncbase	jcn_only_AA	139815842	139818046	.	+	.	gene_id "jcn_only_AA.1156"; transcript_id "jcn_only_AA.1156"; gene_name "CUFF.759"; flanks "139815842-,139818046^"; structure "1-,2-"; splice_chain "139818046-,139818079-";
chr5	juncbase	jcn_only_AA	139815842	139818088	.	+	.	gene_id "jcn_only_AA.1157"; transcript_id "jcn_only_AA.1157"; gene_name "CUFF.759"; flanks "139815842-,139818088^"; structure "1-,2-"; splice_chain "139818079-,139818088-";
chr5	juncbase	alternative_donor	60240759	60224786	.	-	.	gene_id "alternative_donor.1254"; transcript_id "alternative_donor.1254"; gene_name "CUFF.718"; flanks "60240759-,60224786^"; structure "1^,2^"; splice_chain "60240759^,60227934^";
chr5	juncbase	alternative_acceptor	82948640	82969243	.	-	.	gene_id "alternative_acceptor.874"; transcript_id "alternative_acceptor.874"; gene_name "CUFF.735"; flanks "82948640-,82969243^"; structure "1-,2-"; splice_chain "82948643-,82948640-";
chr5	juncbase	jcn_only_AD	64887699	64887329	.	-	.	gene_id "jcn_only_AD.1477"; transcript_id "jcn_only_AD.1477"; gene_name ""; flanks "64887699-,64887329^"; structure "1^,2^"; splice_chain "64887699^,64887670^";
chr5	juncbase	cassette	139866645	139884406	.	+	.	gene_id "cassette.667"; transcript_id "cassette.667"; gene_name "CUFF.759"; flanks "139866645-,139884406^"; structure "0,1-2^"; splice_chain ",139876105-139876863^";
chr5	juncbase	jcn_only_AD	139917819	139918504	.	+	.	gene_id "jcn_only_AD.1478"; transcript_id "jcn_only_AD.1478"; gene_name "CUFF.759"; flanks "139917819-,139918504^"; structure "1^,2^"; splice_chain "139917819^,139917846^";
chr5	juncbase	jcn_only_AA	178046897	178050257	.	-	.	gene_id "jcn_only_AA.1158"; transcript_id "jcn_only_AA.1158"; gene_name "CUFF.776"; flanks "178046897-,178050257^"; structure "1-,2-"; splice_chain "178049460-,178046897-";
chr5	juncbase	jcn_only_AA	178047674	178050257	.	-	.	gene_id "jcn_only_AA.1159"; transcript_id "jcn_only_AA.1159"; gene_name "CUFF.776"; flanks "178047674-,178050257^"; structure "1-,2-"; splice_chain "178049460-,178047674-";
chr5	juncbase	jcn_only_AD	127359827	127338514	.	-	.	gene_id "jcn_only_AD.1479"; transcript_id "jcn_only_AD.1479"; gene_name "CUFF.774"; flanks "127359827-,127338514^"; structure "1^,2^"; splice_chain "127359827^,127339336^";
chr5	juncbase	alternative_acceptor	56510020	56526673	.	+	.	gene_id "alternative_acceptor.875"; transcript_id "alternative_acceptor.875"; gene_name "CUFF.701,CUFF.717"; flanks "56510020-,56526673^"; structure "1-,2-"; splice_chain "56517203-,56526673-";
chr5	juncbase	jcn_only_AA	139815842	139818079	.	+	.	gene_id "jcn_only_AA.1160"; transcript_id "jcn_only_AA.1160"; gene_name ""; flanks "139815842-,139818079^"; structure "1-,2-"; splice_chain "139818046-,139818079-";
chr5	juncbase	jcn_only_AA	139815842	139818088	.	+	.	gene_id "jcn_only_AA.1161"; transcript_id "jcn_only_AA.1161"; gene_name ""; flanks "139815842-,139818088^"; structure "1-,2-"; splice_chain "139818046-,139818088-";
chr5	juncbase	cassette	141044489	141041356	.	-	.	gene_id "cassette.668"; transcript_id "cassette.668"; gene_name "CUFF.764"; flanks "141044489-,141041356^"; structure "0,1-2^"; splice_chain ",141041822-141041610^";
chr5	juncbase	alternative_donor	1076253	1075605	.	-	.	gene_id "alternative_donor.1255"; transcript_id "alternative_donor.1255"; gene_name "CUFF.687"; flanks "1076253-,1075605^"; structure "1^,2^"; splice_chain "1076253^,1076006^";
chr5	juncbase	cassette	127412639	127302620	.	-	.	gene_id "cassette.669"; transcript_id "cassette.669"; gene_name "CUFF.744"; flanks "127412639-,127302620^"; structure "0,1-2^"; splice_chain ",127396936-127396836^";
chr5	juncbase	alternative_acceptor	127398192	127418427	.	-	.	gene_id "alternative_acceptor.876"; transcript_id "alternative_acceptor.876"; gene_name "CUFF.744"; flanks "127398192-,127418427^"; structure "1-,2-"; splice_chain "127417883-,127398192-";
chr5	juncbase	alternative_acceptor	127417886	127418427	.	-	.	gene_id "alternative_acceptor.877"; transcript_id "alternative_acceptor.877"; gene_name "CUFF.744"; flanks "127417886-,127418427^"; structure "1-,2-"; splice_chain "127417886-,127417883-";
chr5	juncbase	jcn_only_AA	39521729	39524365	.	+	.	gene_id "jcn_only_AA.1162"; transcript_id "jcn_only_AA.1162"; gene_name ""; flanks "39521729-,39524365^"; structure "1-,2-"; splice_chain "39524353-,39524365-";
chr5	juncbase	intron_retention	134191017	134193047	.	+	.	gene_id "intron_retention.951"; transcript_id "intron_retention.951"; gene_name ""; flanks "134191017-,134193047^"; structure "0,1^2-"; splice_chain ",134191017^134193047-";
chr5	juncbase	cassette	127417665	127396936	.	-	.	gene_id "cassette.670"; transcript_id "cassette.670"; gene_name "CUFF.744"; flanks "127417665-,127396936^"; structure "0,1-2^"; splice_chain ",127412785-127412639^";
chr5	juncbase	cassette	127418427	127396936	.	-	.	gene_id "cassette.671"; transcript_id "cassette.671"; gene_name "CUFF.744"; flanks "127418427-,127396936^"; structure "0,1-2^"; splice_chain ",127412785-127412639^";
chr5	juncbase	jcn_only_AA	121358102	121411010	.	+	.	gene_id "jcn_only_AA.1163"; transcript_id "jcn_only_AA.1163"; gene_name ""; flanks "121358102-,121411010^"; structure "1-,2-"; splice_chain "121362637-,121411010-";
chr5	juncbase	alternative_acceptor	139815842	139818046	.	+	.	gene_id "alternative_acceptor.878"; transcript_id "alternative_acceptor.878"; gene_name "CUFF.759"; flanks "139815842-,139818046^"; structure "1-,2-"; splice_chain "139818046-,139818088-";
chr5	juncbase	alternative_acceptor	139815842	139818079	.	+	.	gene_id "alternative_acceptor.879"; transcript_id "alternative_acceptor.879"; gene_name "CUFF.759"; flanks "139815842-,139818079^"; structure "1-,2-"; splice_chain "139818079-,139818088-";
chr5	juncbase	intron_retention	178044345	178043949	.	-	.	gene_id "intron_retention.952"; transcript_id "intron_retention.952"; gene_name ""; flanks "178044345-,178043949^"; structure "0,1^2-"; splice_chain ",178044345^178043949-";
chr5	juncbase	intron_retention	178050257	178046897	.	-	.	gene_id "intron_retention.953"; transcript_id "intron_retention.953"; gene_name "CUFF.776"; flanks "178050257-,178046897^"; structure "0,1^2-"; splice_chain ",178050257^178046897-";
chr5	juncbase	alternative_acceptor	54569205	54570442	.	-	.	gene_id "alternative_acceptor.880"; transcript_id "alternative_acceptor.880"; gene_name "CUFF.713"; flanks "54569205-,54570442^"; structure "1-,2-"; splice_chain "54569254-,54569205-";
chr5	juncbase	jcn_only_AA	466641	472794	.	-	.	gene_id "jcn_only_AA.1164"; transcript_id "jcn_only_AA.1164"; gene_name "CUFF.683"; flanks "466641-,472794^"; structure "1-,2-"; splice_chain "472080-,466641-";
chr5	juncbase	jcn_only_AA	471938	472794	.	-	.	gene_id "jcn_only_AA.1165"; transcript_id "jcn_only_AA.1165"; gene_name "CUFF.683"; flanks "471938-,472794^"; structure "1-,2-"; splice_chain "472080-,471938-";
chr5	juncbase	jcn_only_AA	472708	472794	.	-	.	gene_id "jcn_only_AA.1166"; transcript_id "jcn_only_AA.1166"; gene_name "CUFF.683"; flanks "472708-,472794^"; structure "1-,2-"; splice_chain "472708-,472080-";
chr5	juncbase	jcn_only_AA	139918668	139921757	.	+	.	gene_id "jcn_only_AA.1167"; transcript_id "jcn_only_AA.1167"; gene_name ""; flanks "139918668-,139921757^"; structure "1-,2-"; splice_chain "139918944-,139921757-";
chr5	juncbase	intron_retention	140040400	140041205	.	+	.	gene_id "intron_retention.954"; transcript_id "intron_retention.954"; gene_name ""; flanks "140040400-,140041205^"; structure "0,1^2-"; splice_chain ",140040400^140041205-";
chr5	juncbase	intron_retention	140027598	140028061	.	+	.	gene_id "intron_retention.955"; transcript_id "intron_retention.955"; gene_name ""; flanks "140027598-,140028061^"; structure "0,1^2-"; splice_chain ",140027598^140028061-";
chr5	juncbase	jcn_only_AA	127398192	127418427	.	-	.	gene_id "jcn_only_AA.1168"; transcript_id "jcn_only_AA.1168"; gene_name "CUFF.744"; flanks "127398192-,127418427^"; structure "1-,2-"; splice_chain "127417883-,127398192-";
chr5	juncbase	jcn_only_AA	127417886	127418427	.	-	.	gene_id "jcn_only_AA.1169"; transcript_id "jcn_only_AA.1169"; gene_name "CUFF.744"; flanks "127417886-,127418427^"; structure "1-,2-"; splice_chain "127417886-,127417883-";
chr5	juncbase	intron_retention	134190852	134193047	.	+	.	gene_id "intron_retention.956"; transcript_id "intron_retention.956"; gene_name "CUFF.748"; flanks "134190852-,134193047^"; structure "0,1^2-"; splice_chain ",134190852^134193047-";
chr5	juncbase	alternative_acceptor	140031391	140031673	.	+	.	gene_id "alternative_acceptor.881"; transcript_id "alternative_acceptor.881"; gene_name "CUFF.759"; flanks "140031391-,140031673^"; structure "1-,2-"; splice_chain "140031652-,140031673-";
chr5	juncbase	alternative_donor	37370923	37364486	.	-	.	gene_id "alternative_donor.1256"; transcript_id "alternative_donor.1256"; gene_name "CUFF.699,CUFF.722"; flanks "37370923-,37364486^"; structure "1^,2^"; splice_chain "37370923^,37370768^";
chr5	juncbase	cassette	54456224	54459883	.	+	.	gene_id "cassette.672"; transcript_id "cassette.672"; gene_name "CUFF.712"; flanks "54456224-,54459883^"; structure "0,1-2^"; splice_chain ",54456880-54457083^";
chr5	juncbase	jcn_only_AD	128862149	128863441	.	+	.	gene_id "jcn_only_AD.1480"; transcript_id "jcn_only_AD.1480"; gene_name "CUFF.745"; flanks "128862149-,128863441^"; structure "1^,2^"; splice_chain "128862149^,128862208^";
chr5	juncbase	alternative_acceptor	149782188	149784243	.	-	.	gene_id "alternative_acceptor.882"; transcript_id "alternative_acceptor.882"; gene_name ""; flanks "149782188-,149784243^"; structure "1-,2-"; splice_chain "149782875-,149782188-";
chr5	juncbase	alternative_donor	54415641	54410146	.	-	.	gene_id "alternative_donor.1257"; transcript_id "alternative_donor.1257"; gene_name "CUFF.696,CUFF.710"; flanks "54415641-,54410146^"; structure "1^,2^"; splice_chain "54415641^,54415629^";
chr5	juncbase	alternative_acceptor	54456224	54456880	.	+	.	gene_id "alternative_acceptor.883"; transcript_id "alternative_acceptor.883"; gene_name "CUFF.712"; flanks "54456224-,54456880^"; structure "1-,2-"; splice_chain "54456822-,54456880-";
chr5	juncbase	cassette	149786715	149785884	.	-	.	gene_id "cassette.673"; transcript_id "cassette.673"; gene_name "CUFF.772"; flanks "149786715-,149785884^"; structure "0,1-2^"; splice_chain ",149786523-149786444^";
chr5	juncbase	intron_retention	178030845	178030758	.	-	.	gene_id "intron_retention.957"; transcript_id "intron_retention.957"; gene_name "CUFF.776"; flanks "178030845-,178030758^"; structure "0,1^2-"; splice_chain ",178030845^178030758-";
chr5	juncbase	intron_retention	137514891	137515349	.	+	.	gene_id "intron_retention.958"; transcript_id "intron_retention.958"; gene_name "CUFF.754"; flanks "137514891-,137515349^"; structure "0,1^2-"; splice_chain ",137514891^137515349-";
chr5	juncbase	alternative_acceptor	472080	472794	.	-	.	gene_id "alternative_acceptor.884"; transcript_id "alternative_acceptor.884"; gene_name "CUFF.683"; flanks "472080-,472794^"; structure "1-,2-"; splice_chain "472708-,472080-";
chr5	juncbase	alternative_acceptor	466641	472794	.	-	.	gene_id "alternative_acceptor.885"; transcript_id "alternative_acceptor.885"; gene_name "CUFF.683"; flanks "466641-,472794^"; structure "1-,2-"; splice_chain "472708-,466641-";
chr5	juncbase	alternative_acceptor	471938	472794	.	-	.	gene_id "alternative_acceptor.886"; transcript_id "alternative_acceptor.886"; gene_name "CUFF.683"; flanks "471938-,472794^"; structure "1-,2-"; splice_chain "472708-,471938-";
chr5	juncbase	cassette	177636433	177637554	.	+	.	gene_id "cassette.674"; transcript_id "cassette.674"; gene_name "CUFF.775"; flanks "177636433-,177637554^"; structure "0,1-2^"; splice_chain ",177637133-177637273^";
chr5	juncbase	cassette	177636448	177637554	.	+	.	gene_id "cassette.675"; transcript_id "cassette.675"; gene_name "CUFF.775"; flanks "177636448-,177637554^"; structure "0,1-2^"; splice_chain ",177637133-177637273^";
chr5	juncbase	alternative_acceptor	60224786	60240759	.	-	.	gene_id "alternative_acceptor.887"; transcript_id "alternative_acceptor.887"; gene_name "CUFF.718"; flanks "60224786-,60240759^"; structure "1-,2-"; splice_chain "60227975-,60224786-";
chr5	juncbase	jcn_only_AD	149782684	149782188	.	-	.	gene_id "jcn_only_AD.1481"; transcript_id "jcn_only_AD.1481"; gene_name "CUFF.772"; flanks "149782684-,149782188^"; structure "1^,2^"; splice_chain "149784243^,149782684^";
chr5	juncbase	jcn_only_AD	149785822	149782188	.	-	.	gene_id "jcn_only_AD.1482"; transcript_id "jcn_only_AD.1482"; gene_name "CUFF.772"; flanks "149785822-,149782188^"; structure "1^,2^"; splice_chain "149785822^,149784243^";
chr5	juncbase	jcn_only_AA	162516352	162852809	.	-	.	gene_id "jcn_only_AA.1170"; transcript_id "jcn_only_AA.1170"; gene_name "CUFF.774"; flanks "162516352-,162852809^"; structure "1-,2-"; splice_chain "162683993-,162516352-";
chr5	juncbase	jcn_only_AA	60186913	60194103	.	-	.	gene_id "jcn_only_AA.1171"; transcript_id "jcn_only_AA.1171"; gene_name "CUFF.718"; flanks "60186913-,60194103^"; structure "1-,2-"; splice_chain "60189470-,60186913-";
chr5	juncbase	intron_retention	139865317	139866543	.	+	.	gene_id "intron_retention.959"; transcript_id "intron_retention.959"; gene_name ""; flanks "139865317-,139866543^"; structure "0,1^2-"; splice_chain ",139865317^139866543-";
chr5	juncbase	alternative_acceptor	466641	472794	.	-	.	gene_id "alternative_acceptor.888"; transcript_id "alternative_acceptor.888"; gene_name "CUFF.683"; flanks "466641-,472794^"; structure "1-,2-"; splice_chain "472080-,466641-";
chr5	juncbase	alternative_acceptor	471938	472794	.	-	.	gene_id "alternative_acceptor.889"; transcript_id "alternative_acceptor.889"; gene_name "CUFF.683"; flanks "471938-,472794^"; structure "1-,2-"; splice_chain "472080-,471938-";
chr5	juncbase	alternative_acceptor	472708	472794	.	-	.	gene_id "alternative_acceptor.890"; transcript_id "alternative_acceptor.890"; gene_name "CUFF.683"; flanks "472708-,472794^"; structure "1-,2-"; splice_chain "472708-,472080-";
chr5	juncbase	intron_retention	139915123	139916974	.	+	.	gene_id "intron_retention.960"; transcript_id "intron_retention.960"; gene_name "CUFF.759"; flanks "139915123-,139916974^"; structure "0,1^2-"; splice_chain ",139915123^139916974-";
chr5	juncbase	intron_retention	137515022	137515349	.	+	.	gene_id "intron_retention.961"; transcript_id "intron_retention.961"; gene_name "CUFF.754"; flanks "137515022-,137515349^"; structure "0,1^2-"; splice_chain ",137515022^137515349-";
chr5	juncbase	alternative_donor	127418662	127398192	.	-	.	gene_id "alternative_donor.1258"; transcript_id "alternative_donor.1258"; gene_name ""; flanks "127418662-,127398192^"; structure "1^,2^"; splice_chain "127418662^,127418427^";
chr5	juncbase	cassette	37314300	37309369	.	-	.	gene_id "cassette.676"; transcript_id "cassette.676"; gene_name "CUFF.699"; flanks "37314300-,37309369^"; structure "0,1-2^"; splice_chain ",37310845-37310654^";
chr5	juncbase	cassette	36166764	36170446	.	+	.	gene_id "cassette.677"; transcript_id "cassette.677"; gene_name "CUFF.693"; flanks "36166764-,36170446^"; structure "0,1-2^"; splice_chain ",36168415-36168549^";
chr5	juncbase	jcn_only_AA	127417883	127418427	.	-	.	gene_id "jcn_only_AA.1172"; transcript_id "jcn_only_AA.1172"; gene_name "CUFF.744"; flanks "127417883-,127418427^"; structure "1-,2-"; splice_chain "127417883-,127398192-";
chr5	juncbase	jcn_only_AA	127417886	127418427	.	-	.	gene_id "jcn_only_AA.1173"; transcript_id "jcn_only_AA.1173"; gene_name "CUFF.744"; flanks "127417886-,127418427^"; structure "1-,2-"; splice_chain "127417886-,127398192-";
chr5	juncbase	jcn_only_AA	139865317	139866591	.	+	.	gene_id "jcn_only_AA.1174"; transcript_id "jcn_only_AA.1174"; gene_name ""; flanks "139865317-,139866591^"; structure "1-,2-"; splice_chain "139866543-,139866591-";
chr5	juncbase	intron_retention	178050257	178049460	.	-	.	gene_id "intron_retention.962"; transcript_id "intron_retention.962"; gene_name ""; flanks "178050257-,178049460^"; structure "0,1^2-"; splice_chain ",178050257^178049460-";
chr5	juncbase	alternative_acceptor	121358102	121411010	.	+	.	gene_id "alternative_acceptor.891"; transcript_id "alternative_acceptor.891"; gene_name ""; flanks "121358102-,121411010^"; structure "1-,2-"; splice_chain "121362637-,121411010-";
chr5	juncbase	alternative_acceptor	52177853	52183647	.	+	.	gene_id "alternative_acceptor.892"; transcript_id "alternative_acceptor.892"; gene_name "CUFF.705,CUFF.706"; flanks "52177853-,52183647^"; structure "1-,2-"; splice_chain "52178712-,52183647-";
chr5	juncbase	jcn_only_AA	472080	472794	.	-	.	gene_id "jcn_only_AA.1175"; transcript_id "jcn_only_AA.1175"; gene_name "CUFF.683"; flanks "472080-,472794^"; structure "1-,2-"; splice_chain "472080-,466641-";
chr5	juncbase	jcn_only_AA	471938	472794	.	-	.	gene_id "jcn_only_AA.1176"; transcript_id "jcn_only_AA.1176"; gene_name "CUFF.683"; flanks "471938-,472794^"; structure "1-,2-"; splice_chain "471938-,466641-";
chr5	juncbase	jcn_only_AA	472708	472794	.	-	.	gene_id "jcn_only_AA.1177"; transcript_id "jcn_only_AA.1177"; gene_name "CUFF.683"; flanks "472708-,472794^"; structure "1-,2-"; splice_chain "472708-,466641-";
chr5	juncbase	jcn_only_AD	64907584	64906870	.	-	.	gene_id "jcn_only_AD.1483"; transcript_id "jcn_only_AD.1483"; gene_name "CUFF.722"; flanks "64907584-,64906870^"; structure "1^,2^"; splice_chain "64907584^,64907430^";
chr5	juncbase	jcn_only_AA	139876863	139884406	.	+	.	gene_id "jcn_only_AA.1178"; transcript_id "jcn_only_AA.1178"; gene_name "CUFF.759"; flanks "139876863-,139884406^"; structure "1-,2-"; splice_chain "139877623-,139884406-";
chr5	juncbase	intron_retention	149786715	149786523	.	-	.	gene_id "intron_retention.963"; transcript_id "intron_retention.963"; gene_name "CUFF.772"; flanks "149786715-,149786523^"; structure "0,1^2-"; splice_chain ",149786715^149786523-";
chr5	juncbase	jcn_only_AD	177636433	177637133	.	+	.	gene_id "jcn_only_AD.1484"; transcript_id "jcn_only_AD.1484"; gene_name "CUFF.775"; flanks "177636433-,177637133^"; structure "1^,2^"; splice_chain "177636433^,177636448^";
chr5	juncbase	cassette	127418427	127412785	.	-	.	gene_id "cassette.678"; transcript_id "cassette.678"; gene_name "CUFF.744"; flanks "127418427-,127412785^"; structure "0,1-2^"; splice_chain ",127417883-127417665^";
chr5	juncbase	cassette	127418427	127396936	.	-	.	gene_id "cassette.679"; transcript_id "cassette.679"; gene_name "CUFF.744"; flanks "127418427-,127396936^"; structure "0,1-2^"; splice_chain ",127417883-127417665^";
chr5	juncbase	alternative_acceptor	127417883	127418427	.	-	.	gene_id "alternative_acceptor.893"; transcript_id "alternative_acceptor.893"; gene_name "CUFF.744"; flanks "127417883-,127418427^"; structure "1-,2-"; splice_chain "127417883-,127398192-";
chr5	juncbase	alternative_acceptor	127417886	127418427	.	-	.	gene_id "alternative_acceptor.894"; transcript_id "alternative_acceptor.894"; gene_name "CUFF.744"; flanks "127417886-,127418427^"; structure "1-,2-"; splice_chain "127417886-,127398192-";
chr5	juncbase	jcn_only_AD	149785822	149782875	.	-	.	gene_id "jcn_only_AD.1485"; transcript_id "jcn_only_AD.1485"; gene_name "CUFF.764"; flanks "149785822-,149782875^"; structure "1^,2^"; splice_chain "149785822^,149784243^";
chr5	juncbase	jcn_only_AD	134190852	134193047	.	+	.	gene_id "jcn_only_AD.1486"; transcript_id "jcn_only_AD.1486"; gene_name "CUFF.748"; flanks "134190852-,134193047^"; structure "1^,2^"; splice_chain "134190852^,134191017^";
chr5	juncbase	alternative_donor	60194103	60186913	.	-	.	gene_id "alternative_donor.1259"; transcript_id "alternative_donor.1259"; gene_name "CUFF.718"; flanks "60194103-,60186913^"; structure "1^,2^"; splice_chain "60194103^,60187864^";
chr5	juncbase	alternative_acceptor	472080	472794	.	-	.	gene_id "alternative_acceptor.895"; transcript_id "alternative_acceptor.895"; gene_name "CUFF.683"; flanks "472080-,472794^"; structure "1-,2-"; splice_chain "472080-,466641-";
chr5	juncbase	alternative_acceptor	471938	472794	.	-	.	gene_id "alternative_acceptor.896"; transcript_id "alternative_acceptor.896"; gene_name "CUFF.683"; flanks "471938-,472794^"; structure "1-,2-"; splice_chain "471938-,466641-";
chr5	juncbase	alternative_acceptor	472708	472794	.	-	.	gene_id "alternative_acceptor.897"; transcript_id "alternative_acceptor.897"; gene_name "CUFF.683"; flanks "472708-,472794^"; structure "1-,2-"; splice_chain "472708-,466641-";
chr5	juncbase	intron_retention	64887275	64886129	.	-	.	gene_id "intron_retention.964"; transcript_id "intron_retention.964"; gene_name "CUFF.722"; flanks "64887275-,64886129^"; structure "0,1^2-"; splice_chain ",64887275^64886129-";
chr5	juncbase	jcn_only_AA	52177853	52183647	.	+	.	gene_id "jcn_only_AA.1179"; transcript_id "jcn_only_AA.1179"; gene_name "CUFF.705,CUFF.706"; flanks "52177853-,52183647^"; structure "1-,2-"; splice_chain "52178712-,52183647-";
chr5	juncbase	alternative_acceptor	472080	472794	.	-	.	gene_id "alternative_acceptor.898"; transcript_id "alternative_acceptor.898"; gene_name "CUFF.683"; flanks "472080-,472794^"; structure "1-,2-"; splice_chain "472080-,471938-";
chr5	juncbase	alternative_acceptor	466641	472794	.	-	.	gene_id "alternative_acceptor.899"; transcript_id "alternative_acceptor.899"; gene_name "CUFF.683"; flanks "466641-,472794^"; structure "1-,2-"; splice_chain "471938-,466641-";
chr5	juncbase	alternative_acceptor	472708	472794	.	-	.	gene_id "alternative_acceptor.900"; transcript_id "alternative_acceptor.900"; gene_name "CUFF.683"; flanks "472708-,472794^"; structure "1-,2-"; splice_chain "472708-,471938-";
chr5	juncbase	alternative_donor	134190852	134193047	.	+	.	gene_id "alternative_donor.1260"; transcript_id "alternative_donor.1260"; gene_name "CUFF.748"; flanks "134190852-,134193047^"; structure "1^,2^"; splice_chain "134190852^,134191017^";
chr5	juncbase	cassette	54420631	54415746	.	-	.	gene_id "cassette.680"; transcript_id "cassette.680"; gene_name "CUFF.710"; flanks "54420631-,54415746^"; structure "0,1-2^"; splice_chain ",54416378-54416253^";
chr5	juncbase	jcn_only_AA	36177394	36183942	.	+	.	gene_id "jcn_only_AA.1180"; transcript_id "jcn_only_AA.1180"; gene_name "CUFF.693"; flanks "36177394-,36183942^"; structure "1-,2-"; splice_chain "36181920-,36183942-";
chr5	juncbase	alternative_acceptor	50685766	50687177	.	+	.	gene_id "alternative_acceptor.901"; transcript_id "alternative_acceptor.901"; gene_name "CUFF.704,CUFF.717"; flanks "50685766-,50687177^"; structure "1-,2-"; splice_chain "50687108-,50687177-";
chr5	juncbase	jcn_only_AD	37370923	37364486	.	-	.	gene_id "jcn_only_AD.1487"; transcript_id "jcn_only_AD.1487"; gene_name "CUFF.699,CUFF.722"; flanks "37370923-,37364486^"; structure "1^,2^"; splice_chain "37370923^,37370768^";
chr5	juncbase	alternative_donor	128862149	128863441	.	+	.	gene_id "alternative_donor.1261"; transcript_id "alternative_donor.1261"; gene_name "CUFF.745"; flanks "128862149-,128863441^"; structure "1^,2^"; splice_chain "128862149^,128862208^";
chr5	juncbase	intron_retention	139851880	139862165	.	+	.	gene_id "intron_retention.965"; transcript_id "intron_retention.965"; gene_name ""; flanks "139851880-,139862165^"; structure "0,1^2-"; splice_chain ",139851880^139862165-";
chr5	juncbase	jcn_only_AA	36668813	36725216	.	-	.	gene_id "jcn_only_AA.1181"; transcript_id "jcn_only_AA.1181"; gene_name "CUFF.696"; flanks "36668813-,36725216^"; structure "1-,2-"; splice_chain "36705953-,36668813-";
chr5	juncbase	jcn_only_AD	60214092	60200700	.	-	.	gene_id "jcn_only_AD.1488"; transcript_id "jcn_only_AD.1488"; gene_name "CUFF.687,CUFF.718"; flanks "60214092-,60200700^"; structure "1^,2^"; splice_chain "60214092^,60203107^";
chr5	juncbase	intron_retention	54456071	54456948	.	+	.	gene_id "intron_retention.966"; transcript_id "intron_retention.966"; gene_name ""; flanks "54456071-,54456948^"; structure "0,1^2-"; splice_chain ",54456071^54456948-";
chr5	juncbase	intron_retention	141041610	141041356	.	-	.	gene_id "intron_retention.967"; transcript_id "intron_retention.967"; gene_name "CUFF.764"; flanks "141041610-,141041356^"; structure "0,1^2-"; splice_chain ",141041610^141041356-";
chr5	juncbase	intron_retention	177631741	177631816	.	+	.	gene_id "intron_retention.968"; transcript_id "intron_retention.968"; gene_name "CUFF.775"; flanks "177631741-,177631816^"; structure "0,1^2-"; splice_chain ",177631741^177631816-";
chr5	juncbase	intron_retention	134181902	134190588	.	+	.	gene_id "intron_retention.969"; transcript_id "intron_retention.969"; gene_name ""; flanks "134181902-,134190588^"; structure "0,1^2-"; splice_chain ",134181902^134190588-";
chr5	juncbase	cassette	56472227	56526673	.	+	.	gene_id "cassette.681"; transcript_id "cassette.681"; gene_name "CUFF.717"; flanks "56472227-,56526673^"; structure "0,1-2^"; splice_chain ",56509901-56510020^";
chr5	juncbase	cassette	149792188	149785884	.	-	.	gene_id "cassette.682"; transcript_id "cassette.682"; gene_name "CUFF.772"; flanks "149792188-,149785884^"; structure "0,1-2^"; splice_chain ",149786887-149786715^";
chr5	juncbase	alternative_donor	129019966	129030413	.	+	.	gene_id "alternative_donor.1262"; transcript_id "alternative_donor.1262"; gene_name "CUFF.745"; flanks "129019966-,129030413^"; structure "1^,2^"; splice_chain "129019966^,129023907^";
chr5	juncbase	cassette	64909925	64907708	.	-	.	gene_id "cassette.683"; transcript_id "cassette.683"; gene_name "CUFF.722"; flanks "64909925-,64907708^"; structure "0,1-2^"; splice_chain ",64909682-64909554^";
chr5	juncbase	cassette	54456224	54459883	.	+	.	gene_id "cassette.684"; transcript_id "cassette.684"; gene_name "CUFF.712"; flanks "54456224-,54459883^"; structure "0,1-2^"; splice_chain ",54456822-54457083^";
chr5	juncbase	intron_retention	178045557	178043949	.	-	.	gene_id "intron_retention.970"; transcript_id "intron_retention.970"; gene_name ""; flanks "178045557-,178043949^"; structure "0,1^2-"; splice_chain ",178045557^178043949-";
chr5	juncbase	jcn_only_AA	37309369	37310654	.	-	.	gene_id "jcn_only_AA.1182"; transcript_id "jcn_only_AA.1182"; gene_name "CUFF.699"; flanks "37309369-,37310654^"; structure "1-,2-"; splice_chain "37309674-,37309369-";
chr5	juncbase	intron_retention	54566406	54566315	.	-	.	gene_id "intron_retention.971"; transcript_id "intron_retention.971"; gene_name "CUFF.713"; flanks "54566406-,54566315^"; structure "0,1^2-"; splice_chain ",54566406^54566315-";
chr5	juncbase	alternative_acceptor	139918668	139921757	.	+	.	gene_id "alternative_acceptor.902"; transcript_id "alternative_acceptor.902"; gene_name ""; flanks "139918668-,139921757^"; structure "1-,2-"; splice_chain "139918944-,139921757-";
chr5	juncbase	cassette	60224691	60217982	.	-	.	gene_id "cassette.685"; transcript_id "cassette.685"; gene_name "CUFF.718"; flanks "60224691-,60217982^"; structure "0,1-2^"; splice_chain ",60220335-60220118^";
chr5	juncbase	alternative_acceptor	60186913	60194103	.	-	.	gene_id "alternative_acceptor.903"; transcript_id "alternative_acceptor.903"; gene_name "CUFF.718"; flanks "60186913-,60194103^"; structure "1-,2-"; splice_chain "60189470-,60186913-";
chr5	juncbase	intron_retention	149785822	149781567	.	-	.	gene_id "intron_retention.972"; transcript_id "intron_retention.972"; gene_name "CUFF.772"; flanks "149785822-,149781567^"; structure "0,1^2-"; splice_chain ",149785822^149781567-";
chr5	juncbase	cassette	64920021	64910046	.	-	.	gene_id "cassette.686"; transcript_id "cassette.686"; gene_name "CUFF.722"; flanks "64920021-,64910046^"; structure "0,1-2^"; splice_chain ",64914082-64913920^";
chr5	juncbase	alternative_acceptor	52161651	52177705	.	+	.	gene_id "alternative_acceptor.904"; transcript_id "alternative_acceptor.904"; gene_name "CUFF.706"; flanks "52161651-,52177705^"; structure "1-,2-"; splice_chain "52162872-,52177705-";
chr5	juncbase	alternative_acceptor	36177394	36183942	.	+	.	gene_id "alternative_acceptor.905"; transcript_id "alternative_acceptor.905"; gene_name "CUFF.693"; flanks "36177394-,36183942^"; structure "1-,2-"; splice_chain "36181920-,36183942-";
chr5	juncbase	alternative_acceptor	139815842	139818079	.	+	.	gene_id "alternative_acceptor.906"; transcript_id "alternative_acceptor.906"; gene_name ""; flanks "139815842-,139818079^"; structure "1-,2-"; splice_chain "139818046-,139818079-";
chr5	juncbase	alternative_acceptor	139815842	139818088	.	+	.	gene_id "alternative_acceptor.907"; transcript_id "alternative_acceptor.907"; gene_name ""; flanks "139815842-,139818088^"; structure "1-,2-"; splice_chain "139818046-,139818088-";
chr5	juncbase	jcn_only_AA	127398192	127418427	.	-	.	gene_id "jcn_only_AA.1183"; transcript_id "jcn_only_AA.1183"; gene_name "CUFF.744"; flanks "127398192-,127418427^"; structure "1-,2-"; splice_chain "127417886-,127398192-";
chr5	juncbase	jcn_only_AA	127417883	127418427	.	-	.	gene_id "jcn_only_AA.1184"; transcript_id "jcn_only_AA.1184"; gene_name "CUFF.744"; flanks "127417883-,127418427^"; structure "1-,2-"; splice_chain "127417886-,127417883-";
chr5	juncbase	jcn_only_AA	36163858	36177067	.	+	.	gene_id "jcn_only_AA.1185"; transcript_id "jcn_only_AA.1185"; gene_name "CUFF.693"; flanks "36163858-,36177067^"; structure "1-,2-"; splice_chain "36166621-,36177067-";
chr5	juncbase	alternative_acceptor	178047674	178050257	.	-	.	gene_id "alternative_acceptor.908"; transcript_id "alternative_acceptor.908"; gene_name "CUFF.776"; flanks "178047674-,178050257^"; structure "1-,2-"; splice_chain "178047674-,178046897-";
chr5	juncbase	alternative_acceptor	178049460	178050257	.	-	.	gene_id "alternative_acceptor.909"; transcript_id "alternative_acceptor.909"; gene_name "CUFF.776"; flanks "178049460-,178050257^"; structure "1-,2-"; splice_chain "178049460-,178046897-";
chr5	juncbase	jcn_only_AD	60194103	60186913	.	-	.	gene_id "jcn_only_AD.1489"; transcript_id "jcn_only_AD.1489"; gene_name "CUFF.718"; flanks "60194103-,60186913^"; structure "1^,2^"; splice_chain "60194103^,60187864^";
chr5	juncbase	jcn_only_AA	140031391	140031673	.	+	.	gene_id "jcn_only_AA.1186"; transcript_id "jcn_only_AA.1186"; gene_name "CUFF.759"; flanks "140031391-,140031673^"; structure "1-,2-"; splice_chain "140031652-,140031673-";
chr5	juncbase	cassette	140028122	140031299	.	+	.	gene_id "cassette.687"; transcript_id "cassette.687"; gene_name "CUFF.759"; flanks "140028122-,140031299^"; structure "0,1-2^"; splice_chain ",140028468-140028565^";
chr5	juncbase	jcn_only_AD	145616995	145634506	.	+	.	gene_id "jcn_only_AD.1490"; transcript_id "jcn_only_AD.1490"; gene_name "CUFF.767"; flanks "145616995-,145634506^"; structure "1^,2^"; splice_chain "145616995^,145631438^";
chr5	juncbase	alternative_acceptor	139915123	139916974	.	+	.	gene_id "alternative_acceptor.910"; transcript_id "alternative_acceptor.910"; gene_name "CUFF.704,CUFF.759"; flanks "139915123-,139916974^"; structure "1-,2-"; splice_chain "139916923-,139916974-";
chr4	juncbase	jcn_only_AA	83536172	83542365	.	-	.	gene_id "jcn_only_AA.1187"; transcript_id "jcn_only_AA.1187"; gene_name "CUFF.643"; flanks "83536172-,83542365^"; structure "1-,2-"; splice_chain "83536234-,83536172-";
chr4	juncbase	cassette	649795	650663	.	+	.	gene_id "cassette.688"; transcript_id "cassette.688"; gene_name "CUFF.579"; flanks "649795-,650663^"; structure "0,1-2^"; splice_chain ",650034-650081^";
chr4	juncbase	alternative_donor	124582988	124750250	.	+	.	gene_id "alternative_donor.1263"; transcript_id "alternative_donor.1263"; gene_name "CUFF.656"; flanks "124582988-,124750250^"; structure "1^,2^"; splice_chain "124582988^,124695530^";
chr4	juncbase	jcn_only_AA	162954807	163032423	.	-	.	gene_id "jcn_only_AA.1188"; transcript_id "jcn_only_AA.1188"; gene_name "CUFF.673"; flanks "162954807-,163032423^"; structure "1-,2-"; splice_chain "162954810-,162954807-";
chr4	juncbase	jcn_only_AA	152147238	152148912	.	-	.	gene_id "jcn_only_AA.1189"; transcript_id "jcn_only_AA.1189"; gene_name "CUFF.667"; flanks "152147238-,152148912^"; structure "1-,2-"; splice_chain "152147392-,152147238-";
chr4	juncbase	cassette	6114449	6087356	.	-	.	gene_id "cassette.689"; transcript_id "cassette.689"; gene_name "CUFF.590"; flanks "6114449-,6087356^"; structure "0,1-2^"; splice_chain ",6107694-6107200^";
chr4	juncbase	alternative_acceptor	124750342	124846339	.	+	.	gene_id "alternative_acceptor.911"; transcript_id "alternative_acceptor.911"; gene_name "CUFF.656"; flanks "124750342-,124846339^"; structure "1-,2-"; splice_chain "124784730-,124846339-";
chr4	juncbase	alternative_acceptor	99399897	99403156	.	-	.	gene_id "alternative_acceptor.912"; transcript_id "alternative_acceptor.912"; gene_name "CUFF.647"; flanks "99399897-,99403156^"; structure "1-,2-"; splice_chain "99399961-,99399897-";
chr4	juncbase	jcn_only_AD	74486156	74477546	.	-	.	gene_id "jcn_only_AD.1491"; transcript_id "jcn_only_AD.1491"; gene_name ""; flanks "74486156-,74477546^"; structure "1^,2^"; splice_chain "74486156^,74486005^";
chr4	juncbase	intron_retention	120379232	120381898	.	+	.	gene_id "intron_retention.973"; transcript_id "intron_retention.973"; gene_name ""; flanks "120379232-,120381898^"; structure "0,1^2-"; splice_chain ",120379232^120381898-";
chr4	juncbase	jcn_only_AD	152097686	152096826	.	-	.	gene_id "jcn_only_AD.1492"; transcript_id "jcn_only_AD.1492"; gene_name "CUFF.667"; flanks "152097686-,152096826^"; structure "1^,2^"; splice_chain "152097686^,152097677^";
chr4	juncbase	alternative_acceptor	99428879	99578691	.	-	.	gene_id "alternative_acceptor.913"; transcript_id "alternative_acceptor.913"; gene_name "CUFF.647"; flanks "99428879-,99578691^"; structure "1-,2-"; splice_chain "99496056-,99428879-";
chr4	juncbase	cassette	37839235	37841470	.	+	.	gene_id "cassette.690"; transcript_id "cassette.690"; gene_name "CUFF.607"; flanks "37839235-,37841470^"; structure "0,1-2^"; splice_chain ",37841139-37841305^";
chr4	juncbase	alternative_donor	6925838	6969031	.	+	.	gene_id "alternative_donor.1264"; transcript_id "alternative_donor.1264"; gene_name "CUFF.593"; flanks "6925838-,6969031^"; structure "1^,2^"; splice_chain "6925838^,6956065^";
chr4	juncbase	intron_retention	20618570	20622027	.	+	.	gene_id "intron_retention.974"; transcript_id "intron_retention.974"; gene_name "CUFF.603"; flanks "20618570-,20622027^"; structure "0,1^2-"; splice_chain ",20618570^20622027-";
chr4	juncbase	jcn_only_AD	6925838	6969031	.	+	.	gene_id "jcn_only_AD.1493"; transcript_id "jcn_only_AD.1493"; gene_name "CUFF.593"; flanks "6925838-,6969031^"; structure "1^,2^"; splice_chain "6925838^,6956065^";
chr4	juncbase	jcn_only_AA	120449944	120471534	.	+	.	gene_id "jcn_only_AA.1190"; transcript_id "jcn_only_AA.1190"; gene_name "CUFF.653"; flanks "120449944-,120471534^"; structure "1-,2-"; splice_chain "120464908-,120471534-";
chr4	juncbase	jcn_only_AD	74481608	74459310	.	-	.	gene_id "jcn_only_AD.1494"; transcript_id "jcn_only_AD.1494"; gene_name "CUFF.606,CUFF.630"; flanks "74481608-,74459310^"; structure "1^,2^"; splice_chain "74481608^,74464357^";
chr4	juncbase	jcn_only_AA	120379232	120381898	.	+	.	gene_id "jcn_only_AA.1191"; transcript_id "jcn_only_AA.1191"; gene_name "CUFF.681"; flanks "120379232-,120381898^"; structure "1-,2-"; splice_chain "120381338-,120381898-";
chr4	juncbase	cassette	20555591	20568885	.	+	.	gene_id "cassette.691"; transcript_id "cassette.691"; gene_name "CUFF.603"; flanks "20555591-,20568885^"; structure "0,1-2^"; splice_chain ",20555931-20555963^";
chr4	juncbase	cassette	108109584	107847106	.	-	.	gene_id "cassette.692"; transcript_id "cassette.692"; gene_name "CUFF.649"; flanks "108109584-,107847106^"; structure "0,1-2^"; splice_chain ",108049166-108049099^";
chr4	juncbase	jcn_only_AA	152096826	152097686	.	-	.	gene_id "jcn_only_AA.1192"; transcript_id "jcn_only_AA.1192"; gene_name "CUFF.667"; flanks "152096826-,152097686^"; structure "1-,2-"; splice_chain "152096847-,152096826-";
chr4	juncbase	cassette	6081899	6066735	.	-	.	gene_id "cassette.693"; transcript_id "cassette.693"; gene_name "CUFF.590"; flanks "6081899-,6066735^"; structure "0,1-2^"; splice_chain ",6080725-6080666^";
chr4	juncbase	jcn_only_AD	186185652	186188123	.	+	.	gene_id "jcn_only_AD.1495"; transcript_id "jcn_only_AD.1495"; gene_name "CUFF.681"; flanks "186185652-,186188123^"; structure "1^,2^"; splice_chain "186185652^,186185764^";
chr4	juncbase	intron_retention	83821525	83821376	.	-	.	gene_id "intron_retention.975"; transcript_id "intron_retention.975"; gene_name ""; flanks "83821525-,83821376^"; structure "0,1^2-"; splice_chain ",83821525^83821376-";
chr4	juncbase	jcn_only_AA	99399897	99403156	.	-	.	gene_id "jcn_only_AA.1193"; transcript_id "jcn_only_AA.1193"; gene_name "CUFF.647"; flanks "99399897-,99403156^"; structure "1-,2-"; splice_chain "99399961-,99399897-";
chr4	juncbase	cassette	83820866	83816927	.	-	.	gene_id "cassette.694"; transcript_id "cassette.694"; gene_name "CUFF.644"; flanks "83820866-,83816927^"; structure "0,1-2^"; splice_chain ",83819215-83819142^";
chr4	juncbase	cassette	83821230	83816927	.	-	.	gene_id "cassette.695"; transcript_id "cassette.695"; gene_name "CUFF.644"; flanks "83821230-,83816927^"; structure "0,1-2^"; splice_chain ",83819215-83819142^";
chr4	juncbase	alternative_donor	120449944	120471534	.	+	.	gene_id "alternative_donor.1265"; transcript_id "alternative_donor.1265"; gene_name "CUFF.653"; flanks "120449944-,120471534^"; structure "1^,2^"; splice_chain "120449944^,120465000^";
chr4	juncbase	jcn_only_AA	37831753	37841480	.	+	.	gene_id "jcn_only_AA.1194"; transcript_id "jcn_only_AA.1194"; gene_name "CUFF.607"; flanks "37831753-,37841480^"; structure "1-,2-"; splice_chain "37836240-,37841480-";
chr4	juncbase	jcn_only_AA	74477546	74486156	.	-	.	gene_id "jcn_only_AA.1195"; transcript_id "jcn_only_AA.1195"; gene_name "CUFF.630"; flanks "74477546-,74486156^"; structure "1-,2-"; splice_chain "74481653-,74477546-";
chr4	juncbase	alternative_donor	83821525	83821376	.	-	.	gene_id "alternative_donor.1266"; transcript_id "alternative_donor.1266"; gene_name "CUFF.592"; flanks "83821525-,83821376^"; structure "1^,2^"; splice_chain "83821525^,83821487^";
chr4	juncbase	intron_retention	2933282	2933192	.	-	.	gene_id "intron_retention.976"; transcript_id "intron_retention.976"; gene_name ""; flanks "2933282-,2933192^"; structure "0,1^2-"; splice_chain ",2933282^2933192-";
chr4	juncbase	alternative_donor	36245313	36231267	.	-	.	gene_id "alternative_donor.1267"; transcript_id "alternative_donor.1267"; gene_name ""; flanks "36245313-,36231267^"; structure "1^,2^"; splice_chain "36245313^,36245231^";
chr4	juncbase	jcn_only_AA	3954900	3957051	.	-	.	gene_id "jcn_only_AA.1196"; transcript_id "jcn_only_AA.1196"; gene_name "CUFF.587"; flanks "3954900-,3957051^"; structure "1-,2-"; splice_chain "3956760-,3954900-";
chr4	juncbase	intron_retention	2932954	2932877	.	-	.	gene_id "intron_retention.977"; transcript_id "intron_retention.977"; gene_name ""; flanks "2932954-,2932877^"; structure "0,1^2-"; splice_chain ",2932954^2932877-";
chr4	juncbase	alternative_donor	77189921	77192721	.	+	.	gene_id "alternative_donor.1268"; transcript_id "alternative_donor.1268"; gene_name "CUFF.633"; flanks "77189921-,77192721^"; structure "1^,2^"; splice_chain "77189921^,77189966^";
chr4	juncbase	alternative_acceptor	120379232	120381898	.	+	.	gene_id "alternative_acceptor.914"; transcript_id "alternative_acceptor.914"; gene_name "CUFF.681"; flanks "120379232-,120381898^"; structure "1-,2-"; splice_chain "120381338-,120381898-";
chr4	juncbase	alternative_acceptor	645877	647641	.	+	.	gene_id "alternative_acceptor.915"; transcript_id "alternative_acceptor.915"; gene_name ""; flanks "645877-,647641^"; structure "1-,2-"; splice_chain "646285-,647641-";
chr4	juncbase	jcn_only_AD	3949817	3945099	.	-	.	gene_id "jcn_only_AD.1496"; transcript_id "jcn_only_AD.1496"; gene_name "CUFF.587"; flanks "3949817-,3945099^"; structure "1^,2^"; splice_chain "3949817^,3948353^";
chr4	juncbase	jcn_only_AD	3954838	3945099	.	-	.	gene_id "jcn_only_AD.1497"; transcript_id "jcn_only_AD.1497"; gene_name "CUFF.587"; flanks "3954838-,3945099^"; structure "1^,2^"; splice_chain "3954838^,3948353^";
chr4	juncbase	jcn_only_AD	3948871	3945099	.	-	.	gene_id "jcn_only_AD.1498"; transcript_id "jcn_only_AD.1498"; gene_name "CUFF.587"; flanks "3948871-,3945099^"; structure "1^,2^"; splice_chain "3948871^,3948353^";
chr4	juncbase	jcn_only_AD	3948496	3945099	.	-	.	gene_id "jcn_only_AD.1499"; transcript_id "jcn_only_AD.1499"; gene_name "CUFF.587"; flanks "3948496-,3945099^"; structure "1^,2^"; splice_chain "3948496^,3948353^";
chr4	juncbase	intron_retention	2932788	2932680	.	-	.	gene_id "intron_retention.978"; transcript_id "intron_retention.978"; gene_name ""; flanks "2932788-,2932680^"; structure "0,1^2-"; splice_chain ",2932788^2932680-";
chr4	juncbase	jcn_only_AD	83821525	83821376	.	-	.	gene_id "jcn_only_AD.1500"; transcript_id "jcn_only_AD.1500"; gene_name "CUFF.592"; flanks "83821525-,83821376^"; structure "1^,2^"; splice_chain "83821525^,83821487^";
chr4	juncbase	alternative_donor	6565287	6537104	.	-	.	gene_id "alternative_donor.1269"; transcript_id "alternative_donor.1269"; gene_name "CUFF.592"; flanks "6565287-,6537104^"; structure "1^,2^"; splice_chain "6565287^,6557261^";
chr4	juncbase	intron_retention	2934833	2934417	.	-	.	gene_id "intron_retention.979"; transcript_id "intron_retention.979"; gene_name ""; flanks "2934833-,2934417^"; structure "0,1^2-"; splice_chain ",2934833^2934417-";
chr4	juncbase	cassette	6382724	6377658	.	-	.	gene_id "cassette.696"; transcript_id "cassette.696"; gene_name "CUFF.592"; flanks "6382724-,6377658^"; structure "0,1-2^"; splice_chain ",6380299-6380134^";
chr4	juncbase	alternative_donor	3957051	3954900	.	-	.	gene_id "alternative_donor.1270"; transcript_id "alternative_donor.1270"; gene_name "CUFF.587,CUFF.630"; flanks "3957051-,3954900^"; structure "1^,2^"; splice_chain "3957051^,3956687^";
chr4	juncbase	alternative_acceptor	77977253	77987402	.	-	.	gene_id "alternative_acceptor.916"; transcript_id "alternative_acceptor.916"; gene_name "CUFF.637"; flanks "77977253-,77987402^"; structure "1-,2-"; splice_chain "77979788-,77977253-";
chr4	juncbase	jcn_only_AD	77189921	77192721	.	+	.	gene_id "jcn_only_AD.1501"; transcript_id "jcn_only_AD.1501"; gene_name "CUFF.633"; flanks "77189921-,77192721^"; structure "1^,2^"; splice_chain "77189921^,77189966^";
chr4	juncbase	cassette	7008453	7011604	.	+	.	gene_id "cassette.697"; transcript_id "cassette.697"; gene_name "CUFF.593"; flanks "7008453-,7011604^"; structure "0,1-2^"; splice_chain ",7009251-7009352^";
chr4	juncbase	jcn_only_AA	74464435	74477448	.	-	.	gene_id "jcn_only_AA.1197"; transcript_id "jcn_only_AA.1197"; gene_name "CUFF.630"; flanks "74464435-,74477448^"; structure "1-,2-"; splice_chain "74470304-,74464435-";
chr4	juncbase	jcn_only_AD	124571484	124573942	.	+	.	gene_id "jcn_only_AD.1502"; transcript_id "jcn_only_AD.1502"; gene_name "CUFF.656"; flanks "124571484-,124573942^"; structure "1^,2^"; splice_chain "124571484^,124571487^";
chr4	juncbase	cassette	162508607	162463845	.	-	.	gene_id "cassette.698"; transcript_id "cassette.698"; gene_name "CUFF.673"; flanks "162508607-,162463845^"; structure "0,1-2^"; splice_chain ",162473729-162473640^";
chr4	juncbase	cassette	56473465	56466742	.	-	.	gene_id "cassette.699"; transcript_id "cassette.699"; gene_name "CUFF.617"; flanks "56473465-,56466742^"; structure "0,1-2^"; splice_chain ",56471516-56471442^";
chr4	juncbase	cassette	56473604	56466742	.	-	.	gene_id "cassette.700"; transcript_id "cassette.700"; gene_name "CUFF.617"; flanks "56473604-,56466742^"; structure "0,1-2^"; splice_chain ",56471516-56471442^";
chr4	juncbase	jcn_only_AA	6055875	6058424	.	-	.	gene_id "jcn_only_AA.1198"; transcript_id "jcn_only_AA.1198"; gene_name "CUFF.590"; flanks "6055875-,6058424^"; structure "1-,2-"; splice_chain "6056530-,6055875-";
chr4	juncbase	cassette	70512648	70465112	.	-	.	gene_id "cassette.701"; transcript_id "cassette.701"; gene_name "CUFF.628"; flanks "70512648-,70465112^"; structure "0,1-2^"; splice_chain ",70501540-70501409^";
chr4	juncbase	cassette	1713601	1701797	.	-	.	gene_id "cassette.702"; transcript_id "cassette.702"; gene_name "CUFF.581"; flanks "1713601-,1701797^"; structure "0,1-2^"; splice_chain ",1705427-1705323^";
chr4	juncbase	alternative_donor	120381975	120382872	.	+	.	gene_id "alternative_donor.1271"; transcript_id "alternative_donor.1271"; gene_name "CUFF.653"; flanks "120381975-,120382872^"; structure "1^,2^"; splice_chain "120381975^,120381982^";
chr4	juncbase	alternative_donor	120384134	120414488	.	+	.	gene_id "alternative_donor.1272"; transcript_id "alternative_donor.1272"; gene_name "CUFF.653"; flanks "120384134-,120414488^"; structure "1^,2^"; splice_chain "120384134^,120409872^";
chr4	juncbase	alternative_acceptor	152096826	152097686	.	-	.	gene_id "alternative_acceptor.917"; transcript_id "alternative_acceptor.917"; gene_name "CUFF.667"; flanks "152096826-,152097686^"; structure "1-,2-"; splice_chain "152096847-,152096826-";
chr4	juncbase	jcn_only_AA	77977253	77987402	.	-	.	gene_id "jcn_only_AA.1199"; transcript_id "jcn_only_AA.1199"; gene_name "CUFF.637"; flanks "77977253-,77987402^"; structure "1-,2-"; splice_chain "77979788-,77977253-";
chr4	juncbase	alternative_donor	6382768	6380299	.	-	.	gene_id "alternative_donor.1273"; transcript_id "alternative_donor.1273"; gene_name "CUFF.592"; flanks "6382768-,6380299^"; structure "1^,2^"; splice_chain "6382768^,6382724^";
chr4	juncbase	intron_retention	3949469	3948644	.	-	.	gene_id "intron_retention.980"; transcript_id "intron_retention.980"; gene_name ""; flanks "3949469-,3948644^"; structure "0,1^2-"; splice_chain ",3949469^3948644-";
chr4	juncbase	intron_retention	68927630	68927569	.	-	.	gene_id "intron_retention.981"; transcript_id "intron_retention.981"; gene_name "CUFF.625"; flanks "68927630-,68927569^"; structure "0,1^2-"; splice_chain ",68927630^68927569-";
chr4	juncbase	alternative_donor	120434075	120449895	.	+	.	gene_id "alternative_donor.1274"; transcript_id "alternative_donor.1274"; gene_name "CUFF.653"; flanks "120434075-,120449895^"; structure "1^,2^"; splice_chain "120434075^,120434125^";
chr4	juncbase	jcn_only_AA	99428879	99578691	.	-	.	gene_id "jcn_only_AA.1200"; transcript_id "jcn_only_AA.1200"; gene_name "CUFF.647"; flanks "99428879-,99578691^"; structure "1-,2-"; splice_chain "99496056-,99428879-";
chr4	juncbase	jcn_only_AA	70513413	70518906	.	-	.	gene_id "jcn_only_AA.1201"; transcript_id "jcn_only_AA.1201"; gene_name "CUFF.628"; flanks "70513413-,70518906^"; structure "1-,2-"; splice_chain "70513416-,70513413-";
chr4	juncbase	jcn_only_AD	57308026	57312861	.	+	.	gene_id "jcn_only_AD.1503"; transcript_id "jcn_only_AD.1503"; gene_name "CUFF.618"; flanks "57308026-,57312861^"; structure "1^,2^"; splice_chain "57308026^,57312543^";
chr4	juncbase	jcn_only_AA	130701254	130724147	.	+	.	gene_id "jcn_only_AA.1202"; transcript_id "jcn_only_AA.1202"; gene_name "CUFF.659"; flanks "130701254-,130724147^"; structure "1-,2-"; splice_chain "130710067-,130724147-";
chr4	juncbase	cassette	152095822	152080504	.	-	.	gene_id "cassette.703"; transcript_id "cassette.703"; gene_name "CUFF.667"; flanks "152095822-,152080504^"; structure "0,1-2^"; splice_chain ",152086848-152086741^";
chr4	juncbase	jcn_only_AA	57308026	57312861	.	+	.	gene_id "jcn_only_AA.1203"; transcript_id "jcn_only_AA.1203"; gene_name "CUFF.603,CUFF.618"; flanks "57308026-,57312861^"; structure "1-,2-"; splice_chain "57312523-,57312861-";
chr4	juncbase	jcn_only_AA	3945099	3949817	.	-	.	gene_id "jcn_only_AA.1204"; transcript_id "jcn_only_AA.1204"; gene_name ""; flanks "3945099-,3949817^"; structure "1-,2-"; splice_chain "3949734-,3945099-";
chr4	juncbase	jcn_only_AD	36245313	36231267	.	-	.	gene_id "jcn_only_AD.1504"; transcript_id "jcn_only_AD.1504"; gene_name ""; flanks "36245313-,36231267^"; structure "1^,2^"; splice_chain "36245313^,36245231^";
chr4	juncbase	cassette	2933552	2933192	.	-	.	gene_id "cassette.704"; transcript_id "cassette.704"; gene_name "CUFF.584"; flanks "2933552-,2933192^"; structure "0,1-2^"; splice_chain ",2933390-2933282^";
chr4	juncbase	jcn_only_AA	120415678	120418966	.	+	.	gene_id "jcn_only_AA.1205"; transcript_id "jcn_only_AA.1205"; gene_name "CUFF.653"; flanks "120415678-,120418966^"; structure "1-,2-"; splice_chain "120418817-,120418966-";
chr4	juncbase	jcn_only_AD	3948353	3945099	.	-	.	gene_id "jcn_only_AD.1505"; transcript_id "jcn_only_AD.1505"; gene_name "CUFF.587"; flanks "3948353-,3945099^"; structure "1^,2^"; splice_chain "3948496^,3948353^";
chr4	juncbase	jcn_only_AD	3949817	3945099	.	-	.	gene_id "jcn_only_AD.1506"; transcript_id "jcn_only_AD.1506"; gene_name "CUFF.587"; flanks "3949817-,3945099^"; structure "1^,2^"; splice_chain "3949817^,3948496^";
chr4	juncbase	jcn_only_AD	3954838	3945099	.	-	.	gene_id "jcn_only_AD.1507"; transcript_id "jcn_only_AD.1507"; gene_name "CUFF.587"; flanks "3954838-,3945099^"; structure "1^,2^"; splice_chain "3954838^,3948496^";
chr4	juncbase	jcn_only_AD	3948871	3945099	.	-	.	gene_id "jcn_only_AD.1508"; transcript_id "jcn_only_AD.1508"; gene_name "CUFF.587"; flanks "3948871-,3945099^"; structure "1^,2^"; splice_chain "3948871^,3948496^";
chr4	juncbase	cassette	77996625	77979788	.	-	.	gene_id "cassette.705"; transcript_id "cassette.705"; gene_name "CUFF.637"; flanks "77996625-,77979788^"; structure "0,1-2^"; splice_chain ",77987558-77987402^";
chr4	juncbase	intron_retention	69056966	69054334	.	-	.	gene_id "intron_retention.982"; transcript_id "intron_retention.982"; gene_name "CUFF.626"; flanks "69056966-,69054334^"; structure "0,1^2-"; splice_chain ",69056966^69054334-";
chr4	juncbase	jcn_only_AD	6565287	6537104	.	-	.	gene_id "jcn_only_AD.1509"; transcript_id "jcn_only_AD.1509"; gene_name "CUFF.592"; flanks "6565287-,6537104^"; structure "1^,2^"; splice_chain "6565287^,6557261^";
chr4	juncbase	alternative_acceptor	2934904	2935294	.	-	.	gene_id "alternative_acceptor.918"; transcript_id "alternative_acceptor.918"; gene_name "CUFF.584"; flanks "2934904-,2935294^"; structure "1-,2-"; splice_chain "2934936-,2934904-";
chr4	juncbase	jcn_only_AA	1126228	1126515	.	+	.	gene_id "jcn_only_AA.1206"; transcript_id "jcn_only_AA.1206"; gene_name ""; flanks "1126228-,1126515^"; structure "1-,2-"; splice_chain "1126497-,1126515-";
chr4	juncbase	jcn_only_AD	120381975	120382872	.	+	.	gene_id "jcn_only_AD.1510"; transcript_id "jcn_only_AD.1510"; gene_name "CUFF.653"; flanks "120381975-,120382872^"; structure "1^,2^"; splice_chain "120381975^,120381982^";
chr4	juncbase	alternative_acceptor	2934136	2934327	.	-	.	gene_id "alternative_acceptor.919"; transcript_id "alternative_acceptor.919"; gene_name "CUFF.584"; flanks "2934136-,2934327^"; structure "1-,2-"; splice_chain "2934239-,2934136-";
chr4	juncbase	alternative_acceptor	36152666	36160352	.	-	.	gene_id "alternative_acceptor.920"; transcript_id "alternative_acceptor.920"; gene_name "CUFF.605"; flanks "36152666-,36160352^"; structure "1-,2-"; splice_chain "36159172-,36152666-";
chr4	juncbase	cassette	77977115	77969815	.	-	.	gene_id "cassette.706"; transcript_id "cassette.706"; gene_name "CUFF.637"; flanks "77977115-,77969815^"; structure "0,1-2^"; splice_chain ",77976533-77976303^";
chr4	juncbase	alternative_donor	20525800	20530572	.	+	.	gene_id "alternative_donor.1275"; transcript_id "alternative_donor.1275"; gene_name "CUFF.603"; flanks "20525800-,20530572^"; structure "1^,2^"; splice_chain "20525800^,20526795^";
chr4	juncbase	cassette	56475287	56471516	.	-	.	gene_id "cassette.707"; transcript_id "cassette.707"; gene_name "CUFF.617"; flanks "56475287-,56471516^"; structure "0,1-2^"; splice_chain ",56473633-56473604^";
chr4	juncbase	alternative_donor	124571484	124573942	.	+	.	gene_id "alternative_donor.1276"; transcript_id "alternative_donor.1276"; gene_name "CUFF.656"; flanks "124571484-,124573942^"; structure "1^,2^"; splice_chain "124571484^,124571487^";
chr4	juncbase	jcn_only_AA	99003638	99399806	.	+	.	gene_id "jcn_only_AA.1207"; transcript_id "jcn_only_AA.1207"; gene_name ""; flanks "99003638-,99399806^"; structure "1-,2-"; splice_chain "99393449-,99399806-";
chr4	juncbase	jcn_only_AD	69071753	69057034	.	-	.	gene_id "jcn_only_AD.1511"; transcript_id "jcn_only_AD.1511"; gene_name "CUFF.595"; flanks "69071753-,69057034^"; structure "1^,2^"; splice_chain "69071753^,69057125^";
chr4	juncbase	alternative_donor	162680563	162577646	.	-	.	gene_id "alternative_donor.1277"; transcript_id "alternative_donor.1277"; gene_name "CUFF.592,CUFF.673"; flanks "162680563-,162577646^"; structure "1^,2^"; splice_chain "162680563^,162585968^";
chr4	juncbase	intron_retention	6383504	6382821	.	-	.	gene_id "intron_retention.983"; transcript_id "intron_retention.983"; gene_name "CUFF.592"; flanks "6383504-,6382821^"; structure "0,1^2-"; splice_chain ",6383504^6382821-";
chr4	juncbase	alternative_donor	20570627	20591267	.	+	.	gene_id "alternative_donor.1278"; transcript_id "alternative_donor.1278"; gene_name "CUFF.603"; flanks "20570627-,20591267^"; structure "1^,2^"; splice_chain "20570627^,20574883^";
chr4	juncbase	alternative_acceptor	3945099	3949817	.	-	.	gene_id "alternative_acceptor.921"; transcript_id "alternative_acceptor.921"; gene_name ""; flanks "3945099-,3949817^"; structure "1-,2-"; splice_chain "3949734-,3945099-";
chr4	juncbase	jcn_only_AA	69057242	69078080	.	-	.	gene_id "jcn_only_AA.1208"; transcript_id "jcn_only_AA.1208"; gene_name "CUFF.626"; flanks "69057242-,69078080^"; structure "1-,2-"; splice_chain "69071815-,69057242-";
chr4	juncbase	intron_retention	2933772	2933663	.	-	.	gene_id "intron_retention.984"; transcript_id "intron_retention.984"; gene_name "CUFF.584"; flanks "2933772-,2933663^"; structure "0,1^2-"; splice_chain ",2933772^2933663-";
chr4	juncbase	jcn_only_AD	6382768	6380299	.	-	.	gene_id "jcn_only_AD.1512"; transcript_id "jcn_only_AD.1512"; gene_name "CUFF.592"; flanks "6382768-,6380299^"; structure "1^,2^"; splice_chain "6382768^,6382724^";
chr4	juncbase	jcn_only_AD	6058424	6055875	.	-	.	gene_id "jcn_only_AD.1513"; transcript_id "jcn_only_AD.1513"; gene_name "CUFF.590"; flanks "6058424-,6055875^"; structure "1^,2^"; splice_chain "6058424^,6056475^";
chr4	juncbase	jcn_only_AA	120384134	120414488	.	+	.	gene_id "jcn_only_AA.1209"; transcript_id "jcn_only_AA.1209"; gene_name "CUFF.653"; flanks "120384134-,120414488^"; structure "1-,2-"; splice_chain "120409800-,120414488-";
chr4	juncbase	jcn_only_AD	20570627	20591267	.	+	.	gene_id "jcn_only_AD.1514"; transcript_id "jcn_only_AD.1514"; gene_name "CUFF.603"; flanks "20570627-,20591267^"; structure "1^,2^"; splice_chain "20570627^,20574883^";
chr4	juncbase	jcn_only_AA	661795	663838	.	+	.	gene_id "jcn_only_AA.1210"; transcript_id "jcn_only_AA.1210"; gene_name "CUFF.579"; flanks "661795-,663838^"; structure "1-,2-"; splice_chain "663835-,663838-";
chr4	juncbase	cassette	120376288	120381338	.	+	.	gene_id "cassette.708"; transcript_id "cassette.708"; gene_name "CUFF.653"; flanks "120376288-,120381338^"; structure "0,1-2^"; splice_chain ",120379126-120379325^";
chr4	juncbase	jcn_only_AD	186253867	186260533	.	+	.	gene_id "jcn_only_AD.1515"; transcript_id "jcn_only_AD.1515"; gene_name "CUFF.681"; flanks "186253867-,186260533^"; structure "1^,2^"; splice_chain "186253867^,186253913^";
chr4	juncbase	alternative_acceptor	120415678	120418966	.	+	.	gene_id "alternative_acceptor.922"; transcript_id "alternative_acceptor.922"; gene_name "CUFF.653"; flanks "120415678-,120418966^"; structure "1-,2-"; splice_chain "120418817-,120418966-";
chr4	juncbase	alternative_donor	6969151	6995911	.	+	.	gene_id "alternative_donor.1279"; transcript_id "alternative_donor.1279"; gene_name "CUFF.593"; flanks "6969151-,6995911^"; structure "1^,2^"; splice_chain "6969151^,6989076^";
chr4	juncbase	jcn_only_AD	20525800	20530572	.	+	.	gene_id "jcn_only_AD.1516"; transcript_id "jcn_only_AD.1516"; gene_name "CUFF.603"; flanks "20525800-,20530572^"; structure "1^,2^"; splice_chain "20525800^,20526795^";
chr4	juncbase	intron_retention	2934833	2934485	.	-	.	gene_id "intron_retention.985"; transcript_id "intron_retention.985"; gene_name "CUFF.584"; flanks "2934833-,2934485^"; structure "0,1^2-"; splice_chain ",2934833^2934485-";
chr4	juncbase	intron_retention	99407889	99403326	.	-	.	gene_id "intron_retention.986"; transcript_id "intron_retention.986"; gene_name "CUFF.647"; flanks "99407889-,99403326^"; structure "0,1^2-"; splice_chain ",99407889^99403326-";
chr4	juncbase	intron_retention	83816845	83816000	.	-	.	gene_id "intron_retention.987"; transcript_id "intron_retention.987"; gene_name "CUFF.644"; flanks "83816845-,83816000^"; structure "0,1^2-"; splice_chain ",83816845^83816000-";
chr4	juncbase	cassette	660403	663835	.	+	.	gene_id "cassette.709"; transcript_id "cassette.709"; gene_name "CUFF.579"; flanks "660403-,663835^"; structure "0,1-2^"; splice_chain ",661645-661795^";
chr4	juncbase	jcn_only_AD	6969151	6995911	.	+	.	gene_id "jcn_only_AD.1517"; transcript_id "jcn_only_AD.1517"; gene_name "CUFF.593"; flanks "6969151-,6995911^"; structure "1^,2^"; splice_chain "6969151^,6989076^";
chr4	juncbase	jcn_only_AD	3948353	3945099	.	-	.	gene_id "jcn_only_AD.1518"; transcript_id "jcn_only_AD.1518"; gene_name "CUFF.587"; flanks "3948353-,3945099^"; structure "1^,2^"; splice_chain "3954838^,3948353^";
chr4	juncbase	jcn_only_AD	3949817	3945099	.	-	.	gene_id "jcn_only_AD.1519"; transcript_id "jcn_only_AD.1519"; gene_name "CUFF.587"; flanks "3949817-,3945099^"; structure "1^,2^"; splice_chain "3954838^,3949817^";
chr4	juncbase	jcn_only_AD	3948871	3945099	.	-	.	gene_id "jcn_only_AD.1520"; transcript_id "jcn_only_AD.1520"; gene_name "CUFF.587"; flanks "3948871-,3945099^"; structure "1^,2^"; splice_chain "3954838^,3948871^";
chr4	juncbase	jcn_only_AD	3948496	3945099	.	-	.	gene_id "jcn_only_AD.1521"; transcript_id "jcn_only_AD.1521"; gene_name "CUFF.587"; flanks "3948496-,3945099^"; structure "1^,2^"; splice_chain "3954838^,3948496^";
chr4	juncbase	intron_retention	57302094	57302428	.	+	.	gene_id "intron_retention.988"; transcript_id "intron_retention.988"; gene_name "CUFF.618"; flanks "57302094-,57302428^"; structure "0,1^2-"; splice_chain ",57302094^57302428-";
chr4	juncbase	jcn_only_AD	3957051	3954900	.	-	.	gene_id "jcn_only_AD.1522"; transcript_id "jcn_only_AD.1522"; gene_name "CUFF.587,CUFF.630"; flanks "3957051-,3954900^"; structure "1^,2^"; splice_chain "3957051^,3956687^";
chr4	juncbase	alternative_acceptor	661795	663838	.	+	.	gene_id "alternative_acceptor.923"; transcript_id "alternative_acceptor.923"; gene_name "CUFF.579"; flanks "661795-,663838^"; structure "1-,2-"; splice_chain "663835-,663838-";
chr4	juncbase	cassette	56473604	56471516	.	-	.	gene_id "cassette.710"; transcript_id "cassette.710"; gene_name "CUFF.617"; flanks "56473604-,56471516^"; structure "0,1-2^"; splice_chain ",56473515-56473465^";
chr4	juncbase	cassette	56473604	56466742	.	-	.	gene_id "cassette.711"; transcript_id "cassette.711"; gene_name "CUFF.617"; flanks "56473604-,56466742^"; structure "0,1-2^"; splice_chain ",56473515-56473465^";
chr4	juncbase	intron_retention	152065372	152065202	.	-	.	gene_id "intron_retention.989"; transcript_id "intron_retention.989"; gene_name "CUFF.667"; flanks "152065372-,152065202^"; structure "0,1^2-"; splice_chain ",152065372^152065202-";
chr4	juncbase	jcn_only_AA	120419058	120433506	.	+	.	gene_id "jcn_only_AA.1211"; transcript_id "jcn_only_AA.1211"; gene_name "CUFF.653"; flanks "120419058-,120433506^"; structure "1-,2-"; splice_chain "120420716-,120433506-";
chr4	juncbase	alternative_donor	57308026	57312861	.	+	.	gene_id "alternative_donor.1280"; transcript_id "alternative_donor.1280"; gene_name "CUFF.618"; flanks "57308026-,57312861^"; structure "1^,2^"; splice_chain "57308026^,57312543^";
chr4	juncbase	jcn_only_AD	3948353	3945099	.	-	.	gene_id "jcn_only_AD.1523"; transcript_id "jcn_only_AD.1523"; gene_name "CUFF.587"; flanks "3948353-,3945099^"; structure "1^,2^"; splice_chain "3948871^,3948353^";
chr4	juncbase	jcn_only_AD	3949817	3945099	.	-	.	gene_id "jcn_only_AD.1524"; transcript_id "jcn_only_AD.1524"; gene_name "CUFF.587"; flanks "3949817-,3945099^"; structure "1^,2^"; splice_chain "3949817^,3948871^";
chr4	juncbase	jcn_only_AD	3954838	3945099	.	-	.	gene_id "jcn_only_AD.1525"; transcript_id "jcn_only_AD.1525"; gene_name "CUFF.587"; flanks "3954838-,3945099^"; structure "1^,2^"; splice_chain "3954838^,3948871^";
chr4	juncbase	jcn_only_AD	3948496	3945099	.	-	.	gene_id "jcn_only_AD.1526"; transcript_id "jcn_only_AD.1526"; gene_name "CUFF.587"; flanks "3948496-,3945099^"; structure "1^,2^"; splice_chain "3948871^,3948496^";
chr4	juncbase	cassette	647108	647641	.	+	.	gene_id "cassette.712"; transcript_id "cassette.712"; gene_name "CUFF.579"; flanks "647108-,647641^"; structure "0,1-2^"; splice_chain ",647226-647496^";
chr4	juncbase	jcn_only_AD	120434075	120449895	.	+	.	gene_id "jcn_only_AD.1527"; transcript_id "jcn_only_AD.1527"; gene_name "CUFF.653"; flanks "120434075-,120449895^"; structure "1^,2^"; splice_chain "120434075^,120434125^";
chr4	juncbase	jcn_only_AA	124750342	124846339	.	+	.	gene_id "jcn_only_AA.1212"; transcript_id "jcn_only_AA.1212"; gene_name "CUFF.656"; flanks "124750342-,124846339^"; structure "1-,2-"; splice_chain "124784730-,124846339-";
chr4	juncbase	intron_retention	3949817	3949734	.	-	.	gene_id "intron_retention.990"; transcript_id "intron_retention.990"; gene_name ""; flanks "3949817-,3949734^"; structure "0,1^2-"; splice_chain ",3949817^3949734-";
chr4	juncbase	alternative_acceptor	120419058	120433506	.	+	.	gene_id "alternative_acceptor.924"; transcript_id "alternative_acceptor.924"; gene_name "CUFF.653"; flanks "120419058-,120433506^"; structure "1-,2-"; splice_chain "120420716-,120433506-";
chr4	juncbase	cassette	81115393	81117506	.	+	.	gene_id "cassette.713"; transcript_id "cassette.713"; gene_name "CUFF.639"; flanks "81115393-,81117506^"; structure "0,1-2^"; splice_chain ",81117167-81117278^";
chr4	juncbase	alternative_donor	6058424	6055875	.	-	.	gene_id "alternative_donor.1281"; transcript_id "alternative_donor.1281"; gene_name "CUFF.590"; flanks "6058424-,6055875^"; structure "1^,2^"; splice_chain "6058424^,6056475^";
chr4	juncbase	alternative_donor	152097686	152096826	.	-	.	gene_id "alternative_donor.1282"; transcript_id "alternative_donor.1282"; gene_name "CUFF.667"; flanks "152097686-,152096826^"; structure "1^,2^"; splice_chain "152097686^,152097677^";
chr4	juncbase	intron_retention	37848732	37848823	.	+	.	gene_id "intron_retention.991"; transcript_id "intron_retention.991"; gene_name "CUFF.607"; flanks "37848732-,37848823^"; structure "0,1^2-"; splice_chain ",37848732^37848823-";
chr4	juncbase	intron_retention	142245956	142244772	.	-	.	gene_id "intron_retention.992"; transcript_id "intron_retention.992"; gene_name "CUFF.666"; flanks "142245956-,142244772^"; structure "0,1^2-"; splice_chain ",142245956^142244772-";
chr4	juncbase	jcn_only_AA	20570627	20591267	.	+	.	gene_id "jcn_only_AA.1213"; transcript_id "jcn_only_AA.1213"; gene_name "CUFF.603"; flanks "20570627-,20591267^"; structure "1-,2-"; splice_chain "20574857-,20591267-";
chr4	juncbase	jcn_only_AA	120434125	120449895	.	+	.	gene_id "jcn_only_AA.1214"; transcript_id "jcn_only_AA.1214"; gene_name ""; flanks "120434125-,120449895^"; structure "1-,2-"; splice_chain "120440644-,120449895-";
chr4	juncbase	alternative_donor	57302094	57302428	.	+	.	gene_id "alternative_donor.1283"; transcript_id "alternative_donor.1283"; gene_name "CUFF.618"; flanks "57302094-,57302428^"; structure "1^,2^"; splice_chain "57302094^,57302141^";
chr4	juncbase	alternative_acceptor	3954900	3957051	.	-	.	gene_id "alternative_acceptor.925"; transcript_id "alternative_acceptor.925"; gene_name "CUFF.587"; flanks "3954900-,3957051^"; structure "1-,2-"; splice_chain "3956760-,3954900-";
chr4	juncbase	intron_retention	99405550	99403326	.	-	.	gene_id "intron_retention.993"; transcript_id "intron_retention.993"; gene_name "CUFF.647"; flanks "99405550-,99403326^"; structure "0,1^2-"; splice_chain ",99405550^99403326-";
chr4	juncbase	alternative_acceptor	120449944	120471534	.	+	.	gene_id "alternative_acceptor.926"; transcript_id "alternative_acceptor.926"; gene_name "CUFF.653"; flanks "120449944-,120471534^"; structure "1-,2-"; splice_chain "120464908-,120471534-";
chr4	juncbase	intron_retention	99407889	99405592	.	-	.	gene_id "intron_retention.994"; transcript_id "intron_retention.994"; gene_name ""; flanks "99407889-,99405592^"; structure "0,1^2-"; splice_chain ",99407889^99405592-";
chr4	juncbase	alternative_acceptor	74464435	74477448	.	-	.	gene_id "alternative_acceptor.927"; transcript_id "alternative_acceptor.927"; gene_name "CUFF.630"; flanks "74464435-,74477448^"; structure "1-,2-"; splice_chain "74470304-,74464435-";
chr4	juncbase	jcn_only_AD	83821230	83816000	.	-	.	gene_id "jcn_only_AD.1528"; transcript_id "jcn_only_AD.1528"; gene_name "CUFF.644,CUFF.652"; flanks "83821230-,83816000^"; structure "1^,2^"; splice_chain "83821230^,83816845^";
chr4	juncbase	alternative_acceptor	83536172	83542365	.	-	.	gene_id "alternative_acceptor.928"; transcript_id "alternative_acceptor.928"; gene_name "CUFF.643"; flanks "83536172-,83542365^"; structure "1-,2-"; splice_chain "83536234-,83536172-";
chr4	juncbase	alternative_donor	186185652	186188123	.	+	.	gene_id "alternative_donor.1284"; transcript_id "alternative_donor.1284"; gene_name "CUFF.681"; flanks "186185652-,186188123^"; structure "1^,2^"; splice_chain "186185652^,186185764^";
chr4	juncbase	jcn_only_AA	2934904	2935294	.	-	.	gene_id "jcn_only_AA.1215"; transcript_id "jcn_only_AA.1215"; gene_name "CUFF.584"; flanks "2934904-,2935294^"; structure "1-,2-"; splice_chain "2934936-,2934904-";
chr4	juncbase	intron_retention	165675327	165675463	.	+	.	gene_id "intron_retention.995"; transcript_id "intron_retention.995"; gene_name "CUFF.674"; flanks "165675327-,165675463^"; structure "0,1^2-"; splice_chain ",165675327^165675463-";
chr4	juncbase	cassette	3954838	3949947	.	-	.	gene_id "cassette.714"; transcript_id "cassette.714"; gene_name "CUFF.587"; flanks "3954838-,3949947^"; structure "0,1-2^"; splice_chain ",3952946-3952866^";
chr4	juncbase	alternative_acceptor	70513413	70518906	.	-	.	gene_id "alternative_acceptor.929"; transcript_id "alternative_acceptor.929"; gene_name "CUFF.628"; flanks "70513413-,70518906^"; structure "1-,2-"; splice_chain "70513416-,70513413-";
chr4	juncbase	jcn_only_AA	2934136	2934327	.	-	.	gene_id "jcn_only_AA.1216"; transcript_id "jcn_only_AA.1216"; gene_name "CUFF.584"; flanks "2934136-,2934327^"; structure "1-,2-"; splice_chain "2934239-,2934136-";
chr4	juncbase	alternative_acceptor	2934417	2934833	.	-	.	gene_id "alternative_acceptor.930"; transcript_id "alternative_acceptor.930"; gene_name "CUFF.584"; flanks "2934417-,2934833^"; structure "1-,2-"; splice_chain "2934485-,2934417-";
chr4	juncbase	jcn_only_AA	20525800	20530572	.	+	.	gene_id "jcn_only_AA.1217"; transcript_id "jcn_only_AA.1217"; gene_name "CUFF.603"; flanks "20525800-,20530572^"; structure "1-,2-"; splice_chain "20526772-,20530572-";
chr4	juncbase	alternative_donor	74486156	74477546	.	-	.	gene_id "alternative_donor.1285"; transcript_id "alternative_donor.1285"; gene_name ""; flanks "74486156-,74477546^"; structure "1^,2^"; splice_chain "74486156^,74486005^";
chr4	juncbase	cassette	152069074	152065202	.	-	.	gene_id "cassette.715"; transcript_id "cassette.715"; gene_name "CUFF.667"; flanks "152069074-,152065202^"; structure "0,1-2^"; splice_chain ",152065440-152065372^";
chr4	juncbase	cassette	74450897	74447585	.	-	.	gene_id "cassette.716"; transcript_id "cassette.716"; gene_name "CUFF.630"; flanks "74450897-,74447585^"; structure "0,1-2^"; splice_chain ",74448007-74447906^";
chr4	juncbase	cassette	152108575	152100549	.	-	.	gene_id "cassette.717"; transcript_id "cassette.717"; gene_name "CUFF.667"; flanks "152108575-,152100549^"; structure "0,1-2^"; splice_chain ",152102881-152102841^";
chr4	juncbase	intron_retention	99405536	99403326	.	-	.	gene_id "intron_retention.996"; transcript_id "intron_retention.996"; gene_name "CUFF.647"; flanks "99405536-,99403326^"; structure "0,1^2-"; splice_chain ",99405536^99403326-";
chr4	juncbase	cassette	77172973	77184857	.	+	.	gene_id "cassette.718"; transcript_id "cassette.718"; gene_name "CUFF.633"; flanks "77172973-,77184857^"; structure "0,1-2^"; splice_chain ",77177331-77177676^";
chr4	juncbase	jcn_only_AA	69071815	69083624	.	-	.	gene_id "jcn_only_AA.1218"; transcript_id "jcn_only_AA.1218"; gene_name "CUFF.626"; flanks "69071815-,69083624^"; structure "1-,2-"; splice_chain "69078195-,69071815-";
chr4	juncbase	cassette	37841881	37847254	.	+	.	gene_id "cassette.719"; transcript_id "cassette.719"; gene_name "CUFF.607"; flanks "37841881-,37847254^"; structure "0,1-2^"; splice_chain ",37845985-37846174^";
chr4	juncbase	intron_retention	83821487	83821376	.	-	.	gene_id "intron_retention.997"; transcript_id "intron_retention.997"; gene_name ""; flanks "83821487-,83821376^"; structure "0,1^2-"; splice_chain ",83821487^83821376-";
chr4	juncbase	jcn_only_AD	83821230	83819215	.	-	.	gene_id "jcn_only_AD.1529"; transcript_id "jcn_only_AD.1529"; gene_name "CUFF.587,CUFF.644"; flanks "83821230-,83819215^"; structure "1^,2^"; splice_chain "83821230^,83820866^";
chr4	juncbase	jcn_only_AD	3948353	3945099	.	-	.	gene_id "jcn_only_AD.1530"; transcript_id "jcn_only_AD.1530"; gene_name "CUFF.587"; flanks "3948353-,3945099^"; structure "1^,2^"; splice_chain "3949817^,3948353^";
chr4	juncbase	jcn_only_AD	3954838	3945099	.	-	.	gene_id "jcn_only_AD.1531"; transcript_id "jcn_only_AD.1531"; gene_name "CUFF.587"; flanks "3954838-,3945099^"; structure "1^,2^"; splice_chain "3954838^,3949817^";
chr4	juncbase	jcn_only_AD	3948871	3945099	.	-	.	gene_id "jcn_only_AD.1532"; transcript_id "jcn_only_AD.1532"; gene_name "CUFF.587"; flanks "3948871-,3945099^"; structure "1^,2^"; splice_chain "3949817^,3948871^";
chr4	juncbase	jcn_only_AD	3948496	3945099	.	-	.	gene_id "jcn_only_AD.1533"; transcript_id "jcn_only_AD.1533"; gene_name "CUFF.587"; flanks "3948496-,3945099^"; structure "1^,2^"; splice_chain "3949817^,3948496^";
chr4	juncbase	intron_retention	657659	657903	.	+	.	gene_id "intron_retention.998"; transcript_id "intron_retention.998"; gene_name "CUFF.579"; flanks "657659-,657903^"; structure "0,1^2-"; splice_chain ",657659^657903-";
chr4	juncbase	cassette	77116860	77102254	.	-	.	gene_id "cassette.720"; transcript_id "cassette.720"; gene_name "CUFF.631"; flanks "77116860-,77102254^"; structure "0,1-2^"; splice_chain ",77105933-77105810^";
chr4	juncbase	jcn_only_AA	2934417	2934833	.	-	.	gene_id "jcn_only_AA.1219"; transcript_id "jcn_only_AA.1219"; gene_name "CUFF.584"; flanks "2934417-,2934833^"; structure "1-,2-"; splice_chain "2934485-,2934417-";
chr4	juncbase	cassette	70464964	70460967	.	-	.	gene_id "cassette.721"; transcript_id "cassette.721"; gene_name "CUFF.628"; flanks "70464964-,70460967^"; structure "0,1-2^"; splice_chain ",70462099-70461968^";
chr4	juncbase	cassette	186267804	186274639	.	+	.	gene_id "cassette.722"; transcript_id "cassette.722"; gene_name "CUFF.681"; flanks "186267804-,186274639^"; structure "0,1-2^"; splice_chain ",186272599-186272763^";
chr4	juncbase	alternative_acceptor	162954807	163032423	.	-	.	gene_id "alternative_acceptor.931"; transcript_id "alternative_acceptor.931"; gene_name "CUFF.673"; flanks "162954807-,163032423^"; structure "1-,2-"; splice_chain "162954810-,162954807-";
chr4	juncbase	intron_retention	120419058	120433506	.	+	.	gene_id "intron_retention.999"; transcript_id "intron_retention.999"; gene_name "CUFF.653"; flanks "120419058-,120433506^"; structure "0,1^2-"; splice_chain ",120419058^120433506-";
chr4	juncbase	cassette	20490605	20493384	.	+	.	gene_id "cassette.723"; transcript_id "cassette.723"; gene_name "CUFF.603"; flanks "20490605-,20493384^"; structure "0,1-2^"; splice_chain ",20492426-20492437^";
chr4	juncbase	alternative_acceptor	20525800	20530572	.	+	.	gene_id "alternative_acceptor.932"; transcript_id "alternative_acceptor.932"; gene_name "CUFF.603"; flanks "20525800-,20530572^"; structure "1-,2-"; splice_chain "20526772-,20530572-";
chr4	juncbase	intron_retention	2933552	2933390	.	-	.	gene_id "intron_retention.1000"; transcript_id "intron_retention.1000"; gene_name "CUFF.584"; flanks "2933552-,2933390^"; structure "0,1^2-"; splice_chain ",2933552^2933390-";
chr4	juncbase	cassette	162459318	162421286	.	-	.	gene_id "cassette.724"; transcript_id "cassette.724"; gene_name "CUFF.673"; flanks "162459318-,162421286^"; structure "0,1-2^"; splice_chain ",162431576-162431550^";
chr4	juncbase	cassette	99407889	99403326	.	-	.	gene_id "cassette.725"; transcript_id "cassette.725"; gene_name "CUFF.647"; flanks "99407889-,99403326^"; structure "0,1-2^"; splice_chain ",99405749-99405550^";
chr4	juncbase	intron_retention	83821230	83816000	.	-	.	gene_id "intron_retention.1001"; transcript_id "intron_retention.1001"; gene_name "CUFF.644"; flanks "83821230-,83816000^"; structure "0,1^2-"; splice_chain ",83821230^83816000-";
chr4	juncbase	intron_retention	57302141	57302428	.	+	.	gene_id "intron_retention.1002"; transcript_id "intron_retention.1002"; gene_name ""; flanks "57302141-,57302428^"; structure "0,1^2-"; splice_chain ",57302141^57302428-";
chr4	juncbase	jcn_only_AD	120384134	120414488	.	+	.	gene_id "jcn_only_AD.1534"; transcript_id "jcn_only_AD.1534"; gene_name "CUFF.653"; flanks "120384134-,120414488^"; structure "1^,2^"; splice_chain "120384134^,120409872^";
chr4	juncbase	intron_retention	107845702	107845361	.	-	.	gene_id "intron_retention.1003"; transcript_id "intron_retention.1003"; gene_name "CUFF.649"; flanks "107845702-,107845361^"; structure "0,1^2-"; splice_chain ",107845702^107845361-";
chr4	juncbase	jcn_only_AA	645877	647641	.	+	.	gene_id "jcn_only_AA.1220"; transcript_id "jcn_only_AA.1220"; gene_name ""; flanks "645877-,647641^"; structure "1-,2-"; splice_chain "646285-,647641-";
chr4	juncbase	intron_retention	2933552	2933192	.	-	.	gene_id "intron_retention.1004"; transcript_id "intron_retention.1004"; gene_name ""; flanks "2933552-,2933192^"; structure "0,1^2-"; splice_chain ",2933552^2933192-";
chr4	juncbase	alternative_acceptor	69071815	69083624	.	-	.	gene_id "alternative_acceptor.933"; transcript_id "alternative_acceptor.933"; gene_name "CUFF.626"; flanks "69071815-,69083624^"; structure "1-,2-"; splice_chain "69078195-,69071815-";
chr4	juncbase	alternative_acceptor	20570627	20591267	.	+	.	gene_id "alternative_acceptor.934"; transcript_id "alternative_acceptor.934"; gene_name "CUFF.603"; flanks "20570627-,20591267^"; structure "1-,2-"; splice_chain "20574857-,20591267-";
chr4	juncbase	jcn_only_AD	124582988	124750250	.	+	.	gene_id "jcn_only_AD.1535"; transcript_id "jcn_only_AD.1535"; gene_name "CUFF.656"; flanks "124582988-,124750250^"; structure "1^,2^"; splice_chain "124582988^,124695530^";
chr4	juncbase	jcn_only_AA	36152666	36160352	.	-	.	gene_id "jcn_only_AA.1221"; transcript_id "jcn_only_AA.1221"; gene_name "CUFF.605"; flanks "36152666-,36160352^"; structure "1-,2-"; splice_chain "36159172-,36152666-";
chr4	juncbase	alternative_donor	69071753	69057034	.	-	.	gene_id "alternative_donor.1286"; transcript_id "alternative_donor.1286"; gene_name "CUFF.595"; flanks "69071753-,69057034^"; structure "1^,2^"; splice_chain "69071753^,69057125^";
chr4	juncbase	cassette	56496569	56475346	.	-	.	gene_id "cassette.726"; transcript_id "cassette.726"; gene_name "CUFF.617"; flanks "56496569-,56475346^"; structure "0,1-2^"; splice_chain ",56482552-56482505^";
chr4	juncbase	cassette	77192921	77230297	.	+	.	gene_id "cassette.727"; transcript_id "cassette.727"; gene_name "CUFF.633"; flanks "77192921-,77230297^"; structure "0,1-2^"; splice_chain ",77211055-77211213^";
chr4	juncbase	alternative_acceptor	120384134	120414488	.	+	.	gene_id "alternative_acceptor.935"; transcript_id "alternative_acceptor.935"; gene_name "CUFF.653"; flanks "120384134-,120414488^"; structure "1-,2-"; splice_chain "120409800-,120414488-";
chr4	juncbase	alternative_acceptor	120434125	120449895	.	+	.	gene_id "alternative_acceptor.936"; transcript_id "alternative_acceptor.936"; gene_name ""; flanks "120434125-,120449895^"; structure "1-,2-"; splice_chain "120440644-,120449895-";
chr4	juncbase	jcn_only_AD	120449944	120471534	.	+	.	gene_id "jcn_only_AD.1536"; transcript_id "jcn_only_AD.1536"; gene_name "CUFF.653"; flanks "120449944-,120471534^"; structure "1^,2^"; splice_chain "120449944^,120465000^";
chr4	juncbase	intron_retention	1713928	1713654	.	-	.	gene_id "intron_retention.1005"; transcript_id "intron_retention.1005"; gene_name "CUFF.581"; flanks "1713928-,1713654^"; structure "0,1^2-"; splice_chain ",1713928^1713654-";
chr4	juncbase	alternative_acceptor	1126228	1126515	.	+	.	gene_id "alternative_acceptor.937"; transcript_id "alternative_acceptor.937"; gene_name ""; flanks "1126228-,1126515^"; structure "1-,2-"; splice_chain "1126497-,1126515-";
chr4	juncbase	intron_retention	77987402	77977253	.	-	.	gene_id "intron_retention.1006"; transcript_id "intron_retention.1006"; gene_name ""; flanks "77987402-,77977253^"; structure "0,1^2-"; splice_chain ",77987402^77977253-";
chr4	juncbase	alternative_acceptor	57308026	57312861	.	+	.	gene_id "alternative_acceptor.938"; transcript_id "alternative_acceptor.938"; gene_name "CUFF.603,CUFF.618"; flanks "57308026-,57312861^"; structure "1-,2-"; splice_chain "57312523-,57312861-";
chr4	juncbase	alternative_donor	186253867	186260533	.	+	.	gene_id "alternative_donor.1287"; transcript_id "alternative_donor.1287"; gene_name "CUFF.681"; flanks "186253867-,186260533^"; structure "1^,2^"; splice_chain "186253867^,186253913^";
chr4	juncbase	alternative_acceptor	6055875	6058424	.	-	.	gene_id "alternative_acceptor.939"; transcript_id "alternative_acceptor.939"; gene_name "CUFF.590"; flanks "6055875-,6058424^"; structure "1-,2-"; splice_chain "6056530-,6055875-";
chr4	juncbase	intron_retention	2933282	2932877	.	-	.	gene_id "intron_retention.1007"; transcript_id "intron_retention.1007"; gene_name ""; flanks "2933282-,2932877^"; structure "0,1^2-"; splice_chain ",2933282^2932877-";
chr4	juncbase	intron_retention	99407889	99405749	.	-	.	gene_id "intron_retention.1008"; transcript_id "intron_retention.1008"; gene_name "CUFF.647"; flanks "99407889-,99405749^"; structure "0,1^2-"; splice_chain ",99407889^99405749-";
chr4	juncbase	jcn_only_AD	57302094	57302428	.	+	.	gene_id "jcn_only_AD.1537"; transcript_id "jcn_only_AD.1537"; gene_name "CUFF.618"; flanks "57302094-,57302428^"; structure "1^,2^"; splice_chain "57302094^,57302141^";
chr4	juncbase	cassette	3952866	3949947	.	-	.	gene_id "cassette.728"; transcript_id "cassette.728"; gene_name "CUFF.587"; flanks "3952866-,3949947^"; structure "0,1-2^"; splice_chain ",3951319-3951175^";
chr4	juncbase	cassette	77192921	77230297	.	+	.	gene_id "cassette.729"; transcript_id "cassette.729"; gene_name "CUFF.633"; flanks "77192921-,77230297^"; structure "0,1-2^"; splice_chain ",77199222-77199377^";
chr4	juncbase	jcn_only_AD	162680563	162577646	.	-	.	gene_id "jcn_only_AD.1538"; transcript_id "jcn_only_AD.1538"; gene_name "CUFF.592,CUFF.673"; flanks "162680563-,162577646^"; structure "1^,2^"; splice_chain "162680563^,162585968^";
chr3	juncbase	alternative_donor	73482790	73453546	.	-	.	gene_id "alternative_donor.1288"; transcript_id "alternative_donor.1288"; gene_name "CUFF.487"; flanks "73482790-,73453546^"; structure "1^,2^"; splice_chain "73651505^,73482790^";
chr3	juncbase	alternative_donor	73610602	73453546	.	-	.	gene_id "alternative_donor.1289"; transcript_id "alternative_donor.1289"; gene_name "CUFF.487"; flanks "73610602-,73453546^"; structure "1^,2^"; splice_chain "73651505^,73610602^";
chr3	juncbase	alternative_donor	73523606	73453546	.	-	.	gene_id "alternative_donor.1290"; transcript_id "alternative_donor.1290"; gene_name "CUFF.487"; flanks "73523606-,73453546^"; structure "1^,2^"; splice_chain "73651505^,73523606^";
chr3	juncbase	alternative_donor	73605851	73453546	.	-	.	gene_id "alternative_donor.1291"; transcript_id "alternative_donor.1291"; gene_name "CUFF.487"; flanks "73605851-,73453546^"; structure "1^,2^"; splice_chain "73651505^,73605851^";
chr3	juncbase	alternative_donor	73618302	73453546	.	-	.	gene_id "alternative_donor.1292"; transcript_id "alternative_donor.1292"; gene_name "CUFF.487"; flanks "73618302-,73453546^"; structure "1^,2^"; splice_chain "73651505^,73618302^";
chr3	juncbase	alternative_acceptor	8775676	8819163	.	+	.	gene_id "alternative_acceptor.940"; transcript_id "alternative_acceptor.940"; gene_name ""; flanks "8775676-,8819163^"; structure "1-,2-"; splice_chain "8787212-,8819163-";
chr3	juncbase	cassette	132948195	133098596	.	+	.	gene_id "cassette.730"; transcript_id "cassette.730"; gene_name "CUFF.543"; flanks "132948195-,133098596^"; structure "0,1-2^"; splice_chain ",133097186-133097400^";
chr3	juncbase	jcn_only_AD	38061679	38058210	.	-	.	gene_id "jcn_only_AD.1539"; transcript_id "jcn_only_AD.1539"; gene_name "CUFF.455"; flanks "38061679-,38058210^"; structure "1^,2^"; splice_chain "38061679^,38060461^";
chr3	juncbase	cassette	125786790	125752521	.	-	.	gene_id "cassette.731"; transcript_id "cassette.731"; gene_name "CUFF.535"; flanks "125786790-,125752521^"; structure "0,1-2^"; splice_chain ",125769893-125769786^";
chr3	juncbase	alternative_acceptor	186769134	186790637	.	+	.	gene_id "alternative_acceptor.941"; transcript_id "alternative_acceptor.941"; gene_name "CUFF.524,CUFF.569"; flanks "186769134-,186790637^"; structure "1-,2-"; splice_chain "186782308-,186790637-";
chr3	juncbase	jcn_only_AA	186769134	186790637	.	+	.	gene_id "jcn_only_AA.1222"; transcript_id "jcn_only_AA.1222"; gene_name "CUFF.524,CUFF.569"; flanks "186769134-,186790637^"; structure "1-,2-"; splice_chain "186782308-,186790637-";
chr3	juncbase	jcn_only_AA	107586272	107596160	.	-	.	gene_id "jcn_only_AA.1223"; transcript_id "jcn_only_AA.1223"; gene_name ""; flanks "107586272-,107596160^"; structure "1-,2-"; splice_chain "107595033-,107586272-";
chr3	juncbase	jcn_only_AA	107595378	107596160	.	-	.	gene_id "jcn_only_AA.1224"; transcript_id "jcn_only_AA.1224"; gene_name ""; flanks "107595378-,107596160^"; structure "1-,2-"; splice_chain "107595378-,107595033-";
chr3	juncbase	jcn_only_AD	186660215	186681573	.	+	.	gene_id "jcn_only_AD.1540"; transcript_id "jcn_only_AD.1540"; gene_name "CUFF.569"; flanks "186660215-,186681573^"; structure "1^,2^"; splice_chain "186649183^,186660215^";
chr3	juncbase	jcn_only_AD	186648623	186681573	.	+	.	gene_id "jcn_only_AD.1541"; transcript_id "jcn_only_AD.1541"; gene_name "CUFF.569"; flanks "186648623-,186681573^"; structure "1^,2^"; splice_chain "186648623^,186649183^";
chr3	juncbase	jcn_only_AD	186648927	186681573	.	+	.	gene_id "jcn_only_AD.1542"; transcript_id "jcn_only_AD.1542"; gene_name "CUFF.569"; flanks "186648927-,186681573^"; structure "1^,2^"; splice_chain "186648927^,186649183^";
chr3	juncbase	jcn_only_AD	186666726	186681573	.	+	.	gene_id "jcn_only_AD.1543"; transcript_id "jcn_only_AD.1543"; gene_name "CUFF.569"; flanks "186666726-,186681573^"; structure "1^,2^"; splice_chain "186649183^,186666726^";
chr3	juncbase	jcn_only_AA	107595033	107596749	.	-	.	gene_id "jcn_only_AA.1225"; transcript_id "jcn_only_AA.1225"; gene_name ""; flanks "107595033-,107596749^"; structure "1-,2-"; splice_chain "107595033-,107586424-";
chr3	juncbase	jcn_only_AA	107591873	107596749	.	-	.	gene_id "jcn_only_AA.1226"; transcript_id "jcn_only_AA.1226"; gene_name ""; flanks "107591873-,107596749^"; structure "1-,2-"; splice_chain "107591873-,107586424-";
chr3	juncbase	jcn_only_AA	107596344	107596749	.	-	.	gene_id "jcn_only_AA.1227"; transcript_id "jcn_only_AA.1227"; gene_name ""; flanks "107596344-,107596749^"; structure "1-,2-"; splice_chain "107596344-,107586424-";
chr3	juncbase	intron_retention	33481826	33481417	.	-	.	gene_id "intron_retention.1009"; transcript_id "intron_retention.1009"; gene_name ""; flanks "33481826-,33481417^"; structure "0,1^2-"; splice_chain ",33481826^33481417-";
chr3	juncbase	jcn_only_AD	186660215	186681573	.	+	.	gene_id "jcn_only_AD.1544"; transcript_id "jcn_only_AD.1544"; gene_name "CUFF.569"; flanks "186660215-,186681573^"; structure "1^,2^"; splice_chain "186648623^,186660215^";
chr3	juncbase	jcn_only_AD	186649183	186681573	.	+	.	gene_id "jcn_only_AD.1545"; transcript_id "jcn_only_AD.1545"; gene_name "CUFF.569"; flanks "186649183-,186681573^"; structure "1^,2^"; splice_chain "186648623^,186649183^";
chr3	juncbase	jcn_only_AD	186648927	186681573	.	+	.	gene_id "jcn_only_AD.1546"; transcript_id "jcn_only_AD.1546"; gene_name "CUFF.569"; flanks "186648927-,186681573^"; structure "1^,2^"; splice_chain "186648623^,186648927^";
chr3	juncbase	jcn_only_AD	186666726	186681573	.	+	.	gene_id "jcn_only_AD.1547"; transcript_id "jcn_only_AD.1547"; gene_name "CUFF.569"; flanks "186666726-,186681573^"; structure "1^,2^"; splice_chain "186648623^,186666726^";
chr3	juncbase	jcn_only_AD	107596749	107595033	.	-	.	gene_id "jcn_only_AD.1548"; transcript_id "jcn_only_AD.1548"; gene_name "CUFF.466"; flanks "107596749-,107595033^"; structure "1^,2^"; splice_chain "107596749^,107595282^";
chr3	juncbase	jcn_only_AD	107595302	107595033	.	-	.	gene_id "jcn_only_AD.1549"; transcript_id "jcn_only_AD.1549"; gene_name "CUFF.466"; flanks "107595302-,107595033^"; structure "1^,2^"; splice_chain "107595302^,107595282^";
chr3	juncbase	jcn_only_AD	107596160	107595033	.	-	.	gene_id "jcn_only_AD.1550"; transcript_id "jcn_only_AD.1550"; gene_name "CUFF.466"; flanks "107596160-,107595033^"; structure "1^,2^"; splice_chain "107596160^,107595282^";
chr3	juncbase	jcn_only_AD	73482790	73453546	.	-	.	gene_id "jcn_only_AD.1551"; transcript_id "jcn_only_AD.1551"; gene_name "CUFF.487"; flanks "73482790-,73453546^"; structure "1^,2^"; splice_chain "73523606^,73482790^";
chr3	juncbase	jcn_only_AD	73610602	73453546	.	-	.	gene_id "jcn_only_AD.1552"; transcript_id "jcn_only_AD.1552"; gene_name "CUFF.487"; flanks "73610602-,73453546^"; structure "1^,2^"; splice_chain "73610602^,73523606^";
chr3	juncbase	jcn_only_AD	73651505	73453546	.	-	.	gene_id "jcn_only_AD.1553"; transcript_id "jcn_only_AD.1553"; gene_name "CUFF.487"; flanks "73651505-,73453546^"; structure "1^,2^"; splice_chain "73651505^,73523606^";
chr3	juncbase	jcn_only_AD	73605851	73453546	.	-	.	gene_id "jcn_only_AD.1554"; transcript_id "jcn_only_AD.1554"; gene_name "CUFF.487"; flanks "73605851-,73453546^"; structure "1^,2^"; splice_chain "73605851^,73523606^";
chr3	juncbase	jcn_only_AD	73618302	73453546	.	-	.	gene_id "jcn_only_AD.1555"; transcript_id "jcn_only_AD.1555"; gene_name "CUFF.487"; flanks "73618302-,73453546^"; structure "1^,2^"; splice_chain "73618302^,73523606^";
chr3	juncbase	jcn_only_AA	19992553	20017093	.	+	.	gene_id "jcn_only_AA.1228"; transcript_id "jcn_only_AA.1228"; gene_name "CUFF.432"; flanks "19992553-,20017093^"; structure "1-,2-"; splice_chain "20012040-,20017093-";
chr3	juncbase	jcn_only_AA	19992553	20017135	.	+	.	gene_id "jcn_only_AA.1229"; transcript_id "jcn_only_AA.1229"; gene_name "CUFF.432"; flanks "19992553-,20017135^"; structure "1-,2-"; splice_chain "20012040-,20017135-";
chr3	juncbase	jcn_only_AA	19992553	20017079	.	+	.	gene_id "jcn_only_AA.1230"; transcript_id "jcn_only_AA.1230"; gene_name "CUFF.432"; flanks "19992553-,20017079^"; structure "1-,2-"; splice_chain "20012040-,20017079-";
chr3	juncbase	cassette	132764864	132948110	.	+	.	gene_id "cassette.732"; transcript_id "cassette.732"; gene_name "CUFF.543"; flanks "132764864-,132948110^"; structure "0,1-2^"; splice_chain ",132793159-132793202^";
chr3	juncbase	jcn_only_AD	19989013	19992298	.	+	.	gene_id "jcn_only_AD.1556"; transcript_id "jcn_only_AD.1556"; gene_name "CUFF.432"; flanks "19989013-,19992298^"; structure "1^,2^"; splice_chain "19989013^,19989355^";
chr3	juncbase	alternative_acceptor	107572901	107573977	.	-	.	gene_id "alternative_acceptor.942"; transcript_id "alternative_acceptor.942"; gene_name "CUFF.504"; flanks "107572901-,107573977^"; structure "1-,2-"; splice_chain "107573541-,107572901-";
chr3	juncbase	alternative_acceptor	107572806	107573977	.	-	.	gene_id "alternative_acceptor.943"; transcript_id "alternative_acceptor.943"; gene_name "CUFF.504"; flanks "107572806-,107573977^"; structure "1-,2-"; splice_chain "107573541-,107572806-";
chr3	juncbase	jcn_only_AA	120352175	120357302	.	-	.	gene_id "jcn_only_AA.1231"; transcript_id "jcn_only_AA.1231"; gene_name "CUFF.522"; flanks "120352175-,120357302^"; structure "1-,2-"; splice_chain "120352437-,120352175-";
chr3	juncbase	alternative_donor	178866007	178916538	.	+	.	gene_id "alternative_donor.1293"; transcript_id "alternative_donor.1293"; gene_name "CUFF.566"; flanks "178866007-,178916538^"; structure "1^,2^"; splice_chain "178866007^,178867504^";
chr3	juncbase	alternative_donor	108475906	108475435	.	-	.	gene_id "alternative_donor.1294"; transcript_id "alternative_donor.1294"; gene_name "CUFF.466,CUFF.507"; flanks "108475906-,108475435^"; structure "1^,2^"; splice_chain "108475906^,108475667^";
chr3	juncbase	jcn_only_AD	156262097	156261058	.	-	.	gene_id "jcn_only_AD.1557"; transcript_id "jcn_only_AD.1557"; gene_name "CUFF.561"; flanks "156262097-,156261058^"; structure "1^,2^"; splice_chain "156262097^,156262083^";
chr3	juncbase	cassette	25660145	25657077	.	-	.	gene_id "cassette.733"; transcript_id "cassette.733"; gene_name "CUFF.438"; flanks "25660145-,25657077^"; structure "0,1-2^"; splice_chain ",25660000-25659909^";
chr3	juncbase	jcn_only_AA	49354911	49362135	.	-	.	gene_id "jcn_only_AA.1232"; transcript_id "jcn_only_AA.1232"; gene_name "CUFF.466"; flanks "49354911-,49362135^"; structure "1-,2-"; splice_chain "49354911-,49350046-";
chr3	juncbase	jcn_only_AA	49349087	49362135	.	-	.	gene_id "jcn_only_AA.1233"; transcript_id "jcn_only_AA.1233"; gene_name "CUFF.466"; flanks "49349087-,49362135^"; structure "1-,2-"; splice_chain "49350046-,49349087-";
chr3	juncbase	jcn_only_AA	49348170	49362135	.	-	.	gene_id "jcn_only_AA.1234"; transcript_id "jcn_only_AA.1234"; gene_name "CUFF.466"; flanks "49348170-,49362135^"; structure "1-,2-"; splice_chain "49350046-,49348170-";
chr3	juncbase	alternative_acceptor	107576049	107586158	.	-	.	gene_id "alternative_acceptor.944"; transcript_id "alternative_acceptor.944"; gene_name ""; flanks "107576049-,107586158^"; structure "1-,2-"; splice_chain "107585600-,107576049-";
chr3	juncbase	alternative_acceptor	107578108	107586158	.	-	.	gene_id "alternative_acceptor.945"; transcript_id "alternative_acceptor.945"; gene_name ""; flanks "107578108-,107586158^"; structure "1-,2-"; splice_chain "107585600-,107578108-";
chr3	juncbase	alternative_donor	107596749	107586424	.	-	.	gene_id "alternative_donor.1295"; transcript_id "alternative_donor.1295"; gene_name ""; flanks "107596749-,107586424^"; structure "1^,2^"; splice_chain "107596749^,107591173^";
chr3	juncbase	alternative_donor	107591815	107586424	.	-	.	gene_id "alternative_donor.1296"; transcript_id "alternative_donor.1296"; gene_name ""; flanks "107591815-,107586424^"; structure "1^,2^"; splice_chain "107591815^,107591173^";
chr3	juncbase	alternative_donor	125032152	125007072	.	-	.	gene_id "alternative_donor.1297"; transcript_id "alternative_donor.1297"; gene_name "CUFF.528,CUFF.542"; flanks "125032152-,125007072^"; structure "1^,2^"; splice_chain "125032152^,125011309^";
chr3	juncbase	jcn_only_AD	71778225	71777774	.	-	.	gene_id "jcn_only_AD.1558"; transcript_id "jcn_only_AD.1558"; gene_name "CUFF.483"; flanks "71778225-,71777774^"; structure "1^,2^"; splice_chain "71803795^,71778225^";
chr3	juncbase	jcn_only_AD	71802614	71777774	.	-	.	gene_id "jcn_only_AD.1559"; transcript_id "jcn_only_AD.1559"; gene_name "CUFF.483"; flanks "71802614-,71777774^"; structure "1^,2^"; splice_chain "71803795^,71802614^";
chr3	juncbase	jcn_only_AD	71803366	71777774	.	-	.	gene_id "jcn_only_AD.1560"; transcript_id "jcn_only_AD.1560"; gene_name "CUFF.483"; flanks "71803366-,71777774^"; structure "1^,2^"; splice_chain "71803795^,71803366^";
chr3	juncbase	alternative_donor	124953144	124951498	.	-	.	gene_id "alternative_donor.1298"; transcript_id "alternative_donor.1298"; gene_name "CUFF.528"; flanks "124953144-,124951498^"; structure "1^,2^"; splice_chain "124953144^,124951953^";
chr3	juncbase	cassette	27204192	27183073	.	-	.	gene_id "cassette.734"; transcript_id "cassette.734"; gene_name "CUFF.441"; flanks "27204192-,27183073^"; structure "0,1-2^"; splice_chain ",27204092-27203952^";
chr3	juncbase	cassette	107572720	107567965	.	-	.	gene_id "cassette.735"; transcript_id "cassette.735"; gene_name "CUFF.504"; flanks "107572720-,107567965^"; structure "0,1-2^"; splice_chain ",107568818-107568670^";
chr3	juncbase	intron_retention	38049726	38049654	.	-	.	gene_id "intron_retention.1010"; transcript_id "intron_retention.1010"; gene_name "CUFF.455"; flanks "38049726-,38049654^"; structure "0,1^2-"; splice_chain ",38049726^38049654-";
chr3	juncbase	cassette	127294783	127294108	.	-	.	gene_id "cassette.736"; transcript_id "cassette.736"; gene_name "CUFF.542"; flanks "127294783-,127294108^"; structure "0,1-2^"; splice_chain ",127294348-127294246^";
chr3	juncbase	cassette	127294592	127294108	.	-	.	gene_id "cassette.737"; transcript_id "cassette.737"; gene_name "CUFF.542"; flanks "127294592-,127294108^"; structure "0,1-2^"; splice_chain ",127294348-127294246^";
chr3	juncbase	jcn_only_AD	156271444	156266792	.	-	.	gene_id "jcn_only_AD.1561"; transcript_id "jcn_only_AD.1561"; gene_name "CUFF.561"; flanks "156271444-,156266792^"; structure "1^,2^"; splice_chain "156271444^,156269187^";
chr3	juncbase	intron_retention	38050533	38050127	.	-	.	gene_id "intron_retention.1011"; transcript_id "intron_retention.1011"; gene_name "CUFF.455"; flanks "38050533-,38050127^"; structure "0,1^2-"; splice_chain ",38050533^38050127-";
chr3	juncbase	alternative_donor	186660215	186681573	.	+	.	gene_id "alternative_donor.1299"; transcript_id "alternative_donor.1299"; gene_name "CUFF.569"; flanks "186660215-,186681573^"; structure "1^,2^"; splice_chain "186649183^,186660215^";
chr3	juncbase	alternative_donor	186648623	186681573	.	+	.	gene_id "alternative_donor.1300"; transcript_id "alternative_donor.1300"; gene_name "CUFF.569"; flanks "186648623-,186681573^"; structure "1^,2^"; splice_chain "186648623^,186649183^";
chr3	juncbase	alternative_donor	186648927	186681573	.	+	.	gene_id "alternative_donor.1301"; transcript_id "alternative_donor.1301"; gene_name "CUFF.569"; flanks "186648927-,186681573^"; structure "1^,2^"; splice_chain "186648927^,186649183^";
chr3	juncbase	alternative_donor	186666726	186681573	.	+	.	gene_id "alternative_donor.1302"; transcript_id "alternative_donor.1302"; gene_name "CUFF.569"; flanks "186666726-,186681573^"; structure "1^,2^"; splice_chain "186649183^,186666726^";
chr3	juncbase	alternative_donor	119188105	119188667	.	+	.	gene_id "alternative_donor.1303"; transcript_id "alternative_donor.1303"; gene_name "CUFF.513"; flanks "119188105-,119188667^"; structure "1^,2^"; splice_chain "119187853^,119188105^";
chr3	juncbase	alternative_donor	119187953	119188667	.	+	.	gene_id "alternative_donor.1304"; transcript_id "alternative_donor.1304"; gene_name "CUFF.513"; flanks "119187953-,119188667^"; structure "1^,2^"; splice_chain "119187853^,119187953^";
chr3	juncbase	alternative_acceptor	107591327	107591815	.	-	.	gene_id "alternative_acceptor.946"; transcript_id "alternative_acceptor.946"; gene_name "CUFF.504"; flanks "107591327-,107591815^"; structure "1-,2-"; splice_chain "107591327-,107586272-";
chr3	juncbase	alternative_acceptor	107576049	107591815	.	-	.	gene_id "alternative_acceptor.947"; transcript_id "alternative_acceptor.947"; gene_name "CUFF.504"; flanks "107576049-,107591815^"; structure "1-,2-"; splice_chain "107586272-,107576049-";
chr3	juncbase	alternative_acceptor	107586424	107591815	.	-	.	gene_id "alternative_acceptor.948"; transcript_id "alternative_acceptor.948"; gene_name "CUFF.504"; flanks "107586424-,107591815^"; structure "1-,2-"; splice_chain "107586424-,107586272-";
chr3	juncbase	intron_retention	33438237	33437772	.	-	.	gene_id "intron_retention.1012"; transcript_id "intron_retention.1012"; gene_name "CUFF.452"; flanks "33438237-,33437772^"; structure "0,1^2-"; splice_chain ",33438237^33437772-";
chr3	juncbase	intron_retention	124951953	124951498	.	-	.	gene_id "intron_retention.1013"; transcript_id "intron_retention.1013"; gene_name "CUFF.528"; flanks "124951953-,124951498^"; structure "0,1^2-"; splice_chain ",124951953^124951498-";
chr3	juncbase	alternative_donor	107591815	107586272	.	-	.	gene_id "alternative_donor.1305"; transcript_id "alternative_donor.1305"; gene_name ""; flanks "107591815-,107586272^"; structure "1^,2^"; splice_chain "107594977^,107591815^";
chr3	juncbase	alternative_donor	107596160	107586272	.	-	.	gene_id "alternative_donor.1306"; transcript_id "alternative_donor.1306"; gene_name ""; flanks "107596160-,107586272^"; structure "1^,2^"; splice_chain "107596160^,107594977^";
chr3	juncbase	cassette	132948195	133109024	.	+	.	gene_id "cassette.738"; transcript_id "cassette.738"; gene_name "CUFF.543"; flanks "132948195-,133109024^"; structure "0,1-2^"; splice_chain ",133098596-133100005^";
chr3	juncbase	alternative_acceptor	19992553	20017093	.	+	.	gene_id "alternative_acceptor.949"; transcript_id "alternative_acceptor.949"; gene_name "CUFF.432"; flanks "19992553-,20017093^"; structure "1-,2-"; splice_chain "20012040-,20017093-";
chr3	juncbase	alternative_acceptor	19992553	20017135	.	+	.	gene_id "alternative_acceptor.950"; transcript_id "alternative_acceptor.950"; gene_name "CUFF.432"; flanks "19992553-,20017135^"; structure "1-,2-"; splice_chain "20012040-,20017135-";
chr3	juncbase	alternative_acceptor	19992553	20017079	.	+	.	gene_id "alternative_acceptor.951"; transcript_id "alternative_acceptor.951"; gene_name "CUFF.432"; flanks "19992553-,20017079^"; structure "1-,2-"; splice_chain "20012040-,20017079-";
chr3	juncbase	alternative_acceptor	126135351	126137298	.	+	.	gene_id "alternative_acceptor.952"; transcript_id "alternative_acceptor.952"; gene_name "CUFF.538"; flanks "126135351-,126137298^"; structure "1-,2-"; splice_chain "126135615-,126137298-";
chr3	juncbase	alternative_acceptor	126135351	126137301	.	+	.	gene_id "alternative_acceptor.953"; transcript_id "alternative_acceptor.953"; gene_name "CUFF.538"; flanks "126135351-,126137301^"; structure "1-,2-"; splice_chain "126135615-,126137301-";
chr3	juncbase	jcn_only_AA	19992553	20017135	.	+	.	gene_id "jcn_only_AA.1235"; transcript_id "jcn_only_AA.1235"; gene_name "CUFF.432"; flanks "19992553-,20017135^"; structure "1-,2-"; splice_chain "20017093-,20017135-";
chr3	juncbase	jcn_only_AA	19992553	20017079	.	+	.	gene_id "jcn_only_AA.1236"; transcript_id "jcn_only_AA.1236"; gene_name "CUFF.432"; flanks "19992553-,20017079^"; structure "1-,2-"; splice_chain "20017079-,20017093-";
chr3	juncbase	jcn_only_AA	19992553	20012040	.	+	.	gene_id "jcn_only_AA.1237"; transcript_id "jcn_only_AA.1237"; gene_name "CUFF.432"; flanks "19992553-,20012040^"; structure "1-,2-"; splice_chain "20012040-,20017093-";
chr3	juncbase	alternative_donor	27243001	27233733	.	-	.	gene_id "alternative_donor.1307"; transcript_id "alternative_donor.1307"; gene_name "CUFF.441"; flanks "27243001-,27233733^"; structure "1^,2^"; splice_chain "27243001^,27236028^";
chr3	juncbase	alternative_donor	27235552	27233733	.	-	.	gene_id "alternative_donor.1308"; transcript_id "alternative_donor.1308"; gene_name "CUFF.441"; flanks "27235552-,27233733^"; structure "1^,2^"; splice_chain "27236028^,27235552^";
chr3	juncbase	intron_retention	141713862	141697524	.	-	.	gene_id "intron_retention.1014"; transcript_id "intron_retention.1014"; gene_name ""; flanks "141713862-,141697524^"; structure "0,1^2-"; splice_chain ",141713862^141697524-";
chr3	juncbase	alternative_acceptor	127299006	127313643	.	-	.	gene_id "alternative_acceptor.954"; transcript_id "alternative_acceptor.954"; gene_name "CUFF.542"; flanks "127299006-,127313643^"; structure "1-,2-"; splice_chain "127310793-,127299006-";
chr3	juncbase	cassette	119263397	119246688	.	-	.	gene_id "cassette.739"; transcript_id "cassette.739"; gene_name "CUFF.514"; flanks "119263397-,119246688^"; structure "0,1-2^"; splice_chain ",119256265-119255984^";
chr3	juncbase	jcn_only_AA	107576049	107586158	.	-	.	gene_id "jcn_only_AA.1238"; transcript_id "jcn_only_AA.1238"; gene_name ""; flanks "107576049-,107586158^"; structure "1-,2-"; splice_chain "107585600-,107576049-";
chr3	juncbase	jcn_only_AA	107578108	107586158	.	-	.	gene_id "jcn_only_AA.1239"; transcript_id "jcn_only_AA.1239"; gene_name ""; flanks "107578108-,107586158^"; structure "1-,2-"; splice_chain "107585600-,107578108-";
chr3	juncbase	alternative_donor	107577978	107576049	.	-	.	gene_id "alternative_donor.1309"; transcript_id "alternative_donor.1309"; gene_name "CUFF.504"; flanks "107577978-,107576049^"; structure "1^,2^"; splice_chain "107585499^,107577978^";
chr3	juncbase	alternative_donor	107586158	107576049	.	-	.	gene_id "alternative_donor.1310"; transcript_id "alternative_donor.1310"; gene_name "CUFF.504"; flanks "107586158-,107576049^"; structure "1^,2^"; splice_chain "107586158^,107585499^";
chr3	juncbase	alternative_donor	107591815	107576049	.	-	.	gene_id "alternative_donor.1311"; transcript_id "alternative_donor.1311"; gene_name "CUFF.504"; flanks "107591815-,107576049^"; structure "1^,2^"; splice_chain "107591815^,107585499^";
chr3	juncbase	intron_retention	27353590	27352507	.	-	.	gene_id "intron_retention.1015"; transcript_id "intron_retention.1015"; gene_name ""; flanks "27353590-,27352507^"; structure "0,1^2-"; splice_chain ",27353590^27352507-";
chr3	juncbase	intron_retention	127294592	127294348	.	-	.	gene_id "intron_retention.1016"; transcript_id "intron_retention.1016"; gene_name ""; flanks "127294592-,127294348^"; structure "0,1^2-"; splice_chain ",127294592^127294348-";
chr3	juncbase	alternative_donor	125042153	125032500	.	-	.	gene_id "alternative_donor.1312"; transcript_id "alternative_donor.1312"; gene_name "CUFF.528"; flanks "125042153-,125032500^"; structure "1^,2^"; splice_chain "125042153^,125033781^";
chr3	juncbase	alternative_donor	125042232	125032500	.	-	.	gene_id "alternative_donor.1313"; transcript_id "alternative_donor.1313"; gene_name "CUFF.528"; flanks "125042232-,125032500^"; structure "1^,2^"; splice_chain "125042232^,125033781^";
chr3	juncbase	alternative_acceptor	27329234	27332753	.	-	.	gene_id "alternative_acceptor.955"; transcript_id "alternative_acceptor.955"; gene_name ""; flanks "27329234-,27332753^"; structure "1-,2-"; splice_chain "27332245-,27329234-";
chr3	juncbase	jcn_only_AD	122786053	122808015	.	+	.	gene_id "jcn_only_AD.1562"; transcript_id "jcn_only_AD.1562"; gene_name "CUFF.524"; flanks "122786053-,122808015^"; structure "1^,2^"; splice_chain "122786053^,122786422^";
chr3	juncbase	alternative_acceptor	107585600	107586158	.	-	.	gene_id "alternative_acceptor.956"; transcript_id "alternative_acceptor.956"; gene_name ""; flanks "107585600-,107586158^"; structure "1-,2-"; splice_chain "107585600-,107576049-";
chr3	juncbase	alternative_acceptor	107578108	107586158	.	-	.	gene_id "alternative_acceptor.957"; transcript_id "alternative_acceptor.957"; gene_name ""; flanks "107578108-,107586158^"; structure "1-,2-"; splice_chain "107578108-,107576049-";
chr3	juncbase	jcn_only_AD	33600799	33592887	.	-	.	gene_id "jcn_only_AD.1563"; transcript_id "jcn_only_AD.1563"; gene_name "CUFF.450,CUFF.471"; flanks "33600799-,33592887^"; structure "1^,2^"; splice_chain "33600799^,33600617^";
chr3	juncbase	alternative_donor	119188105	119188667	.	+	.	gene_id "alternative_donor.1314"; transcript_id "alternative_donor.1314"; gene_name "CUFF.513"; flanks "119188105-,119188667^"; structure "1^,2^"; splice_chain "119187953^,119188105^";
chr3	juncbase	alternative_donor	119187853	119188667	.	+	.	gene_id "alternative_donor.1315"; transcript_id "alternative_donor.1315"; gene_name "CUFF.513"; flanks "119187853-,119188667^"; structure "1^,2^"; splice_chain "119187853^,119187953^";
chr3	juncbase	intron_retention	119529041	119530386	.	+	.	gene_id "intron_retention.1017"; transcript_id "intron_retention.1017"; gene_name "CUFF.517"; flanks "119529041-,119530386^"; structure "0,1^2-"; splice_chain ",119529041^119530386-";
chr3	juncbase	jcn_only_AA	107585600	107586158	.	-	.	gene_id "jcn_only_AA.1240"; transcript_id "jcn_only_AA.1240"; gene_name ""; flanks "107585600-,107586158^"; structure "1-,2-"; splice_chain "107585600-,107578108-";
chr3	juncbase	jcn_only_AA	107576049	107586158	.	-	.	gene_id "jcn_only_AA.1241"; transcript_id "jcn_only_AA.1241"; gene_name ""; flanks "107576049-,107586158^"; structure "1-,2-"; splice_chain "107578108-,107576049-";
chr3	juncbase	jcn_only_AA	133407208	133418749	.	+	.	gene_id "jcn_only_AA.1242"; transcript_id "jcn_only_AA.1242"; gene_name "CUFF.546"; flanks "133407208-,133418749^"; structure "1-,2-"; splice_chain "133410567-,133418749-";
chr3	juncbase	jcn_only_AA	133407208	133419726	.	+	.	gene_id "jcn_only_AA.1243"; transcript_id "jcn_only_AA.1243"; gene_name "CUFF.546"; flanks "133407208-,133419726^"; structure "1-,2-"; splice_chain "133410567-,133419726-";
chr3	juncbase	jcn_only_AA	122843190	122864369	.	+	.	gene_id "jcn_only_AA.1244"; transcript_id "jcn_only_AA.1244"; gene_name "CUFF.524"; flanks "122843190-,122864369^"; structure "1-,2-"; splice_chain "122849327-,122864369-";
chr3	juncbase	alternative_acceptor	120396876	120400944	.	-	.	gene_id "alternative_acceptor.958"; transcript_id "alternative_acceptor.958"; gene_name "CUFF.522"; flanks "120396876-,120400944^"; structure "1-,2-"; splice_chain "120396876-,120394710-";
chr3	juncbase	alternative_acceptor	120396838	120400944	.	-	.	gene_id "alternative_acceptor.959"; transcript_id "alternative_acceptor.959"; gene_name "CUFF.522"; flanks "120396838-,120400944^"; structure "1-,2-"; splice_chain "120396838-,120394710-";
chr3	juncbase	cassette	57570111	57563114	.	-	.	gene_id "cassette.740"; transcript_id "cassette.740"; gene_name "CUFF.477"; flanks "57570111-,57563114^"; structure "0,1-2^"; splice_chain ",57569759-57569625^";
chr3	juncbase	jcn_only_AD	49339871	49338124	.	-	.	gene_id "jcn_only_AD.1564"; transcript_id "jcn_only_AD.1564"; gene_name "CUFF.461"; flanks "49339871-,49338124^"; structure "1^,2^"; splice_chain "49339871^,49339817^";
chr3	juncbase	cassette	165547305	165504099	.	-	.	gene_id "cassette.741"; transcript_id "cassette.741"; gene_name "CUFF.562"; flanks "165547305-,165504099^"; structure "0,1-2^"; splice_chain ",165545857-165545774^";
chr3	juncbase	jcn_only_AD	49362135	49354911	.	-	.	gene_id "jcn_only_AD.1565"; transcript_id "jcn_only_AD.1565"; gene_name ""; flanks "49362135-,49354911^"; structure "1^,2^"; splice_chain "49362135^,49355742^";
chr3	juncbase	jcn_only_AD	127317039	127313776	.	-	.	gene_id "jcn_only_AD.1566"; transcript_id "jcn_only_AD.1566"; gene_name ""; flanks "127317039-,127313776^"; structure "1^,2^"; splice_chain "127317039^,127314295^";
chr3	juncbase	jcn_only_AD	28357914	28361000	.	+	.	gene_id "jcn_only_AD.1567"; transcript_id "jcn_only_AD.1567"; gene_name ""; flanks "28357914-,28361000^"; structure "1^,2^"; splice_chain "28357914^,28358350^";
chr3	juncbase	jcn_only_AD	28360370	28361000	.	+	.	gene_id "jcn_only_AD.1568"; transcript_id "jcn_only_AD.1568"; gene_name ""; flanks "28360370-,28361000^"; structure "1^,2^"; splice_chain "28358350^,28360370^";
chr3	juncbase	jcn_only_AD	19992553	20017093	.	+	.	gene_id "jcn_only_AD.1569"; transcript_id "jcn_only_AD.1569"; gene_name "CUFF.432"; flanks "19992553-,20017093^"; structure "1^,2^"; splice_chain "19992553^,20012209^";
chr3	juncbase	cassette	33450728	33444396	.	-	.	gene_id "cassette.742"; transcript_id "cassette.742"; gene_name "CUFF.452"; flanks "33450728-,33444396^"; structure "0,1-2^"; splice_chain ",33450289-33450182^";
chr3	juncbase	jcn_only_AD	107594977	107591873	.	-	.	gene_id "jcn_only_AD.1570"; transcript_id "jcn_only_AD.1570"; gene_name ""; flanks "107594977-,107591873^"; structure "1^,2^"; splice_chain "107594977^,107594306^";
chr3	juncbase	jcn_only_AD	107596749	107591873	.	-	.	gene_id "jcn_only_AD.1571"; transcript_id "jcn_only_AD.1571"; gene_name ""; flanks "107596749-,107591873^"; structure "1^,2^"; splice_chain "107596749^,107594306^";
chr3	juncbase	cassette	93692518	93646251	.	-	.	gene_id "cassette.743"; transcript_id "cassette.743"; gene_name "CUFF.499"; flanks "93692518-,93646251^"; structure "0,1-2^"; splice_chain ",93647641-93647546^";
chr3	juncbase	jcn_only_AA	27297862	27326093	.	-	.	gene_id "jcn_only_AA.1245"; transcript_id "jcn_only_AA.1245"; gene_name "CUFF.441"; flanks "27297862-,27326093^"; structure "1-,2-"; splice_chain "27320464-,27297862-";
chr3	juncbase	jcn_only_AD	28360370	28361000	.	+	.	gene_id "jcn_only_AD.1572"; transcript_id "jcn_only_AD.1572"; gene_name ""; flanks "28360370-,28361000^"; structure "1^,2^"; splice_chain "28357914^,28360370^";
chr3	juncbase	jcn_only_AD	28358350	28361000	.	+	.	gene_id "jcn_only_AD.1573"; transcript_id "jcn_only_AD.1573"; gene_name ""; flanks "28358350-,28361000^"; structure "1^,2^"; splice_chain "28357914^,28358350^";
chr3	juncbase	alternative_donor	33458250	33454319	.	-	.	gene_id "alternative_donor.1316"; transcript_id "alternative_donor.1316"; gene_name "CUFF.452"; flanks "33458250-,33454319^"; structure "1^,2^"; splice_chain "33458250^,33457498^";
chr3	juncbase	alternative_donor	33612219	33602463	.	-	.	gene_id "alternative_donor.1317"; transcript_id "alternative_donor.1317"; gene_name "CUFF.450"; flanks "33612219-,33602463^"; structure "1^,2^"; splice_chain "33612219^,33605456^";
chr3	juncbase	intron_retention	125725957	125725407	.	-	.	gene_id "intron_retention.1018"; transcript_id "intron_retention.1018"; gene_name "CUFF.535"; flanks "125725957-,125725407^"; structure "0,1^2-"; splice_chain ",125725957^125725407-";
chr3	juncbase	intron_retention	122863676	122864369	.	+	.	gene_id "intron_retention.1019"; transcript_id "intron_retention.1019"; gene_name "CUFF.524"; flanks "122863676-,122864369^"; structure "0,1^2-"; splice_chain ",122863676^122864369-";
chr3	juncbase	jcn_only_AA	28357914	28358244	.	+	.	gene_id "jcn_only_AA.1246"; transcript_id "jcn_only_AA.1246"; gene_name ""; flanks "28357914-,28358244^"; structure "1-,2-"; splice_chain "28358244-,28360223-";
chr3	juncbase	jcn_only_AA	28357914	28361000	.	+	.	gene_id "jcn_only_AA.1247"; transcript_id "jcn_only_AA.1247"; gene_name ""; flanks "28357914-,28361000^"; structure "1-,2-"; splice_chain "28360223-,28361000-";
chr3	juncbase	alternative_acceptor	27297862	27326093	.	-	.	gene_id "alternative_acceptor.960"; transcript_id "alternative_acceptor.960"; gene_name "CUFF.441"; flanks "27297862-,27326093^"; structure "1-,2-"; splice_chain "27320464-,27297862-";
chr3	juncbase	intron_retention	133921574	133914026	.	-	.	gene_id "intron_retention.1020"; transcript_id "intron_retention.1020"; gene_name "CUFF.547"; flanks "133921574-,133914026^"; structure "0,1^2-"; splice_chain ",133921574^133914026-";
chr3	juncbase	cassette	186756661	186769037	.	+	.	gene_id "cassette.744"; transcript_id "cassette.744"; gene_name "CUFF.569"; flanks "186756661-,186769037^"; structure "0,1-2^"; splice_chain ",186760442-186761098^";
chr3	juncbase	alternative_acceptor	107559251	107560952	.	-	.	gene_id "alternative_acceptor.961"; transcript_id "alternative_acceptor.961"; gene_name "CUFF.504"; flanks "107559251-,107560952^"; structure "1-,2-"; splice_chain "107560866-,107559251-";
chr3	juncbase	jcn_only_AA	107586424	107596749	.	-	.	gene_id "jcn_only_AA.1248"; transcript_id "jcn_only_AA.1248"; gene_name ""; flanks "107586424-,107596749^"; structure "1-,2-"; splice_chain "107596344-,107586424-";
chr3	juncbase	jcn_only_AA	107595033	107596749	.	-	.	gene_id "jcn_only_AA.1249"; transcript_id "jcn_only_AA.1249"; gene_name ""; flanks "107595033-,107596749^"; structure "1-,2-"; splice_chain "107596344-,107595033-";
chr3	juncbase	jcn_only_AA	107591873	107596749	.	-	.	gene_id "jcn_only_AA.1250"; transcript_id "jcn_only_AA.1250"; gene_name ""; flanks "107591873-,107596749^"; structure "1-,2-"; splice_chain "107596344-,107591873-";
chr3	juncbase	intron_retention	19992553	20017079	.	+	.	gene_id "intron_retention.1021"; transcript_id "intron_retention.1021"; gene_name ""; flanks "19992553-,20017079^"; structure "0,1^2-"; splice_chain ",19992553^20017079-";
chr3	juncbase	cassette	27203952	27183073	.	-	.	gene_id "cassette.745"; transcript_id "cassette.745"; gene_name "CUFF.441"; flanks "27203952-,27183073^"; structure "0,1-2^"; splice_chain ",27184965-27184936^";
chr3	juncbase	alternative_donor	186769134	186790637	.	+	.	gene_id "alternative_donor.1318"; transcript_id "alternative_donor.1318"; gene_name "CUFF.569"; flanks "186769134-,186790637^"; structure "1^,2^"; splice_chain "186769134^,186782404^";
chr3	juncbase	intron_retention	141713862	141712427	.	-	.	gene_id "intron_retention.1022"; transcript_id "intron_retention.1022"; gene_name ""; flanks "141713862-,141712427^"; structure "0,1^2-"; splice_chain ",141713862^141712427-";
chr3	juncbase	jcn_only_AD	28357914	28361000	.	+	.	gene_id "jcn_only_AD.1574"; transcript_id "jcn_only_AD.1574"; gene_name ""; flanks "28357914-,28361000^"; structure "1^,2^"; splice_chain "28357914^,28360370^";
chr3	juncbase	jcn_only_AD	28358350	28361000	.	+	.	gene_id "jcn_only_AD.1575"; transcript_id "jcn_only_AD.1575"; gene_name ""; flanks "28358350-,28361000^"; structure "1^,2^"; splice_chain "28358350^,28360370^";
chr3	juncbase	cassette	33557515	33543260	.	-	.	gene_id "cassette.746"; transcript_id "cassette.746"; gene_name "CUFF.450"; flanks "33557515-,33543260^"; structure "0,1-2^"; splice_chain ",33552256-33552050^";
chr3	juncbase	alternative_acceptor	120352175	120357302	.	-	.	gene_id "alternative_acceptor.962"; transcript_id "alternative_acceptor.962"; gene_name "CUFF.522"; flanks "120352175-,120357302^"; structure "1-,2-"; splice_chain "120352437-,120352175-";
chr3	juncbase	alternative_acceptor	33592887	33600799	.	-	.	gene_id "alternative_acceptor.963"; transcript_id "alternative_acceptor.963"; gene_name "CUFF.450"; flanks "33592887-,33600799^"; structure "1-,2-"; splice_chain "33600667-,33592887-";
chr3	juncbase	jcn_only_AA	33454319	33458250	.	-	.	gene_id "jcn_only_AA.1251"; transcript_id "jcn_only_AA.1251"; gene_name "CUFF.452"; flanks "33454319-,33458250^"; structure "1-,2-"; splice_chain "33457592-,33454319-";
chr3	juncbase	alternative_acceptor	119530573	119531644	.	+	.	gene_id "alternative_acceptor.964"; transcript_id "alternative_acceptor.964"; gene_name ""; flanks "119530573-,119531644^"; structure "1-,2-"; splice_chain "119531533-,119531644-";
chr3	juncbase	jcn_only_AA	28357914	28358244	.	+	.	gene_id "jcn_only_AA.1252"; transcript_id "jcn_only_AA.1252"; gene_name ""; flanks "28357914-,28358244^"; structure "1-,2-"; splice_chain "28358244-,28361000-";
chr3	juncbase	jcn_only_AA	28357914	28360223	.	+	.	gene_id "jcn_only_AA.1253"; transcript_id "jcn_only_AA.1253"; gene_name ""; flanks "28357914-,28360223^"; structure "1-,2-"; splice_chain "28360223-,28361000-";
chr3	juncbase	cassette	47017843	46982555	.	-	.	gene_id "cassette.747"; transcript_id "cassette.747"; gene_name "CUFF.461"; flanks "47017843-,46982555^"; structure "0,1-2^"; splice_chain ",47007619-47007474^";
chr3	juncbase	cassette	33617661	33614846	.	-	.	gene_id "cassette.748"; transcript_id "cassette.748"; gene_name "CUFF.450"; flanks "33617661-,33614846^"; structure "0,1-2^"; splice_chain ",33615988-33615965^";
chr3	juncbase	intron_retention	28283303	28357824	.	+	.	gene_id "intron_retention.1023"; transcript_id "intron_retention.1023"; gene_name ""; flanks "28283303-,28357824^"; structure "0,1^2-"; splice_chain ",28283303^28357824-";
chr3	juncbase	jcn_only_AD	71803795	71777774	.	-	.	gene_id "jcn_only_AD.1576"; transcript_id "jcn_only_AD.1576"; gene_name "CUFF.441"; flanks "71803795-,71777774^"; structure "1^,2^"; splice_chain "71803795^,71778225^";
chr3	juncbase	jcn_only_AD	71802614	71777774	.	-	.	gene_id "jcn_only_AD.1577"; transcript_id "jcn_only_AD.1577"; gene_name "CUFF.441"; flanks "71802614-,71777774^"; structure "1^,2^"; splice_chain "71802614^,71778225^";
chr3	juncbase	jcn_only_AD	71803366	71777774	.	-	.	gene_id "jcn_only_AD.1578"; transcript_id "jcn_only_AD.1578"; gene_name "CUFF.441"; flanks "71803366-,71777774^"; structure "1^,2^"; splice_chain "71803366^,71778225^";
chr3	juncbase	cassette	196229744	196214449	.	-	.	gene_id "cassette.749"; transcript_id "cassette.749"; gene_name "CUFF.577"; flanks "196229744-,196214449^"; structure "0,1-2^"; splice_chain ",196215554-196215478^";
chr3	juncbase	jcn_only_AA	107573541	107573977	.	-	.	gene_id "jcn_only_AA.1254"; transcript_id "jcn_only_AA.1254"; gene_name "CUFF.504"; flanks "107573541-,107573977^"; structure "1-,2-"; splice_chain "107573541-,107572901-";
chr3	juncbase	jcn_only_AA	107572806	107573977	.	-	.	gene_id "jcn_only_AA.1255"; transcript_id "jcn_only_AA.1255"; gene_name "CUFF.504"; flanks "107572806-,107573977^"; structure "1-,2-"; splice_chain "107572901-,107572806-";
chr3	juncbase	jcn_only_AD	119501147	119526076	.	+	.	gene_id "jcn_only_AD.1579"; transcript_id "jcn_only_AD.1579"; gene_name "CUFF.517"; flanks "119501147-,119526076^"; structure "1^,2^"; splice_chain "119501147^,119501699^";
chr3	juncbase	alternative_acceptor	33602463	33612219	.	-	.	gene_id "alternative_acceptor.965"; transcript_id "alternative_acceptor.965"; gene_name "CUFF.450"; flanks "33602463-,33612219^"; structure "1-,2-"; splice_chain "33605458-,33602463-";
chr3	juncbase	jcn_only_AD	73482790	73453546	.	-	.	gene_id "jcn_only_AD.1580"; transcript_id "jcn_only_AD.1580"; gene_name "CUFF.487"; flanks "73482790-,73453546^"; structure "1^,2^"; splice_chain "73605851^,73482790^";
chr3	juncbase	jcn_only_AD	73610602	73453546	.	-	.	gene_id "jcn_only_AD.1581"; transcript_id "jcn_only_AD.1581"; gene_name "CUFF.487"; flanks "73610602-,73453546^"; structure "1^,2^"; splice_chain "73610602^,73605851^";
chr3	juncbase	jcn_only_AD	73651505	73453546	.	-	.	gene_id "jcn_only_AD.1582"; transcript_id "jcn_only_AD.1582"; gene_name "CUFF.487"; flanks "73651505-,73453546^"; structure "1^,2^"; splice_chain "73651505^,73605851^";
chr3	juncbase	jcn_only_AD	73523606	73453546	.	-	.	gene_id "jcn_only_AD.1583"; transcript_id "jcn_only_AD.1583"; gene_name "CUFF.487"; flanks "73523606-,73453546^"; structure "1^,2^"; splice_chain "73605851^,73523606^";
chr3	juncbase	jcn_only_AD	73618302	73453546	.	-	.	gene_id "jcn_only_AD.1584"; transcript_id "jcn_only_AD.1584"; gene_name "CUFF.487"; flanks "73618302-,73453546^"; structure "1^,2^"; splice_chain "73618302^,73605851^";
chr3	juncbase	intron_retention	28357914	28360223	.	+	.	gene_id "intron_retention.1024"; transcript_id "intron_retention.1024"; gene_name ""; flanks "28357914-,28360223^"; structure "0,1^2-"; splice_chain ",28357914^28360223-";
chr3	juncbase	jcn_only_AA	19992553	20017093	.	+	.	gene_id "jcn_only_AA.1256"; transcript_id "jcn_only_AA.1256"; gene_name "CUFF.432"; flanks "19992553-,20017093^"; structure "1-,2-"; splice_chain "20017093-,20017135-";
chr3	juncbase	jcn_only_AA	19992553	20017079	.	+	.	gene_id "jcn_only_AA.1257"; transcript_id "jcn_only_AA.1257"; gene_name "CUFF.432"; flanks "19992553-,20017079^"; structure "1-,2-"; splice_chain "20017079-,20017135-";
chr3	juncbase	jcn_only_AA	19992553	20012040	.	+	.	gene_id "jcn_only_AA.1258"; transcript_id "jcn_only_AA.1258"; gene_name "CUFF.432"; flanks "19992553-,20012040^"; structure "1-,2-"; splice_chain "20012040-,20017135-";
chr3	juncbase	cassette	107575927	107574076	.	-	.	gene_id "cassette.750"; transcript_id "cassette.750"; gene_name "CUFF.504"; flanks "107575927-,107574076^"; structure "0,1-2^"; splice_chain ",107575171-107574855^";
chr3	juncbase	jcn_only_AD	186769134	186790637	.	+	.	gene_id "jcn_only_AD.1585"; transcript_id "jcn_only_AD.1585"; gene_name "CUFF.569"; flanks "186769134-,186790637^"; structure "1^,2^"; splice_chain "186769134^,186782404^";
chr3	juncbase	alternative_acceptor	19992553	20017093	.	+	.	gene_id "alternative_acceptor.966"; transcript_id "alternative_acceptor.966"; gene_name "CUFF.432"; flanks "19992553-,20017093^"; structure "1-,2-"; splice_chain "20017079-,20017093-";
chr3	juncbase	alternative_acceptor	19992553	20017135	.	+	.	gene_id "alternative_acceptor.967"; transcript_id "alternative_acceptor.967"; gene_name "CUFF.432"; flanks "19992553-,20017135^"; structure "1-,2-"; splice_chain "20017079-,20017135-";
chr3	juncbase	alternative_acceptor	19992553	20012040	.	+	.	gene_id "alternative_acceptor.968"; transcript_id "alternative_acceptor.968"; gene_name "CUFF.432"; flanks "19992553-,20012040^"; structure "1-,2-"; splice_chain "20012040-,20017079-";
chr3	juncbase	jcn_only_AD	28283303	28304782	.	+	.	gene_id "jcn_only_AD.1586"; transcript_id "jcn_only_AD.1586"; gene_name "CUFF.442"; flanks "28283303-,28304782^"; structure "1^,2^"; splice_chain "28283303^,28295256^";
chr3	juncbase	jcn_only_AD	28283392	28304782	.	+	.	gene_id "jcn_only_AD.1587"; transcript_id "jcn_only_AD.1587"; gene_name "CUFF.442"; flanks "28283392-,28304782^"; structure "1^,2^"; splice_chain "28283392^,28295256^";
chr3	juncbase	alternative_acceptor	49462486	49462800	.	-	.	gene_id "alternative_acceptor.969"; transcript_id "alternative_acceptor.969"; gene_name "CUFF.468"; flanks "49462486-,49462800^"; structure "1-,2-"; splice_chain "49462579-,49462486-";
chr3	juncbase	jcn_only_AD	73482790	73453546	.	-	.	gene_id "jcn_only_AD.1588"; transcript_id "jcn_only_AD.1588"; gene_name "CUFF.487"; flanks "73482790-,73453546^"; structure "1^,2^"; splice_chain "73651505^,73482790^";
chr3	juncbase	jcn_only_AD	73610602	73453546	.	-	.	gene_id "jcn_only_AD.1589"; transcript_id "jcn_only_AD.1589"; gene_name "CUFF.487"; flanks "73610602-,73453546^"; structure "1^,2^"; splice_chain "73651505^,73610602^";
chr3	juncbase	jcn_only_AD	73523606	73453546	.	-	.	gene_id "jcn_only_AD.1590"; transcript_id "jcn_only_AD.1590"; gene_name "CUFF.487"; flanks "73523606-,73453546^"; structure "1^,2^"; splice_chain "73651505^,73523606^";
chr3	juncbase	jcn_only_AD	73605851	73453546	.	-	.	gene_id "jcn_only_AD.1591"; transcript_id "jcn_only_AD.1591"; gene_name "CUFF.487"; flanks "73605851-,73453546^"; structure "1^,2^"; splice_chain "73651505^,73605851^";
chr3	juncbase	jcn_only_AD	73618302	73453546	.	-	.	gene_id "jcn_only_AD.1592"; transcript_id "jcn_only_AD.1592"; gene_name "CUFF.487"; flanks "73618302-,73453546^"; structure "1^,2^"; splice_chain "73651505^,73618302^";
chr3	juncbase	alternative_donor	27243001	27233733	.	-	.	gene_id "alternative_donor.1319"; transcript_id "alternative_donor.1319"; gene_name "CUFF.441,CUFF.542"; flanks "27243001-,27233733^"; structure "1^,2^"; splice_chain "27243001^,27235552^";
chr3	juncbase	alternative_donor	27236028	27233733	.	-	.	gene_id "alternative_donor.1320"; transcript_id "alternative_donor.1320"; gene_name "CUFF.441,CUFF.542"; flanks "27236028-,27233733^"; structure "1^,2^"; splice_chain "27236028^,27235552^";
chr3	juncbase	jcn_only_AD	112046541	112048193	.	+	.	gene_id "jcn_only_AD.1593"; transcript_id "jcn_only_AD.1593"; gene_name "CUFF.509"; flanks "112046541-,112048193^"; structure "1^,2^"; splice_chain "112046541^,112046553^";
chr3	juncbase	intron_retention	57583059	57582950	.	-	.	gene_id "intron_retention.1025"; transcript_id "intron_retention.1025"; gene_name ""; flanks "57583059-,57582950^"; structure "0,1^2-"; splice_chain ",57583059^57582950-";
chr3	juncbase	jcn_only_AA	107595033	107596160	.	-	.	gene_id "jcn_only_AA.1259"; transcript_id "jcn_only_AA.1259"; gene_name ""; flanks "107595033-,107596160^"; structure "1-,2-"; splice_chain "107595033-,107586272-";
chr3	juncbase	jcn_only_AA	107595378	107596160	.	-	.	gene_id "jcn_only_AA.1260"; transcript_id "jcn_only_AA.1260"; gene_name ""; flanks "107595378-,107596160^"; structure "1-,2-"; splice_chain "107595378-,107586272-";
chr3	juncbase	alternative_donor	125042153	125032500	.	-	.	gene_id "alternative_donor.1321"; transcript_id "alternative_donor.1321"; gene_name "CUFF.528"; flanks "125042153-,125032500^"; structure "1^,2^"; splice_chain "125042232^,125042153^";
chr3	juncbase	alternative_donor	125033781	125032500	.	-	.	gene_id "alternative_donor.1322"; transcript_id "alternative_donor.1322"; gene_name "CUFF.528"; flanks "125033781-,125032500^"; structure "1^,2^"; splice_chain "125042232^,125033781^";
chr3	juncbase	intron_retention	107560952	107560866	.	-	.	gene_id "intron_retention.1026"; transcript_id "intron_retention.1026"; gene_name ""; flanks "107560952-,107560866^"; structure "0,1^2-"; splice_chain ",107560952^107560866-";
chr3	juncbase	alternative_acceptor	73453546	73651505	.	-	.	gene_id "alternative_acceptor.970"; transcript_id "alternative_acceptor.970"; gene_name ""; flanks "73453546-,73651505^"; structure "1-,2-"; splice_chain "73457411-,73453546-";
chr3	juncbase	alternative_acceptor	107591327	107591815	.	-	.	gene_id "alternative_acceptor.971"; transcript_id "alternative_acceptor.971"; gene_name "CUFF.504"; flanks "107591327-,107591815^"; structure "1-,2-"; splice_chain "107591327-,107586424-";
chr3	juncbase	alternative_acceptor	107586272	107591815	.	-	.	gene_id "alternative_acceptor.972"; transcript_id "alternative_acceptor.972"; gene_name "CUFF.504"; flanks "107586272-,107591815^"; structure "1-,2-"; splice_chain "107586424-,107586272-";
chr3	juncbase	alternative_acceptor	107576049	107591815	.	-	.	gene_id "alternative_acceptor.973"; transcript_id "alternative_acceptor.973"; gene_name "CUFF.504"; flanks "107576049-,107591815^"; structure "1-,2-"; splice_chain "107586424-,107576049-";
chr3	juncbase	jcn_only_AD	119188105	119188667	.	+	.	gene_id "jcn_only_AD.1594"; transcript_id "jcn_only_AD.1594"; gene_name "CUFF.513"; flanks "119188105-,119188667^"; structure "1^,2^"; splice_chain "119187853^,119188105^";
chr3	juncbase	jcn_only_AD	119187953	119188667	.	+	.	gene_id "jcn_only_AD.1595"; transcript_id "jcn_only_AD.1595"; gene_name "CUFF.513"; flanks "119187953-,119188667^"; structure "1^,2^"; splice_chain "119187853^,119187953^";
chr3	juncbase	jcn_only_AD	119205779	119207776	.	+	.	gene_id "jcn_only_AD.1596"; transcript_id "jcn_only_AD.1596"; gene_name "CUFF.513"; flanks "119205779-,119207776^"; structure "1^,2^"; splice_chain "119205779^,119205883^";
chr3	juncbase	intron_retention	8787559	8787656	.	+	.	gene_id "intron_retention.1027"; transcript_id "intron_retention.1027"; gene_name "CUFF.425"; flanks "8787559-,8787656^"; structure "0,1^2-"; splice_chain ",8787559^8787656-";
chr3	juncbase	jcn_only_AD	107595282	107595033	.	-	.	gene_id "jcn_only_AD.1597"; transcript_id "jcn_only_AD.1597"; gene_name ""; flanks "107595282-,107595033^"; structure "1^,2^"; splice_chain "107595302^,107595282^";
chr3	juncbase	jcn_only_AD	107596749	107595033	.	-	.	gene_id "jcn_only_AD.1598"; transcript_id "jcn_only_AD.1598"; gene_name ""; flanks "107596749-,107595033^"; structure "1^,2^"; splice_chain "107596749^,107595302^";
chr3	juncbase	jcn_only_AD	107596160	107595033	.	-	.	gene_id "jcn_only_AD.1599"; transcript_id "jcn_only_AD.1599"; gene_name ""; flanks "107596160-,107595033^"; structure "1^,2^"; splice_chain "107596160^,107595302^";
chr3	juncbase	alternative_donor	119501147	119526076	.	+	.	gene_id "alternative_donor.1323"; transcript_id "alternative_donor.1323"; gene_name "CUFF.517"; flanks "119501147-,119526076^"; structure "1^,2^"; splice_chain "119501147^,119501699^";
chr3	juncbase	alternative_acceptor	120394710	120400944	.	-	.	gene_id "alternative_acceptor.974"; transcript_id "alternative_acceptor.974"; gene_name "CUFF.522"; flanks "120394710-,120400944^"; structure "1-,2-"; splice_chain "120396838-,120394710-";
chr3	juncbase	alternative_acceptor	120396876	120400944	.	-	.	gene_id "alternative_acceptor.975"; transcript_id "alternative_acceptor.975"; gene_name "CUFF.522"; flanks "120396876-,120400944^"; structure "1-,2-"; splice_chain "120396876-,120396838-";
chr3	juncbase	alternative_donor	107594977	107586272	.	-	.	gene_id "alternative_donor.1324"; transcript_id "alternative_donor.1324"; gene_name ""; flanks "107594977-,107586272^"; structure "1^,2^"; splice_chain "107596160^,107594977^";
chr3	juncbase	alternative_donor	107591815	107586272	.	-	.	gene_id "alternative_donor.1325"; transcript_id "alternative_donor.1325"; gene_name ""; flanks "107591815-,107586272^"; structure "1^,2^"; splice_chain "107596160^,107591815^";
chr3	juncbase	intron_retention	119205779	119207776	.	+	.	gene_id "intron_retention.1028"; transcript_id "intron_retention.1028"; gene_name "CUFF.513"; flanks "119205779-,119207776^"; structure "0,1^2-"; splice_chain ",119205779^119207776-";
chr3	juncbase	cassette	33438537	33437772	.	-	.	gene_id "cassette.751"; transcript_id "cassette.751"; gene_name "CUFF.452"; flanks "33438537-,33437772^"; structure "0,1-2^"; splice_chain ",33438370-33438237^";
chr3	juncbase	jcn_only_AD	27243001	27233733	.	-	.	gene_id "jcn_only_AD.1600"; transcript_id "jcn_only_AD.1600"; gene_name "CUFF.441"; flanks "27243001-,27233733^"; structure "1^,2^"; splice_chain "27243001^,27236028^";
chr3	juncbase	jcn_only_AD	27235552	27233733	.	-	.	gene_id "jcn_only_AD.1601"; transcript_id "jcn_only_AD.1601"; gene_name "CUFF.441"; flanks "27235552-,27233733^"; structure "1^,2^"; splice_chain "27236028^,27235552^";
chr3	juncbase	jcn_only_AD	49355742	49349087	.	-	.	gene_id "jcn_only_AD.1602"; transcript_id "jcn_only_AD.1602"; gene_name "CUFF.466"; flanks "49355742-,49349087^"; structure "1^,2^"; splice_chain "49355742^,49351304^";
chr3	juncbase	jcn_only_AD	49362135	49349087	.	-	.	gene_id "jcn_only_AD.1603"; transcript_id "jcn_only_AD.1603"; gene_name "CUFF.466"; flanks "49362135-,49349087^"; structure "1^,2^"; splice_chain "49362135^,49351304^";
chr3	juncbase	jcn_only_AA	33602463	33612219	.	-	.	gene_id "jcn_only_AA.1261"; transcript_id "jcn_only_AA.1261"; gene_name "CUFF.450"; flanks "33602463-,33612219^"; structure "1-,2-"; splice_chain "33605458-,33602463-";
chr3	juncbase	intron_retention	186769134	186790637	.	+	.	gene_id "intron_retention.1029"; transcript_id "intron_retention.1029"; gene_name "CUFF.569"; flanks "186769134-,186790637^"; structure "0,1^2-"; splice_chain ",186769134^186790637-";
chr3	juncbase	jcn_only_AD	125042153	125032500	.	-	.	gene_id "jcn_only_AD.1604"; transcript_id "jcn_only_AD.1604"; gene_name "CUFF.528"; flanks "125042153-,125032500^"; structure "1^,2^"; splice_chain "125042232^,125042153^";
chr3	juncbase	jcn_only_AD	125033781	125032500	.	-	.	gene_id "jcn_only_AD.1605"; transcript_id "jcn_only_AD.1605"; gene_name "CUFF.528"; flanks "125033781-,125032500^"; structure "1^,2^"; splice_chain "125042232^,125033781^";
chr3	juncbase	alternative_donor	125635562	125637707	.	+	.	gene_id "alternative_donor.1326"; transcript_id "alternative_donor.1326"; gene_name "CUFF.534"; flanks "125635562-,125637707^"; structure "1^,2^"; splice_chain "125635562^,125635660^";
chr3	juncbase	cassette	49339817	49336068	.	-	.	gene_id "cassette.752"; transcript_id "cassette.752"; gene_name "CUFF.466"; flanks "49339817-,49336068^"; structure "0,1-2^"; splice_chain ",49338124-49337900^";
chr3	juncbase	jcn_only_AD	133407208	133419726	.	+	.	gene_id "jcn_only_AD.1606"; transcript_id "jcn_only_AD.1606"; gene_name "CUFF.546"; flanks "133407208-,133419726^"; structure "1^,2^"; splice_chain "133407208^,133418467^";
chr3	juncbase	jcn_only_AA	107591873	107594977	.	-	.	gene_id "jcn_only_AA.1262"; transcript_id "jcn_only_AA.1262"; gene_name ""; flanks "107591873-,107594977^"; structure "1-,2-"; splice_chain "107591873-,107586272-";
chr3	juncbase	jcn_only_AA	107594421	107594977	.	-	.	gene_id "jcn_only_AA.1263"; transcript_id "jcn_only_AA.1263"; gene_name ""; flanks "107594421-,107594977^"; structure "1-,2-"; splice_chain "107594421-,107586272-";
chr3	juncbase	jcn_only_AD	125032152	125007072	.	-	.	gene_id "jcn_only_AD.1607"; transcript_id "jcn_only_AD.1607"; gene_name "CUFF.528,CUFF.542"; flanks "125032152-,125007072^"; structure "1^,2^"; splice_chain "125032152^,125011309^";
chr3	juncbase	jcn_only_AA	119530573	119531644	.	+	.	gene_id "jcn_only_AA.1264"; transcript_id "jcn_only_AA.1264"; gene_name ""; flanks "119530573-,119531644^"; structure "1-,2-"; splice_chain "119531533-,119531644-";
chr3	juncbase	alternative_acceptor	133894883	133901846	.	-	.	gene_id "alternative_acceptor.976"; transcript_id "alternative_acceptor.976"; gene_name "CUFF.547"; flanks "133894883-,133901846^"; structure "1-,2-"; splice_chain "133896917-,133894883-";
chr3	juncbase	alternative_donor	107577978	107576049	.	-	.	gene_id "alternative_donor.1327"; transcript_id "alternative_donor.1327"; gene_name ""; flanks "107577978-,107576049^"; structure "1^,2^"; splice_chain "107591815^,107577978^";
chr3	juncbase	alternative_donor	107585499	107576049	.	-	.	gene_id "alternative_donor.1328"; transcript_id "alternative_donor.1328"; gene_name ""; flanks "107585499-,107576049^"; structure "1^,2^"; splice_chain "107591815^,107585499^";
chr3	juncbase	alternative_donor	107586158	107576049	.	-	.	gene_id "alternative_donor.1329"; transcript_id "alternative_donor.1329"; gene_name ""; flanks "107586158-,107576049^"; structure "1^,2^"; splice_chain "107591815^,107586158^";
chr3	juncbase	cassette	47023422	47018333	.	-	.	gene_id "cassette.753"; transcript_id "cassette.753"; gene_name "CUFF.461"; flanks "47023422-,47018333^"; structure "0,1-2^"; splice_chain ",47018530-47018428^";
chr3	juncbase	jcn_only_AD	107577978	107576049	.	-	.	gene_id "jcn_only_AD.1608"; transcript_id "jcn_only_AD.1608"; gene_name "CUFF.504"; flanks "107577978-,107576049^"; structure "1^,2^"; splice_chain "107585499^,107577978^";
chr3	juncbase	jcn_only_AD	107586158	107576049	.	-	.	gene_id "jcn_only_AD.1609"; transcript_id "jcn_only_AD.1609"; gene_name "CUFF.504"; flanks "107586158-,107576049^"; structure "1^,2^"; splice_chain "107586158^,107585499^";
chr3	juncbase	jcn_only_AD	107591815	107576049	.	-	.	gene_id "jcn_only_AD.1610"; transcript_id "jcn_only_AD.1610"; gene_name "CUFF.504"; flanks "107591815-,107576049^"; structure "1^,2^"; splice_chain "107591815^,107585499^";
chr3	juncbase	alternative_acceptor	57569759	57570111	.	-	.	gene_id "alternative_acceptor.977"; transcript_id "alternative_acceptor.977"; gene_name "CUFF.477"; flanks "57569759-,57570111^"; structure "1-,2-"; splice_chain "57569759-,57569734-";
chr3	juncbase	alternative_acceptor	57569787	57570111	.	-	.	gene_id "alternative_acceptor.978"; transcript_id "alternative_acceptor.978"; gene_name "CUFF.477"; flanks "57569787-,57570111^"; structure "1-,2-"; splice_chain "57569787-,57569734-";
chr3	juncbase	cassette	165555102	165504099	.	-	.	gene_id "cassette.754"; transcript_id "cassette.754"; gene_name "CUFF.562"; flanks "165555102-,165504099^"; structure "0,1-2^"; splice_chain ",165548829-165547305^";
chr3	juncbase	alternative_donor	186660215	186681573	.	+	.	gene_id "alternative_donor.1330"; transcript_id "alternative_donor.1330"; gene_name "CUFF.569"; flanks "186660215-,186681573^"; structure "1^,2^"; splice_chain "186660215^,186666726^";
chr3	juncbase	alternative_donor	186649183	186681573	.	+	.	gene_id "alternative_donor.1331"; transcript_id "alternative_donor.1331"; gene_name "CUFF.569"; flanks "186649183-,186681573^"; structure "1^,2^"; splice_chain "186649183^,186666726^";
chr3	juncbase	alternative_donor	186648623	186681573	.	+	.	gene_id "alternative_donor.1332"; transcript_id "alternative_donor.1332"; gene_name "CUFF.569"; flanks "186648623-,186681573^"; structure "1^,2^"; splice_chain "186648623^,186666726^";
chr3	juncbase	alternative_donor	186648927	186681573	.	+	.	gene_id "alternative_donor.1333"; transcript_id "alternative_donor.1333"; gene_name "CUFF.569"; flanks "186648927-,186681573^"; structure "1^,2^"; splice_chain "186648927^,186666726^";
chr3	juncbase	cassette	141820577	141724386	.	-	.	gene_id "cassette.755"; transcript_id "cassette.755"; gene_name "CUFF.554"; flanks "141820577-,141724386^"; structure "0,1-2^"; splice_chain ",141811969-141811903^";
chr3	juncbase	intron_retention	125802897	125787089	.	-	.	gene_id "intron_retention.1030"; transcript_id "intron_retention.1030"; gene_name "CUFF.535"; flanks "125802897-,125787089^"; structure "0,1^2-"; splice_chain ",125802897^125787089-";
chr3	juncbase	cassette	27297787	27244048	.	-	.	gene_id "cassette.756"; transcript_id "cassette.756"; gene_name "CUFF.441"; flanks "27297787-,27244048^"; structure "0,1-2^"; splice_chain ",27257371-27257223^";
chr3	juncbase	jcn_only_AD	107577978	107576049	.	-	.	gene_id "jcn_only_AD.1611"; transcript_id "jcn_only_AD.1611"; gene_name ""; flanks "107577978-,107576049^"; structure "1^,2^"; splice_chain "107591815^,107577978^";
chr3	juncbase	jcn_only_AD	107585499	107576049	.	-	.	gene_id "jcn_only_AD.1612"; transcript_id "jcn_only_AD.1612"; gene_name ""; flanks "107585499-,107576049^"; structure "1^,2^"; splice_chain "107591815^,107585499^";
chr3	juncbase	jcn_only_AD	107586158	107576049	.	-	.	gene_id "jcn_only_AD.1613"; transcript_id "jcn_only_AD.1613"; gene_name ""; flanks "107586158-,107576049^"; structure "1^,2^"; splice_chain "107591815^,107586158^";
chr3	juncbase	jcn_only_AD	33557515	33552256	.	-	.	gene_id "jcn_only_AD.1614"; transcript_id "jcn_only_AD.1614"; gene_name "CUFF.450,CUFF.466"; flanks "33557515-,33552256^"; structure "1^,2^"; splice_chain "33557515^,33556072^";
chr3	juncbase	alternative_donor	132764864	132948114	.	+	.	gene_id "alternative_donor.1334"; transcript_id "alternative_donor.1334"; gene_name ""; flanks "132764864-,132948114^"; structure "1^,2^"; splice_chain "132764864^,132911671^";
chr3	juncbase	intron_retention	51749199	51750034	.	+	.	gene_id "intron_retention.1031"; transcript_id "intron_retention.1031"; gene_name ""; flanks "51749199-,51750034^"; structure "0,1^2-"; splice_chain ",51749199^51750034-";
chr3	juncbase	jcn_only_AD	108475906	108475435	.	-	.	gene_id "jcn_only_AD.1615"; transcript_id "jcn_only_AD.1615"; gene_name "CUFF.466,CUFF.507"; flanks "108475906-,108475435^"; structure "1^,2^"; splice_chain "108475906^,108475667^";
chr3	juncbase	jcn_only_AA	124996653	125042232	.	-	.	gene_id "jcn_only_AA.1265"; transcript_id "jcn_only_AA.1265"; gene_name "CUFF.528"; flanks "124996653-,125042232^"; structure "1-,2-"; splice_chain "125032500-,124996653-";
chr3	juncbase	cassette	186681714	186769037	.	+	.	gene_id "cassette.757"; transcript_id "cassette.757"; gene_name "CUFF.569"; flanks "186681714-,186769037^"; structure "0,1-2^"; splice_chain ",186756530-186756661^";
chr3	juncbase	jcn_only_AA	107591327	107591815	.	-	.	gene_id "jcn_only_AA.1266"; transcript_id "jcn_only_AA.1266"; gene_name "CUFF.504"; flanks "107591327-,107591815^"; structure "1-,2-"; splice_chain "107591327-,107586272-";
chr3	juncbase	jcn_only_AA	107576049	107591815	.	-	.	gene_id "jcn_only_AA.1267"; transcript_id "jcn_only_AA.1267"; gene_name "CUFF.504"; flanks "107576049-,107591815^"; structure "1-,2-"; splice_chain "107586272-,107576049-";
chr3	juncbase	jcn_only_AA	107586424	107591815	.	-	.	gene_id "jcn_only_AA.1268"; transcript_id "jcn_only_AA.1268"; gene_name "CUFF.504"; flanks "107586424-,107591815^"; structure "1-,2-"; splice_chain "107586424-,107586272-";
chr3	juncbase	cassette	33623313	33617767	.	-	.	gene_id "cassette.758"; transcript_id "cassette.758"; gene_name "CUFF.450"; flanks "33623313-,33617767^"; structure "0,1-2^"; splice_chain ",33618756-33618694^";
chr3	juncbase	alternative_donor	141868025	141820683	.	-	.	gene_id "alternative_donor.1335"; transcript_id "alternative_donor.1335"; gene_name "CUFF.504,CUFF.554"; flanks "141868025-,141820683^"; structure "1^,2^"; splice_chain "141868025^,141844991^";
chr3	juncbase	alternative_acceptor	33638226	33644444	.	-	.	gene_id "alternative_acceptor.979"; transcript_id "alternative_acceptor.979"; gene_name "CUFF.450"; flanks "33638226-,33644444^"; structure "1-,2-"; splice_chain "33644081-,33638226-";
chr3	juncbase	alternative_donor	73482790	73453546	.	-	.	gene_id "alternative_donor.1336"; transcript_id "alternative_donor.1336"; gene_name "CUFF.487"; flanks "73482790-,73453546^"; structure "1^,2^"; splice_chain "73605851^,73482790^";
chr3	juncbase	alternative_donor	73610602	73453546	.	-	.	gene_id "alternative_donor.1337"; transcript_id "alternative_donor.1337"; gene_name "CUFF.487"; flanks "73610602-,73453546^"; structure "1^,2^"; splice_chain "73610602^,73605851^";
chr3	juncbase	alternative_donor	73651505	73453546	.	-	.	gene_id "alternative_donor.1338"; transcript_id "alternative_donor.1338"; gene_name "CUFF.487"; flanks "73651505-,73453546^"; structure "1^,2^"; splice_chain "73651505^,73605851^";
chr3	juncbase	alternative_donor	73523606	73453546	.	-	.	gene_id "alternative_donor.1339"; transcript_id "alternative_donor.1339"; gene_name "CUFF.487"; flanks "73523606-,73453546^"; structure "1^,2^"; splice_chain "73605851^,73523606^";
chr3	juncbase	alternative_donor	73618302	73453546	.	-	.	gene_id "alternative_donor.1340"; transcript_id "alternative_donor.1340"; gene_name "CUFF.487"; flanks "73618302-,73453546^"; structure "1^,2^"; splice_chain "73618302^,73605851^";
chr3	juncbase	alternative_acceptor	133910818	133913926	.	-	.	gene_id "alternative_acceptor.980"; transcript_id "alternative_acceptor.980"; gene_name "CUFF.547"; flanks "133910818-,133913926^"; structure "1-,2-"; splice_chain "133910827-,133910818-";
chr3	juncbase	jcn_only_AD	165503933	165491294	.	-	.	gene_id "jcn_only_AD.1616"; transcript_id "jcn_only_AD.1616"; gene_name "CUFF.441,CUFF.562"; flanks "165503933-,165491294^"; structure "1^,2^"; splice_chain "165503933^,165495505^";
chr3	juncbase	alternative_donor	73610602	73453546	.	-	.	gene_id "alternative_donor.1341"; transcript_id "alternative_donor.1341"; gene_name ""; flanks "73610602-,73453546^"; structure "1^,2^"; splice_chain "73610602^,73482790^";
chr3	juncbase	alternative_donor	73651505	73453546	.	-	.	gene_id "alternative_donor.1342"; transcript_id "alternative_donor.1342"; gene_name ""; flanks "73651505-,73453546^"; structure "1^,2^"; splice_chain "73651505^,73482790^";
chr3	juncbase	alternative_donor	73523606	73453546	.	-	.	gene_id "alternative_donor.1343"; transcript_id "alternative_donor.1343"; gene_name ""; flanks "73523606-,73453546^"; structure "1^,2^"; splice_chain "73523606^,73482790^";
chr3	juncbase	alternative_donor	73605851	73453546	.	-	.	gene_id "alternative_donor.1344"; transcript_id "alternative_donor.1344"; gene_name ""; flanks "73605851-,73453546^"; structure "1^,2^"; splice_chain "73605851^,73482790^";
chr3	juncbase	alternative_donor	73618302	73453546	.	-	.	gene_id "alternative_donor.1345"; transcript_id "alternative_donor.1345"; gene_name ""; flanks "73618302-,73453546^"; structure "1^,2^"; splice_chain "73618302^,73482790^";
chr3	juncbase	jcn_only_AD	107595282	107595033	.	-	.	gene_id "jcn_only_AD.1617"; transcript_id "jcn_only_AD.1617"; gene_name ""; flanks "107595282-,107595033^"; structure "1^,2^"; splice_chain "107596160^,107595282^";
chr3	juncbase	jcn_only_AD	107596749	107595033	.	-	.	gene_id "jcn_only_AD.1618"; transcript_id "jcn_only_AD.1618"; gene_name ""; flanks "107596749-,107595033^"; structure "1^,2^"; splice_chain "107596749^,107596160^";
chr3	juncbase	jcn_only_AD	107595302	107595033	.	-	.	gene_id "jcn_only_AD.1619"; transcript_id "jcn_only_AD.1619"; gene_name ""; flanks "107595302-,107595033^"; structure "1^,2^"; splice_chain "107596160^,107595302^";
chr3	juncbase	jcn_only_AA	107572901	107573977	.	-	.	gene_id "jcn_only_AA.1269"; transcript_id "jcn_only_AA.1269"; gene_name "CUFF.504"; flanks "107572901-,107573977^"; structure "1-,2-"; splice_chain "107573541-,107572901-";
chr3	juncbase	jcn_only_AA	107572806	107573977	.	-	.	gene_id "jcn_only_AA.1270"; transcript_id "jcn_only_AA.1270"; gene_name "CUFF.504"; flanks "107572806-,107573977^"; structure "1-,2-"; splice_chain "107573541-,107572806-";
chr3	juncbase	jcn_only_AA	107586272	107591815	.	-	.	gene_id "jcn_only_AA.1271"; transcript_id "jcn_only_AA.1271"; gene_name "CUFF.504"; flanks "107586272-,107591815^"; structure "1-,2-"; splice_chain "107591327-,107586272-";
chr3	juncbase	jcn_only_AA	107576049	107591815	.	-	.	gene_id "jcn_only_AA.1272"; transcript_id "jcn_only_AA.1272"; gene_name "CUFF.504"; flanks "107576049-,107591815^"; structure "1-,2-"; splice_chain "107591327-,107576049-";
chr3	juncbase	jcn_only_AA	107586424	107591815	.	-	.	gene_id "jcn_only_AA.1273"; transcript_id "jcn_only_AA.1273"; gene_name "CUFF.504"; flanks "107586424-,107591815^"; structure "1-,2-"; splice_chain "107591327-,107586424-";
chr3	juncbase	cassette	173632680	173628659	.	-	.	gene_id "cassette.759"; transcript_id "cassette.759"; gene_name "CUFF.565"; flanks "173632680-,173628659^"; structure "0,1-2^"; splice_chain ",173630407-173630336^";
chr3	juncbase	cassette	155520321	155485458	.	-	.	gene_id "cassette.760"; transcript_id "cassette.760"; gene_name "CUFF.558"; flanks "155520321-,155485458^"; structure "0,1-2^"; splice_chain ",155493637-155493490^";
chr3	juncbase	cassette	125639748	125647338	.	+	.	gene_id "cassette.761"; transcript_id "cassette.761"; gene_name "CUFF.534"; flanks "125639748-,125647338^"; structure "0,1-2^"; splice_chain ",125643809-125643958^";
chr3	juncbase	intron_retention	19992553	20017135	.	+	.	gene_id "intron_retention.1032"; transcript_id "intron_retention.1032"; gene_name ""; flanks "19992553-,20017135^"; structure "0,1^2-"; splice_chain ",19992553^20017135-";
chr3	juncbase	alternative_donor	28283303	28304782	.	+	.	gene_id "alternative_donor.1346"; transcript_id "alternative_donor.1346"; gene_name "CUFF.442"; flanks "28283303-,28304782^"; structure "1^,2^"; splice_chain "28283303^,28295256^";
chr3	juncbase	alternative_donor	28283392	28304782	.	+	.	gene_id "alternative_donor.1347"; transcript_id "alternative_donor.1347"; gene_name "CUFF.442"; flanks "28283392-,28304782^"; structure "1^,2^"; splice_chain "28283392^,28295256^";
chr3	juncbase	jcn_only_AD	49377917	49373029	.	-	.	gene_id "jcn_only_AD.1620"; transcript_id "jcn_only_AD.1620"; gene_name "CUFF.561"; flanks "49377917-,49373029^"; structure "1^,2^"; splice_chain "49377917^,49377357^";
chr3	juncbase	cassette	126113821	126114785	.	+	.	gene_id "cassette.762"; transcript_id "cassette.762"; gene_name "CUFF.538"; flanks "126113821-,126114785^"; structure "0,1-2^"; splice_chain ",126114168-126114272^";
chr3	juncbase	alternative_acceptor	120371493	120389274	.	-	.	gene_id "alternative_acceptor.981"; transcript_id "alternative_acceptor.981"; gene_name "CUFF.522"; flanks "120371493-,120389274^"; structure "1-,2-"; splice_chain "120371498-,120371493-";
chr3	juncbase	jcn_only_AD	107596749	107586424	.	-	.	gene_id "jcn_only_AD.1621"; transcript_id "jcn_only_AD.1621"; gene_name ""; flanks "107596749-,107586424^"; structure "1^,2^"; splice_chain "107596749^,107591173^";
chr3	juncbase	jcn_only_AD	107591815	107586424	.	-	.	gene_id "jcn_only_AD.1622"; transcript_id "jcn_only_AD.1622"; gene_name ""; flanks "107591815-,107586424^"; structure "1^,2^"; splice_chain "107591815^,107591173^";
chr3	juncbase	jcn_only_AD	49365119	49343321	.	-	.	gene_id "jcn_only_AD.1623"; transcript_id "jcn_only_AD.1623"; gene_name ""; flanks "49365119-,49343321^"; structure "1^,2^"; splice_chain "49365119^,49348053^";
chr3	juncbase	jcn_only_AD	125635562	125637707	.	+	.	gene_id "jcn_only_AD.1624"; transcript_id "jcn_only_AD.1624"; gene_name "CUFF.534"; flanks "125635562-,125637707^"; structure "1^,2^"; splice_chain "125635562^,125635660^";
chr3	juncbase	jcn_only_AA	194063431	194071971	.	-	.	gene_id "jcn_only_AA.1274"; transcript_id "jcn_only_AA.1274"; gene_name "CUFF.576"; flanks "194063431-,194071971^"; structure "1-,2-"; splice_chain "194063434-,194063431-";
chr3	juncbase	alternative_donor	119187953	119188667	.	+	.	gene_id "alternative_donor.1348"; transcript_id "alternative_donor.1348"; gene_name "CUFF.513"; flanks "119187953-,119188667^"; structure "1^,2^"; splice_chain "119187953^,119188105^";
chr3	juncbase	alternative_donor	119187853	119188667	.	+	.	gene_id "alternative_donor.1349"; transcript_id "alternative_donor.1349"; gene_name "CUFF.513"; flanks "119187853-,119188667^"; structure "1^,2^"; splice_chain "119187853^,119188105^";
chr3	juncbase	alternative_donor	119205779	119207776	.	+	.	gene_id "alternative_donor.1350"; transcript_id "alternative_donor.1350"; gene_name "CUFF.513"; flanks "119205779-,119207776^"; structure "1^,2^"; splice_chain "119205779^,119205883^";
chr3	juncbase	alternative_acceptor	125032500	125042153	.	-	.	gene_id "alternative_acceptor.982"; transcript_id "alternative_acceptor.982"; gene_name "CUFF.528"; flanks "125032500-,125042153^"; structure "1-,2-"; splice_chain "125033897-,125032500-";
chr3	juncbase	intron_retention	125802936	125787089	.	-	.	gene_id "intron_retention.1033"; transcript_id "intron_retention.1033"; gene_name "CUFF.535"; flanks "125802936-,125787089^"; structure "0,1^2-"; splice_chain ",125802936^125787089-";
chr3	juncbase	intron_retention	125745178	125743748	.	-	.	gene_id "intron_retention.1034"; transcript_id "intron_retention.1034"; gene_name "CUFF.535"; flanks "125745178-,125743748^"; structure "0,1^2-"; splice_chain ",125745178^125743748-";
chr3	juncbase	cassette	51747326	51749078	.	+	.	gene_id "cassette.763"; transcript_id "cassette.763"; gene_name "CUFF.470"; flanks "51747326-,51749078^"; structure "0,1-2^"; splice_chain ",51747980-51748137^";
chr3	juncbase	intron_retention	46965097	46964853	.	-	.	gene_id "intron_retention.1035"; transcript_id "intron_retention.1035"; gene_name "CUFF.461"; flanks "46965097-,46964853^"; structure "0,1^2-"; splice_chain ",46965097^46964853-";
chr3	juncbase	cassette	125093946	125050082	.	-	.	gene_id "cassette.764"; transcript_id "cassette.764"; gene_name "CUFF.528"; flanks "125093946-,125050082^"; structure "0,1-2^"; splice_chain ",125057755-125057666^";
chr3	juncbase	alternative_donor	71778225	71777774	.	-	.	gene_id "alternative_donor.1351"; transcript_id "alternative_donor.1351"; gene_name "CUFF.483"; flanks "71778225-,71777774^"; structure "1^,2^"; splice_chain "71803366^,71778225^";
chr3	juncbase	alternative_donor	71803795	71777774	.	-	.	gene_id "alternative_donor.1352"; transcript_id "alternative_donor.1352"; gene_name "CUFF.483"; flanks "71803795-,71777774^"; structure "1^,2^"; splice_chain "71803795^,71803366^";
chr3	juncbase	alternative_donor	71802614	71777774	.	-	.	gene_id "alternative_donor.1353"; transcript_id "alternative_donor.1353"; gene_name "CUFF.483"; flanks "71802614-,71777774^"; structure "1^,2^"; splice_chain "71803366^,71802614^";
chr3	juncbase	alternative_acceptor	49349087	49355742	.	-	.	gene_id "alternative_acceptor.983"; transcript_id "alternative_acceptor.983"; gene_name ""; flanks "49349087-,49355742^"; structure "1-,2-"; splice_chain "49354911-,49349087-";
chr3	juncbase	alternative_donor	156266594	156262228	.	-	.	gene_id "alternative_donor.1354"; transcript_id "alternative_donor.1354"; gene_name "CUFF.561"; flanks "156266594-,156262228^"; structure "1^,2^"; splice_chain "156266655^,156266594^";
chr3	juncbase	alternative_donor	156266694	156262228	.	-	.	gene_id "alternative_donor.1355"; transcript_id "alternative_donor.1355"; gene_name "CUFF.561"; flanks "156266694-,156262228^"; structure "1^,2^"; splice_chain "156266694^,156266655^";
chr3	juncbase	jcn_only_AD	49355742	49349087	.	-	.	gene_id "jcn_only_AD.1625"; transcript_id "jcn_only_AD.1625"; gene_name ""; flanks "49355742-,49349087^"; structure "1^,2^"; splice_chain "49362135^,49355742^";
chr3	juncbase	jcn_only_AD	49351304	49349087	.	-	.	gene_id "jcn_only_AD.1626"; transcript_id "jcn_only_AD.1626"; gene_name ""; flanks "49351304-,49349087^"; structure "1^,2^"; splice_chain "49362135^,49351304^";
chr3	juncbase	jcn_only_AA	49354911	49362135	.	-	.	gene_id "jcn_only_AA.1275"; transcript_id "jcn_only_AA.1275"; gene_name "CUFF.466"; flanks "49354911-,49362135^"; structure "1-,2-"; splice_chain "49354911-,49349087-";
chr3	juncbase	jcn_only_AA	49348170	49362135	.	-	.	gene_id "jcn_only_AA.1276"; transcript_id "jcn_only_AA.1276"; gene_name "CUFF.466"; flanks "49348170-,49362135^"; structure "1-,2-"; splice_chain "49349087-,49348170-";
chr3	juncbase	jcn_only_AA	49350046	49362135	.	-	.	gene_id "jcn_only_AA.1277"; transcript_id "jcn_only_AA.1277"; gene_name "CUFF.466"; flanks "49350046-,49362135^"; structure "1-,2-"; splice_chain "49350046-,49349087-";
chr3	juncbase	jcn_only_AA	107586272	107594977	.	-	.	gene_id "jcn_only_AA.1278"; transcript_id "jcn_only_AA.1278"; gene_name ""; flanks "107586272-,107594977^"; structure "1-,2-"; splice_chain "107591873-,107586272-";
chr3	juncbase	jcn_only_AA	107594421	107594977	.	-	.	gene_id "jcn_only_AA.1279"; transcript_id "jcn_only_AA.1279"; gene_name ""; flanks "107594421-,107594977^"; structure "1-,2-"; splice_chain "107594421-,107591873-";
chr3	juncbase	cassette	49377357	49365249	.	-	.	gene_id "cassette.765"; transcript_id "cassette.765"; gene_name "CUFF.466"; flanks "49377357-,49365249^"; structure "0,1-2^"; splice_chain ",49373029-49372902^";
chr3	juncbase	jcn_only_AA	28333445	28357824	.	+	.	gene_id "jcn_only_AA.1280"; transcript_id "jcn_only_AA.1280"; gene_name ""; flanks "28333445-,28357824^"; structure "1-,2-"; splice_chain "28334227-,28357824-";
chr3	juncbase	alternative_donor	127317039	127313776	.	-	.	gene_id "alternative_donor.1356"; transcript_id "alternative_donor.1356"; gene_name ""; flanks "127317039-,127313776^"; structure "1^,2^"; splice_chain "127317039^,127314295^";
chr3	juncbase	jcn_only_AD	68055887	68466430	.	+	.	gene_id "jcn_only_AD.1627"; transcript_id "jcn_only_AD.1627"; gene_name "CUFF.478"; flanks "68055887-,68466430^"; structure "1^,2^"; splice_chain "68055887^,68300061^";
chr3	juncbase	alternative_acceptor	194063431	194071971	.	-	.	gene_id "alternative_acceptor.984"; transcript_id "alternative_acceptor.984"; gene_name "CUFF.576"; flanks "194063431-,194071971^"; structure "1-,2-"; splice_chain "194063434-,194063431-";
chr3	juncbase	jcn_only_AD	156266594	156262228	.	-	.	gene_id "jcn_only_AD.1628"; transcript_id "jcn_only_AD.1628"; gene_name "CUFF.561"; flanks "156266594-,156262228^"; structure "1^,2^"; splice_chain "156266694^,156266594^";
chr3	juncbase	jcn_only_AD	156266655	156262228	.	-	.	gene_id "jcn_only_AD.1629"; transcript_id "jcn_only_AD.1629"; gene_name "CUFF.561"; flanks "156266655-,156262228^"; structure "1^,2^"; splice_chain "156266694^,156266655^";
chr3	juncbase	intron_retention	28360370	28361000	.	+	.	gene_id "intron_retention.1036"; transcript_id "intron_retention.1036"; gene_name ""; flanks "28360370-,28361000^"; structure "0,1^2-"; splice_chain ",28360370^28361000-";
chr3	juncbase	alternative_donor	49362135	49349087	.	-	.	gene_id "alternative_donor.1357"; transcript_id "alternative_donor.1357"; gene_name "CUFF.466"; flanks "49362135-,49349087^"; structure "1^,2^"; splice_chain "49362135^,49355742^";
chr3	juncbase	alternative_donor	49351304	49349087	.	-	.	gene_id "alternative_donor.1358"; transcript_id "alternative_donor.1358"; gene_name "CUFF.466"; flanks "49351304-,49349087^"; structure "1^,2^"; splice_chain "49355742^,49351304^";
chr3	juncbase	jcn_only_AA	126139072	126142168	.	+	.	gene_id "jcn_only_AA.1281"; transcript_id "jcn_only_AA.1281"; gene_name "CUFF.538"; flanks "126139072-,126142168^"; structure "1-,2-"; splice_chain "126139473-,126142168-";
chr3	juncbase	intron_retention	125745236	125741775	.	-	.	gene_id "intron_retention.1037"; transcript_id "intron_retention.1037"; gene_name "CUFF.535"; flanks "125745236-,125741775^"; structure "0,1^2-"; splice_chain ",125745236^125741775-";
chr3	juncbase	jcn_only_AD	27236028	27233733	.	-	.	gene_id "jcn_only_AD.1630"; transcript_id "jcn_only_AD.1630"; gene_name ""; flanks "27236028-,27233733^"; structure "1^,2^"; splice_chain "27243001^,27236028^";
chr3	juncbase	jcn_only_AD	27235552	27233733	.	-	.	gene_id "jcn_only_AD.1631"; transcript_id "jcn_only_AD.1631"; gene_name ""; flanks "27235552-,27233733^"; structure "1^,2^"; splice_chain "27243001^,27235552^";
chr3	juncbase	intron_retention	38051395	38051302	.	-	.	gene_id "intron_retention.1038"; transcript_id "intron_retention.1038"; gene_name "CUFF.455"; flanks "38051395-,38051302^"; structure "0,1^2-"; splice_chain ",38051395^38051302-";
chr3	juncbase	alternative_donor	186660215	186681573	.	+	.	gene_id "alternative_donor.1359"; transcript_id "alternative_donor.1359"; gene_name "CUFF.569"; flanks "186660215-,186681573^"; structure "1^,2^"; splice_chain "186648927^,186660215^";
chr3	juncbase	alternative_donor	186649183	186681573	.	+	.	gene_id "alternative_donor.1360"; transcript_id "alternative_donor.1360"; gene_name "CUFF.569"; flanks "186649183-,186681573^"; structure "1^,2^"; splice_chain "186648927^,186649183^";
chr3	juncbase	alternative_donor	186648623	186681573	.	+	.	gene_id "alternative_donor.1361"; transcript_id "alternative_donor.1361"; gene_name "CUFF.569"; flanks "186648623-,186681573^"; structure "1^,2^"; splice_chain "186648623^,186648927^";
chr3	juncbase	alternative_donor	186666726	186681573	.	+	.	gene_id "alternative_donor.1362"; transcript_id "alternative_donor.1362"; gene_name "CUFF.569"; flanks "186666726-,186681573^"; structure "1^,2^"; splice_chain "186648927^,186666726^";
chr3	juncbase	intron_retention	33434055	33431860	.	-	.	gene_id "intron_retention.1039"; transcript_id "intron_retention.1039"; gene_name "CUFF.452"; flanks "33434055-,33431860^"; structure "0,1^2-"; splice_chain ",33434055^33431860-";
chr3	juncbase	alternative_donor	73482790	73453546	.	-	.	gene_id "alternative_donor.1363"; transcript_id "alternative_donor.1363"; gene_name "CUFF.487"; flanks "73482790-,73453546^"; structure "1^,2^"; splice_chain "73618302^,73482790^";
chr3	juncbase	alternative_donor	73610602	73453546	.	-	.	gene_id "alternative_donor.1364"; transcript_id "alternative_donor.1364"; gene_name "CUFF.487"; flanks "73610602-,73453546^"; structure "1^,2^"; splice_chain "73618302^,73610602^";
chr3	juncbase	alternative_donor	73651505	73453546	.	-	.	gene_id "alternative_donor.1365"; transcript_id "alternative_donor.1365"; gene_name "CUFF.487"; flanks "73651505-,73453546^"; structure "1^,2^"; splice_chain "73651505^,73618302^";
chr3	juncbase	alternative_donor	73523606	73453546	.	-	.	gene_id "alternative_donor.1366"; transcript_id "alternative_donor.1366"; gene_name "CUFF.487"; flanks "73523606-,73453546^"; structure "1^,2^"; splice_chain "73618302^,73523606^";
chr3	juncbase	alternative_donor	73605851	73453546	.	-	.	gene_id "alternative_donor.1367"; transcript_id "alternative_donor.1367"; gene_name "CUFF.487"; flanks "73605851-,73453546^"; structure "1^,2^"; splice_chain "73618302^,73605851^";
chr3	juncbase	alternative_donor	73453299	73450160	.	-	.	gene_id "alternative_donor.1368"; transcript_id "alternative_donor.1368"; gene_name "CUFF.487"; flanks "73453299-,73450160^"; structure "1^,2^"; splice_chain "73453299^,73450920^";
chr3	juncbase	alternative_donor	33557515	33552256	.	-	.	gene_id "alternative_donor.1369"; transcript_id "alternative_donor.1369"; gene_name "CUFF.450,CUFF.466"; flanks "33557515-,33552256^"; structure "1^,2^"; splice_chain "33557515^,33556072^";
chr3	juncbase	alternative_donor	73482790	73453546	.	-	.	gene_id "alternative_donor.1370"; transcript_id "alternative_donor.1370"; gene_name "CUFF.487"; flanks "73482790-,73453546^"; structure "1^,2^"; splice_chain "73610602^,73482790^";
chr3	juncbase	alternative_donor	73651505	73453546	.	-	.	gene_id "alternative_donor.1371"; transcript_id "alternative_donor.1371"; gene_name "CUFF.487"; flanks "73651505-,73453546^"; structure "1^,2^"; splice_chain "73651505^,73610602^";
chr3	juncbase	alternative_donor	73523606	73453546	.	-	.	gene_id "alternative_donor.1372"; transcript_id "alternative_donor.1372"; gene_name "CUFF.487"; flanks "73523606-,73453546^"; structure "1^,2^"; splice_chain "73610602^,73523606^";
chr3	juncbase	alternative_donor	73605851	73453546	.	-	.	gene_id "alternative_donor.1373"; transcript_id "alternative_donor.1373"; gene_name "CUFF.487"; flanks "73605851-,73453546^"; structure "1^,2^"; splice_chain "73610602^,73605851^";
chr3	juncbase	alternative_donor	73618302	73453546	.	-	.	gene_id "alternative_donor.1374"; transcript_id "alternative_donor.1374"; gene_name "CUFF.487"; flanks "73618302-,73453546^"; structure "1^,2^"; splice_chain "73618302^,73610602^";
chr3	juncbase	jcn_only_AD	28283392	28304782	.	+	.	gene_id "jcn_only_AD.1632"; transcript_id "jcn_only_AD.1632"; gene_name "CUFF.442"; flanks "28283392-,28304782^"; structure "1^,2^"; splice_chain "28283303^,28283392^";
chr3	juncbase	jcn_only_AD	28295256	28304782	.	+	.	gene_id "jcn_only_AD.1633"; transcript_id "jcn_only_AD.1633"; gene_name "CUFF.442"; flanks "28295256-,28304782^"; structure "1^,2^"; splice_chain "28283303^,28295256^";
chr3	juncbase	jcn_only_AA	107586272	107596160	.	-	.	gene_id "jcn_only_AA.1282"; transcript_id "jcn_only_AA.1282"; gene_name ""; flanks "107586272-,107596160^"; structure "1-,2-"; splice_chain "107595378-,107586272-";
chr3	juncbase	jcn_only_AA	107595033	107596160	.	-	.	gene_id "jcn_only_AA.1283"; transcript_id "jcn_only_AA.1283"; gene_name ""; flanks "107595033-,107596160^"; structure "1-,2-"; splice_chain "107595378-,107595033-";
chr3	juncbase	cassette	119255984	119246688	.	-	.	gene_id "cassette.766"; transcript_id "cassette.766"; gene_name "CUFF.514"; flanks "119255984-,119246688^"; structure "0,1-2^"; splice_chain ",119248784-119248689^";
chr3	juncbase	intron_retention	97662414	97663678	.	+	.	gene_id "intron_retention.1040"; transcript_id "intron_retention.1040"; gene_name "CUFF.500"; flanks "97662414-,97663678^"; structure "0,1^2-"; splice_chain ",97662414^97663678-";
chr3	juncbase	jcn_only_AA	107572901	107573977	.	-	.	gene_id "jcn_only_AA.1284"; transcript_id "jcn_only_AA.1284"; gene_name "CUFF.504"; flanks "107572901-,107573977^"; structure "1-,2-"; splice_chain "107572901-,107572806-";
chr3	juncbase	jcn_only_AA	107573541	107573977	.	-	.	gene_id "jcn_only_AA.1285"; transcript_id "jcn_only_AA.1285"; gene_name "CUFF.504"; flanks "107573541-,107573977^"; structure "1-,2-"; splice_chain "107573541-,107572806-";
chr3	juncbase	jcn_only_AA	120396876	120400944	.	-	.	gene_id "jcn_only_AA.1286"; transcript_id "jcn_only_AA.1286"; gene_name "CUFF.522"; flanks "120396876-,120400944^"; structure "1-,2-"; splice_chain "120396876-,120394710-";
chr3	juncbase	jcn_only_AA	120396838	120400944	.	-	.	gene_id "jcn_only_AA.1287"; transcript_id "jcn_only_AA.1287"; gene_name "CUFF.522"; flanks "120396838-,120400944^"; structure "1-,2-"; splice_chain "120396838-,120394710-";
chr3	juncbase	intron_retention	73433800	73432956	.	-	.	gene_id "intron_retention.1041"; transcript_id "intron_retention.1041"; gene_name "CUFF.487"; flanks "73433800-,73432956^"; structure "0,1^2-"; splice_chain ",73433800^73432956-";
chr3	juncbase	cassette	127294783	127294108	.	-	.	gene_id "cassette.767"; transcript_id "cassette.767"; gene_name "CUFF.542"; flanks "127294783-,127294108^"; structure "0,1-2^"; splice_chain ",127294652-127294592^";
chr3	juncbase	cassette	127294783	127294348	.	-	.	gene_id "cassette.768"; transcript_id "cassette.768"; gene_name "CUFF.542"; flanks "127294783-,127294348^"; structure "0,1-2^"; splice_chain ",127294652-127294592^";
chr3	juncbase	alternative_donor	156262097	156261058	.	-	.	gene_id "alternative_donor.1375"; transcript_id "alternative_donor.1375"; gene_name "CUFF.561"; flanks "156262097-,156261058^"; structure "1^,2^"; splice_chain "156262097^,156262083^";
chr3	juncbase	alternative_acceptor	127299006	127309253	.	-	.	gene_id "alternative_acceptor.985"; transcript_id "alternative_acceptor.985"; gene_name "CUFF.542"; flanks "127299006-,127309253^"; structure "1-,2-"; splice_chain "127307003-,127299006-";
chr3	juncbase	alternative_donor	186660215	186681573	.	+	.	gene_id "alternative_donor.1376"; transcript_id "alternative_donor.1376"; gene_name "CUFF.569"; flanks "186660215-,186681573^"; structure "1^,2^"; splice_chain "186648623^,186660215^";
chr3	juncbase	alternative_donor	186649183	186681573	.	+	.	gene_id "alternative_donor.1377"; transcript_id "alternative_donor.1377"; gene_name "CUFF.569"; flanks "186649183-,186681573^"; structure "1^,2^"; splice_chain "186648623^,186649183^";
chr3	juncbase	alternative_donor	186648927	186681573	.	+	.	gene_id "alternative_donor.1378"; transcript_id "alternative_donor.1378"; gene_name "CUFF.569"; flanks "186648927-,186681573^"; structure "1^,2^"; splice_chain "186648623^,186648927^";
chr3	juncbase	alternative_donor	186666726	186681573	.	+	.	gene_id "alternative_donor.1379"; transcript_id "alternative_donor.1379"; gene_name "CUFF.569"; flanks "186666726-,186681573^"; structure "1^,2^"; splice_chain "186648623^,186666726^";
chr3	juncbase	alternative_donor	186649183	186681573	.	+	.	gene_id "alternative_donor.1380"; transcript_id "alternative_donor.1380"; gene_name "CUFF.569"; flanks "186649183-,186681573^"; structure "1^,2^"; splice_chain "186649183^,186660215^";
chr3	juncbase	alternative_donor	186648623	186681573	.	+	.	gene_id "alternative_donor.1381"; transcript_id "alternative_donor.1381"; gene_name "CUFF.569"; flanks "186648623-,186681573^"; structure "1^,2^"; splice_chain "186648623^,186660215^";
chr3	juncbase	alternative_donor	186648927	186681573	.	+	.	gene_id "alternative_donor.1382"; transcript_id "alternative_donor.1382"; gene_name "CUFF.569"; flanks "186648927-,186681573^"; structure "1^,2^"; splice_chain "186648927^,186660215^";
chr3	juncbase	alternative_donor	186666726	186681573	.	+	.	gene_id "alternative_donor.1383"; transcript_id "alternative_donor.1383"; gene_name "CUFF.569"; flanks "186666726-,186681573^"; structure "1^,2^"; splice_chain "186660215^,186666726^";
chr3	juncbase	jcn_only_AA	125032500	125042153	.	-	.	gene_id "jcn_only_AA.1288"; transcript_id "jcn_only_AA.1288"; gene_name "CUFF.528"; flanks "125032500-,125042153^"; structure "1-,2-"; splice_chain "125033897-,125032500-";
chr3	juncbase	cassette	38315866	38316480	.	+	.	gene_id "cassette.769"; transcript_id "cassette.769"; gene_name "CUFF.456"; flanks "38315866-,38316480^"; structure "0,1-2^"; splice_chain ",38316095-38316249^";
chr3	juncbase	alternative_acceptor	122864439	122864965	.	+	.	gene_id "alternative_acceptor.986"; transcript_id "alternative_acceptor.986"; gene_name "CUFF.524"; flanks "122864439-,122864965^"; structure "1-,2-"; splice_chain "122864946-,122864965-";
chr3	juncbase	cassette	107572720	107568818	.	-	.	gene_id "cassette.770"; transcript_id "cassette.770"; gene_name "CUFF.504"; flanks "107572720-,107568818^"; structure "0,1-2^"; splice_chain ",107569198-107569144^";
chr3	juncbase	cassette	141747421	141697524	.	-	.	gene_id "cassette.771"; transcript_id "cassette.771"; gene_name "CUFF.554"; flanks "141747421-,141697524^"; structure "0,1-2^"; splice_chain ",141724386-141724283^";
chr3	juncbase	cassette	141811903	141713983	.	-	.	gene_id "cassette.772"; transcript_id "cassette.772"; gene_name "CUFF.554"; flanks "141811903-,141713983^"; structure "0,1-2^"; splice_chain ",141724386-141724283^";
chr3	juncbase	cassette	141747421	141713983	.	-	.	gene_id "cassette.773"; transcript_id "cassette.773"; gene_name "CUFF.554"; flanks "141747421-,141713983^"; structure "0,1-2^"; splice_chain ",141724386-141724283^";
chr3	juncbase	alternative_donor	107573977	107572901	.	-	.	gene_id "alternative_donor.1384"; transcript_id "alternative_donor.1384"; gene_name "CUFF.504"; flanks "107573977-,107572901^"; structure "1^,2^"; splice_chain "107573977^,107573501^";
chr3	juncbase	intron_retention	124953144	124951498	.	-	.	gene_id "intron_retention.1042"; transcript_id "intron_retention.1042"; gene_name "CUFF.528"; flanks "124953144-,124951498^"; structure "0,1^2-"; splice_chain ",124953144^124951498-";
chr3	juncbase	jcn_only_AD	178866007	178916538	.	+	.	gene_id "jcn_only_AD.1634"; transcript_id "jcn_only_AD.1634"; gene_name "CUFF.566"; flanks "178866007-,178916538^"; structure "1^,2^"; splice_chain "178866007^,178867504^";
chr3	juncbase	intron_retention	33438537	33438370	.	-	.	gene_id "intron_retention.1043"; transcript_id "intron_retention.1043"; gene_name "CUFF.452"; flanks "33438537-,33438370^"; structure "0,1^2-"; splice_chain ",33438537^33438370-";
chr3	juncbase	jcn_only_AA	120394710	120400944	.	-	.	gene_id "jcn_only_AA.1289"; transcript_id "jcn_only_AA.1289"; gene_name "CUFF.522"; flanks "120394710-,120400944^"; structure "1-,2-"; splice_chain "120396838-,120394710-";
chr3	juncbase	jcn_only_AA	120396876	120400944	.	-	.	gene_id "jcn_only_AA.1290"; transcript_id "jcn_only_AA.1290"; gene_name "CUFF.522"; flanks "120396876-,120400944^"; structure "1-,2-"; splice_chain "120396876-,120396838-";
chr3	juncbase	jcn_only_AD	28283303	28304782	.	+	.	gene_id "jcn_only_AD.1635"; transcript_id "jcn_only_AD.1635"; gene_name "CUFF.442"; flanks "28283303-,28304782^"; structure "1^,2^"; splice_chain "28283303^,28283392^";
chr3	juncbase	jcn_only_AD	28295256	28304782	.	+	.	gene_id "jcn_only_AD.1636"; transcript_id "jcn_only_AD.1636"; gene_name "CUFF.442"; flanks "28295256-,28304782^"; structure "1^,2^"; splice_chain "28283392^,28295256^";
chr3	juncbase	jcn_only_AD	156266594	156262228	.	-	.	gene_id "jcn_only_AD.1637"; transcript_id "jcn_only_AD.1637"; gene_name "CUFF.561"; flanks "156266594-,156262228^"; structure "1^,2^"; splice_chain "156266655^,156266594^";
chr3	juncbase	jcn_only_AD	156266694	156262228	.	-	.	gene_id "jcn_only_AD.1638"; transcript_id "jcn_only_AD.1638"; gene_name "CUFF.561"; flanks "156266694-,156262228^"; structure "1^,2^"; splice_chain "156266694^,156266655^";
chr3	juncbase	jcn_only_AA	57569787	57570111	.	-	.	gene_id "jcn_only_AA.1291"; transcript_id "jcn_only_AA.1291"; gene_name "CUFF.477"; flanks "57569787-,57570111^"; structure "1-,2-"; splice_chain "57569787-,57569759-";
chr3	juncbase	jcn_only_AA	57569734	57570111	.	-	.	gene_id "jcn_only_AA.1292"; transcript_id "jcn_only_AA.1292"; gene_name "CUFF.477"; flanks "57569734-,57570111^"; structure "1-,2-"; splice_chain "57569759-,57569734-";
chr3	juncbase	cassette	141724283	141697524	.	-	.	gene_id "cassette.774"; transcript_id "cassette.774"; gene_name "CUFF.554"; flanks "141724283-,141697524^"; structure "0,1-2^"; splice_chain ",141712427-141712380^";
chr3	juncbase	cassette	141713862	141697524	.	-	.	gene_id "cassette.775"; transcript_id "cassette.775"; gene_name "CUFF.554"; flanks "141713862-,141697524^"; structure "0,1-2^"; splice_chain ",141712427-141712380^";
chr3	juncbase	jcn_only_AA	122864439	122864965	.	+	.	gene_id "jcn_only_AA.1293"; transcript_id "jcn_only_AA.1293"; gene_name "CUFF.524"; flanks "122864439-,122864965^"; structure "1-,2-"; splice_chain "122864946-,122864965-";
chr3	juncbase	jcn_only_AA	133407208	133419726	.	+	.	gene_id "jcn_only_AA.1294"; transcript_id "jcn_only_AA.1294"; gene_name "CUFF.546"; flanks "133407208-,133419726^"; structure "1-,2-"; splice_chain "133418749-,133419726-";
chr3	juncbase	jcn_only_AA	133407208	133410567	.	+	.	gene_id "jcn_only_AA.1295"; transcript_id "jcn_only_AA.1295"; gene_name "CUFF.546"; flanks "133407208-,133410567^"; structure "1-,2-"; splice_chain "133410567-,133418749-";
chr3	juncbase	cassette	27410716	27394410	.	-	.	gene_id "cassette.776"; transcript_id "cassette.776"; gene_name "CUFF.441"; flanks "27410716-,27394410^"; structure "0,1-2^"; splice_chain ",27409053-27409014^";
chr3	juncbase	cassette	125820272	125769893	.	-	.	gene_id "cassette.777"; transcript_id "cassette.777"; gene_name "CUFF.535"; flanks "125820272-,125769893^"; structure "0,1-2^"; splice_chain ",125787089-125786790^";
chr3	juncbase	alternative_donor	156266594	156262228	.	-	.	gene_id "alternative_donor.1385"; transcript_id "alternative_donor.1385"; gene_name "CUFF.561"; flanks "156266594-,156262228^"; structure "1^,2^"; splice_chain "156266694^,156266594^";
chr3	juncbase	alternative_donor	156266655	156262228	.	-	.	gene_id "alternative_donor.1386"; transcript_id "alternative_donor.1386"; gene_name "CUFF.561"; flanks "156266655-,156262228^"; structure "1^,2^"; splice_chain "156266694^,156266655^";
chr3	juncbase	jcn_only_AD	186660215	186681573	.	+	.	gene_id "jcn_only_AD.1639"; transcript_id "jcn_only_AD.1639"; gene_name "CUFF.569"; flanks "186660215-,186681573^"; structure "1^,2^"; splice_chain "186660215^,186666726^";
chr3	juncbase	jcn_only_AD	186649183	186681573	.	+	.	gene_id "jcn_only_AD.1640"; transcript_id "jcn_only_AD.1640"; gene_name "CUFF.569"; flanks "186649183-,186681573^"; structure "1^,2^"; splice_chain "186649183^,186666726^";
chr3	juncbase	jcn_only_AD	186648623	186681573	.	+	.	gene_id "jcn_only_AD.1641"; transcript_id "jcn_only_AD.1641"; gene_name "CUFF.569"; flanks "186648623-,186681573^"; structure "1^,2^"; splice_chain "186648623^,186666726^";
chr3	juncbase	jcn_only_AD	186648927	186681573	.	+	.	gene_id "jcn_only_AD.1642"; transcript_id "jcn_only_AD.1642"; gene_name "CUFF.569"; flanks "186648927-,186681573^"; structure "1^,2^"; splice_chain "186648927^,186666726^";
chr3	juncbase	jcn_only_AD	107594306	107591873	.	-	.	gene_id "jcn_only_AD.1643"; transcript_id "jcn_only_AD.1643"; gene_name ""; flanks "107594306-,107591873^"; structure "1^,2^"; splice_chain "107594977^,107594306^";
chr3	juncbase	jcn_only_AD	107596749	107591873	.	-	.	gene_id "jcn_only_AD.1644"; transcript_id "jcn_only_AD.1644"; gene_name ""; flanks "107596749-,107591873^"; structure "1^,2^"; splice_chain "107596749^,107594977^";
chr3	juncbase	alternative_acceptor	57569787	57570111	.	-	.	gene_id "alternative_acceptor.987"; transcript_id "alternative_acceptor.987"; gene_name "CUFF.477"; flanks "57569787-,57570111^"; structure "1-,2-"; splice_chain "57569787-,57569759-";
chr3	juncbase	alternative_acceptor	57569734	57570111	.	-	.	gene_id "alternative_acceptor.988"; transcript_id "alternative_acceptor.988"; gene_name "CUFF.477"; flanks "57569734-,57570111^"; structure "1-,2-"; splice_chain "57569759-,57569734-";
chr3	juncbase	alternative_donor	107596749	107586424	.	-	.	gene_id "alternative_donor.1387"; transcript_id "alternative_donor.1387"; gene_name ""; flanks "107596749-,107586424^"; structure "1^,2^"; splice_chain "107596749^,107591815^";
chr3	juncbase	alternative_donor	107591173	107586424	.	-	.	gene_id "alternative_donor.1388"; transcript_id "alternative_donor.1388"; gene_name ""; flanks "107591173-,107586424^"; structure "1^,2^"; splice_chain "107591815^,107591173^";
chr3	juncbase	alternative_donor	112046541	112048193	.	+	.	gene_id "alternative_donor.1389"; transcript_id "alternative_donor.1389"; gene_name "CUFF.509"; flanks "112046541-,112048193^"; structure "1^,2^"; splice_chain "112046541^,112046553^";
chr3	juncbase	jcn_only_AA	49349087	49355742	.	-	.	gene_id "jcn_only_AA.1296"; transcript_id "jcn_only_AA.1296"; gene_name ""; flanks "49349087-,49355742^"; structure "1-,2-"; splice_chain "49354911-,49349087-";
chr3	juncbase	alternative_donor	49355742	49349087	.	-	.	gene_id "alternative_donor.1390"; transcript_id "alternative_donor.1390"; gene_name "CUFF.466"; flanks "49355742-,49349087^"; structure "1^,2^"; splice_chain "49355742^,49351304^";
chr3	juncbase	alternative_donor	49362135	49349087	.	-	.	gene_id "alternative_donor.1391"; transcript_id "alternative_donor.1391"; gene_name "CUFF.466"; flanks "49362135-,49349087^"; structure "1^,2^"; splice_chain "49362135^,49351304^";
chr3	juncbase	jcn_only_AD	71778225	71777774	.	-	.	gene_id "jcn_only_AD.1645"; transcript_id "jcn_only_AD.1645"; gene_name "CUFF.483"; flanks "71778225-,71777774^"; structure "1^,2^"; splice_chain "71802614^,71778225^";
chr3	juncbase	jcn_only_AD	71803795	71777774	.	-	.	gene_id "jcn_only_AD.1646"; transcript_id "jcn_only_AD.1646"; gene_name "CUFF.483"; flanks "71803795-,71777774^"; structure "1^,2^"; splice_chain "71803795^,71802614^";
chr3	juncbase	jcn_only_AD	71803366	71777774	.	-	.	gene_id "jcn_only_AD.1647"; transcript_id "jcn_only_AD.1647"; gene_name "CUFF.483"; flanks "71803366-,71777774^"; structure "1^,2^"; splice_chain "71803366^,71802614^";
chr3	juncbase	intron_retention	38051144	38050922	.	-	.	gene_id "intron_retention.1044"; transcript_id "intron_retention.1044"; gene_name "CUFF.455"; flanks "38051144-,38050922^"; structure "0,1^2-"; splice_chain ",38051144^38050922-";
chr3	juncbase	alternative_acceptor	107572901	107573977	.	-	.	gene_id "alternative_acceptor.989"; transcript_id "alternative_acceptor.989"; gene_name "CUFF.504"; flanks "107572901-,107573977^"; structure "1-,2-"; splice_chain "107572901-,107572806-";
chr3	juncbase	alternative_acceptor	107573541	107573977	.	-	.	gene_id "alternative_acceptor.990"; transcript_id "alternative_acceptor.990"; gene_name "CUFF.504"; flanks "107573541-,107573977^"; structure "1-,2-"; splice_chain "107573541-,107572806-";
chr3	juncbase	jcn_only_AA	57569759	57570111	.	-	.	gene_id "jcn_only_AA.1297"; transcript_id "jcn_only_AA.1297"; gene_name "CUFF.477"; flanks "57569759-,57570111^"; structure "1-,2-"; splice_chain "57569759-,57569734-";
chr3	juncbase	jcn_only_AA	57569787	57570111	.	-	.	gene_id "jcn_only_AA.1298"; transcript_id "jcn_only_AA.1298"; gene_name "CUFF.477"; flanks "57569787-,57570111^"; structure "1-,2-"; splice_chain "57569787-,57569734-";
chr3	juncbase	jcn_only_AA	126135351	126137301	.	+	.	gene_id "jcn_only_AA.1299"; transcript_id "jcn_only_AA.1299"; gene_name ""; flanks "126135351-,126137301^"; structure "1-,2-"; splice_chain "126137298-,126137301-";
chr3	juncbase	jcn_only_AA	126135351	126135615	.	+	.	gene_id "jcn_only_AA.1300"; transcript_id "jcn_only_AA.1300"; gene_name ""; flanks "126135351-,126135615^"; structure "1-,2-"; splice_chain "126135615-,126137298-";
chr3	juncbase	cassette	141868025	141724386	.	-	.	gene_id "cassette.778"; transcript_id "cassette.778"; gene_name "CUFF.554"; flanks "141868025-,141724386^"; structure "0,1-2^"; splice_chain ",141772991-141772957^";
chr3	juncbase	cassette	141811903	141724386	.	-	.	gene_id "cassette.779"; transcript_id "cassette.779"; gene_name "CUFF.554"; flanks "141811903-,141724386^"; structure "0,1-2^"; splice_chain ",141772991-141772957^";
chr3	juncbase	cassette	120360436	120352437	.	-	.	gene_id "cassette.780"; transcript_id "cassette.780"; gene_name "CUFF.522"; flanks "120360436-,120352437^"; structure "0,1-2^"; splice_chain ",120357428-120357302^";
chr3	juncbase	cassette	120360436	120352175	.	-	.	gene_id "cassette.781"; transcript_id "cassette.781"; gene_name "CUFF.522"; flanks "120360436-,120352175^"; structure "0,1-2^"; splice_chain ",120357428-120357302^";
chr3	juncbase	jcn_only_AA	49462486	49462800	.	-	.	gene_id "jcn_only_AA.1301"; transcript_id "jcn_only_AA.1301"; gene_name "CUFF.468"; flanks "49462486-,49462800^"; structure "1-,2-"; splice_chain "49462579-,49462486-";
chr3	juncbase	jcn_only_AA	107591327	107591815	.	-	.	gene_id "jcn_only_AA.1302"; transcript_id "jcn_only_AA.1302"; gene_name "CUFF.504"; flanks "107591327-,107591815^"; structure "1-,2-"; splice_chain "107591327-,107576049-";
chr3	juncbase	jcn_only_AA	107586272	107591815	.	-	.	gene_id "jcn_only_AA.1303"; transcript_id "jcn_only_AA.1303"; gene_name "CUFF.504"; flanks "107586272-,107591815^"; structure "1-,2-"; splice_chain "107586272-,107576049-";
chr3	juncbase	jcn_only_AA	107586424	107591815	.	-	.	gene_id "jcn_only_AA.1304"; transcript_id "jcn_only_AA.1304"; gene_name "CUFF.504"; flanks "107586424-,107591815^"; structure "1-,2-"; splice_chain "107586424-,107576049-";
chr3	juncbase	jcn_only_AD	107591815	107586272	.	-	.	gene_id "jcn_only_AD.1648"; transcript_id "jcn_only_AD.1648"; gene_name ""; flanks "107591815-,107586272^"; structure "1^,2^"; splice_chain "107594977^,107591815^";
chr3	juncbase	jcn_only_AD	107596160	107586272	.	-	.	gene_id "jcn_only_AD.1649"; transcript_id "jcn_only_AD.1649"; gene_name ""; flanks "107596160-,107586272^"; structure "1^,2^"; splice_chain "107596160^,107594977^";
chr3	juncbase	jcn_only_AA	27329234	27332753	.	-	.	gene_id "jcn_only_AA.1305"; transcript_id "jcn_only_AA.1305"; gene_name ""; flanks "27329234-,27332753^"; structure "1-,2-"; splice_chain "27332245-,27329234-";
chr3	juncbase	alternative_acceptor	28333445	28357824	.	+	.	gene_id "alternative_acceptor.991"; transcript_id "alternative_acceptor.991"; gene_name ""; flanks "28333445-,28357824^"; structure "1-,2-"; splice_chain "28334227-,28357824-";
chr3	juncbase	jcn_only_AD	33612219	33602463	.	-	.	gene_id "jcn_only_AD.1650"; transcript_id "jcn_only_AD.1650"; gene_name "CUFF.450"; flanks "33612219-,33602463^"; structure "1^,2^"; splice_chain "33612219^,33605456^";
chr3	juncbase	jcn_only_AA	127299006	127313643	.	-	.	gene_id "jcn_only_AA.1306"; transcript_id "jcn_only_AA.1306"; gene_name "CUFF.542"; flanks "127299006-,127313643^"; structure "1-,2-"; splice_chain "127310793-,127299006-";
chr3	juncbase	alternative_acceptor	19992553	20017093	.	+	.	gene_id "alternative_acceptor.992"; transcript_id "alternative_acceptor.992"; gene_name "CUFF.432"; flanks "19992553-,20017093^"; structure "1-,2-"; splice_chain "20017093-,20017135-";
chr3	juncbase	alternative_acceptor	19992553	20017079	.	+	.	gene_id "alternative_acceptor.993"; transcript_id "alternative_acceptor.993"; gene_name "CUFF.432"; flanks "19992553-,20017079^"; structure "1-,2-"; splice_chain "20017079-,20017135-";
chr3	juncbase	alternative_acceptor	19992553	20012040	.	+	.	gene_id "alternative_acceptor.994"; transcript_id "alternative_acceptor.994"; gene_name "CUFF.432"; flanks "19992553-,20012040^"; structure "1-,2-"; splice_chain "20012040-,20017135-";
chr3	juncbase	cassette	186739792	186756530	.	+	.	gene_id "cassette.782"; transcript_id "cassette.782"; gene_name "CUFF.569"; flanks "186739792-,186756530^"; structure "0,1-2^"; splice_chain ",186756180-186756279^";
chr3	juncbase	alternative_donor	49355742	49349087	.	-	.	gene_id "alternative_donor.1392"; transcript_id "alternative_donor.1392"; gene_name ""; flanks "49355742-,49349087^"; structure "1^,2^"; splice_chain "49362135^,49355742^";
chr3	juncbase	alternative_donor	49351304	49349087	.	-	.	gene_id "alternative_donor.1393"; transcript_id "alternative_donor.1393"; gene_name ""; flanks "49351304-,49349087^"; structure "1^,2^"; splice_chain "49362135^,49351304^";
chr3	juncbase	cassette	155523386	155520380	.	-	.	gene_id "cassette.783"; transcript_id "cassette.783"; gene_name "CUFF.558"; flanks "155523386-,155520380^"; structure "0,1-2^"; splice_chain ",155521962-155521840^";
chr3	juncbase	intron_retention	33481951	33481348	.	-	.	gene_id "intron_retention.1045"; transcript_id "intron_retention.1045"; gene_name "CUFF.452"; flanks "33481951-,33481348^"; structure "0,1^2-"; splice_chain ",33481951^33481348-";
chr3	juncbase	jcn_only_AD	107595282	107595033	.	-	.	gene_id "jcn_only_AD.1651"; transcript_id "jcn_only_AD.1651"; gene_name ""; flanks "107595282-,107595033^"; structure "1^,2^"; splice_chain "107596749^,107595282^";
chr3	juncbase	jcn_only_AD	107595302	107595033	.	-	.	gene_id "jcn_only_AD.1652"; transcript_id "jcn_only_AD.1652"; gene_name ""; flanks "107595302-,107595033^"; structure "1^,2^"; splice_chain "107596749^,107595302^";
chr3	juncbase	jcn_only_AD	107596160	107595033	.	-	.	gene_id "jcn_only_AD.1653"; transcript_id "jcn_only_AD.1653"; gene_name ""; flanks "107596160-,107595033^"; structure "1^,2^"; splice_chain "107596749^,107596160^";
chr3	juncbase	jcn_only_AD	57583366	57582950	.	-	.	gene_id "jcn_only_AD.1654"; transcript_id "jcn_only_AD.1654"; gene_name ""; flanks "57583366-,57582950^"; structure "1^,2^"; splice_chain "57583366^,57583059^";
chr3	juncbase	jcn_only_AD	125042232	124996653	.	-	.	gene_id "jcn_only_AD.1655"; transcript_id "jcn_only_AD.1655"; gene_name "CUFF.507,CUFF.528"; flanks "125042232-,124996653^"; structure "1^,2^"; splice_chain "125042232^,124997968^";
chr3	juncbase	jcn_only_AD	125042153	125032500	.	-	.	gene_id "jcn_only_AD.1656"; transcript_id "jcn_only_AD.1656"; gene_name "CUFF.528"; flanks "125042153-,125032500^"; structure "1^,2^"; splice_chain "125042153^,125033781^";
chr3	juncbase	jcn_only_AD	125042232	125032500	.	-	.	gene_id "jcn_only_AD.1657"; transcript_id "jcn_only_AD.1657"; gene_name "CUFF.528"; flanks "125042232-,125032500^"; structure "1^,2^"; splice_chain "125042232^,125033781^";
chr3	juncbase	jcn_only_AD	27332753	27329234	.	-	.	gene_id "jcn_only_AD.1658"; transcript_id "jcn_only_AD.1658"; gene_name "CUFF.535"; flanks "27332753-,27329234^"; structure "1^,2^"; splice_chain "27332753^,27332108^";
chr3	juncbase	cassette	155523928	155520380	.	-	.	gene_id "cassette.784"; transcript_id "cassette.784"; gene_name "CUFF.558"; flanks "155523928-,155520380^"; structure "0,1-2^"; splice_chain ",155523512-155523386^";
chr3	juncbase	jcn_only_AD	124953144	124951498	.	-	.	gene_id "jcn_only_AD.1659"; transcript_id "jcn_only_AD.1659"; gene_name "CUFF.528"; flanks "124953144-,124951498^"; structure "1^,2^"; splice_chain "124953144^,124951953^";
chr3	juncbase	alternative_acceptor	33673863	33686249	.	-	.	gene_id "alternative_acceptor.995"; transcript_id "alternative_acceptor.995"; gene_name "CUFF.450"; flanks "33673863-,33686249^"; structure "1-,2-"; splice_chain "33673866-,33673863-";
chr3	juncbase	jcn_only_AA	107586272	107594977	.	-	.	gene_id "jcn_only_AA.1307"; transcript_id "jcn_only_AA.1307"; gene_name ""; flanks "107586272-,107594977^"; structure "1-,2-"; splice_chain "107594421-,107586272-";
chr3	juncbase	jcn_only_AA	107591873	107594977	.	-	.	gene_id "jcn_only_AA.1308"; transcript_id "jcn_only_AA.1308"; gene_name ""; flanks "107591873-,107594977^"; structure "1-,2-"; splice_chain "107594421-,107591873-";
chr3	juncbase	jcn_only_AA	33638226	33644444	.	-	.	gene_id "jcn_only_AA.1309"; transcript_id "jcn_only_AA.1309"; gene_name "CUFF.450"; flanks "33638226-,33644444^"; structure "1-,2-"; splice_chain "33644081-,33638226-";
chr3	juncbase	jcn_only_AD	73453299	73450160	.	-	.	gene_id "jcn_only_AD.1660"; transcript_id "jcn_only_AD.1660"; gene_name "CUFF.487"; flanks "73453299-,73450160^"; structure "1^,2^"; splice_chain "73453299^,73450920^";
chr3	juncbase	alternative_donor	71778225	71777774	.	-	.	gene_id "alternative_donor.1394"; transcript_id "alternative_donor.1394"; gene_name "CUFF.483"; flanks "71778225-,71777774^"; structure "1^,2^"; splice_chain "71802614^,71778225^";
chr3	juncbase	alternative_donor	71803795	71777774	.	-	.	gene_id "alternative_donor.1395"; transcript_id "alternative_donor.1395"; gene_name "CUFF.483"; flanks "71803795-,71777774^"; structure "1^,2^"; splice_chain "71803795^,71802614^";
chr3	juncbase	alternative_donor	71803366	71777774	.	-	.	gene_id "alternative_donor.1396"; transcript_id "alternative_donor.1396"; gene_name "CUFF.483"; flanks "71803366-,71777774^"; structure "1^,2^"; splice_chain "71803366^,71802614^";
chr3	juncbase	cassette	126114892	126126015	.	+	.	gene_id "cassette.785"; transcript_id "cassette.785"; gene_name "CUFF.538"; flanks "126114892-,126126015^"; structure "0,1-2^"; splice_chain ",126115333-126115522^";
chr3	juncbase	intron_retention	122880302	122880727	.	+	.	gene_id "intron_retention.1046"; transcript_id "intron_retention.1046"; gene_name "CUFF.524"; flanks "122880302-,122880727^"; structure "0,1^2-"; splice_chain ",122880302^122880727-";
chr3	juncbase	alternative_acceptor	141693033	141697362	.	-	.	gene_id "alternative_acceptor.996"; transcript_id "alternative_acceptor.996"; gene_name "CUFF.554"; flanks "141693033-,141697362^"; structure "1-,2-"; splice_chain "141693036-,141693033-";
chr3	juncbase	intron_retention	38051622	38051544	.	-	.	gene_id "intron_retention.1047"; transcript_id "intron_retention.1047"; gene_name "CUFF.455"; flanks "38051622-,38051544^"; structure "0,1^2-"; splice_chain ",38051622^38051544-";
chr3	juncbase	jcn_only_AA	107586424	107596749	.	-	.	gene_id "jcn_only_AA.1310"; transcript_id "jcn_only_AA.1310"; gene_name ""; flanks "107586424-,107596749^"; structure "1-,2-"; splice_chain "107595033-,107586424-";
chr3	juncbase	jcn_only_AA	107591873	107596749	.	-	.	gene_id "jcn_only_AA.1311"; transcript_id "jcn_only_AA.1311"; gene_name ""; flanks "107591873-,107596749^"; structure "1-,2-"; splice_chain "107595033-,107591873-";
chr3	juncbase	jcn_only_AA	107596344	107596749	.	-	.	gene_id "jcn_only_AA.1312"; transcript_id "jcn_only_AA.1312"; gene_name ""; flanks "107596344-,107596749^"; structure "1-,2-"; splice_chain "107596344-,107595033-";
chr3	juncbase	cassette	49318177	49315884	.	-	.	gene_id "cassette.786"; transcript_id "cassette.786"; gene_name "CUFF.466"; flanks "49318177-,49315884^"; structure "0,1-2^"; splice_chain ",49316335-49316247^";
chr3	juncbase	alternative_donor	71778225	71777774	.	-	.	gene_id "alternative_donor.1397"; transcript_id "alternative_donor.1397"; gene_name "CUFF.483"; flanks "71778225-,71777774^"; structure "1^,2^"; splice_chain "71803795^,71778225^";
chr3	juncbase	alternative_donor	71802614	71777774	.	-	.	gene_id "alternative_donor.1398"; transcript_id "alternative_donor.1398"; gene_name "CUFF.483"; flanks "71802614-,71777774^"; structure "1^,2^"; splice_chain "71803795^,71802614^";
chr3	juncbase	alternative_donor	71803366	71777774	.	-	.	gene_id "alternative_donor.1399"; transcript_id "alternative_donor.1399"; gene_name "CUFF.483"; flanks "71803366-,71777774^"; structure "1^,2^"; splice_chain "71803795^,71803366^";
chr3	juncbase	cassette	57582801	57569734	.	-	.	gene_id "cassette.787"; transcript_id "cassette.787"; gene_name "CUFF.477"; flanks "57582801-,57569734^"; structure "0,1-2^"; splice_chain ",57570191-57570111^";
chr3	juncbase	cassette	57582801	57563114	.	-	.	gene_id "cassette.788"; transcript_id "cassette.788"; gene_name "CUFF.477"; flanks "57582801-,57563114^"; structure "0,1-2^"; splice_chain ",57570191-57570111^";
chr3	juncbase	jcn_only_AD	107591173	107586424	.	-	.	gene_id "jcn_only_AD.1661"; transcript_id "jcn_only_AD.1661"; gene_name ""; flanks "107591173-,107586424^"; structure "1^,2^"; splice_chain "107596749^,107591173^";
chr3	juncbase	jcn_only_AD	107591815	107586424	.	-	.	gene_id "jcn_only_AD.1662"; transcript_id "jcn_only_AD.1662"; gene_name ""; flanks "107591815-,107586424^"; structure "1^,2^"; splice_chain "107596749^,107591815^";
chr3	juncbase	alternative_donor	49339871	49338124	.	-	.	gene_id "alternative_donor.1400"; transcript_id "alternative_donor.1400"; gene_name "CUFF.461"; flanks "49339871-,49338124^"; structure "1^,2^"; splice_chain "49339871^,49339817^";
chr3	juncbase	cassette	186648623	186769037	.	+	.	gene_id "cassette.789"; transcript_id "cassette.789"; gene_name "CUFF.569"; flanks "186648623-,186769037^"; structure "0,1-2^"; splice_chain ",186681573-186681714^";
chr3	juncbase	alternative_acceptor	107585600	107586158	.	-	.	gene_id "alternative_acceptor.997"; transcript_id "alternative_acceptor.997"; gene_name ""; flanks "107585600-,107586158^"; structure "1-,2-"; splice_chain "107585600-,107578108-";
chr3	juncbase	alternative_acceptor	107576049	107586158	.	-	.	gene_id "alternative_acceptor.998"; transcript_id "alternative_acceptor.998"; gene_name ""; flanks "107576049-,107586158^"; structure "1-,2-"; splice_chain "107578108-,107576049-";
chr3	juncbase	jcn_only_AA	126135351	126137298	.	+	.	gene_id "jcn_only_AA.1313"; transcript_id "jcn_only_AA.1313"; gene_name "CUFF.538"; flanks "126135351-,126137298^"; structure "1-,2-"; splice_chain "126137298-,126137301-";
chr3	juncbase	jcn_only_AA	126135351	126135615	.	+	.	gene_id "jcn_only_AA.1314"; transcript_id "jcn_only_AA.1314"; gene_name "CUFF.538"; flanks "126135351-,126135615^"; structure "1-,2-"; splice_chain "126135615-,126137301-";
chr3	juncbase	jcn_only_AD	156266694	156262228	.	-	.	gene_id "jcn_only_AD.1663"; transcript_id "jcn_only_AD.1663"; gene_name "CUFF.466,CUFF.561"; flanks "156266694-,156262228^"; structure "1^,2^"; splice_chain "156266694^,156266594^";
chr3	juncbase	jcn_only_AD	156266655	156262228	.	-	.	gene_id "jcn_only_AD.1664"; transcript_id "jcn_only_AD.1664"; gene_name "CUFF.466,CUFF.561"; flanks "156266655-,156262228^"; structure "1^,2^"; splice_chain "156266655^,156266594^";
chr3	juncbase	alternative_donor	19989013	19992298	.	+	.	gene_id "alternative_donor.1401"; transcript_id "alternative_donor.1401"; gene_name "CUFF.432"; flanks "19989013-,19992298^"; structure "1^,2^"; splice_chain "19989013^,19989355^";
chr3	juncbase	cassette	49463685	49462871	.	-	.	gene_id "cassette.790"; transcript_id "cassette.790"; gene_name "CUFF.468"; flanks "49463685-,49462871^"; structure "0,1-2^"; splice_chain ",49463429-49463316^";
chr3	juncbase	alternative_donor	49362135	49354911	.	-	.	gene_id "alternative_donor.1402"; transcript_id "alternative_donor.1402"; gene_name ""; flanks "49362135-,49354911^"; structure "1^,2^"; splice_chain "49362135^,49355742^";
chr3	juncbase	alternative_acceptor	33454319	33458250	.	-	.	gene_id "alternative_acceptor.999"; transcript_id "alternative_acceptor.999"; gene_name "CUFF.452"; flanks "33454319-,33458250^"; structure "1-,2-"; splice_chain "33457592-,33454319-";
chr3	juncbase	intron_retention	46963726	46963629	.	-	.	gene_id "intron_retention.1048"; transcript_id "intron_retention.1048"; gene_name "CUFF.461"; flanks "46963726-,46963629^"; structure "0,1^2-"; splice_chain ",46963726^46963629-";
chr3	juncbase	alternative_donor	107585499	107576049	.	-	.	gene_id "alternative_donor.1403"; transcript_id "alternative_donor.1403"; gene_name "CUFF.504,CUFF.547"; flanks "107585499-,107576049^"; structure "1^,2^"; splice_chain "107585499^,107577978^";
chr3	juncbase	alternative_donor	107586158	107576049	.	-	.	gene_id "alternative_donor.1404"; transcript_id "alternative_donor.1404"; gene_name "CUFF.504,CUFF.547"; flanks "107586158-,107576049^"; structure "1^,2^"; splice_chain "107586158^,107577978^";
chr3	juncbase	alternative_donor	107591815	107576049	.	-	.	gene_id "alternative_donor.1405"; transcript_id "alternative_donor.1405"; gene_name "CUFF.504,CUFF.547"; flanks "107591815-,107576049^"; structure "1^,2^"; splice_chain "107591815^,107577978^";
chr3	juncbase	cassette	141724283	141712427	.	-	.	gene_id "cassette.791"; transcript_id "cassette.791"; gene_name "CUFF.554"; flanks "141724283-,141712427^"; structure "0,1-2^"; splice_chain ",141713983-141713862^";
chr3	juncbase	cassette	141747421	141697524	.	-	.	gene_id "cassette.792"; transcript_id "cassette.792"; gene_name "CUFF.554"; flanks "141747421-,141697524^"; structure "0,1-2^"; splice_chain ",141713983-141713862^";
chr3	juncbase	cassette	141724283	141697524	.	-	.	gene_id "cassette.793"; transcript_id "cassette.793"; gene_name "CUFF.554"; flanks "141724283-,141697524^"; structure "0,1-2^"; splice_chain ",141713983-141713862^";
chr3	juncbase	jcn_only_AD	119188105	119188667	.	+	.	gene_id "jcn_only_AD.1665"; transcript_id "jcn_only_AD.1665"; gene_name "CUFF.513"; flanks "119188105-,119188667^"; structure "1^,2^"; splice_chain "119187953^,119188105^";
chr3	juncbase	jcn_only_AD	119187853	119188667	.	+	.	gene_id "jcn_only_AD.1666"; transcript_id "jcn_only_AD.1666"; gene_name "CUFF.513"; flanks "119187853-,119188667^"; structure "1^,2^"; splice_chain "119187853^,119187953^";
chr3	juncbase	cassette	120394639	120389379	.	-	.	gene_id "cassette.794"; transcript_id "cassette.794"; gene_name "CUFF.522"; flanks "120394639-,120389379^"; structure "0,1-2^"; splice_chain ",120393836-120393748^";
chr3	juncbase	jcn_only_AA	107559251	107560952	.	-	.	gene_id "jcn_only_AA.1315"; transcript_id "jcn_only_AA.1315"; gene_name "CUFF.504"; flanks "107559251-,107560952^"; structure "1-,2-"; splice_chain "107560866-,107559251-";
chr3	juncbase	alternative_acceptor	19992553	20017135	.	+	.	gene_id "alternative_acceptor.1000"; transcript_id "alternative_acceptor.1000"; gene_name "CUFF.432"; flanks "19992553-,20017135^"; structure "1-,2-"; splice_chain "20017093-,20017135-";
chr3	juncbase	alternative_acceptor	19992553	20017079	.	+	.	gene_id "alternative_acceptor.1001"; transcript_id "alternative_acceptor.1001"; gene_name "CUFF.432"; flanks "19992553-,20017079^"; structure "1-,2-"; splice_chain "20017079-,20017093-";
chr3	juncbase	alternative_acceptor	19992553	20012040	.	+	.	gene_id "alternative_acceptor.1002"; transcript_id "alternative_acceptor.1002"; gene_name "CUFF.432"; flanks "19992553-,20012040^"; structure "1-,2-"; splice_chain "20012040-,20017093-";
chr3	juncbase	jcn_only_AD	119187953	119188667	.	+	.	gene_id "jcn_only_AD.1667"; transcript_id "jcn_only_AD.1667"; gene_name "CUFF.513"; flanks "119187953-,119188667^"; structure "1^,2^"; splice_chain "119187953^,119188105^";
chr3	juncbase	jcn_only_AD	119187853	119188667	.	+	.	gene_id "jcn_only_AD.1668"; transcript_id "jcn_only_AD.1668"; gene_name "CUFF.513"; flanks "119187853-,119188667^"; structure "1^,2^"; splice_chain "119187853^,119188105^";
chr3	juncbase	alternative_acceptor	57569759	57570111	.	-	.	gene_id "alternative_acceptor.1003"; transcript_id "alternative_acceptor.1003"; gene_name "CUFF.477"; flanks "57569759-,57570111^"; structure "1-,2-"; splice_chain "57569787-,57569759-";
chr3	juncbase	alternative_acceptor	57569734	57570111	.	-	.	gene_id "alternative_acceptor.1004"; transcript_id "alternative_acceptor.1004"; gene_name "CUFF.477"; flanks "57569734-,57570111^"; structure "1-,2-"; splice_chain "57569787-,57569734-";
chr3	juncbase	jcn_only_AD	125033781	125032500	.	-	.	gene_id "jcn_only_AD.1669"; transcript_id "jcn_only_AD.1669"; gene_name ""; flanks "125033781-,125032500^"; structure "1^,2^"; splice_chain "125042153^,125033781^";
chr3	juncbase	jcn_only_AD	125042232	125032500	.	-	.	gene_id "jcn_only_AD.1670"; transcript_id "jcn_only_AD.1670"; gene_name ""; flanks "125042232-,125032500^"; structure "1^,2^"; splice_chain "125042232^,125042153^";
chr3	juncbase	jcn_only_AA	49463855	49466541	.	-	.	gene_id "jcn_only_AA.1316"; transcript_id "jcn_only_AA.1316"; gene_name "CUFF.468"; flanks "49463855-,49466541^"; structure "1-,2-"; splice_chain "49463861-,49463855-";
chr3	juncbase	intron_retention	46966946	46965158	.	-	.	gene_id "intron_retention.1049"; transcript_id "intron_retention.1049"; gene_name "CUFF.461"; flanks "46966946-,46965158^"; structure "0,1^2-"; splice_chain ",46966946^46965158-";
chr3	juncbase	cassette	28283303	28357824	.	+	.	gene_id "cassette.795"; transcript_id "cassette.795"; gene_name "CUFF.442"; flanks "28283303-,28357824^"; structure "0,1-2^"; splice_chain ",28304782-28304871^";
chr3	juncbase	jcn_only_AA	133910818	133913926	.	-	.	gene_id "jcn_only_AA.1317"; transcript_id "jcn_only_AA.1317"; gene_name "CUFF.547"; flanks "133910818-,133913926^"; structure "1-,2-"; splice_chain "133910827-,133910818-";
chr3	juncbase	jcn_only_AA	107591327	107591815	.	-	.	gene_id "jcn_only_AA.1318"; transcript_id "jcn_only_AA.1318"; gene_name "CUFF.504"; flanks "107591327-,107591815^"; structure "1-,2-"; splice_chain "107591327-,107586424-";
chr3	juncbase	jcn_only_AA	107586272	107591815	.	-	.	gene_id "jcn_only_AA.1319"; transcript_id "jcn_only_AA.1319"; gene_name "CUFF.504"; flanks "107586272-,107591815^"; structure "1-,2-"; splice_chain "107586424-,107586272-";
chr3	juncbase	jcn_only_AA	107576049	107591815	.	-	.	gene_id "jcn_only_AA.1320"; transcript_id "jcn_only_AA.1320"; gene_name "CUFF.504"; flanks "107576049-,107591815^"; structure "1-,2-"; splice_chain "107586424-,107576049-";
chr3	juncbase	jcn_only_AA	8775676	8819163	.	+	.	gene_id "jcn_only_AA.1321"; transcript_id "jcn_only_AA.1321"; gene_name ""; flanks "8775676-,8819163^"; structure "1-,2-"; splice_chain "8787212-,8819163-";
chr3	juncbase	intron_retention	49462800	49462579	.	-	.	gene_id "intron_retention.1050"; transcript_id "intron_retention.1050"; gene_name ""; flanks "49462800-,49462579^"; structure "0,1^2-"; splice_chain ",49462800^49462579-";
chr3	juncbase	jcn_only_AA	107585600	107586158	.	-	.	gene_id "jcn_only_AA.1322"; transcript_id "jcn_only_AA.1322"; gene_name ""; flanks "107585600-,107586158^"; structure "1-,2-"; splice_chain "107585600-,107576049-";
chr3	juncbase	jcn_only_AA	107578108	107586158	.	-	.	gene_id "jcn_only_AA.1323"; transcript_id "jcn_only_AA.1323"; gene_name ""; flanks "107578108-,107586158^"; structure "1-,2-"; splice_chain "107578108-,107576049-";
chr3	juncbase	alternative_donor	122786053	122808015	.	+	.	gene_id "alternative_donor.1406"; transcript_id "alternative_donor.1406"; gene_name "CUFF.524"; flanks "122786053-,122808015^"; structure "1^,2^"; splice_chain "122786053^,122786422^";
chr3	juncbase	alternative_acceptor	107591327	107591815	.	-	.	gene_id "alternative_acceptor.1005"; transcript_id "alternative_acceptor.1005"; gene_name "CUFF.504"; flanks "107591327-,107591815^"; structure "1-,2-"; splice_chain "107591327-,107576049-";
chr3	juncbase	alternative_acceptor	107586272	107591815	.	-	.	gene_id "alternative_acceptor.1006"; transcript_id "alternative_acceptor.1006"; gene_name "CUFF.504"; flanks "107586272-,107591815^"; structure "1-,2-"; splice_chain "107586272-,107576049-";
chr3	juncbase	alternative_acceptor	107586424	107591815	.	-	.	gene_id "alternative_acceptor.1007"; transcript_id "alternative_acceptor.1007"; gene_name "CUFF.504"; flanks "107586424-,107591815^"; structure "1-,2-"; splice_chain "107586424-,107576049-";
chr3	juncbase	jcn_only_AD	107596749	107586424	.	-	.	gene_id "jcn_only_AD.1671"; transcript_id "jcn_only_AD.1671"; gene_name ""; flanks "107596749-,107586424^"; structure "1^,2^"; splice_chain "107596749^,107591815^";
chr3	juncbase	jcn_only_AD	107591173	107586424	.	-	.	gene_id "jcn_only_AD.1672"; transcript_id "jcn_only_AD.1672"; gene_name ""; flanks "107591173-,107586424^"; structure "1^,2^"; splice_chain "107591815^,107591173^";
chr3	juncbase	jcn_only_AA	127299006	127309253	.	-	.	gene_id "jcn_only_AA.1324"; transcript_id "jcn_only_AA.1324"; gene_name "CUFF.542"; flanks "127299006-,127309253^"; structure "1-,2-"; splice_chain "127307003-,127299006-";
chr3	juncbase	jcn_only_AA	49343321	49365119	.	-	.	gene_id "jcn_only_AA.1325"; transcript_id "jcn_only_AA.1325"; gene_name "CUFF.466"; flanks "49343321-,49365119^"; structure "1-,2-"; splice_chain "49363278-,49343321-";
chr3	juncbase	intron_retention	28357914	28361000	.	+	.	gene_id "intron_retention.1051"; transcript_id "intron_retention.1051"; gene_name ""; flanks "28357914-,28361000^"; structure "0,1^2-"; splice_chain ",28357914^28361000-";
chr3	juncbase	jcn_only_AA	19992553	20017093	.	+	.	gene_id "jcn_only_AA.1326"; transcript_id "jcn_only_AA.1326"; gene_name "CUFF.432"; flanks "19992553-,20017093^"; structure "1-,2-"; splice_chain "20017079-,20017093-";
chr3	juncbase	jcn_only_AA	19992553	20017135	.	+	.	gene_id "jcn_only_AA.1327"; transcript_id "jcn_only_AA.1327"; gene_name "CUFF.432"; flanks "19992553-,20017135^"; structure "1-,2-"; splice_chain "20017079-,20017135-";
chr3	juncbase	jcn_only_AA	19992553	20012040	.	+	.	gene_id "jcn_only_AA.1328"; transcript_id "jcn_only_AA.1328"; gene_name "CUFF.432"; flanks "19992553-,20012040^"; structure "1-,2-"; splice_chain "20012040-,20017079-";
chr3	juncbase	intron_retention	33438537	33437772	.	-	.	gene_id "intron_retention.1052"; transcript_id "intron_retention.1052"; gene_name "CUFF.452"; flanks "33438537-,33437772^"; structure "0,1^2-"; splice_chain ",33438537^33437772-";
chr3	juncbase	jcn_only_AA	133407208	133418749	.	+	.	gene_id "jcn_only_AA.1329"; transcript_id "jcn_only_AA.1329"; gene_name "CUFF.546"; flanks "133407208-,133418749^"; structure "1-,2-"; splice_chain "133418749-,133419726-";
chr3	juncbase	jcn_only_AA	133407208	133410567	.	+	.	gene_id "jcn_only_AA.1330"; transcript_id "jcn_only_AA.1330"; gene_name "CUFF.546"; flanks "133407208-,133410567^"; structure "1-,2-"; splice_chain "133410567-,133419726-";
chr3	juncbase	alternative_acceptor	107573541	107573977	.	-	.	gene_id "alternative_acceptor.1008"; transcript_id "alternative_acceptor.1008"; gene_name "CUFF.504"; flanks "107573541-,107573977^"; structure "1-,2-"; splice_chain "107573541-,107572901-";
chr3	juncbase	alternative_acceptor	107572806	107573977	.	-	.	gene_id "alternative_acceptor.1009"; transcript_id "alternative_acceptor.1009"; gene_name "CUFF.504"; flanks "107572806-,107573977^"; structure "1-,2-"; splice_chain "107572901-,107572806-";
chr3	juncbase	alternative_donor	165503933	165491294	.	-	.	gene_id "alternative_donor.1407"; transcript_id "alternative_donor.1407"; gene_name "CUFF.441,CUFF.562"; flanks "165503933-,165491294^"; structure "1^,2^"; splice_chain "165503933^,165495505^";
chr3	juncbase	alternative_acceptor	122843190	122864369	.	+	.	gene_id "alternative_acceptor.1010"; transcript_id "alternative_acceptor.1010"; gene_name "CUFF.524"; flanks "122843190-,122864369^"; structure "1-,2-"; splice_chain "122849327-,122864369-";
chr3	juncbase	jcn_only_AA	126135351	126137298	.	+	.	gene_id "jcn_only_AA.1331"; transcript_id "jcn_only_AA.1331"; gene_name "CUFF.538"; flanks "126135351-,126137298^"; structure "1-,2-"; splice_chain "126135615-,126137298-";
chr3	juncbase	jcn_only_AA	126135351	126137301	.	+	.	gene_id "jcn_only_AA.1332"; transcript_id "jcn_only_AA.1332"; gene_name "CUFF.538"; flanks "126135351-,126137301^"; structure "1-,2-"; splice_chain "126135615-,126137301-";
chr3	juncbase	jcn_only_AD	107594977	107591873	.	-	.	gene_id "jcn_only_AD.1673"; transcript_id "jcn_only_AD.1673"; gene_name ""; flanks "107594977-,107591873^"; structure "1^,2^"; splice_chain "107596749^,107594977^";
chr3	juncbase	jcn_only_AD	107594306	107591873	.	-	.	gene_id "jcn_only_AD.1674"; transcript_id "jcn_only_AD.1674"; gene_name ""; flanks "107594306-,107591873^"; structure "1^,2^"; splice_chain "107596749^,107594306^";
chr3	juncbase	jcn_only_AA	133894883	133901846	.	-	.	gene_id "jcn_only_AA.1333"; transcript_id "jcn_only_AA.1333"; gene_name "CUFF.547"; flanks "133894883-,133901846^"; structure "1-,2-"; splice_chain "133896917-,133894883-";
chr3	juncbase	intron_retention	125745178	125741775	.	-	.	gene_id "intron_retention.1053"; transcript_id "intron_retention.1053"; gene_name "CUFF.535"; flanks "125745178-,125741775^"; structure "0,1^2-"; splice_chain ",125745178^125741775-";
chr3	juncbase	alternative_donor	49377917	49373029	.	-	.	gene_id "alternative_donor.1408"; transcript_id "alternative_donor.1408"; gene_name "CUFF.561"; flanks "49377917-,49373029^"; structure "1^,2^"; splice_chain "49377917^,49377357^";
chr3	juncbase	cassette	125093946	125042288	.	-	.	gene_id "cassette.796"; transcript_id "cassette.796"; gene_name "CUFF.528"; flanks "125093946-,125042288^"; structure "0,1-2^"; splice_chain ",125050082-125050002^";
chr3	juncbase	intron_retention	13976987	13977418	.	+	.	gene_id "intron_retention.1054"; transcript_id "intron_retention.1054"; gene_name "CUFF.429"; flanks "13976987-,13977418^"; structure "0,1^2-"; splice_chain ",13976987^13977418-";
chr3	juncbase	jcn_only_AA	127299006	127309726	.	-	.	gene_id "jcn_only_AA.1334"; transcript_id "jcn_only_AA.1334"; gene_name ""; flanks "127299006-,127309726^"; structure "1-,2-"; splice_chain "127309435-,127299006-";
chr3	juncbase	jcn_only_AA	107586424	107596749	.	-	.	gene_id "jcn_only_AA.1335"; transcript_id "jcn_only_AA.1335"; gene_name ""; flanks "107586424-,107596749^"; structure "1-,2-"; splice_chain "107591873-,107586424-";
chr3	juncbase	jcn_only_AA	107595033	107596749	.	-	.	gene_id "jcn_only_AA.1336"; transcript_id "jcn_only_AA.1336"; gene_name ""; flanks "107595033-,107596749^"; structure "1-,2-"; splice_chain "107595033-,107591873-";
chr3	juncbase	jcn_only_AA	107596344	107596749	.	-	.	gene_id "jcn_only_AA.1337"; transcript_id "jcn_only_AA.1337"; gene_name ""; flanks "107596344-,107596749^"; structure "1-,2-"; splice_chain "107596344-,107591873-";
chr3	juncbase	jcn_only_AD	107573977	107572901	.	-	.	gene_id "jcn_only_AD.1675"; transcript_id "jcn_only_AD.1675"; gene_name "CUFF.504"; flanks "107573977-,107572901^"; structure "1^,2^"; splice_chain "107573977^,107573501^";
chr3	juncbase	jcn_only_AD	73610602	73453546	.	-	.	gene_id "jcn_only_AD.1676"; transcript_id "jcn_only_AD.1676"; gene_name ""; flanks "73610602-,73453546^"; structure "1^,2^"; splice_chain "73610602^,73482790^";
chr3	juncbase	jcn_only_AD	73651505	73453546	.	-	.	gene_id "jcn_only_AD.1677"; transcript_id "jcn_only_AD.1677"; gene_name ""; flanks "73651505-,73453546^"; structure "1^,2^"; splice_chain "73651505^,73482790^";
chr3	juncbase	jcn_only_AD	73523606	73453546	.	-	.	gene_id "jcn_only_AD.1678"; transcript_id "jcn_only_AD.1678"; gene_name ""; flanks "73523606-,73453546^"; structure "1^,2^"; splice_chain "73523606^,73482790^";
chr3	juncbase	jcn_only_AD	73605851	73453546	.	-	.	gene_id "jcn_only_AD.1679"; transcript_id "jcn_only_AD.1679"; gene_name ""; flanks "73605851-,73453546^"; structure "1^,2^"; splice_chain "73605851^,73482790^";
chr3	juncbase	jcn_only_AD	73618302	73453546	.	-	.	gene_id "jcn_only_AD.1680"; transcript_id "jcn_only_AD.1680"; gene_name ""; flanks "73618302-,73453546^"; structure "1^,2^"; splice_chain "73618302^,73482790^";
chr3	juncbase	alternative_acceptor	126135351	126137298	.	+	.	gene_id "alternative_acceptor.1011"; transcript_id "alternative_acceptor.1011"; gene_name "CUFF.538"; flanks "126135351-,126137298^"; structure "1-,2-"; splice_chain "126137298-,126137301-";
chr3	juncbase	alternative_acceptor	126135351	126135615	.	+	.	gene_id "alternative_acceptor.1012"; transcript_id "alternative_acceptor.1012"; gene_name "CUFF.538"; flanks "126135351-,126135615^"; structure "1-,2-"; splice_chain "126135615-,126137301-";
chr3	juncbase	jcn_only_AD	125745236	125741775	.	-	.	gene_id "jcn_only_AD.1681"; transcript_id "jcn_only_AD.1681"; gene_name "CUFF.535"; flanks "125745236-,125741775^"; structure "1^,2^"; splice_chain "125745236^,125745178^";
chr3	juncbase	alternative_acceptor	126135351	126137301	.	+	.	gene_id "alternative_acceptor.1013"; transcript_id "alternative_acceptor.1013"; gene_name ""; flanks "126135351-,126137301^"; structure "1-,2-"; splice_chain "126137298-,126137301-";
chr3	juncbase	alternative_acceptor	126135351	126135615	.	+	.	gene_id "alternative_acceptor.1014"; transcript_id "alternative_acceptor.1014"; gene_name ""; flanks "126135351-,126135615^"; structure "1-,2-"; splice_chain "126135615-,126137298-";
chr3	juncbase	jcn_only_AA	57569759	57570111	.	-	.	gene_id "jcn_only_AA.1338"; transcript_id "jcn_only_AA.1338"; gene_name "CUFF.477"; flanks "57569759-,57570111^"; structure "1-,2-"; splice_chain "57569787-,57569759-";
chr3	juncbase	jcn_only_AA	57569734	57570111	.	-	.	gene_id "jcn_only_AA.1339"; transcript_id "jcn_only_AA.1339"; gene_name "CUFF.477"; flanks "57569734-,57570111^"; structure "1-,2-"; splice_chain "57569787-,57569734-";
chr3	juncbase	alternative_donor	156266694	156262228	.	-	.	gene_id "alternative_donor.1409"; transcript_id "alternative_donor.1409"; gene_name "CUFF.466,CUFF.561"; flanks "156266694-,156262228^"; structure "1^,2^"; splice_chain "156266694^,156266594^";
chr3	juncbase	alternative_donor	156266655	156262228	.	-	.	gene_id "alternative_donor.1410"; transcript_id "alternative_donor.1410"; gene_name "CUFF.466,CUFF.561"; flanks "156266655-,156262228^"; structure "1^,2^"; splice_chain "156266655^,156266594^";
chr3	juncbase	jcn_only_AD	141868025	141820683	.	-	.	gene_id "jcn_only_AD.1682"; transcript_id "jcn_only_AD.1682"; gene_name "CUFF.504,CUFF.554"; flanks "141868025-,141820683^"; structure "1^,2^"; splice_chain "141868025^,141844991^";
chr3	juncbase	jcn_only_AA	120394710	120400944	.	-	.	gene_id "jcn_only_AA.1340"; transcript_id "jcn_only_AA.1340"; gene_name "CUFF.522"; flanks "120394710-,120400944^"; structure "1-,2-"; splice_chain "120396876-,120394710-";
chr3	juncbase	jcn_only_AA	120396838	120400944	.	-	.	gene_id "jcn_only_AA.1341"; transcript_id "jcn_only_AA.1341"; gene_name "CUFF.522"; flanks "120396838-,120400944^"; structure "1-,2-"; splice_chain "120396876-,120396838-";
chr3	juncbase	cassette	119196295	119198755	.	+	.	gene_id "cassette.797"; transcript_id "cassette.797"; gene_name "CUFF.513"; flanks "119196295-,119198755^"; structure "0,1-2^"; splice_chain ",119197181-119197321^";
chr3	juncbase	jcn_only_AD	186660215	186681573	.	+	.	gene_id "jcn_only_AD.1683"; transcript_id "jcn_only_AD.1683"; gene_name "CUFF.569"; flanks "186660215-,186681573^"; structure "1^,2^"; splice_chain "186648927^,186660215^";
chr3	juncbase	jcn_only_AD	186649183	186681573	.	+	.	gene_id "jcn_only_AD.1684"; transcript_id "jcn_only_AD.1684"; gene_name "CUFF.569"; flanks "186649183-,186681573^"; structure "1^,2^"; splice_chain "186648927^,186649183^";
chr3	juncbase	jcn_only_AD	186648623	186681573	.	+	.	gene_id "jcn_only_AD.1685"; transcript_id "jcn_only_AD.1685"; gene_name "CUFF.569"; flanks "186648623-,186681573^"; structure "1^,2^"; splice_chain "186648623^,186648927^";
chr3	juncbase	jcn_only_AD	186666726	186681573	.	+	.	gene_id "jcn_only_AD.1686"; transcript_id "jcn_only_AD.1686"; gene_name "CUFF.569"; flanks "186666726-,186681573^"; structure "1^,2^"; splice_chain "186648927^,186666726^";
chr3	juncbase	jcn_only_AD	125639748	125643809	.	+	.	gene_id "jcn_only_AD.1687"; transcript_id "jcn_only_AD.1687"; gene_name "CUFF.534"; flanks "125639748-,125643809^"; structure "1^,2^"; splice_chain "125639748^,125642983^";
chr3	juncbase	jcn_only_AA	33592887	33600799	.	-	.	gene_id "jcn_only_AA.1342"; transcript_id "jcn_only_AA.1342"; gene_name "CUFF.450"; flanks "33592887-,33600799^"; structure "1-,2-"; splice_chain "33600667-,33592887-";
chr3	juncbase	jcn_only_AA	49349087	49362135	.	-	.	gene_id "jcn_only_AA.1343"; transcript_id "jcn_only_AA.1343"; gene_name "CUFF.466"; flanks "49349087-,49362135^"; structure "1-,2-"; splice_chain "49354911-,49349087-";
chr3	juncbase	jcn_only_AA	49348170	49362135	.	-	.	gene_id "jcn_only_AA.1344"; transcript_id "jcn_only_AA.1344"; gene_name "CUFF.466"; flanks "49348170-,49362135^"; structure "1-,2-"; splice_chain "49354911-,49348170-";
chr3	juncbase	jcn_only_AA	49350046	49362135	.	-	.	gene_id "jcn_only_AA.1345"; transcript_id "jcn_only_AA.1345"; gene_name "CUFF.466"; flanks "49350046-,49362135^"; structure "1-,2-"; splice_chain "49354911-,49350046-";
chr3	juncbase	intron_retention	28358350	28361000	.	+	.	gene_id "intron_retention.1055"; transcript_id "intron_retention.1055"; gene_name ""; flanks "28358350-,28361000^"; structure "0,1^2-"; splice_chain ",28358350^28361000-";
chr3	juncbase	alternative_donor	27332753	27329234	.	-	.	gene_id "alternative_donor.1411"; transcript_id "alternative_donor.1411"; gene_name "CUFF.535"; flanks "27332753-,27329234^"; structure "1^,2^"; splice_chain "27332753^,27332108^";
chr3	juncbase	jcn_only_AA	186790735	186791947	.	+	.	gene_id "jcn_only_AA.1346"; transcript_id "jcn_only_AA.1346"; gene_name "CUFF.569"; flanks "186790735-,186791947^"; structure "1-,2-"; splice_chain "186791193-,186791947-";
chr3	juncbase	intron_retention	51748137	51749078	.	+	.	gene_id "intron_retention.1056"; transcript_id "intron_retention.1056"; gene_name "CUFF.470"; flanks "51748137-,51749078^"; structure "0,1^2-"; splice_chain ",51748137^51749078-";
chr3	juncbase	alternative_donor	27236028	27233733	.	-	.	gene_id "alternative_donor.1412"; transcript_id "alternative_donor.1412"; gene_name ""; flanks "27236028-,27233733^"; structure "1^,2^"; splice_chain "27243001^,27236028^";
chr3	juncbase	alternative_donor	27235552	27233733	.	-	.	gene_id "alternative_donor.1413"; transcript_id "alternative_donor.1413"; gene_name ""; flanks "27235552-,27233733^"; structure "1^,2^"; splice_chain "27243001^,27235552^";
chr3	juncbase	intron_retention	38519783	38519866	.	+	.	gene_id "intron_retention.1057"; transcript_id "intron_retention.1057"; gene_name "CUFF.457"; flanks "38519783-,38519866^"; structure "0,1^2-"; splice_chain ",38519783^38519866-";
chr3	juncbase	jcn_only_AA	33673863	33686249	.	-	.	gene_id "jcn_only_AA.1347"; transcript_id "jcn_only_AA.1347"; gene_name "CUFF.450"; flanks "33673863-,33686249^"; structure "1-,2-"; splice_chain "33673866-,33673863-";
chr3	juncbase	jcn_only_AA	141693033	141697362	.	-	.	gene_id "jcn_only_AA.1348"; transcript_id "jcn_only_AA.1348"; gene_name "CUFF.554"; flanks "141693033-,141697362^"; structure "1-,2-"; splice_chain "141693036-,141693033-";
chr3	juncbase	intron_retention	126133022	126135159	.	+	.	gene_id "intron_retention.1058"; transcript_id "intron_retention.1058"; gene_name "CUFF.538"; flanks "126133022-,126135159^"; structure "0,1^2-"; splice_chain ",126133022^126135159-";
chr3	juncbase	jcn_only_AD	71778225	71777774	.	-	.	gene_id "jcn_only_AD.1688"; transcript_id "jcn_only_AD.1688"; gene_name "CUFF.483"; flanks "71778225-,71777774^"; structure "1^,2^"; splice_chain "71803366^,71778225^";
chr3	juncbase	jcn_only_AD	71803795	71777774	.	-	.	gene_id "jcn_only_AD.1689"; transcript_id "jcn_only_AD.1689"; gene_name "CUFF.483"; flanks "71803795-,71777774^"; structure "1^,2^"; splice_chain "71803795^,71803366^";
chr3	juncbase	jcn_only_AD	71802614	71777774	.	-	.	gene_id "jcn_only_AD.1690"; transcript_id "jcn_only_AD.1690"; gene_name "CUFF.483"; flanks "71802614-,71777774^"; structure "1^,2^"; splice_chain "71803366^,71802614^";
chr3	juncbase	jcn_only_AD	73482790	73453546	.	-	.	gene_id "jcn_only_AD.1691"; transcript_id "jcn_only_AD.1691"; gene_name "CUFF.487"; flanks "73482790-,73453546^"; structure "1^,2^"; splice_chain "73618302^,73482790^";
chr3	juncbase	jcn_only_AD	73610602	73453546	.	-	.	gene_id "jcn_only_AD.1692"; transcript_id "jcn_only_AD.1692"; gene_name "CUFF.487"; flanks "73610602-,73453546^"; structure "1^,2^"; splice_chain "73618302^,73610602^";
chr3	juncbase	jcn_only_AD	73651505	73453546	.	-	.	gene_id "jcn_only_AD.1693"; transcript_id "jcn_only_AD.1693"; gene_name "CUFF.487"; flanks "73651505-,73453546^"; structure "1^,2^"; splice_chain "73651505^,73618302^";
chr3	juncbase	jcn_only_AD	73523606	73453546	.	-	.	gene_id "jcn_only_AD.1694"; transcript_id "jcn_only_AD.1694"; gene_name "CUFF.487"; flanks "73523606-,73453546^"; structure "1^,2^"; splice_chain "73618302^,73523606^";
chr3	juncbase	jcn_only_AD	73605851	73453546	.	-	.	gene_id "jcn_only_AD.1695"; transcript_id "jcn_only_AD.1695"; gene_name "CUFF.487"; flanks "73605851-,73453546^"; structure "1^,2^"; splice_chain "73618302^,73605851^";
chr3	juncbase	intron_retention	28283303	28304782	.	+	.	gene_id "intron_retention.1059"; transcript_id "intron_retention.1059"; gene_name ""; flanks "28283303-,28304782^"; structure "0,1^2-"; splice_chain ",28283303^28304782-";
chr3	juncbase	jcn_only_AD	132764864	132948114	.	+	.	gene_id "jcn_only_AD.1696"; transcript_id "jcn_only_AD.1696"; gene_name ""; flanks "132764864-,132948114^"; structure "1^,2^"; splice_chain "132764864^,132911671^";
chr3	juncbase	jcn_only_AA	49354911	49362135	.	-	.	gene_id "jcn_only_AA.1349"; transcript_id "jcn_only_AA.1349"; gene_name "CUFF.466"; flanks "49354911-,49362135^"; structure "1-,2-"; splice_chain "49354911-,49348170-";
chr3	juncbase	jcn_only_AA	49349087	49362135	.	-	.	gene_id "jcn_only_AA.1350"; transcript_id "jcn_only_AA.1350"; gene_name "CUFF.466"; flanks "49349087-,49362135^"; structure "1-,2-"; splice_chain "49349087-,49348170-";
chr3	juncbase	jcn_only_AA	49350046	49362135	.	-	.	gene_id "jcn_only_AA.1351"; transcript_id "jcn_only_AA.1351"; gene_name "CUFF.466"; flanks "49350046-,49362135^"; structure "1-,2-"; splice_chain "49350046-,49348170-";
chr3	juncbase	intron_retention	125725560	125725471	.	-	.	gene_id "intron_retention.1060"; transcript_id "intron_retention.1060"; gene_name ""; flanks "125725560-,125725471^"; structure "0,1^2-"; splice_chain ",125725560^125725471-";
chr3	juncbase	alternative_donor	19992553	20017093	.	+	.	gene_id "alternative_donor.1414"; transcript_id "alternative_donor.1414"; gene_name "CUFF.432"; flanks "19992553-,20017093^"; structure "1^,2^"; splice_chain "19992553^,20012209^";
chr3	juncbase	cassette	57570111	57563114	.	-	.	gene_id "cassette.798"; transcript_id "cassette.798"; gene_name "CUFF.477"; flanks "57570111-,57563114^"; structure "0,1-2^"; splice_chain ",57569734-57569625^";
chr3	juncbase	cassette	57582801	57563114	.	-	.	gene_id "cassette.799"; transcript_id "cassette.799"; gene_name "CUFF.477"; flanks "57582801-,57563114^"; structure "0,1-2^"; splice_chain ",57569734-57569625^";
chr3	juncbase	jcn_only_AA	73453546	73651505	.	-	.	gene_id "jcn_only_AA.1352"; transcript_id "jcn_only_AA.1352"; gene_name ""; flanks "73453546-,73651505^"; structure "1-,2-"; splice_chain "73457411-,73453546-";
chr3	juncbase	jcn_only_AA	133794057	133894453	.	-	.	gene_id "jcn_only_AA.1353"; transcript_id "jcn_only_AA.1353"; gene_name "CUFF.547"; flanks "133794057-,133894453^"; structure "1-,2-"; splice_chain "133878217-,133794057-";
chr3	juncbase	alternative_acceptor	33451079	33453073	.	-	.	gene_id "alternative_acceptor.1015"; transcript_id "alternative_acceptor.1015"; gene_name "CUFF.452"; flanks "33451079-,33453073^"; structure "1-,2-"; splice_chain "33451093-,33451079-";
chr3	juncbase	alternative_donor	107577978	107576049	.	-	.	gene_id "alternative_donor.1415"; transcript_id "alternative_donor.1415"; gene_name "CUFF.504"; flanks "107577978-,107576049^"; structure "1^,2^"; splice_chain "107586158^,107577978^";
chr3	juncbase	alternative_donor	107585499	107576049	.	-	.	gene_id "alternative_donor.1416"; transcript_id "alternative_donor.1416"; gene_name "CUFF.504"; flanks "107585499-,107576049^"; structure "1^,2^"; splice_chain "107586158^,107585499^";
chr3	juncbase	alternative_donor	107591815	107576049	.	-	.	gene_id "alternative_donor.1417"; transcript_id "alternative_donor.1417"; gene_name "CUFF.504"; flanks "107591815-,107576049^"; structure "1^,2^"; splice_chain "107591815^,107586158^";
chr3	juncbase	intron_retention	19992553	20017093	.	+	.	gene_id "intron_retention.1061"; transcript_id "intron_retention.1061"; gene_name ""; flanks "19992553-,20017093^"; structure "0,1^2-"; splice_chain ",19992553^20017093-";
chr3	juncbase	cassette	141868025	141724386	.	-	.	gene_id "cassette.800"; transcript_id "cassette.800"; gene_name "CUFF.554"; flanks "141868025-,141724386^"; structure "0,1-2^"; splice_chain ",141820683-141820577^";
chr3	juncbase	jcn_only_AD	27243001	27233733	.	-	.	gene_id "jcn_only_AD.1697"; transcript_id "jcn_only_AD.1697"; gene_name "CUFF.441,CUFF.542"; flanks "27243001-,27233733^"; structure "1^,2^"; splice_chain "27243001^,27235552^";
chr3	juncbase	jcn_only_AD	27236028	27233733	.	-	.	gene_id "jcn_only_AD.1698"; transcript_id "jcn_only_AD.1698"; gene_name "CUFF.441,CUFF.542"; flanks "27236028-,27233733^"; structure "1^,2^"; splice_chain "27236028^,27235552^";
chr3	juncbase	intron_retention	28357914	28358244	.	+	.	gene_id "intron_retention.1062"; transcript_id "intron_retention.1062"; gene_name ""; flanks "28357914-,28358244^"; structure "0,1^2-"; splice_chain ",28357914^28358244-";
chr3	juncbase	intron_retention	107574160	107574076	.	-	.	gene_id "intron_retention.1063"; transcript_id "intron_retention.1063"; gene_name ""; flanks "107574160-,107574076^"; structure "0,1^2-"; splice_chain ",107574160^107574076-";
chr3	juncbase	alternative_donor	33600799	33592887	.	-	.	gene_id "alternative_donor.1418"; transcript_id "alternative_donor.1418"; gene_name "CUFF.450,CUFF.471"; flanks "33600799-,33592887^"; structure "1^,2^"; splice_chain "33600799^,33600617^";
chr3	juncbase	jcn_only_AD	33458250	33454319	.	-	.	gene_id "jcn_only_AD.1699"; transcript_id "jcn_only_AD.1699"; gene_name "CUFF.452"; flanks "33458250-,33454319^"; structure "1^,2^"; splice_chain "33458250^,33457498^";
chr3	juncbase	alternative_donor	28283303	28304782	.	+	.	gene_id "alternative_donor.1419"; transcript_id "alternative_donor.1419"; gene_name "CUFF.442"; flanks "28283303-,28304782^"; structure "1^,2^"; splice_chain "28283303^,28283392^";
chr3	juncbase	alternative_donor	28295256	28304782	.	+	.	gene_id "alternative_donor.1420"; transcript_id "alternative_donor.1420"; gene_name "CUFF.442"; flanks "28295256-,28304782^"; structure "1^,2^"; splice_chain "28283392^,28295256^";
chr3	juncbase	jcn_only_AD	107585499	107576049	.	-	.	gene_id "jcn_only_AD.1700"; transcript_id "jcn_only_AD.1700"; gene_name "CUFF.504,CUFF.547"; flanks "107585499-,107576049^"; structure "1^,2^"; splice_chain "107585499^,107577978^";
chr3	juncbase	jcn_only_AD	107586158	107576049	.	-	.	gene_id "jcn_only_AD.1701"; transcript_id "jcn_only_AD.1701"; gene_name "CUFF.504,CUFF.547"; flanks "107586158-,107576049^"; structure "1^,2^"; splice_chain "107586158^,107577978^";
chr3	juncbase	jcn_only_AD	107591815	107576049	.	-	.	gene_id "jcn_only_AD.1702"; transcript_id "jcn_only_AD.1702"; gene_name "CUFF.504,CUFF.547"; flanks "107591815-,107576049^"; structure "1^,2^"; splice_chain "107591815^,107577978^";
chr3	juncbase	jcn_only_AD	49362135	49349087	.	-	.	gene_id "jcn_only_AD.1703"; transcript_id "jcn_only_AD.1703"; gene_name "CUFF.466"; flanks "49362135-,49349087^"; structure "1^,2^"; splice_chain "49362135^,49355742^";
chr3	juncbase	jcn_only_AD	49351304	49349087	.	-	.	gene_id "jcn_only_AD.1704"; transcript_id "jcn_only_AD.1704"; gene_name "CUFF.466"; flanks "49351304-,49349087^"; structure "1^,2^"; splice_chain "49355742^,49351304^";
chr3	juncbase	jcn_only_AD	107594977	107586272	.	-	.	gene_id "jcn_only_AD.1705"; transcript_id "jcn_only_AD.1705"; gene_name "CUFF.441"; flanks "107594977-,107586272^"; structure "1^,2^"; splice_chain "107594977^,107591815^";
chr3	juncbase	jcn_only_AD	107596160	107586272	.	-	.	gene_id "jcn_only_AD.1706"; transcript_id "jcn_only_AD.1706"; gene_name "CUFF.441"; flanks "107596160-,107586272^"; structure "1^,2^"; splice_chain "107596160^,107591815^";
chr3	juncbase	alternative_donor	107594977	107586272	.	-	.	gene_id "alternative_donor.1421"; transcript_id "alternative_donor.1421"; gene_name "CUFF.441"; flanks "107594977-,107586272^"; structure "1^,2^"; splice_chain "107594977^,107591815^";
chr3	juncbase	alternative_donor	107596160	107586272	.	-	.	gene_id "alternative_donor.1422"; transcript_id "alternative_donor.1422"; gene_name "CUFF.441"; flanks "107596160-,107586272^"; structure "1^,2^"; splice_chain "107596160^,107591815^";
chr3	juncbase	jcn_only_AA	33451079	33453073	.	-	.	gene_id "jcn_only_AA.1354"; transcript_id "jcn_only_AA.1354"; gene_name "CUFF.452"; flanks "33451079-,33453073^"; structure "1-,2-"; splice_chain "33451093-,33451079-";
chr3	juncbase	cassette	125635562	125639668	.	+	.	gene_id "cassette.801"; transcript_id "cassette.801"; gene_name "CUFF.534"; flanks "125635562-,125639668^"; structure "0,1-2^"; splice_chain ",125637707-125637769^";
chr3	juncbase	alternative_donor	156271444	156266792	.	-	.	gene_id "alternative_donor.1423"; transcript_id "alternative_donor.1423"; gene_name "CUFF.561"; flanks "156271444-,156266792^"; structure "1^,2^"; splice_chain "156271444^,156269187^";
chr3	juncbase	alternative_acceptor	49463855	49466541	.	-	.	gene_id "alternative_acceptor.1016"; transcript_id "alternative_acceptor.1016"; gene_name "CUFF.468"; flanks "49463855-,49466541^"; structure "1-,2-"; splice_chain "49463861-,49463855-";
chr3	juncbase	intron_retention	46964819	46963802	.	-	.	gene_id "intron_retention.1064"; transcript_id "intron_retention.1064"; gene_name "CUFF.461"; flanks "46964819-,46963802^"; structure "0,1^2-"; splice_chain ",46964819^46963802-";
chr3	juncbase	alternative_donor	125033781	125032500	.	-	.	gene_id "alternative_donor.1424"; transcript_id "alternative_donor.1424"; gene_name ""; flanks "125033781-,125032500^"; structure "1^,2^"; splice_chain "125042153^,125033781^";
chr3	juncbase	alternative_donor	125042232	125032500	.	-	.	gene_id "alternative_donor.1425"; transcript_id "alternative_donor.1425"; gene_name ""; flanks "125042232-,125032500^"; structure "1^,2^"; splice_chain "125042232^,125042153^";
chr3	juncbase	cassette	125769741	125745322	.	-	.	gene_id "cassette.802"; transcript_id "cassette.802"; gene_name "CUFF.535"; flanks "125769741-,125745322^"; structure "0,1-2^"; splice_chain ",125752521-125752450^";
chr3	juncbase	alternative_donor	73482790	73453546	.	-	.	gene_id "alternative_donor.1426"; transcript_id "alternative_donor.1426"; gene_name "CUFF.487"; flanks "73482790-,73453546^"; structure "1^,2^"; splice_chain "73523606^,73482790^";
chr3	juncbase	alternative_donor	73610602	73453546	.	-	.	gene_id "alternative_donor.1427"; transcript_id "alternative_donor.1427"; gene_name "CUFF.487"; flanks "73610602-,73453546^"; structure "1^,2^"; splice_chain "73610602^,73523606^";
chr3	juncbase	alternative_donor	73651505	73453546	.	-	.	gene_id "alternative_donor.1428"; transcript_id "alternative_donor.1428"; gene_name "CUFF.487"; flanks "73651505-,73453546^"; structure "1^,2^"; splice_chain "73651505^,73523606^";
chr3	juncbase	alternative_donor	73605851	73453546	.	-	.	gene_id "alternative_donor.1429"; transcript_id "alternative_donor.1429"; gene_name "CUFF.487"; flanks "73605851-,73453546^"; structure "1^,2^"; splice_chain "73605851^,73523606^";
chr3	juncbase	alternative_donor	73618302	73453546	.	-	.	gene_id "alternative_donor.1430"; transcript_id "alternative_donor.1430"; gene_name "CUFF.487"; flanks "73618302-,73453546^"; structure "1^,2^"; splice_chain "73618302^,73523606^";
chr3	juncbase	alternative_acceptor	127299006	127309726	.	-	.	gene_id "alternative_acceptor.1017"; transcript_id "alternative_acceptor.1017"; gene_name ""; flanks "127299006-,127309726^"; structure "1-,2-"; splice_chain "127309435-,127299006-";
chr3	juncbase	intron_retention	49462800	49462486	.	-	.	gene_id "intron_retention.1065"; transcript_id "intron_retention.1065"; gene_name "CUFF.468"; flanks "49462800-,49462486^"; structure "0,1^2-"; splice_chain ",49462800^49462486-";
chr3	juncbase	jcn_only_AD	107594977	107586272	.	-	.	gene_id "jcn_only_AD.1707"; transcript_id "jcn_only_AD.1707"; gene_name ""; flanks "107594977-,107586272^"; structure "1^,2^"; splice_chain "107596160^,107594977^";
chr3	juncbase	jcn_only_AD	107591815	107586272	.	-	.	gene_id "jcn_only_AD.1708"; transcript_id "jcn_only_AD.1708"; gene_name ""; flanks "107591815-,107586272^"; structure "1^,2^"; splice_chain "107596160^,107591815^";
chr3	juncbase	intron_retention	49461508	49460996	.	-	.	gene_id "intron_retention.1066"; transcript_id "intron_retention.1066"; gene_name "CUFF.468"; flanks "49461508-,49460996^"; structure "0,1^2-"; splice_chain ",49461508^49460996-";
chr3	juncbase	alternative_donor	125745236	125741775	.	-	.	gene_id "alternative_donor.1431"; transcript_id "alternative_donor.1431"; gene_name "CUFF.535"; flanks "125745236-,125741775^"; structure "1^,2^"; splice_chain "125745236^,125745178^";
chr3	juncbase	jcn_only_AA	33686395	33700999	.	-	.	gene_id "jcn_only_AA.1355"; transcript_id "jcn_only_AA.1355"; gene_name ""; flanks "33686395-,33700999^"; structure "1-,2-"; splice_chain "33700501-,33686395-";
chr3	juncbase	intron_retention	119207834	119209398	.	+	.	gene_id "intron_retention.1067"; transcript_id "intron_retention.1067"; gene_name "CUFF.513"; flanks "119207834-,119209398^"; structure "0,1^2-"; splice_chain ",119207834^119209398-";
chr3	juncbase	alternative_donor	38061679	38058210	.	-	.	gene_id "alternative_donor.1432"; transcript_id "alternative_donor.1432"; gene_name "CUFF.455"; flanks "38061679-,38058210^"; structure "1^,2^"; splice_chain "38061679^,38060461^";
chr3	juncbase	jcn_only_AD	107577978	107576049	.	-	.	gene_id "jcn_only_AD.1709"; transcript_id "jcn_only_AD.1709"; gene_name "CUFF.504"; flanks "107577978-,107576049^"; structure "1^,2^"; splice_chain "107586158^,107577978^";
chr3	juncbase	jcn_only_AD	107585499	107576049	.	-	.	gene_id "jcn_only_AD.1710"; transcript_id "jcn_only_AD.1710"; gene_name "CUFF.504"; flanks "107585499-,107576049^"; structure "1^,2^"; splice_chain "107586158^,107585499^";
chr3	juncbase	jcn_only_AD	107591815	107576049	.	-	.	gene_id "jcn_only_AD.1711"; transcript_id "jcn_only_AD.1711"; gene_name "CUFF.504"; flanks "107591815-,107576049^"; structure "1^,2^"; splice_chain "107591815^,107586158^";
chr3	juncbase	jcn_only_AD	73482790	73453546	.	-	.	gene_id "jcn_only_AD.1712"; transcript_id "jcn_only_AD.1712"; gene_name "CUFF.487"; flanks "73482790-,73453546^"; structure "1^,2^"; splice_chain "73610602^,73482790^";
chr3	juncbase	jcn_only_AD	73651505	73453546	.	-	.	gene_id "jcn_only_AD.1713"; transcript_id "jcn_only_AD.1713"; gene_name "CUFF.487"; flanks "73651505-,73453546^"; structure "1^,2^"; splice_chain "73651505^,73610602^";
chr3	juncbase	jcn_only_AD	73523606	73453546	.	-	.	gene_id "jcn_only_AD.1714"; transcript_id "jcn_only_AD.1714"; gene_name "CUFF.487"; flanks "73523606-,73453546^"; structure "1^,2^"; splice_chain "73610602^,73523606^";
chr3	juncbase	jcn_only_AD	73605851	73453546	.	-	.	gene_id "jcn_only_AD.1715"; transcript_id "jcn_only_AD.1715"; gene_name "CUFF.487"; flanks "73605851-,73453546^"; structure "1^,2^"; splice_chain "73610602^,73605851^";
chr3	juncbase	jcn_only_AD	73618302	73453546	.	-	.	gene_id "jcn_only_AD.1716"; transcript_id "jcn_only_AD.1716"; gene_name "CUFF.487"; flanks "73618302-,73453546^"; structure "1^,2^"; splice_chain "73618302^,73610602^";
chr3	juncbase	alternative_acceptor	33686395	33700999	.	-	.	gene_id "alternative_acceptor.1018"; transcript_id "alternative_acceptor.1018"; gene_name ""; flanks "33686395-,33700999^"; structure "1-,2-"; splice_chain "33700501-,33686395-";
chr3	juncbase	jcn_only_AA	120371493	120389274	.	-	.	gene_id "jcn_only_AA.1356"; transcript_id "jcn_only_AA.1356"; gene_name "CUFF.522"; flanks "120371493-,120389274^"; structure "1-,2-"; splice_chain "120371498-,120371493-";
chr3	juncbase	jcn_only_AD	186649183	186681573	.	+	.	gene_id "jcn_only_AD.1717"; transcript_id "jcn_only_AD.1717"; gene_name "CUFF.569"; flanks "186649183-,186681573^"; structure "1^,2^"; splice_chain "186649183^,186660215^";
chr3	juncbase	jcn_only_AD	186648623	186681573	.	+	.	gene_id "jcn_only_AD.1718"; transcript_id "jcn_only_AD.1718"; gene_name "CUFF.569"; flanks "186648623-,186681573^"; structure "1^,2^"; splice_chain "186648623^,186660215^";
chr3	juncbase	jcn_only_AD	186648927	186681573	.	+	.	gene_id "jcn_only_AD.1719"; transcript_id "jcn_only_AD.1719"; gene_name "CUFF.569"; flanks "186648927-,186681573^"; structure "1^,2^"; splice_chain "186648927^,186660215^";
chr3	juncbase	jcn_only_AD	186666726	186681573	.	+	.	gene_id "jcn_only_AD.1720"; transcript_id "jcn_only_AD.1720"; gene_name "CUFF.569"; flanks "186666726-,186681573^"; structure "1^,2^"; splice_chain "186660215^,186666726^";
chr3	juncbase	alternative_donor	107591173	107586424	.	-	.	gene_id "alternative_donor.1433"; transcript_id "alternative_donor.1433"; gene_name ""; flanks "107591173-,107586424^"; structure "1^,2^"; splice_chain "107596749^,107591173^";
chr3	juncbase	alternative_donor	107591815	107586424	.	-	.	gene_id "alternative_donor.1434"; transcript_id "alternative_donor.1434"; gene_name ""; flanks "107591815-,107586424^"; structure "1^,2^"; splice_chain "107596749^,107591815^";
chr3	juncbase	alternative_acceptor	107586272	107591815	.	-	.	gene_id "alternative_acceptor.1019"; transcript_id "alternative_acceptor.1019"; gene_name "CUFF.504"; flanks "107586272-,107591815^"; structure "1-,2-"; splice_chain "107591327-,107586272-";
chr3	juncbase	alternative_acceptor	107576049	107591815	.	-	.	gene_id "alternative_acceptor.1020"; transcript_id "alternative_acceptor.1020"; gene_name "CUFF.504"; flanks "107576049-,107591815^"; structure "1-,2-"; splice_chain "107591327-,107576049-";
chr3	juncbase	alternative_acceptor	107586424	107591815	.	-	.	gene_id "alternative_acceptor.1021"; transcript_id "alternative_acceptor.1021"; gene_name "CUFF.504"; flanks "107586424-,107591815^"; structure "1-,2-"; splice_chain "107591327-,107586424-";
chr3	juncbase	alternative_donor	28283392	28304782	.	+	.	gene_id "alternative_donor.1435"; transcript_id "alternative_donor.1435"; gene_name "CUFF.442"; flanks "28283392-,28304782^"; structure "1^,2^"; splice_chain "28283303^,28283392^";
chr3	juncbase	alternative_donor	28295256	28304782	.	+	.	gene_id "alternative_donor.1436"; transcript_id "alternative_donor.1436"; gene_name "CUFF.442"; flanks "28295256-,28304782^"; structure "1^,2^"; splice_chain "28283303^,28295256^";
chr3	juncbase	alternative_acceptor	120394710	120400944	.	-	.	gene_id "alternative_acceptor.1022"; transcript_id "alternative_acceptor.1022"; gene_name "CUFF.522"; flanks "120394710-,120400944^"; structure "1-,2-"; splice_chain "120396876-,120394710-";
chr3	juncbase	alternative_acceptor	120396838	120400944	.	-	.	gene_id "alternative_acceptor.1023"; transcript_id "alternative_acceptor.1023"; gene_name "CUFF.522"; flanks "120396838-,120400944^"; structure "1-,2-"; splice_chain "120396876-,120396838-";
chr3	juncbase	alternative_acceptor	186790735	186791947	.	+	.	gene_id "alternative_acceptor.1024"; transcript_id "alternative_acceptor.1024"; gene_name "CUFF.569"; flanks "186790735-,186791947^"; structure "1-,2-"; splice_chain "186791193-,186791947-";
chr3	juncbase	cassette	186756661	186760442	.	+	.	gene_id "cassette.803"; transcript_id "cassette.803"; gene_name "CUFF.569"; flanks "186756661-,186760442^"; structure "0,1-2^"; splice_chain ",186759705-186759754^";
chr3	juncbase	jcn_only_AA	28357914	28360223	.	+	.	gene_id "jcn_only_AA.1357"; transcript_id "jcn_only_AA.1357"; gene_name ""; flanks "28357914-,28360223^"; structure "1-,2-"; splice_chain "28358244-,28360223-";
chr3	juncbase	jcn_only_AA	28357914	28361000	.	+	.	gene_id "jcn_only_AA.1358"; transcript_id "jcn_only_AA.1358"; gene_name ""; flanks "28357914-,28361000^"; structure "1-,2-"; splice_chain "28358244-,28361000-";
chr3	juncbase	alternative_donor	71803795	71777774	.	-	.	gene_id "alternative_donor.1437"; transcript_id "alternative_donor.1437"; gene_name "CUFF.441"; flanks "71803795-,71777774^"; structure "1^,2^"; splice_chain "71803795^,71778225^";
chr3	juncbase	alternative_donor	71802614	71777774	.	-	.	gene_id "alternative_donor.1438"; transcript_id "alternative_donor.1438"; gene_name "CUFF.441"; flanks "71802614-,71777774^"; structure "1^,2^"; splice_chain "71802614^,71778225^";
chr3	juncbase	alternative_donor	71803366	71777774	.	-	.	gene_id "alternative_donor.1439"; transcript_id "alternative_donor.1439"; gene_name "CUFF.441"; flanks "71803366-,71777774^"; structure "1^,2^"; splice_chain "71803366^,71778225^";
chr3	juncbase	intron_retention	125802772	125787089	.	-	.	gene_id "intron_retention.1068"; transcript_id "intron_retention.1068"; gene_name "CUFF.535"; flanks "125802772-,125787089^"; structure "0,1^2-"; splice_chain ",125802772^125787089-";
chr3	juncbase	intron_retention	33644444	33644081	.	-	.	gene_id "intron_retention.1069"; transcript_id "intron_retention.1069"; gene_name "CUFF.450"; flanks "33644444-,33644081^"; structure "0,1^2-"; splice_chain ",33644444^33644081-";
chr3	juncbase	intron_retention	149051300	149051186	.	-	.	gene_id "intron_retention.1070"; transcript_id "intron_retention.1070"; gene_name "CUFF.556"; flanks "149051300-,149051186^"; structure "0,1^2-"; splice_chain ",149051300^149051186-";
chr2	juncbase	cassette	175742568	175689246	.	-	.	gene_id "cassette.804"; transcript_id "cassette.804"; gene_name "CUFF.371"; flanks "175742568-,175689246^"; structure "0,1-2^"; splice_chain ",175711685-175711608^";
chr2	juncbase	alternative_donor	242610820	242611606	.	+	.	gene_id "alternative_donor.1440"; transcript_id "alternative_donor.1440"; gene_name "CUFF.422"; flanks "242610820-,242611606^"; structure "1^,2^"; splice_chain "242610820^,242610856^";
chr2	juncbase	alternative_donor	242610840	242611606	.	+	.	gene_id "alternative_donor.1441"; transcript_id "alternative_donor.1441"; gene_name "CUFF.422"; flanks "242610840-,242611606^"; structure "1^,2^"; splice_chain "242610840^,242610856^";
chr2	juncbase	alternative_donor	191334375	191334484	.	+	.	gene_id "alternative_donor.1442"; transcript_id "alternative_donor.1442"; gene_name "CUFF.384"; flanks "191334375-,191334484^"; structure "1^,2^"; splice_chain "191302287^,191334375^";
chr2	juncbase	alternative_donor	191307731	191334484	.	+	.	gene_id "alternative_donor.1443"; transcript_id "alternative_donor.1443"; gene_name "CUFF.384"; flanks "191307731-,191334484^"; structure "1^,2^"; splice_chain "191302287^,191307731^";
chr2	juncbase	intron_retention	86400773	86397964	.	-	.	gene_id "intron_retention.1071"; transcript_id "intron_retention.1071"; gene_name ""; flanks "86400773-,86397964^"; structure "0,1^2-"; splice_chain ",86400773^86397964-";
chr2	juncbase	alternative_donor	25194425	25190162	.	-	.	gene_id "alternative_donor.1444"; transcript_id "alternative_donor.1444"; gene_name "CUFF.222"; flanks "25194425-,25190162^"; structure "1^,2^"; splice_chain "25194425^,25194285^";
chr2	juncbase	alternative_donor	69901155	69870406	.	-	.	gene_id "alternative_donor.1445"; transcript_id "alternative_donor.1445"; gene_name "CUFF.294"; flanks "69901155-,69870406^"; structure "1^,2^"; splice_chain "69901155^,69870875^";
chr2	juncbase	alternative_donor	69870707	69870406	.	-	.	gene_id "alternative_donor.1446"; transcript_id "alternative_donor.1446"; gene_name "CUFF.294"; flanks "69870707-,69870406^"; structure "1^,2^"; splice_chain "69870875^,69870707^";
chr2	juncbase	alternative_donor	69870924	69870406	.	-	.	gene_id "alternative_donor.1447"; transcript_id "alternative_donor.1447"; gene_name "CUFF.294"; flanks "69870924-,69870406^"; structure "1^,2^"; splice_chain "69870924^,69870875^";
chr2	juncbase	alternative_donor	1263213	1271137	.	+	.	gene_id "alternative_donor.1448"; transcript_id "alternative_donor.1448"; gene_name "CUFF.195"; flanks "1263213-,1271137^"; structure "1^,2^"; splice_chain "1263213^,1266721^";
chr2	juncbase	alternative_acceptor	175216453	175243651	.	-	.	gene_id "alternative_acceptor.1025"; transcript_id "alternative_acceptor.1025"; gene_name "CUFF.370"; flanks "175216453-,175243651^"; structure "1-,2-"; splice_chain "175223264-,175216453-";
chr2	juncbase	alternative_acceptor	175234742	175243651	.	-	.	gene_id "alternative_acceptor.1026"; transcript_id "alternative_acceptor.1026"; gene_name "CUFF.370"; flanks "175234742-,175243651^"; structure "1-,2-"; splice_chain "175234742-,175223264-";
chr2	juncbase	alternative_donor	242577175	242590425	.	+	.	gene_id "alternative_donor.1449"; transcript_id "alternative_donor.1449"; gene_name "CUFF.422"; flanks "242577175-,242590425^"; structure "1^,2^"; splice_chain "242577175^,242577785^";
chr2	juncbase	alternative_donor	242577139	242590425	.	+	.	gene_id "alternative_donor.1450"; transcript_id "alternative_donor.1450"; gene_name "CUFF.422"; flanks "242577139-,242590425^"; structure "1^,2^"; splice_chain "242577139^,242577785^";
chr2	juncbase	jcn_only_AD	109102363	109102891	.	+	.	gene_id "jcn_only_AD.1721"; transcript_id "jcn_only_AD.1721"; gene_name "CUFF.333"; flanks "109102363-,109102891^"; structure "1^,2^"; splice_chain "109102363^,109102364^";
chr2	juncbase	jcn_only_AA	220095127	220096982	.	+	.	gene_id "jcn_only_AA.1359"; transcript_id "jcn_only_AA.1359"; gene_name ""; flanks "220095127-,220096982^"; structure "1-,2-"; splice_chain "220096650-,220096982-";
chr2	juncbase	alternative_acceptor	280149	283111	.	-	.	gene_id "alternative_acceptor.1027"; transcript_id "alternative_acceptor.1027"; gene_name "CUFF.191"; flanks "280149-,283111^"; structure "1-,2-"; splice_chain "280152-,280149-";
chr2	juncbase	jcn_only_AD	207988498	207953305	.	-	.	gene_id "jcn_only_AD.1722"; transcript_id "jcn_only_AD.1722"; gene_name "CUFF.396"; flanks "207988498-,207953305^"; structure "1^,2^"; splice_chain "207988700^,207988498^";
chr2	juncbase	jcn_only_AD	207989068	207953305	.	-	.	gene_id "jcn_only_AD.1723"; transcript_id "jcn_only_AD.1723"; gene_name "CUFF.396"; flanks "207989068-,207953305^"; structure "1^,2^"; splice_chain "207989068^,207988700^";
chr2	juncbase	jcn_only_AD	1168869	1215568	.	+	.	gene_id "jcn_only_AD.1724"; transcript_id "jcn_only_AD.1724"; gene_name ""; flanks "1168869-,1215568^"; structure "1^,2^"; splice_chain "1168869^,1206365^";
chr2	juncbase	alternative_acceptor	109102364	109102967	.	+	.	gene_id "alternative_acceptor.1028"; transcript_id "alternative_acceptor.1028"; gene_name "CUFF.333"; flanks "109102364-,109102967^"; structure "1-,2-"; splice_chain "109102891-,109102967-";
chr2	juncbase	alternative_acceptor	231934882	231937047	.	+	.	gene_id "alternative_acceptor.1029"; transcript_id "alternative_acceptor.1029"; gene_name ""; flanks "231934882-,231937047^"; structure "1-,2-"; splice_chain "231936903-,231937047-";
chr2	juncbase	jcn_only_AD	48757127	48807726	.	+	.	gene_id "jcn_only_AD.1725"; transcript_id "jcn_only_AD.1725"; gene_name "CUFF.278"; flanks "48757127-,48807726^"; structure "1^,2^"; splice_chain "48757127^,48796225^";
chr2	juncbase	alternative_donor	27712482	27708370	.	-	.	gene_id "alternative_donor.1451"; transcript_id "alternative_donor.1451"; gene_name "CUFF.226"; flanks "27712482-,27708370^"; structure "1^,2^"; splice_chain "27712482^,27709026^";
chr2	juncbase	jcn_only_AD	109065736	109066089	.	+	.	gene_id "jcn_only_AD.1726"; transcript_id "jcn_only_AD.1726"; gene_name "CUFF.333"; flanks "109065736-,109066089^"; structure "1^,2^"; splice_chain "109065736^,109065745^";
chr2	juncbase	jcn_only_AA	241404163	241404273	.	+	.	gene_id "jcn_only_AA.1360"; transcript_id "jcn_only_AA.1360"; gene_name "CUFF.418"; flanks "241404163-,241404273^"; structure "1-,2-"; splice_chain "241404252-,241404273-";
chr2	juncbase	alternative_donor	48898819	49003419	.	+	.	gene_id "alternative_donor.1452"; transcript_id "alternative_donor.1452"; gene_name "CUFF.278"; flanks "48898819-,49003419^"; structure "1^,2^"; splice_chain "48898819^,48996213^";
chr2	juncbase	alternative_donor	48996260	49003419	.	+	.	gene_id "alternative_donor.1453"; transcript_id "alternative_donor.1453"; gene_name "CUFF.278"; flanks "48996260-,49003419^"; structure "1^,2^"; splice_chain "48996213^,48996260^";
chr2	juncbase	jcn_only_AA	207989128	208030191	.	-	.	gene_id "jcn_only_AA.1361"; transcript_id "jcn_only_AA.1361"; gene_name "CUFF.396"; flanks "207989128-,208030191^"; structure "1-,2-"; splice_chain "208013924-,207989128-";
chr2	juncbase	alternative_donor	48757127	48807726	.	+	.	gene_id "alternative_donor.1454"; transcript_id "alternative_donor.1454"; gene_name "CUFF.278"; flanks "48757127-,48807726^"; structure "1^,2^"; splice_chain "48757127^,48796225^";
chr2	juncbase	alternative_donor	242577175	242590425	.	+	.	gene_id "alternative_donor.1455"; transcript_id "alternative_donor.1455"; gene_name "CUFF.422"; flanks "242577175-,242590425^"; structure "1^,2^"; splice_chain "242577139^,242577175^";
chr2	juncbase	alternative_donor	242577785	242590425	.	+	.	gene_id "alternative_donor.1456"; transcript_id "alternative_donor.1456"; gene_name "CUFF.422"; flanks "242577785-,242590425^"; structure "1^,2^"; splice_chain "242577139^,242577785^";
chr2	juncbase	jcn_only_AD	175712041	175711685	.	-	.	gene_id "jcn_only_AD.1727"; transcript_id "jcn_only_AD.1727"; gene_name ""; flanks "175712041-,175711685^"; structure "1^,2^"; splice_chain "175712447^,175712041^";
chr2	juncbase	jcn_only_AD	175740516	175711685	.	-	.	gene_id "jcn_only_AD.1728"; transcript_id "jcn_only_AD.1728"; gene_name ""; flanks "175740516-,175711685^"; structure "1^,2^"; splice_chain "175740516^,175712447^";
chr2	juncbase	cassette	73250317	73247393	.	-	.	gene_id "cassette.805"; transcript_id "cassette.805"; gene_name "CUFF.297"; flanks "73250317-,73247393^"; structure "0,1-2^"; splice_chain ",73249705-73249651^";
chr2	juncbase	intron_retention	242577139	242590425	.	+	.	gene_id "intron_retention.1072"; transcript_id "intron_retention.1072"; gene_name "CUFF.422"; flanks "242577139-,242590425^"; structure "0,1^2-"; splice_chain ",242577139^242590425-";
chr2	juncbase	alternative_acceptor	86397964	86398331	.	-	.	gene_id "alternative_acceptor.1030"; transcript_id "alternative_acceptor.1030"; gene_name "CUFF.307"; flanks "86397964-,86398331^"; structure "1-,2-"; splice_chain "86397967-,86397964-";
chr2	juncbase	cassette	160602448	160608913	.	+	.	gene_id "cassette.806"; transcript_id "cassette.806"; gene_name "CUFF.350"; flanks "160602448-,160608913^"; structure "0,1-2^"; splice_chain ",160604316-160605414^";
chr2	juncbase	jcn_only_AA	175223264	175243651	.	-	.	gene_id "jcn_only_AA.1362"; transcript_id "jcn_only_AA.1362"; gene_name "CUFF.370"; flanks "175223264-,175243651^"; structure "1-,2-"; splice_chain "175234742-,175223264-";
chr2	juncbase	jcn_only_AA	175216453	175243651	.	-	.	gene_id "jcn_only_AA.1363"; transcript_id "jcn_only_AA.1363"; gene_name "CUFF.370"; flanks "175216453-,175243651^"; structure "1-,2-"; splice_chain "175234742-,175216453-";
chr2	juncbase	alternative_acceptor	219457430	219458251	.	+	.	gene_id "alternative_acceptor.1031"; transcript_id "alternative_acceptor.1031"; gene_name "CUFF.403"; flanks "219457430-,219458251^"; structure "1-,2-"; splice_chain "219458251-,219458892-";
chr2	juncbase	alternative_acceptor	219457430	219458831	.	+	.	gene_id "alternative_acceptor.1032"; transcript_id "alternative_acceptor.1032"; gene_name "CUFF.403"; flanks "219457430-,219458831^"; structure "1-,2-"; splice_chain "219458831-,219458892-";
chr2	juncbase	jcn_only_AA	61761038	61764697	.	-	.	gene_id "jcn_only_AA.1364"; transcript_id "jcn_only_AA.1364"; gene_name "CUFF.283"; flanks "61761038-,61764697^"; structure "1-,2-"; splice_chain "61761813-,61761038-";
chr2	juncbase	alternative_acceptor	109068922	109085436	.	+	.	gene_id "alternative_acceptor.1033"; transcript_id "alternative_acceptor.1033"; gene_name "CUFF.333"; flanks "109068922-,109085436^"; structure "1-,2-"; splice_chain "109079044-,109085436-";
chr2	juncbase	alternative_donor	207630471	207631368	.	+	.	gene_id "alternative_donor.1457"; transcript_id "alternative_donor.1457"; gene_name "CUFF.394"; flanks "207630471-,207631368^"; structure "1^,2^"; splice_chain "207630378^,207630471^";
chr2	juncbase	alternative_donor	207630242	207631368	.	+	.	gene_id "alternative_donor.1458"; transcript_id "alternative_donor.1458"; gene_name "CUFF.394"; flanks "207630242-,207631368^"; structure "1^,2^"; splice_chain "207630242^,207630378^";
chr2	juncbase	alternative_donor	207630486	207631368	.	+	.	gene_id "alternative_donor.1459"; transcript_id "alternative_donor.1459"; gene_name "CUFF.394"; flanks "207630486-,207631368^"; structure "1^,2^"; splice_chain "207630378^,207630486^";
chr2	juncbase	jcn_only_AA	680151	696541	.	+	.	gene_id "jcn_only_AA.1365"; transcript_id "jcn_only_AA.1365"; gene_name ""; flanks "680151-,696541^"; structure "1-,2-"; splice_chain "681256-,696541-";
chr2	juncbase	cassette	73215387	73195662	.	-	.	gene_id "cassette.807"; transcript_id "cassette.807"; gene_name "CUFF.297"; flanks "73215387-,73195662^"; structure "0,1-2^"; splice_chain ",73198814-73198699^";
chr2	juncbase	alternative_donor	242610856	242611606	.	+	.	gene_id "alternative_donor.1460"; transcript_id "alternative_donor.1460"; gene_name "CUFF.422"; flanks "242610856-,242611606^"; structure "1^,2^"; splice_chain "242610820^,242610856^";
chr2	juncbase	alternative_donor	242610840	242611606	.	+	.	gene_id "alternative_donor.1461"; transcript_id "alternative_donor.1461"; gene_name "CUFF.422"; flanks "242610840-,242611606^"; structure "1^,2^"; splice_chain "242610820^,242610840^";
chr2	juncbase	jcn_only_AD	220094622	220094950	.	+	.	gene_id "jcn_only_AD.1729"; transcript_id "jcn_only_AD.1729"; gene_name "CUFF.409"; flanks "220094622-,220094950^"; structure "1^,2^"; splice_chain "220094622^,220094680^";
chr2	juncbase	jcn_only_AD	220094702	220094950	.	+	.	gene_id "jcn_only_AD.1730"; transcript_id "jcn_only_AD.1730"; gene_name "CUFF.409"; flanks "220094702-,220094950^"; structure "1^,2^"; splice_chain "220094680^,220094702^";
chr2	juncbase	jcn_only_AD	175711043	175689246	.	-	.	gene_id "jcn_only_AD.1731"; transcript_id "jcn_only_AD.1731"; gene_name ""; flanks "175711043-,175689246^"; structure "1^,2^"; splice_chain "175711043^,175711037^";
chr2	juncbase	jcn_only_AD	207630471	207631368	.	+	.	gene_id "jcn_only_AD.1732"; transcript_id "jcn_only_AD.1732"; gene_name "CUFF.394"; flanks "207630471-,207631368^"; structure "1^,2^"; splice_chain "207630242^,207630471^";
chr2	juncbase	jcn_only_AD	207630378	207631368	.	+	.	gene_id "jcn_only_AD.1733"; transcript_id "jcn_only_AD.1733"; gene_name "CUFF.394"; flanks "207630378-,207631368^"; structure "1^,2^"; splice_chain "207630242^,207630378^";
chr2	juncbase	jcn_only_AD	207630486	207631368	.	+	.	gene_id "jcn_only_AD.1734"; transcript_id "jcn_only_AD.1734"; gene_name "CUFF.394"; flanks "207630486-,207631368^"; structure "1^,2^"; splice_chain "207630242^,207630486^";
chr2	juncbase	intron_retention	109089355	109091991	.	+	.	gene_id "intron_retention.1073"; transcript_id "intron_retention.1073"; gene_name "CUFF.333"; flanks "109089355-,109091991^"; structure "0,1^2-"; splice_chain ",109089355^109091991-";
chr2	juncbase	alternative_acceptor	175223264	175243651	.	-	.	gene_id "alternative_acceptor.1034"; transcript_id "alternative_acceptor.1034"; gene_name "CUFF.370"; flanks "175223264-,175243651^"; structure "1-,2-"; splice_chain "175223264-,175216453-";
chr2	juncbase	alternative_acceptor	175234742	175243651	.	-	.	gene_id "alternative_acceptor.1035"; transcript_id "alternative_acceptor.1035"; gene_name "CUFF.370"; flanks "175234742-,175243651^"; structure "1-,2-"; splice_chain "175234742-,175216453-";
chr2	juncbase	alternative_acceptor	1251215	1263142	.	+	.	gene_id "alternative_acceptor.1036"; transcript_id "alternative_acceptor.1036"; gene_name "CUFF.195,CUFF.249"; flanks "1251215-,1263142^"; structure "1-,2-"; splice_chain "1260177-,1263142-";
chr2	juncbase	alternative_donor	48898819	49003419	.	+	.	gene_id "alternative_donor.1462"; transcript_id "alternative_donor.1462"; gene_name "CUFF.278"; flanks "48898819-,49003419^"; structure "1^,2^"; splice_chain "48898819^,48996260^";
chr2	juncbase	alternative_donor	48996213	49003419	.	+	.	gene_id "alternative_donor.1463"; transcript_id "alternative_donor.1463"; gene_name "CUFF.278"; flanks "48996213-,49003419^"; structure "1^,2^"; splice_chain "48996213^,48996260^";
chr2	juncbase	jcn_only_AD	61763845	61761038	.	-	.	gene_id "jcn_only_AD.1735"; transcript_id "jcn_only_AD.1735"; gene_name "CUFF.283"; flanks "61763845-,61761038^"; structure "1^,2^"; splice_chain "61764154^,61763845^";
chr2	juncbase	jcn_only_AD	61763337	61761038	.	-	.	gene_id "jcn_only_AD.1736"; transcript_id "jcn_only_AD.1736"; gene_name "CUFF.283"; flanks "61763337-,61761038^"; structure "1^,2^"; splice_chain "61764154^,61763337^";
chr2	juncbase	jcn_only_AD	61761558	61761038	.	-	.	gene_id "jcn_only_AD.1737"; transcript_id "jcn_only_AD.1737"; gene_name "CUFF.283"; flanks "61761558-,61761038^"; structure "1^,2^"; splice_chain "61764154^,61761558^";
chr2	juncbase	jcn_only_AD	61764697	61761038	.	-	.	gene_id "jcn_only_AD.1738"; transcript_id "jcn_only_AD.1738"; gene_name "CUFF.283"; flanks "61764697-,61761038^"; structure "1^,2^"; splice_chain "61764697^,61764154^";
chr2	juncbase	jcn_only_AD	61765627	61761038	.	-	.	gene_id "jcn_only_AD.1739"; transcript_id "jcn_only_AD.1739"; gene_name "CUFF.283"; flanks "61765627-,61761038^"; structure "1^,2^"; splice_chain "61765627^,61764154^";
chr2	juncbase	jcn_only_AD	61761693	61761038	.	-	.	gene_id "jcn_only_AD.1740"; transcript_id "jcn_only_AD.1740"; gene_name "CUFF.283"; flanks "61761693-,61761038^"; structure "1^,2^"; splice_chain "61764154^,61761693^";
chr2	juncbase	alternative_acceptor	1243548	1251099	.	+	.	gene_id "alternative_acceptor.1037"; transcript_id "alternative_acceptor.1037"; gene_name "CUFF.195"; flanks "1243548-,1251099^"; structure "1-,2-"; splice_chain "1246510-,1251099-";
chr2	juncbase	intron_retention	3469479	3482617	.	+	.	gene_id "intron_retention.1074"; transcript_id "intron_retention.1074"; gene_name ""; flanks "3469479-,3482617^"; structure "0,1^2-"; splice_chain ",3469479^3482617-";
chr2	juncbase	alternative_donor	61763337	61761038	.	-	.	gene_id "alternative_donor.1464"; transcript_id "alternative_donor.1464"; gene_name "CUFF.283"; flanks "61763337-,61761038^"; structure "1^,2^"; splice_chain "61763845^,61763337^";
chr2	juncbase	alternative_donor	61761558	61761038	.	-	.	gene_id "alternative_donor.1465"; transcript_id "alternative_donor.1465"; gene_name "CUFF.283"; flanks "61761558-,61761038^"; structure "1^,2^"; splice_chain "61763845^,61761558^";
chr2	juncbase	alternative_donor	61764697	61761038	.	-	.	gene_id "alternative_donor.1466"; transcript_id "alternative_donor.1466"; gene_name "CUFF.283"; flanks "61764697-,61761038^"; structure "1^,2^"; splice_chain "61764697^,61763845^";
chr2	juncbase	alternative_donor	61764154	61761038	.	-	.	gene_id "alternative_donor.1467"; transcript_id "alternative_donor.1467"; gene_name "CUFF.283"; flanks "61764154-,61761038^"; structure "1^,2^"; splice_chain "61764154^,61763845^";
chr2	juncbase	alternative_donor	61765627	61761038	.	-	.	gene_id "alternative_donor.1468"; transcript_id "alternative_donor.1468"; gene_name "CUFF.283"; flanks "61765627-,61761038^"; structure "1^,2^"; splice_chain "61765627^,61763845^";
chr2	juncbase	alternative_donor	61761693	61761038	.	-	.	gene_id "alternative_donor.1469"; transcript_id "alternative_donor.1469"; gene_name "CUFF.283"; flanks "61761693-,61761038^"; structure "1^,2^"; splice_chain "61763845^,61761693^";
chr2	juncbase	alternative_donor	220094622	220094950	.	+	.	gene_id "alternative_donor.1470"; transcript_id "alternative_donor.1470"; gene_name "CUFF.409"; flanks "220094622-,220094950^"; structure "1^,2^"; splice_chain "220094622^,220094680^";
chr2	juncbase	alternative_donor	220094702	220094950	.	+	.	gene_id "alternative_donor.1471"; transcript_id "alternative_donor.1471"; gene_name "CUFF.409"; flanks "220094702-,220094950^"; structure "1^,2^"; splice_chain "220094680^,220094702^";
chr2	juncbase	jcn_only_AA	16573594	16613773	.	+	.	gene_id "jcn_only_AA.1366"; transcript_id "jcn_only_AA.1366"; gene_name "CUFF.214"; flanks "16573594-,16613773^"; structure "1-,2-"; splice_chain "16612999-,16613773-";
chr2	juncbase	intron_retention	110883214	110882900	.	-	.	gene_id "intron_retention.1075"; transcript_id "intron_retention.1075"; gene_name ""; flanks "110883214-,110882900^"; structure "0,1^2-"; splice_chain ",110883214^110882900-";
chr2	juncbase	jcn_only_AA	242577139	242590425	.	+	.	gene_id "jcn_only_AA.1367"; transcript_id "jcn_only_AA.1367"; gene_name "CUFF.422"; flanks "242577139-,242590425^"; structure "1-,2-"; splice_chain "242577676-,242590425-";
chr2	juncbase	alternative_donor	61763845	61761038	.	-	.	gene_id "alternative_donor.1472"; transcript_id "alternative_donor.1472"; gene_name "CUFF.283"; flanks "61763845-,61761038^"; structure "1^,2^"; splice_chain "61763845^,61761693^";
chr2	juncbase	alternative_donor	61763337	61761038	.	-	.	gene_id "alternative_donor.1473"; transcript_id "alternative_donor.1473"; gene_name "CUFF.283"; flanks "61763337-,61761038^"; structure "1^,2^"; splice_chain "61763337^,61761693^";
chr2	juncbase	alternative_donor	61761558	61761038	.	-	.	gene_id "alternative_donor.1474"; transcript_id "alternative_donor.1474"; gene_name "CUFF.283"; flanks "61761558-,61761038^"; structure "1^,2^"; splice_chain "61761693^,61761558^";
chr2	juncbase	alternative_donor	61764697	61761038	.	-	.	gene_id "alternative_donor.1475"; transcript_id "alternative_donor.1475"; gene_name "CUFF.283"; flanks "61764697-,61761038^"; structure "1^,2^"; splice_chain "61764697^,61761693^";
chr2	juncbase	alternative_donor	61764154	61761038	.	-	.	gene_id "alternative_donor.1476"; transcript_id "alternative_donor.1476"; gene_name "CUFF.283"; flanks "61764154-,61761038^"; structure "1^,2^"; splice_chain "61764154^,61761693^";
chr2	juncbase	alternative_donor	61765627	61761038	.	-	.	gene_id "alternative_donor.1477"; transcript_id "alternative_donor.1477"; gene_name "CUFF.283"; flanks "61765627-,61761038^"; structure "1^,2^"; splice_chain "61765627^,61761693^";
chr2	juncbase	jcn_only_AA	242440334	242440893	.	-	.	gene_id "jcn_only_AA.1368"; transcript_id "jcn_only_AA.1368"; gene_name ""; flanks "242440334-,242440893^"; structure "1-,2-"; splice_chain "242440334-,242440262-";
chr2	juncbase	jcn_only_AA	242440492	242440893	.	-	.	gene_id "jcn_only_AA.1369"; transcript_id "jcn_only_AA.1369"; gene_name ""; flanks "242440492-,242440893^"; structure "1-,2-"; splice_chain "242440492-,242440262-";
chr2	juncbase	alternative_donor	1320147	1371115	.	+	.	gene_id "alternative_donor.1478"; transcript_id "alternative_donor.1478"; gene_name "CUFF.195"; flanks "1320147-,1371115^"; structure "1^,2^"; splice_chain "1320147^,1357636^";
chr2	juncbase	alternative_donor	46844109	46842324	.	-	.	gene_id "alternative_donor.1479"; transcript_id "alternative_donor.1479"; gene_name "CUFF.277"; flanks "46844109-,46842324^"; structure "1^,2^"; splice_chain "46844109^,46843726^";
chr2	juncbase	alternative_acceptor	73280680	73285657	.	-	.	gene_id "alternative_acceptor.1038"; transcript_id "alternative_acceptor.1038"; gene_name "CUFF.297"; flanks "73280680-,73285657^"; structure "1-,2-"; splice_chain "73280680-,73277028-";
chr2	juncbase	alternative_acceptor	73269714	73285657	.	-	.	gene_id "alternative_acceptor.1039"; transcript_id "alternative_acceptor.1039"; gene_name "CUFF.297"; flanks "73269714-,73285657^"; structure "1-,2-"; splice_chain "73277028-,73269714-";
chr2	juncbase	alternative_acceptor	73268790	73285657	.	-	.	gene_id "alternative_acceptor.1040"; transcript_id "alternative_acceptor.1040"; gene_name "CUFF.297"; flanks "73268790-,73285657^"; structure "1-,2-"; splice_chain "73277028-,73268790-";
chr2	juncbase	alternative_acceptor	73268060	73285657	.	-	.	gene_id "alternative_acceptor.1041"; transcript_id "alternative_acceptor.1041"; gene_name "CUFF.297"; flanks "73268060-,73285657^"; structure "1-,2-"; splice_chain "73277028-,73268060-";
chr2	juncbase	jcn_only_AD	220094680	220094950	.	+	.	gene_id "jcn_only_AD.1741"; transcript_id "jcn_only_AD.1741"; gene_name "CUFF.409"; flanks "220094680-,220094950^"; structure "1^,2^"; splice_chain "220094680^,220094702^";
chr2	juncbase	jcn_only_AD	220094622	220094950	.	+	.	gene_id "jcn_only_AD.1742"; transcript_id "jcn_only_AD.1742"; gene_name "CUFF.409"; flanks "220094622-,220094950^"; structure "1^,2^"; splice_chain "220094622^,220094702^";
chr2	juncbase	intron_retention	109111941	109113426	.	+	.	gene_id "intron_retention.1076"; transcript_id "intron_retention.1076"; gene_name "CUFF.333"; flanks "109111941-,109113426^"; structure "0,1^2-"; splice_chain ",109111941^109113426-";
chr2	juncbase	intron_retention	241402929	241404033	.	+	.	gene_id "intron_retention.1077"; transcript_id "intron_retention.1077"; gene_name "CUFF.418"; flanks "241402929-,241404033^"; structure "0,1^2-"; splice_chain ",241402929^241404033-";
chr2	juncbase	intron_retention	3469466	3481463	.	+	.	gene_id "intron_retention.1078"; transcript_id "intron_retention.1078"; gene_name ""; flanks "3469466-,3481463^"; structure "0,1^2-"; splice_chain ",3469466^3481463-";
chr2	juncbase	jcn_only_AA	4020664	4021135	.	-	.	gene_id "jcn_only_AA.1370"; transcript_id "jcn_only_AA.1370"; gene_name "CUFF.202"; flanks "4020664-,4021135^"; structure "1-,2-"; splice_chain "4020664-,4009393-";
chr2	juncbase	jcn_only_AA	4015878	4021135	.	-	.	gene_id "jcn_only_AA.1371"; transcript_id "jcn_only_AA.1371"; gene_name "CUFF.202"; flanks "4015878-,4021135^"; structure "1-,2-"; splice_chain "4015878-,4009393-";
chr2	juncbase	jcn_only_AA	4009484	4021135	.	-	.	gene_id "jcn_only_AA.1372"; transcript_id "jcn_only_AA.1372"; gene_name "CUFF.202"; flanks "4009484-,4021135^"; structure "1-,2-"; splice_chain "4009484-,4009393-";
chr2	juncbase	jcn_only_AA	4020692	4021135	.	-	.	gene_id "jcn_only_AA.1373"; transcript_id "jcn_only_AA.1373"; gene_name "CUFF.202"; flanks "4020692-,4021135^"; structure "1-,2-"; splice_chain "4020692-,4009393-";
chr2	juncbase	cassette	264782	262786	.	-	.	gene_id "cassette.808"; transcript_id "cassette.808"; gene_name "CUFF.190"; flanks "264782-,262786^"; structure "0,1-2^"; splice_chain ",263372-263211^";
chr2	juncbase	cassette	264084	253115	.	-	.	gene_id "cassette.809"; transcript_id "cassette.809"; gene_name "CUFF.190"; flanks "264084-,253115^"; structure "0,1-2^"; splice_chain ",263372-263211^";
chr2	juncbase	cassette	264782	253115	.	-	.	gene_id "cassette.810"; transcript_id "cassette.810"; gene_name "CUFF.190"; flanks "264782-,253115^"; structure "0,1-2^"; splice_chain ",263372-263211^";
chr2	juncbase	jcn_only_AA	1079341	1204789	.	+	.	gene_id "jcn_only_AA.1374"; transcript_id "jcn_only_AA.1374"; gene_name ""; flanks "1079341-,1204789^"; structure "1-,2-"; splice_chain "1093882-,1204789-";
chr2	juncbase	alternative_donor	48996260	49003419	.	+	.	gene_id "alternative_donor.1480"; transcript_id "alternative_donor.1480"; gene_name "CUFF.278"; flanks "48996260-,49003419^"; structure "1^,2^"; splice_chain "48898819^,48996260^";
chr2	juncbase	alternative_donor	48996213	49003419	.	+	.	gene_id "alternative_donor.1481"; transcript_id "alternative_donor.1481"; gene_name "CUFF.278"; flanks "48996213-,49003419^"; structure "1^,2^"; splice_chain "48898819^,48996213^";
chr2	juncbase	intron_retention	207653627	207655296	.	+	.	gene_id "intron_retention.1079"; transcript_id "intron_retention.1079"; gene_name "CUFF.394"; flanks "207653627-,207655296^"; structure "0,1^2-"; splice_chain ",207653627^207655296-";
chr2	juncbase	alternative_donor	208013706	207989128	.	-	.	gene_id "alternative_donor.1482"; transcript_id "alternative_donor.1482"; gene_name "CUFF.396"; flanks "208013706-,207989128^"; structure "1^,2^"; splice_chain "208013706^,207998791^";
chr2	juncbase	alternative_donor	208030191	207989128	.	-	.	gene_id "alternative_donor.1483"; transcript_id "alternative_donor.1483"; gene_name "CUFF.396"; flanks "208030191-,207989128^"; structure "1^,2^"; splice_chain "208030191^,207998791^";
chr2	juncbase	alternative_donor	208031864	207989128	.	-	.	gene_id "alternative_donor.1484"; transcript_id "alternative_donor.1484"; gene_name "CUFF.396"; flanks "208031864-,207989128^"; structure "1^,2^"; splice_chain "208031864^,207998791^";
chr2	juncbase	jcn_only_AD	48996260	49003419	.	+	.	gene_id "jcn_only_AD.1743"; transcript_id "jcn_only_AD.1743"; gene_name "CUFF.278"; flanks "48996260-,49003419^"; structure "1^,2^"; splice_chain "48898819^,48996260^";
chr2	juncbase	jcn_only_AD	48996213	49003419	.	+	.	gene_id "jcn_only_AD.1744"; transcript_id "jcn_only_AD.1744"; gene_name "CUFF.278"; flanks "48996213-,49003419^"; structure "1^,2^"; splice_chain "48898819^,48996213^";
chr2	juncbase	jcn_only_AD	191334375	191334484	.	+	.	gene_id "jcn_only_AD.1745"; transcript_id "jcn_only_AD.1745"; gene_name "CUFF.384"; flanks "191334375-,191334484^"; structure "1^,2^"; splice_chain "191302287^,191334375^";
chr2	juncbase	jcn_only_AD	191307731	191334484	.	+	.	gene_id "jcn_only_AD.1746"; transcript_id "jcn_only_AD.1746"; gene_name "CUFF.384"; flanks "191307731-,191334484^"; structure "1^,2^"; splice_chain "191302287^,191307731^";
chr2	juncbase	intron_retention	3469466	3482617	.	+	.	gene_id "intron_retention.1080"; transcript_id "intron_retention.1080"; gene_name ""; flanks "3469466-,3482617^"; structure "0,1^2-"; splice_chain ",3469466^3482617-";
chr2	juncbase	intron_retention	219461021	219461058	.	+	.	gene_id "intron_retention.1081"; transcript_id "intron_retention.1081"; gene_name "CUFF.403"; flanks "219461021-,219461058^"; structure "0,1^2-"; splice_chain ",219461021^219461058-";
chr2	juncbase	intron_retention	242437031	242435949	.	-	.	gene_id "intron_retention.1082"; transcript_id "intron_retention.1082"; gene_name "CUFF.421"; flanks "242437031-,242435949^"; structure "0,1^2-"; splice_chain ",242437031^242435949-";
chr2	juncbase	jcn_only_AD	3464107	3469368	.	+	.	gene_id "jcn_only_AD.1747"; transcript_id "jcn_only_AD.1747"; gene_name "CUFF.198"; flanks "3464107-,3469368^"; structure "1^,2^"; splice_chain "3464107^,3466842^";
chr2	juncbase	cassette	177502190	177497853	.	-	.	gene_id "cassette.811"; transcript_id "cassette.811"; gene_name "CUFF.376"; flanks "177502190-,177497853^"; structure "0,1-2^"; splice_chain ",177498468-177498093^";
chr2	juncbase	jcn_only_AA	166732742	166737189	.	-	.	gene_id "jcn_only_AA.1375"; transcript_id "jcn_only_AA.1375"; gene_name "CUFF.352"; flanks "166732742-,166737189^"; structure "1-,2-"; splice_chain "166736477-,166732742-";
chr2	juncbase	alternative_donor	242436715	242435949	.	-	.	gene_id "alternative_donor.1485"; transcript_id "alternative_donor.1485"; gene_name "CUFF.421"; flanks "242436715-,242435949^"; structure "1^,2^"; splice_chain "242436715^,242436597^";
chr2	juncbase	alternative_donor	242437031	242435949	.	-	.	gene_id "alternative_donor.1486"; transcript_id "alternative_donor.1486"; gene_name "CUFF.421"; flanks "242437031-,242435949^"; structure "1^,2^"; splice_chain "242437031^,242436597^";
chr2	juncbase	cassette	242447421	242439696	.	-	.	gene_id "cassette.812"; transcript_id "cassette.812"; gene_name "CUFF.421"; flanks "242447421-,242439696^"; structure "0,1-2^"; splice_chain ",242440211-242440155^";
chr2	juncbase	jcn_only_AD	208013706	207989128	.	-	.	gene_id "jcn_only_AD.1748"; transcript_id "jcn_only_AD.1748"; gene_name "CUFF.396"; flanks "208013706-,207989128^"; structure "1^,2^"; splice_chain "208013706^,207998791^";
chr2	juncbase	jcn_only_AD	208030191	207989128	.	-	.	gene_id "jcn_only_AD.1749"; transcript_id "jcn_only_AD.1749"; gene_name "CUFF.396"; flanks "208030191-,207989128^"; structure "1^,2^"; splice_chain "208030191^,207998791^";
chr2	juncbase	jcn_only_AD	208031864	207989128	.	-	.	gene_id "jcn_only_AD.1750"; transcript_id "jcn_only_AD.1750"; gene_name "CUFF.396"; flanks "208031864-,207989128^"; structure "1^,2^"; splice_chain "208031864^,207998791^";
chr2	juncbase	alternative_acceptor	27724096	27726381	.	+	.	gene_id "alternative_acceptor.1042"; transcript_id "alternative_acceptor.1042"; gene_name "CUFF.227"; flanks "27724096-,27726381^"; structure "1-,2-"; splice_chain "27724557-,27726381-";
chr2	juncbase	intron_retention	110922097	110920712	.	-	.	gene_id "intron_retention.1083"; transcript_id "intron_retention.1083"; gene_name ""; flanks "110922097-,110920712^"; structure "0,1^2-"; splice_chain ",110922097^110920712-";
chr2	juncbase	alternative_donor	1133495	1161234	.	+	.	gene_id "alternative_donor.1487"; transcript_id "alternative_donor.1487"; gene_name "CUFF.195"; flanks "1133495-,1161234^"; structure "1^,2^"; splice_chain "1133495^,1158975^";
chr2	juncbase	alternative_donor	1159411	1161234	.	+	.	gene_id "alternative_donor.1488"; transcript_id "alternative_donor.1488"; gene_name "CUFF.195"; flanks "1159411-,1161234^"; structure "1^,2^"; splice_chain "1158975^,1159411^";
chr2	juncbase	jcn_only_AA	38231359	38244329	.	+	.	gene_id "jcn_only_AA.1376"; transcript_id "jcn_only_AA.1376"; gene_name "CUFF.269"; flanks "38231359-,38244329^"; structure "1-,2-"; splice_chain "38239746-,38244329-";
chr2	juncbase	jcn_only_AA	38231359	38294125	.	+	.	gene_id "jcn_only_AA.1377"; transcript_id "jcn_only_AA.1377"; gene_name "CUFF.269"; flanks "38231359-,38294125^"; structure "1-,2-"; splice_chain "38239746-,38294125-";
chr2	juncbase	alternative_acceptor	175223264	175243651	.	-	.	gene_id "alternative_acceptor.1043"; transcript_id "alternative_acceptor.1043"; gene_name "CUFF.370"; flanks "175223264-,175243651^"; structure "1-,2-"; splice_chain "175234742-,175223264-";
chr2	juncbase	alternative_acceptor	175216453	175243651	.	-	.	gene_id "alternative_acceptor.1044"; transcript_id "alternative_acceptor.1044"; gene_name "CUFF.370"; flanks "175216453-,175243651^"; structure "1-,2-"; splice_chain "175234742-,175216453-";
chr2	juncbase	jcn_only_AD	3405664	3425652	.	+	.	gene_id "jcn_only_AD.1751"; transcript_id "jcn_only_AD.1751"; gene_name "CUFF.198"; flanks "3405664-,3425652^"; structure "1^,2^"; splice_chain "3405664^,3425557^";
chr2	juncbase	intron_retention	46843726	46842324	.	-	.	gene_id "intron_retention.1084"; transcript_id "intron_retention.1084"; gene_name "CUFF.277"; flanks "46843726-,46842324^"; structure "0,1^2-"; splice_chain ",46843726^46842324-";
chr2	juncbase	alternative_donor	160615846	160619391	.	+	.	gene_id "alternative_donor.1489"; transcript_id "alternative_donor.1489"; gene_name "CUFF.350"; flanks "160615846-,160619391^"; structure "1^,2^"; splice_chain "160615846^,160615869^";
chr2	juncbase	cassette	263211	253115	.	-	.	gene_id "cassette.813"; transcript_id "cassette.813"; gene_name "CUFF.190"; flanks "263211-,253115^"; structure "0,1-2^"; splice_chain ",260702-260085^";
chr2	juncbase	cassette	262631	253115	.	-	.	gene_id "cassette.814"; transcript_id "cassette.814"; gene_name "CUFF.190"; flanks "262631-,253115^"; structure "0,1-2^"; splice_chain ",260702-260085^";
chr2	juncbase	jcn_only_AD	288553	287892	.	-	.	gene_id "jcn_only_AD.1752"; transcript_id "jcn_only_AD.1752"; gene_name ""; flanks "288553-,287892^"; structure "1^,2^"; splice_chain "288553^,288013^";
chr2	juncbase	jcn_only_AD	48898819	49003419	.	+	.	gene_id "jcn_only_AD.1753"; transcript_id "jcn_only_AD.1753"; gene_name "CUFF.278"; flanks "48898819-,49003419^"; structure "1^,2^"; splice_chain "48898819^,48996260^";
chr2	juncbase	jcn_only_AD	48996213	49003419	.	+	.	gene_id "jcn_only_AD.1754"; transcript_id "jcn_only_AD.1754"; gene_name "CUFF.278"; flanks "48996213-,49003419^"; structure "1^,2^"; splice_chain "48996213^,48996260^";
chr2	juncbase	alternative_donor	109068922	109085436	.	+	.	gene_id "alternative_donor.1490"; transcript_id "alternative_donor.1490"; gene_name "CUFF.333"; flanks "109068922-,109085436^"; structure "1^,2^"; splice_chain "109068922^,109079141^";
chr2	juncbase	jcn_only_AA	253115	260085	.	-	.	gene_id "jcn_only_AA.1378"; transcript_id "jcn_only_AA.1378"; gene_name "CUFF.190"; flanks "253115-,260085^"; structure "1-,2-"; splice_chain "256690-,253115-";
chr2	juncbase	intron_retention	242439588	242438829	.	-	.	gene_id "intron_retention.1085"; transcript_id "intron_retention.1085"; gene_name "CUFF.421"; flanks "242439588-,242438829^"; structure "0,1^2-"; splice_chain ",242439588^242438829-";
chr2	juncbase	intron_retention	242590526	242592927	.	+	.	gene_id "intron_retention.1086"; transcript_id "intron_retention.1086"; gene_name ""; flanks "242590526-,242592927^"; structure "0,1^2-"; splice_chain ",242590526^242592927-";
chr2	juncbase	intron_retention	99225474	99226106	.	+	.	gene_id "intron_retention.1087"; transcript_id "intron_retention.1087"; gene_name "CUFF.320"; flanks "99225474-,99226106^"; structure "0,1^2-"; splice_chain ",99225474^99226106-";
chr2	juncbase	cassette	1204916	1243510	.	+	.	gene_id "cassette.815"; transcript_id "cassette.815"; gene_name "CUFF.195"; flanks "1204916-,1243510^"; structure "0,1-2^"; splice_chain ",1241660-1241789^";
chr2	juncbase	intron_retention	220099010	220099548	.	+	.	gene_id "intron_retention.1088"; transcript_id "intron_retention.1088"; gene_name "CUFF.409"; flanks "220099010-,220099548^"; structure "0,1^2-"; splice_chain ",220099010^220099548-";
chr2	juncbase	cassette	177053147	177042222	.	-	.	gene_id "cassette.816"; transcript_id "cassette.816"; gene_name "CUFF.375"; flanks "177053147-,177042222^"; structure "0,1-2^"; splice_chain ",177043826-177043757^";
chr2	juncbase	alternative_acceptor	204354809	204355937	.	-	.	gene_id "alternative_acceptor.1045"; transcript_id "alternative_acceptor.1045"; gene_name "CUFF.392"; flanks "204354809-,204355937^"; structure "1-,2-"; splice_chain "204354812-,204354809-";
chr2	juncbase	jcn_only_AD	61763845	61761038	.	-	.	gene_id "jcn_only_AD.1755"; transcript_id "jcn_only_AD.1755"; gene_name "CUFF.283"; flanks "61763845-,61761038^"; structure "1^,2^"; splice_chain "61763845^,61761693^";
chr2	juncbase	jcn_only_AD	61763337	61761038	.	-	.	gene_id "jcn_only_AD.1756"; transcript_id "jcn_only_AD.1756"; gene_name "CUFF.283"; flanks "61763337-,61761038^"; structure "1^,2^"; splice_chain "61763337^,61761693^";
chr2	juncbase	jcn_only_AD	61761558	61761038	.	-	.	gene_id "jcn_only_AD.1757"; transcript_id "jcn_only_AD.1757"; gene_name "CUFF.283"; flanks "61761558-,61761038^"; structure "1^,2^"; splice_chain "61761693^,61761558^";
chr2	juncbase	jcn_only_AD	61764697	61761038	.	-	.	gene_id "jcn_only_AD.1758"; transcript_id "jcn_only_AD.1758"; gene_name "CUFF.283"; flanks "61764697-,61761038^"; structure "1^,2^"; splice_chain "61764697^,61761693^";
chr2	juncbase	jcn_only_AD	61764154	61761038	.	-	.	gene_id "jcn_only_AD.1759"; transcript_id "jcn_only_AD.1759"; gene_name "CUFF.283"; flanks "61764154-,61761038^"; structure "1^,2^"; splice_chain "61764154^,61761693^";
chr2	juncbase	jcn_only_AD	61765627	61761038	.	-	.	gene_id "jcn_only_AD.1760"; transcript_id "jcn_only_AD.1760"; gene_name "CUFF.283"; flanks "61765627-,61761038^"; structure "1^,2^"; splice_chain "61765627^,61761693^";
chr2	juncbase	jcn_only_AD	174136239	174072386	.	-	.	gene_id "jcn_only_AD.1761"; transcript_id "jcn_only_AD.1761"; gene_name "CUFF.364"; flanks "174136239-,174072386^"; structure "1^,2^"; splice_chain "174136239^,174074375^";
chr2	juncbase	alternative_acceptor	33477911	33482435	.	+	.	gene_id "alternative_acceptor.1046"; transcript_id "alternative_acceptor.1046"; gene_name "CUFF.249"; flanks "33477911-,33482435^"; structure "1-,2-"; splice_chain "33482435-,33482510-";
chr2	juncbase	alternative_acceptor	33477911	33482351	.	+	.	gene_id "alternative_acceptor.1047"; transcript_id "alternative_acceptor.1047"; gene_name "CUFF.249"; flanks "33477911-,33482351^"; structure "1-,2-"; splice_chain "33482351-,33482510-";
chr2	juncbase	cassette	166727307	166714914	.	-	.	gene_id "cassette.817"; transcript_id "cassette.817"; gene_name "CUFF.352"; flanks "166727307-,166714914^"; structure "0,1-2^"; splice_chain ",166719575-166719454^";
chr2	juncbase	cassette	171356318	171371431	.	+	.	gene_id "cassette.818"; transcript_id "cassette.818"; gene_name "CUFF.360"; flanks "171356318-,171371431^"; structure "0,1-2^"; splice_chain ",171358295-171358375^";
chr2	juncbase	jcn_only_AA	191362445	191364741	.	+	.	gene_id "jcn_only_AA.1379"; transcript_id "jcn_only_AA.1379"; gene_name "CUFF.384,CUFF.403"; flanks "191362445-,191364741^"; structure "1-,2-"; splice_chain "191364558-,191364741-";
chr2	juncbase	cassette	242438054	242437102	.	-	.	gene_id "cassette.819"; transcript_id "cassette.819"; gene_name "CUFF.421"; flanks "242438054-,242437102^"; structure "0,1-2^"; splice_chain ",242437764-242437650^";
chr2	juncbase	jcn_only_AA	33477911	33482435	.	+	.	gene_id "jcn_only_AA.1380"; transcript_id "jcn_only_AA.1380"; gene_name "CUFF.194"; flanks "33477911-,33482435^"; structure "1-,2-"; splice_chain "33482351-,33482435-";
chr2	juncbase	jcn_only_AA	33477911	33482510	.	+	.	gene_id "jcn_only_AA.1381"; transcript_id "jcn_only_AA.1381"; gene_name "CUFF.194"; flanks "33477911-,33482510^"; structure "1-,2-"; splice_chain "33482351-,33482510-";
chr2	juncbase	jcn_only_AD	175816892	175809671	.	-	.	gene_id "jcn_only_AD.1762"; transcript_id "jcn_only_AD.1762"; gene_name "CUFF.371"; flanks "175816892-,175809671^"; structure "1^,2^"; splice_chain "175816892^,175809898^";
chr2	juncbase	jcn_only_AA	175223264	175243651	.	-	.	gene_id "jcn_only_AA.1382"; transcript_id "jcn_only_AA.1382"; gene_name "CUFF.370"; flanks "175223264-,175243651^"; structure "1-,2-"; splice_chain "175223264-,175216453-";
chr2	juncbase	jcn_only_AA	175234742	175243651	.	-	.	gene_id "jcn_only_AA.1383"; transcript_id "jcn_only_AA.1383"; gene_name "CUFF.370"; flanks "175234742-,175243651^"; structure "1-,2-"; splice_chain "175234742-,175216453-";
chr2	juncbase	intron_retention	88874879	88874595	.	-	.	gene_id "intron_retention.1089"; transcript_id "intron_retention.1089"; gene_name ""; flanks "88874879-,88874595^"; structure "0,1^2-"; splice_chain ",88874879^88874595-";
chr2	juncbase	alternative_donor	3469466	3481466	.	+	.	gene_id "alternative_donor.1491"; transcript_id "alternative_donor.1491"; gene_name "CUFF.198"; flanks "3469466-,3481466^"; structure "1^,2^"; splice_chain "3469466^,3476373^";
chr2	juncbase	intron_retention	61752627	61752468	.	-	.	gene_id "intron_retention.1090"; transcript_id "intron_retention.1090"; gene_name ""; flanks "61752627-,61752468^"; structure "0,1^2-"; splice_chain ",61752627^61752468-";
chr2	juncbase	alternative_acceptor	73280680	73285657	.	-	.	gene_id "alternative_acceptor.1048"; transcript_id "alternative_acceptor.1048"; gene_name "CUFF.297"; flanks "73280680-,73285657^"; structure "1-,2-"; splice_chain "73280680-,73268060-";
chr2	juncbase	alternative_acceptor	73269714	73285657	.	-	.	gene_id "alternative_acceptor.1049"; transcript_id "alternative_acceptor.1049"; gene_name "CUFF.297"; flanks "73269714-,73285657^"; structure "1-,2-"; splice_chain "73269714-,73268060-";
chr2	juncbase	alternative_acceptor	73277028	73285657	.	-	.	gene_id "alternative_acceptor.1050"; transcript_id "alternative_acceptor.1050"; gene_name "CUFF.297"; flanks "73277028-,73285657^"; structure "1-,2-"; splice_chain "73277028-,73268060-";
chr2	juncbase	alternative_acceptor	73268790	73285657	.	-	.	gene_id "alternative_acceptor.1051"; transcript_id "alternative_acceptor.1051"; gene_name "CUFF.297"; flanks "73268790-,73285657^"; structure "1-,2-"; splice_chain "73268790-,73268060-";
chr2	juncbase	cassette	263211	260702	.	-	.	gene_id "cassette.820"; transcript_id "cassette.820"; gene_name "CUFF.190"; flanks "263211-,260702^"; structure "0,1-2^"; splice_chain ",262750-262631^";
chr2	juncbase	cassette	263211	253115	.	-	.	gene_id "cassette.821"; transcript_id "cassette.821"; gene_name "CUFF.190"; flanks "263211-,253115^"; structure "0,1-2^"; splice_chain ",262750-262631^";
chr2	juncbase	intron_retention	220100034	220100196	.	+	.	gene_id "intron_retention.1091"; transcript_id "intron_retention.1091"; gene_name "CUFF.409"; flanks "220100034-,220100196^"; structure "0,1^2-"; splice_chain ",220100034^220100196-";
chr2	juncbase	alternative_acceptor	73280680	73285657	.	-	.	gene_id "alternative_acceptor.1052"; transcript_id "alternative_acceptor.1052"; gene_name "CUFF.297"; flanks "73280680-,73285657^"; structure "1-,2-"; splice_chain "73280680-,73269714-";
chr2	juncbase	alternative_acceptor	73277028	73285657	.	-	.	gene_id "alternative_acceptor.1053"; transcript_id "alternative_acceptor.1053"; gene_name "CUFF.297"; flanks "73277028-,73285657^"; structure "1-,2-"; splice_chain "73277028-,73269714-";
chr2	juncbase	alternative_acceptor	73268790	73285657	.	-	.	gene_id "alternative_acceptor.1054"; transcript_id "alternative_acceptor.1054"; gene_name "CUFF.297"; flanks "73268790-,73285657^"; structure "1-,2-"; splice_chain "73269714-,73268790-";
chr2	juncbase	alternative_acceptor	73268060	73285657	.	-	.	gene_id "alternative_acceptor.1055"; transcript_id "alternative_acceptor.1055"; gene_name "CUFF.297"; flanks "73268060-,73285657^"; structure "1-,2-"; splice_chain "73269714-,73268060-";
chr2	juncbase	alternative_donor	208013706	207989128	.	-	.	gene_id "alternative_donor.1492"; transcript_id "alternative_donor.1492"; gene_name ""; flanks "208013706-,207989128^"; structure "1^,2^"; splice_chain "208030191^,208013706^";
chr2	juncbase	alternative_donor	207998791	207989128	.	-	.	gene_id "alternative_donor.1493"; transcript_id "alternative_donor.1493"; gene_name ""; flanks "207998791-,207989128^"; structure "1^,2^"; splice_chain "208030191^,207998791^";
chr2	juncbase	alternative_donor	208031864	207989128	.	-	.	gene_id "alternative_donor.1494"; transcript_id "alternative_donor.1494"; gene_name ""; flanks "208031864-,207989128^"; structure "1^,2^"; splice_chain "208031864^,208030191^";
chr2	juncbase	intron_retention	207655410	207656407	.	+	.	gene_id "intron_retention.1092"; transcript_id "intron_retention.1092"; gene_name "CUFF.394"; flanks "207655410-,207656407^"; structure "0,1^2-"; splice_chain ",207655410^207656407-";
chr2	juncbase	alternative_donor	191362445	191364741	.	+	.	gene_id "alternative_donor.1495"; transcript_id "alternative_donor.1495"; gene_name "CUFF.384"; flanks "191362445-,191364741^"; structure "1^,2^"; splice_chain "191362445^,191364582^";
chr2	juncbase	cassette	204341799	204326648	.	-	.	gene_id "cassette.822"; transcript_id "cassette.822"; gene_name "CUFF.392"; flanks "204341799-,204326648^"; structure "0,1-2^"; splice_chain ",204335036-204334962^";
chr2	juncbase	cassette	204354307	204326648	.	-	.	gene_id "cassette.823"; transcript_id "cassette.823"; gene_name "CUFF.392"; flanks "204354307-,204326648^"; structure "0,1-2^"; splice_chain ",204335036-204334962^";
chr2	juncbase	intron_retention	264084	253115	.	-	.	gene_id "intron_retention.1093"; transcript_id "intron_retention.1093"; gene_name ""; flanks "264084-,253115^"; structure "0,1^2-"; splice_chain ",264084^253115-";
chr2	juncbase	jcn_only_AA	110920709	110922265	.	-	.	gene_id "jcn_only_AA.1384"; transcript_id "jcn_only_AA.1384"; gene_name "CUFF.336"; flanks "110920709-,110922265^"; structure "1-,2-"; splice_chain "110920712-,110920709-";
chr2	juncbase	alternative_donor	101549463	101554215	.	+	.	gene_id "alternative_donor.1496"; transcript_id "alternative_donor.1496"; gene_name "CUFF.323"; flanks "101549463-,101554215^"; structure "1^,2^"; splice_chain "101549463^,101550622^";
chr2	juncbase	intron_retention	110883214	110881640	.	-	.	gene_id "intron_retention.1094"; transcript_id "intron_retention.1094"; gene_name "CUFF.336"; flanks "110883214-,110881640^"; structure "0,1^2-"; splice_chain ",110883214^110881640-";
chr2	juncbase	alternative_acceptor	79364463	79365093	.	-	.	gene_id "alternative_acceptor.1056"; transcript_id "alternative_acceptor.1056"; gene_name "CUFF.304"; flanks "79364463-,79365093^"; structure "1-,2-"; splice_chain "79364468-,79364463-";
chr2	juncbase	intron_retention	110886763	110883258	.	-	.	gene_id "intron_retention.1095"; transcript_id "intron_retention.1095"; gene_name "CUFF.336"; flanks "110886763-,110883258^"; structure "0,1^2-"; splice_chain ",110886763^110883258-";
chr2	juncbase	jcn_only_AD	177042743	177042549	.	-	.	gene_id "jcn_only_AD.1763"; transcript_id "jcn_only_AD.1763"; gene_name ""; flanks "177042743-,177042549^"; structure "1^,2^"; splice_chain "177042743^,177042731^";
chr2	juncbase	jcn_only_AA	280149	283111	.	-	.	gene_id "jcn_only_AA.1385"; transcript_id "jcn_only_AA.1385"; gene_name "CUFF.191"; flanks "280149-,283111^"; structure "1-,2-"; splice_chain "280152-,280149-";
chr2	juncbase	alternative_donor	234160	231191	.	-	.	gene_id "alternative_donor.1497"; transcript_id "alternative_donor.1497"; gene_name "CUFF.190"; flanks "234160-,231191^"; structure "1^,2^"; splice_chain "234160^,233101^";
chr2	juncbase	jcn_only_AD	242610856	242611606	.	+	.	gene_id "jcn_only_AD.1764"; transcript_id "jcn_only_AD.1764"; gene_name "CUFF.422"; flanks "242610856-,242611606^"; structure "1^,2^"; splice_chain "242610820^,242610856^";
chr2	juncbase	jcn_only_AD	242610840	242611606	.	+	.	gene_id "jcn_only_AD.1765"; transcript_id "jcn_only_AD.1765"; gene_name "CUFF.422"; flanks "242610840-,242611606^"; structure "1^,2^"; splice_chain "242610820^,242610840^";
chr2	juncbase	alternative_acceptor	25180843	25186274	.	-	.	gene_id "alternative_acceptor.1057"; transcript_id "alternative_acceptor.1057"; gene_name "CUFF.222"; flanks "25180843-,25186274^"; structure "1-,2-"; splice_chain "25181470-,25180843-";
chr2	juncbase	alternative_donor	207630378	207631368	.	+	.	gene_id "alternative_donor.1498"; transcript_id "alternative_donor.1498"; gene_name "CUFF.394"; flanks "207630378-,207631368^"; structure "1^,2^"; splice_chain "207630378^,207630471^";
chr2	juncbase	alternative_donor	207630242	207631368	.	+	.	gene_id "alternative_donor.1499"; transcript_id "alternative_donor.1499"; gene_name "CUFF.394"; flanks "207630242-,207631368^"; structure "1^,2^"; splice_chain "207630242^,207630471^";
chr2	juncbase	alternative_donor	207630486	207631368	.	+	.	gene_id "alternative_donor.1500"; transcript_id "alternative_donor.1500"; gene_name "CUFF.394"; flanks "207630486-,207631368^"; structure "1^,2^"; splice_chain "207630471^,207630486^";
chr2	juncbase	alternative_donor	242436715	242435949	.	-	.	gene_id "alternative_donor.1501"; transcript_id "alternative_donor.1501"; gene_name ""; flanks "242436715-,242435949^"; structure "1^,2^"; splice_chain "242437031^,242436715^";
chr2	juncbase	alternative_donor	242436597	242435949	.	-	.	gene_id "alternative_donor.1502"; transcript_id "alternative_donor.1502"; gene_name ""; flanks "242436597-,242435949^"; structure "1^,2^"; splice_chain "242437031^,242436597^";
chr2	juncbase	cassette	197458232	197298182	.	-	.	gene_id "cassette.824"; transcript_id "cassette.824"; gene_name "CUFF.388"; flanks "197458232-,197298182^"; structure "0,1-2^"; splice_chain ",197358099-197357968^";
chr2	juncbase	alternative_donor	231023	230044	.	-	.	gene_id "alternative_donor.1503"; transcript_id "alternative_donor.1503"; gene_name "CUFF.190"; flanks "231023-,230044^"; structure "1^,2^"; splice_chain "231023^,230547^";
chr2	juncbase	jcn_only_AA	219449444	219452309	.	+	.	gene_id "jcn_only_AA.1386"; transcript_id "jcn_only_AA.1386"; gene_name "CUFF.195,CUFF.403"; flanks "219449444-,219452309^"; structure "1-,2-"; splice_chain "219452028-,219452309-";
chr2	juncbase	jcn_only_AD	110958998	110927575	.	-	.	gene_id "jcn_only_AD.1766"; transcript_id "jcn_only_AD.1766"; gene_name "CUFF.191,CUFF.336"; flanks "110958998-,110927575^"; structure "1^,2^"; splice_chain "110958998^,110936000^";
chr2	juncbase	intron_retention	86400773	86398504	.	-	.	gene_id "intron_retention.1096"; transcript_id "intron_retention.1096"; gene_name "CUFF.307"; flanks "86400773-,86398504^"; structure "0,1^2-"; splice_chain ",86400773^86398504-";
chr2	juncbase	jcn_only_AD	46844109	46842324	.	-	.	gene_id "jcn_only_AD.1767"; transcript_id "jcn_only_AD.1767"; gene_name "CUFF.277"; flanks "46844109-,46842324^"; structure "1^,2^"; splice_chain "46844109^,46843726^";
chr2	juncbase	alternative_acceptor	231191	234160	.	-	.	gene_id "alternative_acceptor.1058"; transcript_id "alternative_acceptor.1058"; gene_name "CUFF.190"; flanks "231191-,234160^"; structure "1-,2-"; splice_chain "233229-,231191-";
chr2	juncbase	jcn_only_AD	73215387	73198814	.	-	.	gene_id "jcn_only_AD.1768"; transcript_id "jcn_only_AD.1768"; gene_name "CUFF.297,CUFF.336"; flanks "73215387-,73198814^"; structure "1^,2^"; splice_chain "73215387^,73208138^";
chr2	juncbase	jcn_only_AA	33572577	33585670	.	+	.	gene_id "jcn_only_AA.1387"; transcript_id "jcn_only_AA.1387"; gene_name ""; flanks "33572577-,33585670^"; structure "1-,2-"; splice_chain "33585664-,33585670-";
chr2	juncbase	intron_retention	46844109	46842324	.	-	.	gene_id "intron_retention.1097"; transcript_id "intron_retention.1097"; gene_name "CUFF.277"; flanks "46844109-,46842324^"; structure "0,1^2-"; splice_chain ",46844109^46842324-";
chr2	juncbase	intron_retention	177042743	177042222	.	-	.	gene_id "intron_retention.1098"; transcript_id "intron_retention.1098"; gene_name ""; flanks "177042743-,177042222^"; structure "0,1^2-"; splice_chain ",177042743^177042222-";
chr2	juncbase	jcn_only_AA	38231359	38239746	.	+	.	gene_id "jcn_only_AA.1388"; transcript_id "jcn_only_AA.1388"; gene_name ""; flanks "38231359-,38239746^"; structure "1-,2-"; splice_chain "38239746-,38244329-";
chr2	juncbase	jcn_only_AA	38231359	38294125	.	+	.	gene_id "jcn_only_AA.1389"; transcript_id "jcn_only_AA.1389"; gene_name ""; flanks "38231359-,38294125^"; structure "1-,2-"; splice_chain "38244329-,38294125-";
chr2	juncbase	jcn_only_AA	86831601	86839282	.	-	.	gene_id "jcn_only_AA.1390"; transcript_id "jcn_only_AA.1390"; gene_name "CUFF.309"; flanks "86831601-,86839282^"; structure "1-,2-"; splice_chain "86832541-,86831601-";
chr2	juncbase	jcn_only_AD	61763845	61761038	.	-	.	gene_id "jcn_only_AD.1769"; transcript_id "jcn_only_AD.1769"; gene_name "CUFF.283"; flanks "61763845-,61761038^"; structure "1^,2^"; splice_chain "61763845^,61763337^";
chr2	juncbase	jcn_only_AD	61761558	61761038	.	-	.	gene_id "jcn_only_AD.1770"; transcript_id "jcn_only_AD.1770"; gene_name "CUFF.283"; flanks "61761558-,61761038^"; structure "1^,2^"; splice_chain "61763337^,61761558^";
chr2	juncbase	jcn_only_AD	61764697	61761038	.	-	.	gene_id "jcn_only_AD.1771"; transcript_id "jcn_only_AD.1771"; gene_name "CUFF.283"; flanks "61764697-,61761038^"; structure "1^,2^"; splice_chain "61764697^,61763337^";
chr2	juncbase	jcn_only_AD	61764154	61761038	.	-	.	gene_id "jcn_only_AD.1772"; transcript_id "jcn_only_AD.1772"; gene_name "CUFF.283"; flanks "61764154-,61761038^"; structure "1^,2^"; splice_chain "61764154^,61763337^";
chr2	juncbase	jcn_only_AD	61765627	61761038	.	-	.	gene_id "jcn_only_AD.1773"; transcript_id "jcn_only_AD.1773"; gene_name "CUFF.283"; flanks "61765627-,61761038^"; structure "1^,2^"; splice_chain "61765627^,61763337^";
chr2	juncbase	jcn_only_AD	61761693	61761038	.	-	.	gene_id "jcn_only_AD.1774"; transcript_id "jcn_only_AD.1774"; gene_name "CUFF.283"; flanks "61761693-,61761038^"; structure "1^,2^"; splice_chain "61763337^,61761693^";
chr2	juncbase	jcn_only_AD	175740516	175711685	.	-	.	gene_id "jcn_only_AD.1775"; transcript_id "jcn_only_AD.1775"; gene_name ""; flanks "175740516-,175711685^"; structure "1^,2^"; splice_chain "175740516^,175712041^";
chr2	juncbase	jcn_only_AD	175712447	175711685	.	-	.	gene_id "jcn_only_AD.1776"; transcript_id "jcn_only_AD.1776"; gene_name ""; flanks "175712447-,175711685^"; structure "1^,2^"; splice_chain "175712447^,175712041^";
chr2	juncbase	alternative_donor	220094680	220094950	.	+	.	gene_id "alternative_donor.1504"; transcript_id "alternative_donor.1504"; gene_name "CUFF.409"; flanks "220094680-,220094950^"; structure "1^,2^"; splice_chain "220094622^,220094680^";
chr2	juncbase	alternative_donor	220094702	220094950	.	+	.	gene_id "alternative_donor.1505"; transcript_id "alternative_donor.1505"; gene_name "CUFF.409"; flanks "220094702-,220094950^"; structure "1^,2^"; splice_chain "220094622^,220094702^";
chr2	juncbase	intron_retention	86850939	86849950	.	-	.	gene_id "intron_retention.1099"; transcript_id "intron_retention.1099"; gene_name "CUFF.309"; flanks "86850939-,86849950^"; structure "0,1^2-"; splice_chain ",86850939^86849950-";
chr2	juncbase	intron_retention	242608100	242610141	.	+	.	gene_id "intron_retention.1100"; transcript_id "intron_retention.1100"; gene_name "CUFF.422"; flanks "242608100-,242610141^"; structure "0,1^2-"; splice_chain ",242608100^242610141-";
chr2	juncbase	alternative_donor	3453248	3461392	.	+	.	gene_id "alternative_donor.1506"; transcript_id "alternative_donor.1506"; gene_name "CUFF.198"; flanks "3453248-,3461392^"; structure "1^,2^"; splice_chain "3447662^,3453248^";
chr2	juncbase	alternative_donor	3461000	3461392	.	+	.	gene_id "alternative_donor.1507"; transcript_id "alternative_donor.1507"; gene_name "CUFF.198"; flanks "3461000-,3461392^"; structure "1^,2^"; splice_chain "3447662^,3461000^";
chr2	juncbase	alternative_acceptor	61761038	61764697	.	-	.	gene_id "alternative_acceptor.1059"; transcript_id "alternative_acceptor.1059"; gene_name "CUFF.283"; flanks "61761038-,61764697^"; structure "1-,2-"; splice_chain "61761813-,61761038-";
chr2	juncbase	jcn_only_AA	25174423	25179912	.	-	.	gene_id "jcn_only_AA.1391"; transcript_id "jcn_only_AA.1391"; gene_name "CUFF.222"; flanks "25174423-,25179912^"; structure "1-,2-"; splice_chain "25176504-,25174423-";
chr2	juncbase	intron_retention	61712903	61711240	.	-	.	gene_id "intron_retention.1101"; transcript_id "intron_retention.1101"; gene_name "CUFF.283"; flanks "61712903-,61711240^"; structure "0,1^2-"; splice_chain ",61712903^61711240-";
chr2	juncbase	jcn_only_AA	4020664	4021135	.	-	.	gene_id "jcn_only_AA.1392"; transcript_id "jcn_only_AA.1392"; gene_name "CUFF.202"; flanks "4020664-,4021135^"; structure "1-,2-"; splice_chain "4020664-,4015878-";
chr2	juncbase	jcn_only_AA	4009393	4021135	.	-	.	gene_id "jcn_only_AA.1393"; transcript_id "jcn_only_AA.1393"; gene_name "CUFF.202"; flanks "4009393-,4021135^"; structure "1-,2-"; splice_chain "4015878-,4009393-";
chr2	juncbase	jcn_only_AA	4009484	4021135	.	-	.	gene_id "jcn_only_AA.1394"; transcript_id "jcn_only_AA.1394"; gene_name "CUFF.202"; flanks "4009484-,4021135^"; structure "1-,2-"; splice_chain "4015878-,4009484-";
chr2	juncbase	jcn_only_AA	4020692	4021135	.	-	.	gene_id "jcn_only_AA.1395"; transcript_id "jcn_only_AA.1395"; gene_name "CUFF.202"; flanks "4020692-,4021135^"; structure "1-,2-"; splice_chain "4020692-,4015878-";
chr2	juncbase	intron_retention	242598602	242606060	.	+	.	gene_id "intron_retention.1102"; transcript_id "intron_retention.1102"; gene_name "CUFF.422"; flanks "242598602-,242606060^"; structure "0,1^2-"; splice_chain ",242598602^242606060-";
chr2	juncbase	intron_retention	242436715	242435949	.	-	.	gene_id "intron_retention.1103"; transcript_id "intron_retention.1103"; gene_name "CUFF.421"; flanks "242436715-,242435949^"; structure "0,1^2-"; splice_chain ",242436715^242435949-";
chr2	juncbase	alternative_acceptor	101609989	101612258	.	+	.	gene_id "alternative_acceptor.1060"; transcript_id "alternative_acceptor.1060"; gene_name ""; flanks "101609989-,101612258^"; structure "1-,2-"; splice_chain "101611862-,101612258-";
chr2	juncbase	alternative_donor	242436597	242435949	.	-	.	gene_id "alternative_donor.1508"; transcript_id "alternative_donor.1508"; gene_name "CUFF.421"; flanks "242436597-,242435949^"; structure "1^,2^"; splice_chain "242436715^,242436597^";
chr2	juncbase	alternative_donor	242437031	242435949	.	-	.	gene_id "alternative_donor.1509"; transcript_id "alternative_donor.1509"; gene_name "CUFF.421"; flanks "242437031-,242435949^"; structure "1^,2^"; splice_chain "242437031^,242436715^";
chr2	juncbase	jcn_only_AD	207630471	207631368	.	+	.	gene_id "jcn_only_AD.1777"; transcript_id "jcn_only_AD.1777"; gene_name "CUFF.394"; flanks "207630471-,207631368^"; structure "1^,2^"; splice_chain "207630471^,207630486^";
chr2	juncbase	jcn_only_AD	207630378	207631368	.	+	.	gene_id "jcn_only_AD.1778"; transcript_id "jcn_only_AD.1778"; gene_name "CUFF.394"; flanks "207630378-,207631368^"; structure "1^,2^"; splice_chain "207630378^,207630486^";
chr2	juncbase	jcn_only_AD	207630242	207631368	.	+	.	gene_id "jcn_only_AD.1779"; transcript_id "jcn_only_AD.1779"; gene_name "CUFF.394"; flanks "207630242-,207631368^"; structure "1^,2^"; splice_chain "207630242^,207630486^";
chr2	juncbase	alternative_donor	1158975	1161234	.	+	.	gene_id "alternative_donor.1510"; transcript_id "alternative_donor.1510"; gene_name "CUFF.195"; flanks "1158975-,1161234^"; structure "1^,2^"; splice_chain "1133495^,1158975^";
chr2	juncbase	alternative_donor	1159411	1161234	.	+	.	gene_id "alternative_donor.1511"; transcript_id "alternative_donor.1511"; gene_name "CUFF.195"; flanks "1159411-,1161234^"; structure "1^,2^"; splice_chain "1133495^,1159411^";
chr2	juncbase	alternative_donor	288553	287892	.	-	.	gene_id "alternative_donor.1512"; transcript_id "alternative_donor.1512"; gene_name ""; flanks "288553-,287892^"; structure "1^,2^"; splice_chain "288553^,288013^";
chr2	juncbase	intron_retention	99232809	99234631	.	+	.	gene_id "intron_retention.1104"; transcript_id "intron_retention.1104"; gene_name ""; flanks "99232809-,99234631^"; structure "0,1^2-"; splice_chain ",99232809^99234631-";
chr2	juncbase	alternative_acceptor	3447662	3461392	.	+	.	gene_id "alternative_acceptor.1061"; transcript_id "alternative_acceptor.1061"; gene_name "CUFF.198"; flanks "3447662-,3461392^"; structure "1-,2-"; splice_chain "3460921-,3461392-";
chr2	juncbase	alternative_acceptor	109092306	109098166	.	+	.	gene_id "alternative_acceptor.1062"; transcript_id "alternative_acceptor.1062"; gene_name "CUFF.333"; flanks "109092306-,109098166^"; structure "1-,2-"; splice_chain "109098153-,109098166-";
chr2	juncbase	jcn_only_AA	175816930	175869934	.	-	.	gene_id "jcn_only_AA.1396"; transcript_id "jcn_only_AA.1396"; gene_name ""; flanks "175816930-,175869934^"; structure "1-,2-"; splice_chain "175869808-,175816930-";
chr2	juncbase	intron_retention	232258621	232259492	.	+	.	gene_id "intron_retention.1105"; transcript_id "intron_retention.1105"; gene_name "CUFF.413"; flanks "232258621-,232259492^"; structure "0,1^2-"; splice_chain ",232258621^232259492-";
chr2	juncbase	intron_retention	220095127	220096650	.	+	.	gene_id "intron_retention.1106"; transcript_id "intron_retention.1106"; gene_name ""; flanks "220095127-,220096650^"; structure "0,1^2-"; splice_chain ",220095127^220096650-";
chr2	juncbase	alternative_donor	109102363	109102891	.	+	.	gene_id "alternative_donor.1513"; transcript_id "alternative_donor.1513"; gene_name "CUFF.333"; flanks "109102363-,109102891^"; structure "1^,2^"; splice_chain "109102363^,109102364^";
chr2	juncbase	jcn_only_AD	68384506	68374699	.	-	.	gene_id "jcn_only_AD.1780"; transcript_id "jcn_only_AD.1780"; gene_name "CUFF.287"; flanks "68384506-,68374699^"; structure "1^,2^"; splice_chain "68384506^,68384393^";
chr2	juncbase	jcn_only_AD	68384059	68374699	.	-	.	gene_id "jcn_only_AD.1781"; transcript_id "jcn_only_AD.1781"; gene_name "CUFF.287"; flanks "68384059-,68374699^"; structure "1^,2^"; splice_chain "68384393^,68384059^";
chr2	juncbase	jcn_only_AA	153476232	153481952	.	+	.	gene_id "jcn_only_AA.1397"; transcript_id "jcn_only_AA.1397"; gene_name "CUFF.347"; flanks "153476232-,153481952^"; structure "1-,2-"; splice_chain "153479051-,153481952-";
chr2	juncbase	intron_retention	27669127	27668855	.	-	.	gene_id "intron_retention.1107"; transcript_id "intron_retention.1107"; gene_name "CUFF.226"; flanks "27669127-,27668855^"; structure "0,1^2-"; splice_chain ",27669127^27668855-";
chr2	juncbase	jcn_only_AA	219457430	219458251	.	+	.	gene_id "jcn_only_AA.1398"; transcript_id "jcn_only_AA.1398"; gene_name "CUFF.403"; flanks "219457430-,219458251^"; structure "1-,2-"; splice_chain "219458251-,219458831-";
chr2	juncbase	jcn_only_AA	219457430	219458892	.	+	.	gene_id "jcn_only_AA.1399"; transcript_id "jcn_only_AA.1399"; gene_name "CUFF.403"; flanks "219457430-,219458892^"; structure "1-,2-"; splice_chain "219458831-,219458892-";
chr2	juncbase	jcn_only_AD	242577175	242590425	.	+	.	gene_id "jcn_only_AD.1782"; transcript_id "jcn_only_AD.1782"; gene_name "CUFF.422"; flanks "242577175-,242590425^"; structure "1^,2^"; splice_chain "242577175^,242577785^";
chr2	juncbase	jcn_only_AD	242577139	242590425	.	+	.	gene_id "jcn_only_AD.1783"; transcript_id "jcn_only_AD.1783"; gene_name "CUFF.422"; flanks "242577139-,242590425^"; structure "1^,2^"; splice_chain "242577139^,242577785^";
chr2	juncbase	alternative_donor	171034799	171055718	.	+	.	gene_id "alternative_donor.1514"; transcript_id "alternative_donor.1514"; gene_name "CUFF.360"; flanks "171034799-,171055718^"; structure "1^,2^"; splice_chain "171034799^,171036691^";
chr2	juncbase	jcn_only_AD	68384393	68374699	.	-	.	gene_id "jcn_only_AD.1784"; transcript_id "jcn_only_AD.1784"; gene_name "CUFF.287"; flanks "68384393-,68374699^"; structure "1^,2^"; splice_chain "68384506^,68384393^";
chr2	juncbase	jcn_only_AD	68384059	68374699	.	-	.	gene_id "jcn_only_AD.1785"; transcript_id "jcn_only_AD.1785"; gene_name "CUFF.287"; flanks "68384059-,68374699^"; structure "1^,2^"; splice_chain "68384506^,68384059^";
chr2	juncbase	alternative_donor	1158975	1161234	.	+	.	gene_id "alternative_donor.1515"; transcript_id "alternative_donor.1515"; gene_name "CUFF.195"; flanks "1158975-,1161234^"; structure "1^,2^"; splice_chain "1158975^,1159411^";
chr2	juncbase	alternative_donor	1133495	1161234	.	+	.	gene_id "alternative_donor.1516"; transcript_id "alternative_donor.1516"; gene_name "CUFF.195"; flanks "1133495-,1161234^"; structure "1^,2^"; splice_chain "1133495^,1159411^";
chr2	juncbase	alternative_donor	207989068	207953305	.	-	.	gene_id "alternative_donor.1517"; transcript_id "alternative_donor.1517"; gene_name "CUFF.396"; flanks "207989068-,207953305^"; structure "1^,2^"; splice_chain "207989068^,207988498^";
chr2	juncbase	alternative_donor	207988700	207953305	.	-	.	gene_id "alternative_donor.1518"; transcript_id "alternative_donor.1518"; gene_name "CUFF.396"; flanks "207988700-,207953305^"; structure "1^,2^"; splice_chain "207988700^,207988498^";
chr2	juncbase	alternative_donor	208031481	208030430	.	-	.	gene_id "alternative_donor.1519"; transcript_id "alternative_donor.1519"; gene_name "CUFF.396"; flanks "208031481-,208030430^"; structure "1^,2^"; splice_chain "208031481^,208030637^";
chr2	juncbase	alternative_donor	208031718	208030430	.	-	.	gene_id "alternative_donor.1520"; transcript_id "alternative_donor.1520"; gene_name "CUFF.396"; flanks "208031718-,208030430^"; structure "1^,2^"; splice_chain "208031718^,208030637^";
chr2	juncbase	alternative_donor	61763845	61761038	.	-	.	gene_id "alternative_donor.1521"; transcript_id "alternative_donor.1521"; gene_name ""; flanks "61763845-,61761038^"; structure "1^,2^"; splice_chain "61764697^,61763845^";
chr2	juncbase	alternative_donor	61763337	61761038	.	-	.	gene_id "alternative_donor.1522"; transcript_id "alternative_donor.1522"; gene_name ""; flanks "61763337-,61761038^"; structure "1^,2^"; splice_chain "61764697^,61763337^";
chr2	juncbase	alternative_donor	61761558	61761038	.	-	.	gene_id "alternative_donor.1523"; transcript_id "alternative_donor.1523"; gene_name ""; flanks "61761558-,61761038^"; structure "1^,2^"; splice_chain "61764697^,61761558^";
chr2	juncbase	alternative_donor	61764154	61761038	.	-	.	gene_id "alternative_donor.1524"; transcript_id "alternative_donor.1524"; gene_name ""; flanks "61764154-,61761038^"; structure "1^,2^"; splice_chain "61764697^,61764154^";
chr2	juncbase	alternative_donor	61765627	61761038	.	-	.	gene_id "alternative_donor.1525"; transcript_id "alternative_donor.1525"; gene_name ""; flanks "61765627-,61761038^"; structure "1^,2^"; splice_chain "61765627^,61764697^";
chr2	juncbase	alternative_donor	61761693	61761038	.	-	.	gene_id "alternative_donor.1526"; transcript_id "alternative_donor.1526"; gene_name ""; flanks "61761693-,61761038^"; structure "1^,2^"; splice_chain "61764697^,61761693^";
chr2	juncbase	jcn_only_AD	177053147	177043826	.	-	.	gene_id "jcn_only_AD.1786"; transcript_id "jcn_only_AD.1786"; gene_name "CUFF.375"; flanks "177053147-,177043826^"; structure "1^,2^"; splice_chain "177053147^,177052793^";
chr2	juncbase	jcn_only_AD	242577785	242590425	.	+	.	gene_id "jcn_only_AD.1787"; transcript_id "jcn_only_AD.1787"; gene_name "CUFF.422"; flanks "242577785-,242590425^"; structure "1^,2^"; splice_chain "242577175^,242577785^";
chr2	juncbase	jcn_only_AD	242577139	242590425	.	+	.	gene_id "jcn_only_AD.1788"; transcript_id "jcn_only_AD.1788"; gene_name "CUFF.422"; flanks "242577139-,242590425^"; structure "1^,2^"; splice_chain "242577139^,242577175^";
chr2	juncbase	jcn_only_AD	171400498	171508138	.	+	.	gene_id "jcn_only_AD.1789"; transcript_id "jcn_only_AD.1789"; gene_name ""; flanks "171400498-,171508138^"; structure "1^,2^"; splice_chain "171400498^,171503449^";
chr2	juncbase	jcn_only_AA	33477911	33482435	.	+	.	gene_id "jcn_only_AA.1400"; transcript_id "jcn_only_AA.1400"; gene_name "CUFF.249"; flanks "33477911-,33482435^"; structure "1-,2-"; splice_chain "33482435-,33482510-";
chr2	juncbase	jcn_only_AA	33477911	33482351	.	+	.	gene_id "jcn_only_AA.1401"; transcript_id "jcn_only_AA.1401"; gene_name "CUFF.249"; flanks "33477911-,33482351^"; structure "1-,2-"; splice_chain "33482351-,33482510-";
chr2	juncbase	cassette	204354307	204335036	.	-	.	gene_id "cassette.825"; transcript_id "cassette.825"; gene_name "CUFF.392"; flanks "204354307-,204335036^"; structure "0,1-2^"; splice_chain ",204341879-204341799^";
chr2	juncbase	cassette	204354307	204326648	.	-	.	gene_id "cassette.826"; transcript_id "cassette.826"; gene_name "CUFF.392"; flanks "204354307-,204326648^"; structure "0,1-2^"; splice_chain ",204341879-204341799^";
chr2	juncbase	alternative_donor	25179912	25174423	.	-	.	gene_id "alternative_donor.1527"; transcript_id "alternative_donor.1527"; gene_name "CUFF.193,CUFF.222"; flanks "25179912-,25174423^"; structure "1^,2^"; splice_chain "25179912^,25176419^";
chr2	juncbase	cassette	242594062	242598523	.	+	.	gene_id "cassette.827"; transcript_id "cassette.827"; gene_name "CUFF.422"; flanks "242594062-,242598523^"; structure "0,1-2^"; splice_chain ",242594686-242594758^";
chr2	juncbase	cassette	242594062	242606060	.	+	.	gene_id "cassette.828"; transcript_id "cassette.828"; gene_name "CUFF.422"; flanks "242594062-,242606060^"; structure "0,1-2^"; splice_chain ",242594686-242594758^";
chr2	juncbase	alternative_donor	73228658	73227616	.	-	.	gene_id "alternative_donor.1528"; transcript_id "alternative_donor.1528"; gene_name "CUFF.297"; flanks "73228658-,73227616^"; structure "1^,2^"; splice_chain "73228658^,73228654^";
chr2	juncbase	intron_retention	220100817	220101044	.	+	.	gene_id "intron_retention.1108"; transcript_id "intron_retention.1108"; gene_name "CUFF.409"; flanks "220100817-,220101044^"; structure "0,1^2-"; splice_chain ",220100817^220101044-";
chr2	juncbase	jcn_only_AA	61761038	61765627	.	-	.	gene_id "jcn_only_AA.1402"; transcript_id "jcn_only_AA.1402"; gene_name ""; flanks "61761038-,61765627^"; structure "1-,2-"; splice_chain "61764722-,61761038-";
chr2	juncbase	alternative_acceptor	219222457	219222760	.	+	.	gene_id "alternative_acceptor.1063"; transcript_id "alternative_acceptor.1063"; gene_name "CUFF.402"; flanks "219222457-,219222760^"; structure "1-,2-"; splice_chain "219222709-,219222760-";
chr2	juncbase	cassette	160569172	160585520	.	+	.	gene_id "cassette.829"; transcript_id "cassette.829"; gene_name "CUFF.350"; flanks "160569172-,160585520^"; structure "0,1-2^"; splice_chain ",160572192-160572277^";
chr2	juncbase	cassette	23599655	23598555	.	-	.	gene_id "cassette.830"; transcript_id "cassette.830"; gene_name "CUFF.220"; flanks "23599655-,23598555^"; structure "0,1-2^"; splice_chain ",23599200-23599109^";
chr2	juncbase	jcn_only_AA	27703993	27706156	.	-	.	gene_id "jcn_only_AA.1403"; transcript_id "jcn_only_AA.1403"; gene_name "CUFF.226"; flanks "27703993-,27706156^"; structure "1-,2-"; splice_chain "27704127-,27703993-";
chr2	juncbase	intron_retention	27700084	27699593	.	-	.	gene_id "intron_retention.1109"; transcript_id "intron_retention.1109"; gene_name "CUFF.226"; flanks "27700084-,27699593^"; structure "0,1^2-"; splice_chain ",27700084^27699593-";
chr2	juncbase	jcn_only_AD	101609989	101612258	.	+	.	gene_id "jcn_only_AD.1790"; transcript_id "jcn_only_AD.1790"; gene_name ""; flanks "101609989-,101612258^"; structure "1^,2^"; splice_chain "101609989^,101611042^";
chr2	juncbase	intron_retention	220097405	220097801	.	+	.	gene_id "intron_retention.1110"; transcript_id "intron_retention.1110"; gene_name "CUFF.409"; flanks "220097405-,220097801^"; structure "0,1^2-"; splice_chain ",220097405^220097801-";
chr2	juncbase	intron_retention	242590526	242590679	.	+	.	gene_id "intron_retention.1111"; transcript_id "intron_retention.1111"; gene_name ""; flanks "242590526-,242590679^"; structure "0,1^2-"; splice_chain ",242590526^242590679-";
chr2	juncbase	alternative_acceptor	191362445	191364741	.	+	.	gene_id "alternative_acceptor.1064"; transcript_id "alternative_acceptor.1064"; gene_name "CUFF.384,CUFF.403"; flanks "191362445-,191364741^"; structure "1-,2-"; splice_chain "191364558-,191364741-";
chr2	juncbase	jcn_only_AD	3383610	3391391	.	+	.	gene_id "jcn_only_AD.1791"; transcript_id "jcn_only_AD.1791"; gene_name "CUFF.198"; flanks "3383610-,3391391^"; structure "1^,2^"; splice_chain "3383610^,3383647^";
chr2	juncbase	alternative_donor	220094680	220094950	.	+	.	gene_id "alternative_donor.1529"; transcript_id "alternative_donor.1529"; gene_name "CUFF.409"; flanks "220094680-,220094950^"; structure "1^,2^"; splice_chain "220094680^,220094702^";
chr2	juncbase	alternative_donor	220094622	220094950	.	+	.	gene_id "alternative_donor.1530"; transcript_id "alternative_donor.1530"; gene_name "CUFF.409"; flanks "220094622-,220094950^"; structure "1^,2^"; splice_chain "220094622^,220094702^";
chr2	juncbase	jcn_only_AD	1158975	1161234	.	+	.	gene_id "jcn_only_AD.1792"; transcript_id "jcn_only_AD.1792"; gene_name "CUFF.195"; flanks "1158975-,1161234^"; structure "1^,2^"; splice_chain "1158975^,1159411^";
chr2	juncbase	jcn_only_AD	1133495	1161234	.	+	.	gene_id "jcn_only_AD.1793"; transcript_id "jcn_only_AD.1793"; gene_name "CUFF.195"; flanks "1133495-,1161234^"; structure "1^,2^"; splice_chain "1133495^,1159411^";
chr2	juncbase	intron_retention	27707094	27706804	.	-	.	gene_id "intron_retention.1112"; transcript_id "intron_retention.1112"; gene_name "CUFF.226"; flanks "27707094-,27706804^"; structure "0,1^2-"; splice_chain ",27707094^27706804-";
chr2	juncbase	alternative_acceptor	242577139	242590425	.	+	.	gene_id "alternative_acceptor.1065"; transcript_id "alternative_acceptor.1065"; gene_name "CUFF.422"; flanks "242577139-,242590425^"; structure "1-,2-"; splice_chain "242577676-,242590425-";
chr2	juncbase	alternative_donor	191302287	191334484	.	+	.	gene_id "alternative_donor.1531"; transcript_id "alternative_donor.1531"; gene_name "CUFF.384"; flanks "191302287-,191334484^"; structure "1^,2^"; splice_chain "191302287^,191307731^";
chr2	juncbase	alternative_donor	191334375	191334484	.	+	.	gene_id "alternative_donor.1532"; transcript_id "alternative_donor.1532"; gene_name "CUFF.384"; flanks "191334375-,191334484^"; structure "1^,2^"; splice_chain "191307731^,191334375^";
chr2	juncbase	cassette	33505225	33525518	.	+	.	gene_id "cassette.831"; transcript_id "cassette.831"; gene_name "CUFF.249"; flanks "33505225-,33525518^"; structure "0,1-2^"; splice_chain ",33518227-33518349^";
chr2	juncbase	intron_retention	86400773	86398468	.	-	.	gene_id "intron_retention.1113"; transcript_id "intron_retention.1113"; gene_name ""; flanks "86400773-,86398468^"; structure "0,1^2-"; splice_chain ",86400773^86398468-";
chr2	juncbase	jcn_only_AA	86397964	86398331	.	-	.	gene_id "jcn_only_AA.1404"; transcript_id "jcn_only_AA.1404"; gene_name "CUFF.307"; flanks "86397964-,86398331^"; structure "1-,2-"; splice_chain "86397967-,86397964-";
chr2	juncbase	intron_retention	263984	253115	.	-	.	gene_id "intron_retention.1114"; transcript_id "intron_retention.1114"; gene_name ""; flanks "263984-,253115^"; structure "0,1^2-"; splice_chain ",263984^253115-";
chr2	juncbase	jcn_only_AD	207630471	207631368	.	+	.	gene_id "jcn_only_AD.1794"; transcript_id "jcn_only_AD.1794"; gene_name "CUFF.394"; flanks "207630471-,207631368^"; structure "1^,2^"; splice_chain "207630378^,207630471^";
chr2	juncbase	jcn_only_AD	207630242	207631368	.	+	.	gene_id "jcn_only_AD.1795"; transcript_id "jcn_only_AD.1795"; gene_name "CUFF.394"; flanks "207630242-,207631368^"; structure "1^,2^"; splice_chain "207630242^,207630378^";
chr2	juncbase	jcn_only_AD	207630486	207631368	.	+	.	gene_id "jcn_only_AD.1796"; transcript_id "jcn_only_AD.1796"; gene_name "CUFF.394"; flanks "207630486-,207631368^"; structure "1^,2^"; splice_chain "207630378^,207630486^";
chr2	juncbase	jcn_only_AD	61753555	61749818	.	-	.	gene_id "jcn_only_AD.1797"; transcript_id "jcn_only_AD.1797"; gene_name "CUFF.283"; flanks "61753555-,61749818^"; structure "1^,2^"; splice_chain "61753555^,61752405^";
chr2	juncbase	jcn_only_AD	61753556	61749818	.	-	.	gene_id "jcn_only_AD.1798"; transcript_id "jcn_only_AD.1798"; gene_name "CUFF.283"; flanks "61753556-,61749818^"; structure "1^,2^"; splice_chain "61753556^,61752405^";
chr2	juncbase	jcn_only_AD	207630378	207631368	.	+	.	gene_id "jcn_only_AD.1799"; transcript_id "jcn_only_AD.1799"; gene_name "CUFF.394"; flanks "207630378-,207631368^"; structure "1^,2^"; splice_chain "207630378^,207630471^";
chr2	juncbase	jcn_only_AD	207630242	207631368	.	+	.	gene_id "jcn_only_AD.1800"; transcript_id "jcn_only_AD.1800"; gene_name "CUFF.394"; flanks "207630242-,207631368^"; structure "1^,2^"; splice_chain "207630242^,207630471^";
chr2	juncbase	jcn_only_AD	207630486	207631368	.	+	.	gene_id "jcn_only_AD.1801"; transcript_id "jcn_only_AD.1801"; gene_name "CUFF.394"; flanks "207630486-,207631368^"; structure "1^,2^"; splice_chain "207630471^,207630486^";
chr2	juncbase	cassette	153497428	153504310	.	+	.	gene_id "cassette.832"; transcript_id "cassette.832"; gene_name "CUFF.347"; flanks "153497428-,153504310^"; structure "0,1-2^"; splice_chain ",153499933-153500058^";
chr2	juncbase	jcn_only_AA	232026223	232029914	.	+	.	gene_id "jcn_only_AA.1405"; transcript_id "jcn_only_AA.1405"; gene_name "CUFF.412"; flanks "232026223-,232029914^"; structure "1-,2-"; splice_chain "232028349-,232029914-";
chr2	juncbase	cassette	101565942	101580520	.	+	.	gene_id "cassette.833"; transcript_id "cassette.833"; gene_name "CUFF.323"; flanks "101565942-,101580520^"; structure "0,1-2^"; splice_chain ",101579217-101579295^";
chr2	juncbase	alternative_donor	3464107	3469368	.	+	.	gene_id "alternative_donor.1533"; transcript_id "alternative_donor.1533"; gene_name "CUFF.198"; flanks "3464107-,3469368^"; structure "1^,2^"; splice_chain "3464107^,3466842^";
chr2	juncbase	jcn_only_AD	16535568	16573521	.	+	.	gene_id "jcn_only_AD.1802"; transcript_id "jcn_only_AD.1802"; gene_name "CUFF.214"; flanks "16535568-,16573521^"; structure "1^,2^"; splice_chain "16535568^,16536535^";
chr2	juncbase	jcn_only_AD	109085540	109086107	.	+	.	gene_id "jcn_only_AD.1803"; transcript_id "jcn_only_AD.1803"; gene_name "CUFF.333"; flanks "109085540-,109086107^"; structure "1^,2^"; splice_chain "109085540^,109085788^";
chr2	juncbase	jcn_only_AD	242577175	242590425	.	+	.	gene_id "jcn_only_AD.1804"; transcript_id "jcn_only_AD.1804"; gene_name "CUFF.422"; flanks "242577175-,242590425^"; structure "1^,2^"; splice_chain "242577139^,242577175^";
chr2	juncbase	jcn_only_AD	242577785	242590425	.	+	.	gene_id "jcn_only_AD.1805"; transcript_id "jcn_only_AD.1805"; gene_name "CUFF.422"; flanks "242577785-,242590425^"; structure "1^,2^"; splice_chain "242577139^,242577785^";
chr2	juncbase	intron_retention	79365498	79365202	.	-	.	gene_id "intron_retention.1115"; transcript_id "intron_retention.1115"; gene_name "CUFF.304"; flanks "79365498-,79365202^"; structure "0,1^2-"; splice_chain ",79365498^79365202-";
chr2	juncbase	alternative_donor	88894987	88892923	.	-	.	gene_id "alternative_donor.1534"; transcript_id "alternative_donor.1534"; gene_name "CUFF.312"; flanks "88894987-,88892923^"; structure "1^,2^"; splice_chain "88894987^,88893431^";
chr2	juncbase	cassette	220094622	220096650	.	+	.	gene_id "cassette.834"; transcript_id "cassette.834"; gene_name "CUFF.409"; flanks "220094622-,220096650^"; structure "0,1-2^"; splice_chain ",220094950-220095127^";
chr2	juncbase	alternative_donor	109066145	109067484	.	+	.	gene_id "alternative_donor.1535"; transcript_id "alternative_donor.1535"; gene_name "CUFF.333"; flanks "109066145-,109067484^"; structure "1^,2^"; splice_chain "109066145^,109066450^";
chr2	juncbase	intron_retention	235404656	235404480	.	-	.	gene_id "intron_retention.1116"; transcript_id "intron_retention.1116"; gene_name ""; flanks "235404656-,235404480^"; structure "0,1^2-"; splice_chain ",235404656^235404480-";
chr2	juncbase	jcn_only_AA	4020664	4021135	.	-	.	gene_id "jcn_only_AA.1406"; transcript_id "jcn_only_AA.1406"; gene_name "CUFF.202"; flanks "4020664-,4021135^"; structure "1-,2-"; splice_chain "4020692-,4020664-";
chr2	juncbase	jcn_only_AA	4009393	4021135	.	-	.	gene_id "jcn_only_AA.1407"; transcript_id "jcn_only_AA.1407"; gene_name "CUFF.202"; flanks "4009393-,4021135^"; structure "1-,2-"; splice_chain "4020692-,4009393-";
chr2	juncbase	jcn_only_AA	4015878	4021135	.	-	.	gene_id "jcn_only_AA.1408"; transcript_id "jcn_only_AA.1408"; gene_name "CUFF.202"; flanks "4015878-,4021135^"; structure "1-,2-"; splice_chain "4020692-,4015878-";
chr2	juncbase	jcn_only_AA	4009484	4021135	.	-	.	gene_id "jcn_only_AA.1409"; transcript_id "jcn_only_AA.1409"; gene_name "CUFF.202"; flanks "4009484-,4021135^"; structure "1-,2-"; splice_chain "4020692-,4009484-";
chr2	juncbase	jcn_only_AA	101609989	101612258	.	+	.	gene_id "jcn_only_AA.1410"; transcript_id "jcn_only_AA.1410"; gene_name ""; flanks "101609989-,101612258^"; structure "1-,2-"; splice_chain "101611862-,101612258-";
chr2	juncbase	alternative_donor	61753556	61749818	.	-	.	gene_id "alternative_donor.1536"; transcript_id "alternative_donor.1536"; gene_name ""; flanks "61753556-,61749818^"; structure "1^,2^"; splice_chain "61753556^,61753555^";
chr2	juncbase	alternative_donor	61752405	61749818	.	-	.	gene_id "alternative_donor.1537"; transcript_id "alternative_donor.1537"; gene_name ""; flanks "61752405-,61749818^"; structure "1^,2^"; splice_chain "61753555^,61752405^";
chr2	juncbase	intron_retention	262631	253115	.	-	.	gene_id "intron_retention.1117"; transcript_id "intron_retention.1117"; gene_name ""; flanks "262631-,253115^"; structure "0,1^2-"; splice_chain ",262631^253115-";
chr2	juncbase	jcn_only_AD	242436715	242435949	.	-	.	gene_id "jcn_only_AD.1806"; transcript_id "jcn_only_AD.1806"; gene_name ""; flanks "242436715-,242435949^"; structure "1^,2^"; splice_chain "242437031^,242436715^";
chr2	juncbase	jcn_only_AD	242436597	242435949	.	-	.	gene_id "jcn_only_AD.1807"; transcript_id "jcn_only_AD.1807"; gene_name ""; flanks "242436597-,242435949^"; structure "1^,2^"; splice_chain "242437031^,242436597^";
chr2	juncbase	jcn_only_AD	208031481	208030430	.	-	.	gene_id "jcn_only_AD.1808"; transcript_id "jcn_only_AD.1808"; gene_name "CUFF.396"; flanks "208031481-,208030430^"; structure "1^,2^"; splice_chain "208031481^,208030637^";
chr2	juncbase	jcn_only_AD	208031718	208030430	.	-	.	gene_id "jcn_only_AD.1809"; transcript_id "jcn_only_AD.1809"; gene_name "CUFF.396"; flanks "208031718-,208030430^"; structure "1^,2^"; splice_chain "208031718^,208030637^";
chr2	juncbase	intron_retention	232258621	232259366	.	+	.	gene_id "intron_retention.1118"; transcript_id "intron_retention.1118"; gene_name "CUFF.413"; flanks "232258621-,232259366^"; structure "0,1^2-"; splice_chain ",232258621^232259366-";
chr2	juncbase	cassette	33540336	33572434	.	+	.	gene_id "cassette.835"; transcript_id "cassette.835"; gene_name "CUFF.249"; flanks "33540336-,33572434^"; structure "0,1-2^"; splice_chain ",33567905-33568030^";
chr2	juncbase	jcn_only_AA	174072386	174136239	.	-	.	gene_id "jcn_only_AA.1411"; transcript_id "jcn_only_AA.1411"; gene_name "CUFF.364"; flanks "174072386-,174136239^"; structure "1-,2-"; splice_chain "174080564-,174072386-";
chr2	juncbase	intron_retention	79363916	79363202	.	-	.	gene_id "intron_retention.1119"; transcript_id "intron_retention.1119"; gene_name ""; flanks "79363916-,79363202^"; structure "0,1^2-"; splice_chain ",79363916^79363202-";
chr2	juncbase	cassette	46842076	46839483	.	-	.	gene_id "cassette.836"; transcript_id "cassette.836"; gene_name "CUFF.277"; flanks "46842076-,46839483^"; structure "0,1-2^"; splice_chain ",46840924-46840833^";
chr2	juncbase	alternative_donor	61763845	61761038	.	-	.	gene_id "alternative_donor.1538"; transcript_id "alternative_donor.1538"; gene_name "CUFF.283"; flanks "61763845-,61761038^"; structure "1^,2^"; splice_chain "61763845^,61763337^";
chr2	juncbase	alternative_donor	61761558	61761038	.	-	.	gene_id "alternative_donor.1539"; transcript_id "alternative_donor.1539"; gene_name "CUFF.283"; flanks "61761558-,61761038^"; structure "1^,2^"; splice_chain "61763337^,61761558^";
chr2	juncbase	alternative_donor	61764697	61761038	.	-	.	gene_id "alternative_donor.1540"; transcript_id "alternative_donor.1540"; gene_name "CUFF.283"; flanks "61764697-,61761038^"; structure "1^,2^"; splice_chain "61764697^,61763337^";
chr2	juncbase	alternative_donor	61764154	61761038	.	-	.	gene_id "alternative_donor.1541"; transcript_id "alternative_donor.1541"; gene_name "CUFF.283"; flanks "61764154-,61761038^"; structure "1^,2^"; splice_chain "61764154^,61763337^";
chr2	juncbase	alternative_donor	61765627	61761038	.	-	.	gene_id "alternative_donor.1542"; transcript_id "alternative_donor.1542"; gene_name "CUFF.283"; flanks "61765627-,61761038^"; structure "1^,2^"; splice_chain "61765627^,61763337^";
chr2	juncbase	alternative_donor	61761693	61761038	.	-	.	gene_id "alternative_donor.1543"; transcript_id "alternative_donor.1543"; gene_name "CUFF.283"; flanks "61761693-,61761038^"; structure "1^,2^"; splice_chain "61763337^,61761693^";
chr2	juncbase	jcn_only_AD	219449444	219452309	.	+	.	gene_id "jcn_only_AD.1810"; transcript_id "jcn_only_AD.1810"; gene_name "CUFF.403"; flanks "219449444-,219452309^"; structure "1^,2^"; splice_chain "219449444^,219452123^";
chr2	juncbase	alternative_donor	16573594	16613773	.	+	.	gene_id "alternative_donor.1544"; transcript_id "alternative_donor.1544"; gene_name "CUFF.214"; flanks "16573594-,16613773^"; structure "1^,2^"; splice_chain "16573594^,16613075^";
chr2	juncbase	alternative_acceptor	680151	696541	.	+	.	gene_id "alternative_acceptor.1066"; transcript_id "alternative_acceptor.1066"; gene_name ""; flanks "680151-,696541^"; structure "1-,2-"; splice_chain "681256-,696541-";
chr2	juncbase	jcn_only_AA	109092306	109098166	.	+	.	gene_id "jcn_only_AA.1412"; transcript_id "jcn_only_AA.1412"; gene_name "CUFF.333"; flanks "109092306-,109098166^"; structure "1-,2-"; splice_chain "109098153-,109098166-";
chr2	juncbase	alternative_acceptor	38231359	38244329	.	+	.	gene_id "alternative_acceptor.1067"; transcript_id "alternative_acceptor.1067"; gene_name "CUFF.269"; flanks "38231359-,38244329^"; structure "1-,2-"; splice_chain "38244329-,38294125-";
chr2	juncbase	alternative_acceptor	38231359	38239746	.	+	.	gene_id "alternative_acceptor.1068"; transcript_id "alternative_acceptor.1068"; gene_name "CUFF.269"; flanks "38231359-,38239746^"; structure "1-,2-"; splice_chain "38239746-,38294125-";
chr2	juncbase	jcn_only_AD	110883214	110881640	.	-	.	gene_id "jcn_only_AD.1811"; transcript_id "jcn_only_AD.1811"; gene_name "CUFF.336"; flanks "110883214-,110881640^"; structure "1^,2^"; splice_chain "110883214^,110882796^";
chr2	juncbase	cassette	23604092	23599797	.	-	.	gene_id "cassette.837"; transcript_id "cassette.837"; gene_name "CUFF.220"; flanks "23604092-,23599797^"; structure "0,1-2^"; splice_chain ",23603112-23602995^";
chr2	juncbase	alternative_donor	191302287	191334484	.	+	.	gene_id "alternative_donor.1545"; transcript_id "alternative_donor.1545"; gene_name "CUFF.384"; flanks "191302287-,191334484^"; structure "1^,2^"; splice_chain "191302287^,191334375^";
chr2	juncbase	alternative_donor	191307731	191334484	.	+	.	gene_id "alternative_donor.1546"; transcript_id "alternative_donor.1546"; gene_name "CUFF.384"; flanks "191307731-,191334484^"; structure "1^,2^"; splice_chain "191307731^,191334375^";
chr2	juncbase	alternative_acceptor	38231359	38244329	.	+	.	gene_id "alternative_acceptor.1069"; transcript_id "alternative_acceptor.1069"; gene_name "CUFF.269"; flanks "38231359-,38244329^"; structure "1-,2-"; splice_chain "38239746-,38244329-";
chr2	juncbase	alternative_acceptor	38231359	38294125	.	+	.	gene_id "alternative_acceptor.1070"; transcript_id "alternative_acceptor.1070"; gene_name "CUFF.269"; flanks "38231359-,38294125^"; structure "1-,2-"; splice_chain "38239746-,38294125-";
chr2	juncbase	cassette	242590750	242592927	.	+	.	gene_id "cassette.838"; transcript_id "cassette.838"; gene_name "CUFF.422"; flanks "242590750-,242592927^"; structure "0,1-2^"; splice_chain ",242592722-242592784^";
chr2	juncbase	cassette	242591389	242592927	.	+	.	gene_id "cassette.839"; transcript_id "cassette.839"; gene_name "CUFF.422"; flanks "242591389-,242592927^"; structure "0,1-2^"; splice_chain ",242592722-242592784^";
chr2	juncbase	intron_retention	99225189	99226219	.	+	.	gene_id "intron_retention.1120"; transcript_id "intron_retention.1120"; gene_name "CUFF.320"; flanks "99225189-,99226219^"; structure "0,1^2-"; splice_chain ",99225189^99226219-";
chr2	juncbase	intron_retention	286290	286203	.	-	.	gene_id "intron_retention.1121"; transcript_id "intron_retention.1121"; gene_name "CUFF.191"; flanks "286290-,286203^"; structure "0,1^2-"; splice_chain ",286290^286203-";
chr2	juncbase	intron_retention	177042743	177042549	.	-	.	gene_id "intron_retention.1122"; transcript_id "intron_retention.1122"; gene_name ""; flanks "177042743-,177042549^"; structure "0,1^2-"; splice_chain ",177042743^177042549-";
chr2	juncbase	jcn_only_AA	171400498	171508138	.	+	.	gene_id "jcn_only_AA.1413"; transcript_id "jcn_only_AA.1413"; gene_name "CUFF.412"; flanks "171400498-,171508138^"; structure "1-,2-"; splice_chain "171503419-,171508138-";
chr2	juncbase	jcn_only_AD	110922265	110920712	.	-	.	gene_id "jcn_only_AD.1812"; transcript_id "jcn_only_AD.1812"; gene_name "CUFF.307"; flanks "110922265-,110920712^"; structure "1^,2^"; splice_chain "110922265^,110922097^";
chr2	juncbase	jcn_only_AA	79364463	79365093	.	-	.	gene_id "jcn_only_AA.1414"; transcript_id "jcn_only_AA.1414"; gene_name "CUFF.304"; flanks "79364463-,79365093^"; structure "1-,2-"; splice_chain "79364468-,79364463-";
chr2	juncbase	intron_retention	219221910	219222257	.	+	.	gene_id "intron_retention.1123"; transcript_id "intron_retention.1123"; gene_name "CUFF.402"; flanks "219221910-,219222257^"; structure "0,1^2-"; splice_chain ",219221910^219222257-";
chr2	juncbase	alternative_acceptor	27703993	27706156	.	-	.	gene_id "alternative_acceptor.1071"; transcript_id "alternative_acceptor.1071"; gene_name "CUFF.226"; flanks "27703993-,27706156^"; structure "1-,2-"; splice_chain "27704127-,27703993-";
chr2	juncbase	alternative_acceptor	33477911	33482510	.	+	.	gene_id "alternative_acceptor.1072"; transcript_id "alternative_acceptor.1072"; gene_name "CUFF.249"; flanks "33477911-,33482510^"; structure "1-,2-"; splice_chain "33482435-,33482510-";
chr2	juncbase	alternative_acceptor	33477911	33482351	.	+	.	gene_id "alternative_acceptor.1073"; transcript_id "alternative_acceptor.1073"; gene_name "CUFF.249"; flanks "33477911-,33482351^"; structure "1-,2-"; splice_chain "33482351-,33482435-";
chr2	juncbase	intron_retention	38244378	38244721	.	+	.	gene_id "intron_retention.1124"; transcript_id "intron_retention.1124"; gene_name "CUFF.269"; flanks "38244378-,38244721^"; structure "0,1^2-"; splice_chain ",38244378^38244721-";
chr2	juncbase	jcn_only_AD	208013706	207989128	.	-	.	gene_id "jcn_only_AD.1813"; transcript_id "jcn_only_AD.1813"; gene_name "CUFF.396"; flanks "208013706-,207989128^"; structure "1^,2^"; splice_chain "208031864^,208013706^";
chr2	juncbase	jcn_only_AD	208030191	207989128	.	-	.	gene_id "jcn_only_AD.1814"; transcript_id "jcn_only_AD.1814"; gene_name "CUFF.396"; flanks "208030191-,207989128^"; structure "1^,2^"; splice_chain "208031864^,208030191^";
chr2	juncbase	jcn_only_AD	207998791	207989128	.	-	.	gene_id "jcn_only_AD.1815"; transcript_id "jcn_only_AD.1815"; gene_name "CUFF.396"; flanks "207998791-,207989128^"; structure "1^,2^"; splice_chain "208031864^,207998791^";
chr2	juncbase	alternative_acceptor	219457430	219458892	.	+	.	gene_id "alternative_acceptor.1074"; transcript_id "alternative_acceptor.1074"; gene_name "CUFF.403"; flanks "219457430-,219458892^"; structure "1-,2-"; splice_chain "219458251-,219458892-";
chr2	juncbase	alternative_acceptor	219457430	219458831	.	+	.	gene_id "alternative_acceptor.1075"; transcript_id "alternative_acceptor.1075"; gene_name "CUFF.403"; flanks "219457430-,219458831^"; structure "1-,2-"; splice_chain "219458251-,219458831-";
chr2	juncbase	alternative_donor	242577785	242590425	.	+	.	gene_id "alternative_donor.1547"; transcript_id "alternative_donor.1547"; gene_name "CUFF.422"; flanks "242577785-,242590425^"; structure "1^,2^"; splice_chain "242577175^,242577785^";
chr2	juncbase	alternative_donor	242577139	242590425	.	+	.	gene_id "alternative_donor.1548"; transcript_id "alternative_donor.1548"; gene_name "CUFF.422"; flanks "242577139-,242590425^"; structure "1^,2^"; splice_chain "242577139^,242577175^";
chr2	juncbase	intron_retention	242440893	242440334	.	-	.	gene_id "intron_retention.1125"; transcript_id "intron_retention.1125"; gene_name ""; flanks "242440893-,242440334^"; structure "0,1^2-"; splice_chain ",242440893^242440334-";
chr2	juncbase	jcn_only_AD	242610820	242611606	.	+	.	gene_id "jcn_only_AD.1816"; transcript_id "jcn_only_AD.1816"; gene_name "CUFF.422"; flanks "242610820-,242611606^"; structure "1^,2^"; splice_chain "242610820^,242610856^";
chr2	juncbase	jcn_only_AD	242610840	242611606	.	+	.	gene_id "jcn_only_AD.1817"; transcript_id "jcn_only_AD.1817"; gene_name "CUFF.422"; flanks "242610840-,242611606^"; structure "1^,2^"; splice_chain "242610840^,242610856^";
chr2	juncbase	cassette	242590750	242592927	.	+	.	gene_id "cassette.840"; transcript_id "cassette.840"; gene_name "CUFF.422"; flanks "242590750-,242592927^"; structure "0,1-2^"; splice_chain ",242591299-242591389^";
chr2	juncbase	cassette	242590750	242592722	.	+	.	gene_id "cassette.841"; transcript_id "cassette.841"; gene_name "CUFF.422"; flanks "242590750-,242592722^"; structure "0,1-2^"; splice_chain ",242591299-242591389^";
chr2	juncbase	jcn_only_AD	61753556	61749818	.	-	.	gene_id "jcn_only_AD.1818"; transcript_id "jcn_only_AD.1818"; gene_name ""; flanks "61753556-,61749818^"; structure "1^,2^"; splice_chain "61753556^,61753555^";
chr2	juncbase	jcn_only_AD	61752405	61749818	.	-	.	gene_id "jcn_only_AD.1819"; transcript_id "jcn_only_AD.1819"; gene_name ""; flanks "61752405-,61749818^"; structure "1^,2^"; splice_chain "61753555^,61752405^";
chr2	juncbase	cassette	86398331	86393767	.	-	.	gene_id "cassette.842"; transcript_id "cassette.842"; gene_name "CUFF.307"; flanks "86398331-,86393767^"; structure "0,1-2^"; splice_chain ",86397967-86397872^";
chr2	juncbase	cassette	109066145	109068855	.	+	.	gene_id "cassette.843"; transcript_id "cassette.843"; gene_name "CUFF.333"; flanks "109066145-,109068855^"; structure "0,1-2^"; splice_chain ",109067484-109067568^";
chr2	juncbase	alternative_donor	175869934	175816930	.	-	.	gene_id "alternative_donor.1549"; transcript_id "alternative_donor.1549"; gene_name "CUFF.397"; flanks "175869934-,175816930^"; structure "1^,2^"; splice_chain "175869934^,175869622^";
chr2	juncbase	alternative_acceptor	3482704	3488491	.	+	.	gene_id "alternative_acceptor.1076"; transcript_id "alternative_acceptor.1076"; gene_name ""; flanks "3482704-,3488491^"; structure "1-,2-"; splice_chain "3482990-,3488491-";
chr2	juncbase	jcn_only_AA	3405664	3425652	.	+	.	gene_id "jcn_only_AA.1415"; transcript_id "jcn_only_AA.1415"; gene_name "CUFF.198,CUFF.413"; flanks "3405664-,3425652^"; structure "1-,2-"; splice_chain "3425471-,3425652-";
chr2	juncbase	alternative_acceptor	175677210	175689162	.	-	.	gene_id "alternative_acceptor.1077"; transcript_id "alternative_acceptor.1077"; gene_name "CUFF.371"; flanks "175677210-,175689162^"; structure "1-,2-"; splice_chain "175686507-,175677210-";
chr2	juncbase	cassette	242447421	242440211	.	-	.	gene_id "cassette.844"; transcript_id "cassette.844"; gene_name "CUFF.421"; flanks "242447421-,242440211^"; structure "0,1-2^"; splice_chain ",242441123-242440893^";
chr2	juncbase	jcn_only_AA	109068922	109085436	.	+	.	gene_id "jcn_only_AA.1416"; transcript_id "jcn_only_AA.1416"; gene_name "CUFF.333"; flanks "109068922-,109085436^"; structure "1-,2-"; splice_chain "109079044-,109085436-";
chr2	juncbase	jcn_only_AD	69901155	69870406	.	-	.	gene_id "jcn_only_AD.1820"; transcript_id "jcn_only_AD.1820"; gene_name "CUFF.294"; flanks "69901155-,69870406^"; structure "1^,2^"; splice_chain "69901155^,69870875^";
chr2	juncbase	jcn_only_AD	69870707	69870406	.	-	.	gene_id "jcn_only_AD.1821"; transcript_id "jcn_only_AD.1821"; gene_name "CUFF.294"; flanks "69870707-,69870406^"; structure "1^,2^"; splice_chain "69870875^,69870707^";
chr2	juncbase	jcn_only_AD	69870924	69870406	.	-	.	gene_id "jcn_only_AD.1822"; transcript_id "jcn_only_AD.1822"; gene_name "CUFF.294"; flanks "69870924-,69870406^"; structure "1^,2^"; splice_chain "69870924^,69870875^";
chr2	juncbase	intron_retention	110922097	110920709	.	-	.	gene_id "intron_retention.1126"; transcript_id "intron_retention.1126"; gene_name "CUFF.336"; flanks "110922097-,110920709^"; structure "0,1^2-"; splice_chain ",110922097^110920709-";
chr2	juncbase	jcn_only_AA	25180843	25186274	.	-	.	gene_id "jcn_only_AA.1417"; transcript_id "jcn_only_AA.1417"; gene_name "CUFF.222"; flanks "25180843-,25186274^"; structure "1-,2-"; splice_chain "25181470-,25180843-";
chr2	juncbase	alternative_donor	101541756	101549372	.	+	.	gene_id "alternative_donor.1550"; transcript_id "alternative_donor.1550"; gene_name "CUFF.323"; flanks "101541756-,101549372^"; structure "1^,2^"; splice_chain "101541756^,101541762^";
chr2	juncbase	alternative_acceptor	1168869	1215568	.	+	.	gene_id "alternative_acceptor.1078"; transcript_id "alternative_acceptor.1078"; gene_name ""; flanks "1168869-,1215568^"; structure "1-,2-"; splice_chain "1204789-,1215568-";
chr2	juncbase	jcn_only_AD	38231359	38244329	.	+	.	gene_id "jcn_only_AD.1823"; transcript_id "jcn_only_AD.1823"; gene_name "CUFF.269"; flanks "38231359-,38244329^"; structure "1^,2^"; splice_chain "38231359^,38239792^";
chr2	juncbase	intron_retention	264084	263372	.	-	.	gene_id "intron_retention.1127"; transcript_id "intron_retention.1127"; gene_name ""; flanks "264084-,263372^"; structure "0,1^2-"; splice_chain ",264084^263372-";
chr2	juncbase	cassette	169659183	169681144	.	+	.	gene_id "cassette.845"; transcript_id "cassette.845"; gene_name "CUFF.354"; flanks "169659183-,169681144^"; structure "0,1-2^"; splice_chain ",169668077-169668162^";
chr2	juncbase	intron_retention	219231823	219232153	.	+	.	gene_id "intron_retention.1128"; transcript_id "intron_retention.1128"; gene_name "CUFF.402"; flanks "219231823-,219232153^"; structure "0,1^2-"; splice_chain ",219231823^219232153-";
chr2	juncbase	cassette	1094096	1133308	.	+	.	gene_id "cassette.846"; transcript_id "cassette.846"; gene_name "CUFF.195"; flanks "1094096-,1133308^"; structure "0,1-2^"; splice_chain ",1099091-1099128^";
chr2	juncbase	intron_retention	242610856	242611606	.	+	.	gene_id "intron_retention.1129"; transcript_id "intron_retention.1129"; gene_name ""; flanks "242610856-,242611606^"; structure "0,1^2-"; splice_chain ",242610856^242611606-";
chr2	juncbase	alternative_donor	110922265	110920712	.	-	.	gene_id "alternative_donor.1551"; transcript_id "alternative_donor.1551"; gene_name "CUFF.307"; flanks "110922265-,110920712^"; structure "1^,2^"; splice_chain "110922265^,110922097^";
chr2	juncbase	intron_retention	38201357	38202355	.	+	.	gene_id "intron_retention.1130"; transcript_id "intron_retention.1130"; gene_name "CUFF.269"; flanks "38201357-,38202355^"; structure "0,1^2-"; splice_chain ",38201357^38202355-";
chr2	juncbase	intron_retention	4007506	4007364	.	-	.	gene_id "intron_retention.1131"; transcript_id "intron_retention.1131"; gene_name "CUFF.202"; flanks "4007506-,4007364^"; structure "0,1^2-"; splice_chain ",4007506^4007364-";
chr2	juncbase	intron_retention	88928250	88930918	.	+	.	gene_id "intron_retention.1132"; transcript_id "intron_retention.1132"; gene_name "CUFF.313"; flanks "88928250-,88930918^"; structure "0,1^2-"; splice_chain ",88928250^88930918-";
chr2	juncbase	alternative_donor	207630471	207631368	.	+	.	gene_id "alternative_donor.1552"; transcript_id "alternative_donor.1552"; gene_name "CUFF.394"; flanks "207630471-,207631368^"; structure "1^,2^"; splice_chain "207630471^,207630486^";
chr2	juncbase	alternative_donor	207630378	207631368	.	+	.	gene_id "alternative_donor.1553"; transcript_id "alternative_donor.1553"; gene_name "CUFF.394"; flanks "207630378-,207631368^"; structure "1^,2^"; splice_chain "207630378^,207630486^";
chr2	juncbase	alternative_donor	207630242	207631368	.	+	.	gene_id "alternative_donor.1554"; transcript_id "alternative_donor.1554"; gene_name "CUFF.394"; flanks "207630242-,207631368^"; structure "1^,2^"; splice_chain "207630242^,207630486^";
chr2	juncbase	alternative_donor	61753555	61749818	.	-	.	gene_id "alternative_donor.1555"; transcript_id "alternative_donor.1555"; gene_name "CUFF.283"; flanks "61753555-,61749818^"; structure "1^,2^"; splice_chain "61753556^,61753555^";
chr2	juncbase	alternative_donor	61752405	61749818	.	-	.	gene_id "alternative_donor.1556"; transcript_id "alternative_donor.1556"; gene_name "CUFF.283"; flanks "61752405-,61749818^"; structure "1^,2^"; splice_chain "61753556^,61752405^";
chr2	juncbase	intron_retention	27680993	27680843	.	-	.	gene_id "intron_retention.1133"; transcript_id "intron_retention.1133"; gene_name "CUFF.226"; flanks "27680993-,27680843^"; structure "0,1^2-"; splice_chain ",27680993^27680843-";
chr2	juncbase	jcn_only_AD	25194425	25190162	.	-	.	gene_id "jcn_only_AD.1824"; transcript_id "jcn_only_AD.1824"; gene_name "CUFF.222"; flanks "25194425-,25190162^"; structure "1^,2^"; splice_chain "25194425^,25194285^";
chr2	juncbase	jcn_only_AA	171376050	171399416	.	+	.	gene_id "jcn_only_AA.1418"; transcript_id "jcn_only_AA.1418"; gene_name "CUFF.360"; flanks "171376050-,171399416^"; structure "1-,2-"; splice_chain "171381015-,171399416-";
chr2	juncbase	intron_retention	220100307	220100430	.	+	.	gene_id "intron_retention.1134"; transcript_id "intron_retention.1134"; gene_name "CUFF.409"; flanks "220100307-,220100430^"; structure "0,1^2-"; splice_chain ",220100307^220100430-";
chr2	juncbase	intron_retention	166731189	166727530	.	-	.	gene_id "intron_retention.1135"; transcript_id "intron_retention.1135"; gene_name "CUFF.352"; flanks "166731189-,166727530^"; structure "0,1^2-"; splice_chain ",166731189^166727530-";
chr2	juncbase	jcn_only_AD	3447662	3461392	.	+	.	gene_id "jcn_only_AD.1825"; transcript_id "jcn_only_AD.1825"; gene_name "CUFF.198"; flanks "3447662-,3461392^"; structure "1^,2^"; splice_chain "3447662^,3453248^";
chr2	juncbase	jcn_only_AD	3461000	3461392	.	+	.	gene_id "jcn_only_AD.1826"; transcript_id "jcn_only_AD.1826"; gene_name "CUFF.198"; flanks "3461000-,3461392^"; structure "1^,2^"; splice_chain "3453248^,3461000^";
chr2	juncbase	jcn_only_AD	220094680	220094950	.	+	.	gene_id "jcn_only_AD.1827"; transcript_id "jcn_only_AD.1827"; gene_name "CUFF.409"; flanks "220094680-,220094950^"; structure "1^,2^"; splice_chain "220094622^,220094680^";
chr2	juncbase	jcn_only_AD	220094702	220094950	.	+	.	gene_id "jcn_only_AD.1828"; transcript_id "jcn_only_AD.1828"; gene_name "CUFF.409"; flanks "220094702-,220094950^"; structure "1^,2^"; splice_chain "220094622^,220094702^";
chr2	juncbase	jcn_only_AA	110927575	110958998	.	-	.	gene_id "jcn_only_AA.1419"; transcript_id "jcn_only_AA.1419"; gene_name "CUFF.336"; flanks "110927575-,110958998^"; structure "1-,2-"; splice_chain "110937261-,110927575-";
chr2	juncbase	jcn_only_AA	242440492	242440893	.	-	.	gene_id "jcn_only_AA.1420"; transcript_id "jcn_only_AA.1420"; gene_name ""; flanks "242440492-,242440893^"; structure "1-,2-"; splice_chain "242440492-,242440334-";
chr2	juncbase	jcn_only_AA	242440262	242440893	.	-	.	gene_id "jcn_only_AA.1421"; transcript_id "jcn_only_AA.1421"; gene_name ""; flanks "242440262-,242440893^"; structure "1-,2-"; splice_chain "242440334-,242440262-";
chr2	juncbase	alternative_acceptor	110881640	110883214	.	-	.	gene_id "alternative_acceptor.1079"; transcript_id "alternative_acceptor.1079"; gene_name "CUFF.336"; flanks "110881640-,110883214^"; structure "1-,2-"; splice_chain "110882900-,110881640-";
chr2	juncbase	alternative_acceptor	33572577	33585670	.	+	.	gene_id "alternative_acceptor.1080"; transcript_id "alternative_acceptor.1080"; gene_name ""; flanks "33572577-,33585670^"; structure "1-,2-"; splice_chain "33585664-,33585670-";
chr2	juncbase	intron_retention	79363091	79362889	.	-	.	gene_id "intron_retention.1136"; transcript_id "intron_retention.1136"; gene_name ""; flanks "79363091-,79362889^"; structure "0,1^2-"; splice_chain ",79363091^79362889-";
chr2	juncbase	intron_retention	676574	676238	.	-	.	gene_id "intron_retention.1137"; transcript_id "intron_retention.1137"; gene_name ""; flanks "676574-,676238^"; structure "0,1^2-"; splice_chain ",676574^676238-";
chr2	juncbase	jcn_only_AD	109066145	109067484	.	+	.	gene_id "jcn_only_AD.1829"; transcript_id "jcn_only_AD.1829"; gene_name "CUFF.333"; flanks "109066145-,109067484^"; structure "1^,2^"; splice_chain "109066145^,109066450^";
chr2	juncbase	jcn_only_AA	73280680	73285657	.	-	.	gene_id "jcn_only_AA.1422"; transcript_id "jcn_only_AA.1422"; gene_name "CUFF.297"; flanks "73280680-,73285657^"; structure "1-,2-"; splice_chain "73280680-,73268060-";
chr2	juncbase	jcn_only_AA	73269714	73285657	.	-	.	gene_id "jcn_only_AA.1423"; transcript_id "jcn_only_AA.1423"; gene_name "CUFF.297"; flanks "73269714-,73285657^"; structure "1-,2-"; splice_chain "73269714-,73268060-";
chr2	juncbase	jcn_only_AA	73277028	73285657	.	-	.	gene_id "jcn_only_AA.1424"; transcript_id "jcn_only_AA.1424"; gene_name "CUFF.297"; flanks "73277028-,73285657^"; structure "1-,2-"; splice_chain "73277028-,73268060-";
chr2	juncbase	jcn_only_AA	73268790	73285657	.	-	.	gene_id "jcn_only_AA.1425"; transcript_id "jcn_only_AA.1425"; gene_name "CUFF.297"; flanks "73268790-,73285657^"; structure "1-,2-"; splice_chain "73268790-,73268060-";
chr2	juncbase	jcn_only_AA	27731118	27741655	.	+	.	gene_id "jcn_only_AA.1426"; transcript_id "jcn_only_AA.1426"; gene_name "CUFF.227"; flanks "27731118-,27741655^"; structure "1-,2-"; splice_chain "27732394-,27741655-";
chr2	juncbase	alternative_acceptor	171376050	171399416	.	+	.	gene_id "alternative_acceptor.1081"; transcript_id "alternative_acceptor.1081"; gene_name "CUFF.360"; flanks "171376050-,171399416^"; structure "1-,2-"; splice_chain "171381015-,171399416-";
chr2	juncbase	alternative_donor	68384393	68374699	.	-	.	gene_id "alternative_donor.1557"; transcript_id "alternative_donor.1557"; gene_name "CUFF.287"; flanks "68384393-,68374699^"; structure "1^,2^"; splice_chain "68384506^,68384393^";
chr2	juncbase	alternative_donor	68384059	68374699	.	-	.	gene_id "alternative_donor.1558"; transcript_id "alternative_donor.1558"; gene_name "CUFF.287"; flanks "68384059-,68374699^"; structure "1^,2^"; splice_chain "68384506^,68384059^";
chr2	juncbase	jcn_only_AA	169783800	169787175	.	-	.	gene_id "jcn_only_AA.1427"; transcript_id "jcn_only_AA.1427"; gene_name "CUFF.355"; flanks "169783800-,169787175^"; structure "1-,2-"; splice_chain "169783872-,169783800-";
chr2	juncbase	cassette	99232809	99234631	.	+	.	gene_id "cassette.847"; transcript_id "cassette.847"; gene_name "CUFF.320"; flanks "99232809-,99234631^"; structure "0,1-2^"; splice_chain ",99232895-99232996^";
chr2	juncbase	alternative_acceptor	166732742	166737189	.	-	.	gene_id "alternative_acceptor.1082"; transcript_id "alternative_acceptor.1082"; gene_name "CUFF.352"; flanks "166732742-,166737189^"; structure "1-,2-"; splice_chain "166736477-,166732742-";
chr2	juncbase	jcn_only_AD	133070568	133074682	.	+	.	gene_id "jcn_only_AD.1830"; transcript_id "jcn_only_AD.1830"; gene_name "CUFF.341"; flanks "133070568-,133074682^"; structure "1^,2^"; splice_chain "133070568^,133070572^";
chr2	juncbase	intron_retention	675758	675630	.	-	.	gene_id "intron_retention.1138"; transcript_id "intron_retention.1138"; gene_name "CUFF.193"; flanks "675758-,675630^"; structure "0,1^2-"; splice_chain ",675758^675630-";
chr2	juncbase	alternative_acceptor	73280680	73285657	.	-	.	gene_id "alternative_acceptor.1083"; transcript_id "alternative_acceptor.1083"; gene_name "CUFF.297"; flanks "73280680-,73285657^"; structure "1-,2-"; splice_chain "73280680-,73268790-";
chr2	juncbase	alternative_acceptor	73269714	73285657	.	-	.	gene_id "alternative_acceptor.1084"; transcript_id "alternative_acceptor.1084"; gene_name "CUFF.297"; flanks "73269714-,73285657^"; structure "1-,2-"; splice_chain "73269714-,73268790-";
chr2	juncbase	alternative_acceptor	73277028	73285657	.	-	.	gene_id "alternative_acceptor.1085"; transcript_id "alternative_acceptor.1085"; gene_name "CUFF.297"; flanks "73277028-,73285657^"; structure "1-,2-"; splice_chain "73277028-,73268790-";
chr2	juncbase	alternative_acceptor	73268060	73285657	.	-	.	gene_id "alternative_acceptor.1086"; transcript_id "alternative_acceptor.1086"; gene_name "CUFF.297"; flanks "73268060-,73285657^"; structure "1-,2-"; splice_chain "73268790-,73268060-";
chr2	juncbase	intron_retention	73226078	73215477	.	-	.	gene_id "intron_retention.1139"; transcript_id "intron_retention.1139"; gene_name "CUFF.297"; flanks "73226078-,73215477^"; structure "0,1^2-"; splice_chain ",73226078^73215477-";
chr2	juncbase	jcn_only_AD	48898819	49003419	.	+	.	gene_id "jcn_only_AD.1831"; transcript_id "jcn_only_AD.1831"; gene_name "CUFF.278"; flanks "48898819-,49003419^"; structure "1^,2^"; splice_chain "48898819^,48996213^";
chr2	juncbase	jcn_only_AD	48996260	49003419	.	+	.	gene_id "jcn_only_AD.1832"; transcript_id "jcn_only_AD.1832"; gene_name "CUFF.278"; flanks "48996260-,49003419^"; structure "1^,2^"; splice_chain "48996213^,48996260^";
chr2	juncbase	jcn_only_AD	101436876	101521195	.	+	.	gene_id "jcn_only_AD.1833"; transcript_id "jcn_only_AD.1833"; gene_name "CUFF.323"; flanks "101436876-,101521195^"; structure "1^,2^"; splice_chain "101436876^,101437661^";
chr2	juncbase	intron_retention	46842076	46839483	.	-	.	gene_id "intron_retention.1140"; transcript_id "intron_retention.1140"; gene_name ""; flanks "46842076-,46839483^"; structure "0,1^2-"; splice_chain ",46842076^46839483-";
chr2	juncbase	intron_retention	242438054	242437764	.	-	.	gene_id "intron_retention.1141"; transcript_id "intron_retention.1141"; gene_name "CUFF.421"; flanks "242438054-,242437764^"; structure "0,1^2-"; splice_chain ",242438054^242437764-";
chr2	juncbase	jcn_only_AA	175216453	175243651	.	-	.	gene_id "jcn_only_AA.1428"; transcript_id "jcn_only_AA.1428"; gene_name "CUFF.370"; flanks "175216453-,175243651^"; structure "1-,2-"; splice_chain "175223264-,175216453-";
chr2	juncbase	jcn_only_AA	175234742	175243651	.	-	.	gene_id "jcn_only_AA.1429"; transcript_id "jcn_only_AA.1429"; gene_name "CUFF.370"; flanks "175234742-,175243651^"; structure "1-,2-"; splice_chain "175234742-,175223264-";
chr2	juncbase	jcn_only_AA	3482704	3488491	.	+	.	gene_id "jcn_only_AA.1430"; transcript_id "jcn_only_AA.1430"; gene_name ""; flanks "3482704-,3488491^"; structure "1-,2-"; splice_chain "3482990-,3488491-";
chr2	juncbase	alternative_donor	1094096	1099091	.	+	.	gene_id "alternative_donor.1559"; transcript_id "alternative_donor.1559"; gene_name "CUFF.195"; flanks "1094096-,1099091^"; structure "1^,2^"; splice_chain "1094096^,1098396^";
chr2	juncbase	jcn_only_AD	242436597	242435949	.	-	.	gene_id "jcn_only_AD.1834"; transcript_id "jcn_only_AD.1834"; gene_name "CUFF.421"; flanks "242436597-,242435949^"; structure "1^,2^"; splice_chain "242436715^,242436597^";
chr2	juncbase	jcn_only_AD	242437031	242435949	.	-	.	gene_id "jcn_only_AD.1835"; transcript_id "jcn_only_AD.1835"; gene_name "CUFF.421"; flanks "242437031-,242435949^"; structure "1^,2^"; splice_chain "242437031^,242436715^";
chr2	juncbase	cassette	242590526	242592927	.	+	.	gene_id "cassette.848"; transcript_id "cassette.848"; gene_name "CUFF.422"; flanks "242590526-,242592927^"; structure "0,1-2^"; splice_chain ",242590679-242590750^";
chr2	juncbase	jcn_only_AD	3469466	3481466	.	+	.	gene_id "jcn_only_AD.1836"; transcript_id "jcn_only_AD.1836"; gene_name "CUFF.198"; flanks "3469466-,3481466^"; structure "1^,2^"; splice_chain "3469466^,3476373^";
chr2	juncbase	alternative_donor	69901155	69870406	.	-	.	gene_id "alternative_donor.1560"; transcript_id "alternative_donor.1560"; gene_name "CUFF.294,CUFF.312"; flanks "69901155-,69870406^"; structure "1^,2^"; splice_chain "69901155^,69870707^";
chr2	juncbase	alternative_donor	69870924	69870406	.	-	.	gene_id "alternative_donor.1561"; transcript_id "alternative_donor.1561"; gene_name "CUFF.294,CUFF.312"; flanks "69870924-,69870406^"; structure "1^,2^"; splice_chain "69870924^,69870707^";
chr2	juncbase	alternative_donor	69870875	69870406	.	-	.	gene_id "alternative_donor.1562"; transcript_id "alternative_donor.1562"; gene_name "CUFF.294,CUFF.312"; flanks "69870875-,69870406^"; structure "1^,2^"; splice_chain "69870875^,69870707^";
chr2	juncbase	alternative_donor	208031481	208030430	.	-	.	gene_id "alternative_donor.1563"; transcript_id "alternative_donor.1563"; gene_name ""; flanks "208031481-,208030430^"; structure "1^,2^"; splice_chain "208031718^,208031481^";
chr2	juncbase	alternative_donor	208030637	208030430	.	-	.	gene_id "alternative_donor.1564"; transcript_id "alternative_donor.1564"; gene_name ""; flanks "208030637-,208030430^"; structure "1^,2^"; splice_chain "208031718^,208030637^";
chr2	juncbase	alternative_donor	208013706	207989128	.	-	.	gene_id "alternative_donor.1565"; transcript_id "alternative_donor.1565"; gene_name "CUFF.396"; flanks "208013706-,207989128^"; structure "1^,2^"; splice_chain "208031864^,208013706^";
chr2	juncbase	alternative_donor	208030191	207989128	.	-	.	gene_id "alternative_donor.1566"; transcript_id "alternative_donor.1566"; gene_name "CUFF.396"; flanks "208030191-,207989128^"; structure "1^,2^"; splice_chain "208031864^,208030191^";
chr2	juncbase	alternative_donor	207998791	207989128	.	-	.	gene_id "alternative_donor.1567"; transcript_id "alternative_donor.1567"; gene_name "CUFF.396"; flanks "207998791-,207989128^"; structure "1^,2^"; splice_chain "208031864^,207998791^";
chr2	juncbase	jcn_only_AD	27712482	27708370	.	-	.	gene_id "jcn_only_AD.1837"; transcript_id "jcn_only_AD.1837"; gene_name "CUFF.226"; flanks "27712482-,27708370^"; structure "1^,2^"; splice_chain "27712482^,27709026^";
chr2	juncbase	intron_retention	110922265	110920709	.	-	.	gene_id "intron_retention.1142"; transcript_id "intron_retention.1142"; gene_name "CUFF.336"; flanks "110922265-,110920709^"; structure "0,1^2-"; splice_chain ",110922265^110920709-";
chr2	juncbase	alternative_donor	68384506	68374699	.	-	.	gene_id "alternative_donor.1568"; transcript_id "alternative_donor.1568"; gene_name "CUFF.287"; flanks "68384506-,68374699^"; structure "1^,2^"; splice_chain "68384506^,68384393^";
chr2	juncbase	alternative_donor	68384059	68374699	.	-	.	gene_id "alternative_donor.1569"; transcript_id "alternative_donor.1569"; gene_name "CUFF.287"; flanks "68384059-,68374699^"; structure "1^,2^"; splice_chain "68384393^,68384059^";
chr2	juncbase	intron_retention	110882796	110881640	.	-	.	gene_id "intron_retention.1143"; transcript_id "intron_retention.1143"; gene_name "CUFF.336"; flanks "110882796-,110881640^"; structure "0,1^2-"; splice_chain ",110882796^110881640-";
chr2	juncbase	alternative_acceptor	219449444	219452309	.	+	.	gene_id "alternative_acceptor.1087"; transcript_id "alternative_acceptor.1087"; gene_name "CUFF.195,CUFF.403"; flanks "219449444-,219452309^"; structure "1-,2-"; splice_chain "219452028-,219452309-";
chr2	juncbase	alternative_donor	110883214	110881640	.	-	.	gene_id "alternative_donor.1570"; transcript_id "alternative_donor.1570"; gene_name "CUFF.336"; flanks "110883214-,110881640^"; structure "1^,2^"; splice_chain "110883214^,110882796^";
chr2	juncbase	jcn_only_AA	27668316	27668612	.	-	.	gene_id "jcn_only_AA.1431"; transcript_id "jcn_only_AA.1431"; gene_name "CUFF.226"; flanks "27668316-,27668612^"; structure "1-,2-"; splice_chain "27668496-,27668316-";
chr2	juncbase	intron_retention	61720050	61719883	.	-	.	gene_id "intron_retention.1144"; transcript_id "intron_retention.1144"; gene_name "CUFF.283"; flanks "61720050-,61719883^"; structure "0,1^2-"; splice_chain ",61720050^61719883-";
chr2	juncbase	alternative_acceptor	25174423	25179912	.	-	.	gene_id "alternative_acceptor.1088"; transcript_id "alternative_acceptor.1088"; gene_name "CUFF.222"; flanks "25174423-,25179912^"; structure "1-,2-"; splice_chain "25176504-,25174423-";
chr2	juncbase	alternative_acceptor	27731118	27741655	.	+	.	gene_id "alternative_acceptor.1089"; transcript_id "alternative_acceptor.1089"; gene_name "CUFF.227"; flanks "27731118-,27741655^"; structure "1-,2-"; splice_chain "27732394-,27741655-";
chr2	juncbase	intron_retention	61726000	61725927	.	-	.	gene_id "intron_retention.1145"; transcript_id "intron_retention.1145"; gene_name "CUFF.283"; flanks "61726000-,61725927^"; structure "0,1^2-"; splice_chain ",61726000^61725927-";
chr2	juncbase	jcn_only_AD	171376050	171399416	.	+	.	gene_id "jcn_only_AD.1838"; transcript_id "jcn_only_AD.1838"; gene_name "CUFF.360"; flanks "171376050-,171399416^"; structure "1^,2^"; splice_chain "171376050^,171381136^";
chr2	juncbase	alternative_acceptor	200472850	200493787	.	+	.	gene_id "alternative_acceptor.1090"; transcript_id "alternative_acceptor.1090"; gene_name "CUFF.389"; flanks "200472850-,200493787^"; structure "1-,2-"; splice_chain "200489255-,200493787-";
chr2	juncbase	jcn_only_AD	61763845	61761038	.	-	.	gene_id "jcn_only_AD.1839"; transcript_id "jcn_only_AD.1839"; gene_name "CUFF.283"; flanks "61763845-,61761038^"; structure "1^,2^"; splice_chain "61765627^,61763845^";
chr2	juncbase	jcn_only_AD	61763337	61761038	.	-	.	gene_id "jcn_only_AD.1840"; transcript_id "jcn_only_AD.1840"; gene_name "CUFF.283"; flanks "61763337-,61761038^"; structure "1^,2^"; splice_chain "61765627^,61763337^";
chr2	juncbase	jcn_only_AD	61761558	61761038	.	-	.	gene_id "jcn_only_AD.1841"; transcript_id "jcn_only_AD.1841"; gene_name "CUFF.283"; flanks "61761558-,61761038^"; structure "1^,2^"; splice_chain "61765627^,61761558^";
chr2	juncbase	jcn_only_AD	61764697	61761038	.	-	.	gene_id "jcn_only_AD.1842"; transcript_id "jcn_only_AD.1842"; gene_name "CUFF.283"; flanks "61764697-,61761038^"; structure "1^,2^"; splice_chain "61765627^,61764697^";
chr2	juncbase	jcn_only_AD	61764154	61761038	.	-	.	gene_id "jcn_only_AD.1843"; transcript_id "jcn_only_AD.1843"; gene_name "CUFF.283"; flanks "61764154-,61761038^"; structure "1^,2^"; splice_chain "61765627^,61764154^";
chr2	juncbase	jcn_only_AD	61761693	61761038	.	-	.	gene_id "jcn_only_AD.1844"; transcript_id "jcn_only_AD.1844"; gene_name "CUFF.283"; flanks "61761693-,61761038^"; structure "1^,2^"; splice_chain "61765627^,61761693^";
chr2	juncbase	intron_retention	677473	680044	.	+	.	gene_id "intron_retention.1146"; transcript_id "intron_retention.1146"; gene_name "CUFF.194"; flanks "677473-,680044^"; structure "0,1^2-"; splice_chain ",677473^680044-";
chr2	juncbase	jcn_only_AD	242610856	242611606	.	+	.	gene_id "jcn_only_AD.1845"; transcript_id "jcn_only_AD.1845"; gene_name "CUFF.422"; flanks "242610856-,242611606^"; structure "1^,2^"; splice_chain "242610840^,242610856^";
chr2	juncbase	jcn_only_AD	242610820	242611606	.	+	.	gene_id "jcn_only_AD.1846"; transcript_id "jcn_only_AD.1846"; gene_name "CUFF.422"; flanks "242610820-,242611606^"; structure "1^,2^"; splice_chain "242610820^,242610840^";
chr2	juncbase	cassette	264782	263372	.	-	.	gene_id "cassette.849"; transcript_id "cassette.849"; gene_name "CUFF.190"; flanks "264782-,263372^"; structure "0,1-2^"; splice_chain ",263762-263564^";
chr2	juncbase	alternative_donor	61763845	61761038	.	-	.	gene_id "alternative_donor.1571"; transcript_id "alternative_donor.1571"; gene_name "CUFF.283"; flanks "61763845-,61761038^"; structure "1^,2^"; splice_chain "61764154^,61763845^";
chr2	juncbase	alternative_donor	61763337	61761038	.	-	.	gene_id "alternative_donor.1572"; transcript_id "alternative_donor.1572"; gene_name "CUFF.283"; flanks "61763337-,61761038^"; structure "1^,2^"; splice_chain "61764154^,61763337^";
chr2	juncbase	alternative_donor	61761558	61761038	.	-	.	gene_id "alternative_donor.1573"; transcript_id "alternative_donor.1573"; gene_name "CUFF.283"; flanks "61761558-,61761038^"; structure "1^,2^"; splice_chain "61764154^,61761558^";
chr2	juncbase	alternative_donor	61764697	61761038	.	-	.	gene_id "alternative_donor.1574"; transcript_id "alternative_donor.1574"; gene_name "CUFF.283"; flanks "61764697-,61761038^"; structure "1^,2^"; splice_chain "61764697^,61764154^";
chr2	juncbase	alternative_donor	61765627	61761038	.	-	.	gene_id "alternative_donor.1575"; transcript_id "alternative_donor.1575"; gene_name "CUFF.283"; flanks "61765627-,61761038^"; structure "1^,2^"; splice_chain "61765627^,61764154^";
chr2	juncbase	alternative_donor	61761693	61761038	.	-	.	gene_id "alternative_donor.1576"; transcript_id "alternative_donor.1576"; gene_name "CUFF.283"; flanks "61761693-,61761038^"; structure "1^,2^"; splice_chain "61764154^,61761693^";
chr2	juncbase	cassette	228172635	228173920	.	+	.	gene_id "cassette.850"; transcript_id "cassette.850"; gene_name "CUFF.411"; flanks "228172635-,228173920^"; structure "0,1-2^"; splice_chain ",228173615-228173792^";
chr2	juncbase	alternative_acceptor	109089355	109091991	.	+	.	gene_id "alternative_acceptor.1091"; transcript_id "alternative_acceptor.1091"; gene_name "CUFF.269,CUFF.333"; flanks "109089355-,109091991^"; structure "1-,2-"; splice_chain "109091245-,109091991-";
chr2	juncbase	intron_retention	220094702	220094950	.	+	.	gene_id "intron_retention.1147"; transcript_id "intron_retention.1147"; gene_name ""; flanks "220094702-,220094950^"; structure "0,1^2-"; splice_chain ",220094702^220094950-";
chr2	juncbase	jcn_only_AA	27676380	27676849	.	-	.	gene_id "jcn_only_AA.1432"; transcript_id "jcn_only_AA.1432"; gene_name "CUFF.226"; flanks "27676380-,27676849^"; structure "1-,2-"; splice_chain "27676606-,27676380-";
chr2	juncbase	jcn_only_AD	207988498	207953305	.	-	.	gene_id "jcn_only_AD.1847"; transcript_id "jcn_only_AD.1847"; gene_name "CUFF.396"; flanks "207988498-,207953305^"; structure "1^,2^"; splice_chain "207989068^,207988498^";
chr2	juncbase	jcn_only_AD	207988700	207953305	.	-	.	gene_id "jcn_only_AD.1848"; transcript_id "jcn_only_AD.1848"; gene_name "CUFF.396"; flanks "207988700-,207953305^"; structure "1^,2^"; splice_chain "207989068^,207988700^";
chr2	juncbase	jcn_only_AD	1079341	1204789	.	+	.	gene_id "jcn_only_AD.1849"; transcript_id "jcn_only_AD.1849"; gene_name "CUFF.195"; flanks "1079341-,1204789^"; structure "1^,2^"; splice_chain "1079341^,1168869^";
chr2	juncbase	jcn_only_AD	153476232	153481952	.	+	.	gene_id "jcn_only_AD.1850"; transcript_id "jcn_only_AD.1850"; gene_name "CUFF.347"; flanks "153476232-,153481952^"; structure "1^,2^"; splice_chain "153476232^,153479071^";
chr2	juncbase	alternative_donor	101609989	101612258	.	+	.	gene_id "alternative_donor.1577"; transcript_id "alternative_donor.1577"; gene_name ""; flanks "101609989-,101612258^"; structure "1^,2^"; splice_chain "101609989^,101611042^";
chr2	juncbase	cassette	200496618	200512397	.	+	.	gene_id "cassette.851"; transcript_id "cassette.851"; gene_name "CUFF.389"; flanks "200496618-,200512397^"; structure "0,1-2^"; splice_chain ",200511777-200511902^";
chr2	juncbase	intron_retention	61765273	61764722	.	-	.	gene_id "intron_retention.1148"; transcript_id "intron_retention.1148"; gene_name ""; flanks "61765273-,61764722^"; structure "0,1^2-"; splice_chain ",61765273^61764722-";
chr2	juncbase	intron_retention	220095127	220096982	.	+	.	gene_id "intron_retention.1149"; transcript_id "intron_retention.1149"; gene_name ""; flanks "220095127-,220096982^"; structure "0,1^2-"; splice_chain ",220095127^220096982-";
chr2	juncbase	jcn_only_AD	38224657	38231134	.	+	.	gene_id "jcn_only_AD.1851"; transcript_id "jcn_only_AD.1851"; gene_name "CUFF.269"; flanks "38224657-,38231134^"; structure "1^,2^"; splice_chain "38224657^,38230169^";
chr2	juncbase	alternative_donor	25186274	25180843	.	-	.	gene_id "alternative_donor.1578"; transcript_id "alternative_donor.1578"; gene_name "CUFF.222"; flanks "25186274-,25180843^"; structure "1^,2^"; splice_chain "25186274^,25181416^";
chr2	juncbase	intron_retention	242447920	242447550	.	-	.	gene_id "intron_retention.1150"; transcript_id "intron_retention.1150"; gene_name ""; flanks "242447920-,242447550^"; structure "0,1^2-"; splice_chain ",242447920^242447550-";
chr2	juncbase	jcn_only_AD	160615846	160619391	.	+	.	gene_id "jcn_only_AD.1852"; transcript_id "jcn_only_AD.1852"; gene_name "CUFF.350"; flanks "160615846-,160619391^"; structure "1^,2^"; splice_chain "160615846^,160615869^";
chr2	juncbase	intron_retention	86400773	86398435	.	-	.	gene_id "intron_retention.1151"; transcript_id "intron_retention.1151"; gene_name "CUFF.307"; flanks "86400773-,86398435^"; structure "0,1^2-"; splice_chain ",86400773^86398435-";
chr2	juncbase	jcn_only_AD	4021135	4009484	.	-	.	gene_id "jcn_only_AD.1853"; transcript_id "jcn_only_AD.1853"; gene_name "CUFF.202,CUFF.297"; flanks "4021135-,4009484^"; structure "1^,2^"; splice_chain "4021135^,4015769^";
chr2	juncbase	cassette	169668162	169684668	.	+	.	gene_id "cassette.852"; transcript_id "cassette.852"; gene_name "CUFF.354"; flanks "169668162-,169684668^"; structure "0,1-2^"; splice_chain ",169681144-169681227^";
chr2	juncbase	alternative_acceptor	153476232	153481952	.	+	.	gene_id "alternative_acceptor.1092"; transcript_id "alternative_acceptor.1092"; gene_name "CUFF.347"; flanks "153476232-,153481952^"; structure "1-,2-"; splice_chain "153479051-,153481952-";
chr2	juncbase	alternative_donor	27695117	27693962	.	-	.	gene_id "alternative_donor.1579"; transcript_id "alternative_donor.1579"; gene_name "CUFF.226"; flanks "27695117-,27693962^"; structure "1^,2^"; splice_chain "27695117^,27694100^";
chr2	juncbase	alternative_donor	208030637	208030430	.	-	.	gene_id "alternative_donor.1580"; transcript_id "alternative_donor.1580"; gene_name "CUFF.396"; flanks "208030637-,208030430^"; structure "1^,2^"; splice_chain "208031481^,208030637^";
chr2	juncbase	alternative_donor	208031718	208030430	.	-	.	gene_id "alternative_donor.1581"; transcript_id "alternative_donor.1581"; gene_name "CUFF.396"; flanks "208031718-,208030430^"; structure "1^,2^"; splice_chain "208031718^,208031481^";
chr2	juncbase	alternative_donor	4021135	4009484	.	-	.	gene_id "alternative_donor.1582"; transcript_id "alternative_donor.1582"; gene_name "CUFF.202,CUFF.297"; flanks "4021135-,4009484^"; structure "1^,2^"; splice_chain "4021135^,4015769^";
chr2	juncbase	alternative_donor	175243651	175216453	.	-	.	gene_id "alternative_donor.1583"; transcript_id "alternative_donor.1583"; gene_name "CUFF.370"; flanks "175243651-,175216453^"; structure "1^,2^"; splice_chain "175243651^,175234715^";
chr2	juncbase	jcn_only_AD	3461464	3464034	.	+	.	gene_id "jcn_only_AD.1854"; transcript_id "jcn_only_AD.1854"; gene_name "CUFF.198"; flanks "3461464-,3464034^"; structure "1^,2^"; splice_chain "3461464^,3462232^";
chr2	juncbase	jcn_only_AD	186662253	186678272	.	+	.	gene_id "jcn_only_AD.1855"; transcript_id "jcn_only_AD.1855"; gene_name "CUFF.380"; flanks "186662253-,186678272^"; structure "1^,2^"; splice_chain "186662253^,186673860^";
chr2	juncbase	alternative_donor	242610856	242611606	.	+	.	gene_id "alternative_donor.1584"; transcript_id "alternative_donor.1584"; gene_name "CUFF.422"; flanks "242610856-,242611606^"; structure "1^,2^"; splice_chain "242610840^,242610856^";
chr2	juncbase	alternative_donor	242610820	242611606	.	+	.	gene_id "alternative_donor.1585"; transcript_id "alternative_donor.1585"; gene_name "CUFF.422"; flanks "242610820-,242611606^"; structure "1^,2^"; splice_chain "242610820^,242610840^";
chr2	juncbase	jcn_only_AA	109085540	109086107	.	+	.	gene_id "jcn_only_AA.1433"; transcript_id "jcn_only_AA.1433"; gene_name "CUFF.198,CUFF.333"; flanks "109085540-,109086107^"; structure "1-,2-"; splice_chain "109085756-,109086107-";
chr2	juncbase	intron_retention	3481566	3482617	.	+	.	gene_id "intron_retention.1152"; transcript_id "intron_retention.1152"; gene_name "CUFF.198"; flanks "3481566-,3482617^"; structure "0,1^2-"; splice_chain ",3481566^3482617-";
chr2	juncbase	alternative_donor	175689162	175677210	.	-	.	gene_id "alternative_donor.1586"; transcript_id "alternative_donor.1586"; gene_name "CUFF.222,CUFF.371"; flanks "175689162-,175677210^"; structure "1^,2^"; splice_chain "175689162^,175686457^";
chr2	juncbase	jcn_only_AD	88894987	88892923	.	-	.	gene_id "jcn_only_AD.1856"; transcript_id "jcn_only_AD.1856"; gene_name "CUFF.312"; flanks "88894987-,88892923^"; structure "1^,2^"; splice_chain "88894987^,88893431^";
chr2	juncbase	intron_retention	260085	253115	.	-	.	gene_id "intron_retention.1153"; transcript_id "intron_retention.1153"; gene_name ""; flanks "260085-,253115^"; structure "0,1^2-"; splice_chain ",260085^253115-";
chr2	juncbase	alternative_acceptor	99232996	99234631	.	+	.	gene_id "alternative_acceptor.1093"; transcript_id "alternative_acceptor.1093"; gene_name "CUFF.320"; flanks "99232996-,99234631^"; structure "1-,2-"; splice_chain "99234609-,99234631-";
chr2	juncbase	intron_retention	61761693	61761038	.	-	.	gene_id "intron_retention.1154"; transcript_id "intron_retention.1154"; gene_name ""; flanks "61761693-,61761038^"; structure "0,1^2-"; splice_chain ",61761693^61761038-";
chr2	juncbase	intron_retention	96195103	96195819	.	+	.	gene_id "intron_retention.1155"; transcript_id "intron_retention.1155"; gene_name "CUFF.316"; flanks "96195103-,96195819^"; structure "0,1^2-"; splice_chain ",96195103^96195819-";
chr2	juncbase	intron_retention	677289	676238	.	-	.	gene_id "intron_retention.1156"; transcript_id "intron_retention.1156"; gene_name ""; flanks "677289-,676238^"; structure "0,1^2-"; splice_chain ",677289^676238-";
chr2	juncbase	intron_retention	61764154	61761038	.	-	.	gene_id "intron_retention.1157"; transcript_id "intron_retention.1157"; gene_name ""; flanks "61764154-,61761038^"; structure "0,1^2-"; splice_chain ",61764154^61761038-";
chr2	juncbase	cassette	11593708	11587900	.	-	.	gene_id "cassette.853"; transcript_id "cassette.853"; gene_name "CUFF.213"; flanks "11593708-,11587900^"; structure "0,1-2^"; splice_chain ",11591932-11591328^";
chr2	juncbase	cassette	4021135	4008146	.	-	.	gene_id "cassette.854"; transcript_id "cassette.854"; gene_name "CUFF.202"; flanks "4021135-,4008146^"; structure "0,1-2^"; splice_chain ",4009484-4009360^";
chr2	juncbase	jcn_only_AA	171191960	171225732	.	+	.	gene_id "jcn_only_AA.1434"; transcript_id "jcn_only_AA.1434"; gene_name "CUFF.360"; flanks "171191960-,171225732^"; structure "1-,2-"; splice_chain "171225718-,171225732-";
chr2	juncbase	cassette	169699627	169707594	.	+	.	gene_id "cassette.855"; transcript_id "cassette.855"; gene_name "CUFF.354"; flanks "169699627-,169707594^"; structure "0,1-2^"; splice_chain ",169707346-169707516^";
chr2	juncbase	alternative_acceptor	219001	229966	.	-	.	gene_id "alternative_acceptor.1094"; transcript_id "alternative_acceptor.1094"; gene_name "CUFF.190"; flanks "219001-,229966^"; structure "1-,2-"; splice_chain "224920-,219001-";
chr2	juncbase	intron_retention	220095072	220096650	.	+	.	gene_id "intron_retention.1158"; transcript_id "intron_retention.1158"; gene_name ""; flanks "220095072-,220096650^"; structure "0,1^2-"; splice_chain ",220095072^220096650-";
chr2	juncbase	jcn_only_AD	1320147	1371115	.	+	.	gene_id "jcn_only_AD.1857"; transcript_id "jcn_only_AD.1857"; gene_name "CUFF.195"; flanks "1320147-,1371115^"; structure "1^,2^"; splice_chain "1320147^,1357636^";
chr2	juncbase	alternative_donor	33487888	33488361	.	+	.	gene_id "alternative_donor.1587"; transcript_id "alternative_donor.1587"; gene_name "CUFF.249"; flanks "33487888-,33488361^"; structure "1^,2^"; splice_chain "33487888^,33487891^";
chr2	juncbase	alternative_donor	1168869	1215568	.	+	.	gene_id "alternative_donor.1588"; transcript_id "alternative_donor.1588"; gene_name ""; flanks "1168869-,1215568^"; structure "1^,2^"; splice_chain "1168869^,1206365^";
chr2	juncbase	jcn_only_AA	3461464	3464034	.	+	.	gene_id "jcn_only_AA.1435"; transcript_id "jcn_only_AA.1435"; gene_name "CUFF.198,CUFF.380"; flanks "3461464-,3464034^"; structure "1-,2-"; splice_chain "3461566-,3464034-";
chr2	juncbase	intron_retention	177042731	177042549	.	-	.	gene_id "intron_retention.1159"; transcript_id "intron_retention.1159"; gene_name ""; flanks "177042731-,177042549^"; structure "0,1^2-"; splice_chain ",177042731^177042549-";
chr2	juncbase	alternative_donor	174136239	174072386	.	-	.	gene_id "alternative_donor.1589"; transcript_id "alternative_donor.1589"; gene_name "CUFF.364"; flanks "174136239-,174072386^"; structure "1^,2^"; splice_chain "174136239^,174074375^";
chr2	juncbase	alternative_acceptor	253115	260085	.	-	.	gene_id "alternative_acceptor.1095"; transcript_id "alternative_acceptor.1095"; gene_name "CUFF.190"; flanks "253115-,260085^"; structure "1-,2-"; splice_chain "256690-,253115-";
chr2	juncbase	cassette	11597305	11593924	.	-	.	gene_id "cassette.856"; transcript_id "cassette.856"; gene_name "CUFF.213"; flanks "11597305-,11593924^"; structure "0,1-2^"; splice_chain ",11595600-11595468^";
chr2	juncbase	alternative_donor	109085540	109086107	.	+	.	gene_id "alternative_donor.1590"; transcript_id "alternative_donor.1590"; gene_name "CUFF.333"; flanks "109085540-,109086107^"; structure "1^,2^"; splice_chain "109085540^,109085788^";
chr2	juncbase	cassette	110962477	110959071	.	-	.	gene_id "cassette.857"; transcript_id "cassette.857"; gene_name "CUFF.336"; flanks "110962477-,110959071^"; structure "0,1-2^"; splice_chain ",110960056-110959950^";
chr2	juncbase	alternative_donor	133070568	133074682	.	+	.	gene_id "alternative_donor.1591"; transcript_id "alternative_donor.1591"; gene_name "CUFF.341"; flanks "133070568-,133074682^"; structure "1^,2^"; splice_chain "133070568^,133070572^";
chr2	juncbase	alternative_acceptor	174072386	174136239	.	-	.	gene_id "alternative_acceptor.1096"; transcript_id "alternative_acceptor.1096"; gene_name "CUFF.364"; flanks "174072386-,174136239^"; structure "1-,2-"; splice_chain "174080564-,174072386-";
chr2	juncbase	cassette	38177738	38201183	.	+	.	gene_id "cassette.858"; transcript_id "cassette.858"; gene_name "CUFF.269"; flanks "38177738-,38201183^"; structure "0,1-2^"; splice_chain ",38178376-38179344^";
chr2	juncbase	intron_retention	4007506	4007226	.	-	.	gene_id "intron_retention.1160"; transcript_id "intron_retention.1160"; gene_name ""; flanks "4007506-,4007226^"; structure "0,1^2-"; splice_chain ",4007506^4007226-";
chr2	juncbase	alternative_acceptor	27670501	27670679	.	-	.	gene_id "alternative_acceptor.1097"; transcript_id "alternative_acceptor.1097"; gene_name "CUFF.226"; flanks "27670501-,27670679^"; structure "1-,2-"; splice_chain "27670524-,27670501-";
chr2	juncbase	cassette	242447858	242441123	.	-	.	gene_id "cassette.859"; transcript_id "cassette.859"; gene_name "CUFF.421"; flanks "242447858-,242441123^"; structure "0,1-2^"; splice_chain ",242447550-242447421^";
chr2	juncbase	cassette	242447920	242441123	.	-	.	gene_id "cassette.860"; transcript_id "cassette.860"; gene_name "CUFF.421"; flanks "242447920-,242441123^"; structure "0,1-2^"; splice_chain ",242447550-242447421^";
chr2	juncbase	jcn_only_AD	229966	219001	.	-	.	gene_id "jcn_only_AD.1858"; transcript_id "jcn_only_AD.1858"; gene_name "CUFF.190"; flanks "229966-,219001^"; structure "1^,2^"; splice_chain "229966^,224864^";
chr2	juncbase	jcn_only_AD	208030637	208030430	.	-	.	gene_id "jcn_only_AD.1859"; transcript_id "jcn_only_AD.1859"; gene_name "CUFF.396"; flanks "208030637-,208030430^"; structure "1^,2^"; splice_chain "208031481^,208030637^";
chr2	juncbase	jcn_only_AD	208031718	208030430	.	-	.	gene_id "jcn_only_AD.1860"; transcript_id "jcn_only_AD.1860"; gene_name "CUFF.396"; flanks "208031718-,208030430^"; structure "1^,2^"; splice_chain "208031718^,208031481^";
chr2	juncbase	jcn_only_AA	175677210	175689162	.	-	.	gene_id "jcn_only_AA.1436"; transcript_id "jcn_only_AA.1436"; gene_name "CUFF.371"; flanks "175677210-,175689162^"; structure "1-,2-"; splice_chain "175686507-,175677210-";
chr2	juncbase	intron_retention	242591389	242592927	.	+	.	gene_id "intron_retention.1161"; transcript_id "intron_retention.1161"; gene_name ""; flanks "242591389-,242592927^"; structure "0,1^2-"; splice_chain ",242591389^242592927-";
chr2	juncbase	intron_retention	242447733	242447550	.	-	.	gene_id "intron_retention.1162"; transcript_id "intron_retention.1162"; gene_name ""; flanks "242447733-,242447550^"; structure "0,1^2-"; splice_chain ",242447733^242447550-";
chr2	juncbase	jcn_only_AD	175689162	175677210	.	-	.	gene_id "jcn_only_AD.1861"; transcript_id "jcn_only_AD.1861"; gene_name "CUFF.222,CUFF.371"; flanks "175689162-,175677210^"; structure "1^,2^"; splice_chain "175689162^,175686457^";
chr2	juncbase	jcn_only_AD	208013706	207989128	.	-	.	gene_id "jcn_only_AD.1862"; transcript_id "jcn_only_AD.1862"; gene_name ""; flanks "208013706-,207989128^"; structure "1^,2^"; splice_chain "208030191^,208013706^";
chr2	juncbase	jcn_only_AD	207998791	207989128	.	-	.	gene_id "jcn_only_AD.1863"; transcript_id "jcn_only_AD.1863"; gene_name ""; flanks "207998791-,207989128^"; structure "1^,2^"; splice_chain "208030191^,207998791^";
chr2	juncbase	jcn_only_AD	208031864	207989128	.	-	.	gene_id "jcn_only_AD.1864"; transcript_id "jcn_only_AD.1864"; gene_name ""; flanks "208031864-,207989128^"; structure "1^,2^"; splice_chain "208031864^,208030191^";
chr2	juncbase	jcn_only_AA	200472850	200493787	.	+	.	gene_id "jcn_only_AA.1437"; transcript_id "jcn_only_AA.1437"; gene_name "CUFF.389"; flanks "200472850-,200493787^"; structure "1-,2-"; splice_chain "200489255-,200493787-";
chr2	juncbase	intron_retention	241405786	241405863	.	+	.	gene_id "intron_retention.1163"; transcript_id "intron_retention.1163"; gene_name ""; flanks "241405786-,241405863^"; structure "0,1^2-"; splice_chain ",241405786^241405863-";
chr2	juncbase	cassette	219433701	219445284	.	+	.	gene_id "cassette.861"; transcript_id "cassette.861"; gene_name "CUFF.403"; flanks "219433701-,219445284^"; structure "0,1-2^"; splice_chain ",219438718-219438956^";
chr2	juncbase	alternative_acceptor	169783800	169787175	.	-	.	gene_id "alternative_acceptor.1098"; transcript_id "alternative_acceptor.1098"; gene_name "CUFF.355"; flanks "169783800-,169787175^"; structure "1-,2-"; splice_chain "169783872-,169783800-";
chr2	juncbase	cassette	11605898	11593924	.	-	.	gene_id "cassette.862"; transcript_id "cassette.862"; gene_name "CUFF.213"; flanks "11605898-,11593924^"; structure "0,1-2^"; splice_chain ",11597359-11597305^";
chr2	juncbase	intron_retention	211082689	211081235	.	-	.	gene_id "intron_retention.1164"; transcript_id "intron_retention.1164"; gene_name "CUFF.397"; flanks "211082689-,211081235^"; structure "0,1^2-"; splice_chain ",211082689^211081235-";
chr2	juncbase	cassette	86400773	86397964	.	-	.	gene_id "cassette.863"; transcript_id "cassette.863"; gene_name "CUFF.307"; flanks "86400773-,86397964^"; structure "0,1-2^"; splice_chain ",86398504-86398331^";
chr2	juncbase	alternative_donor	73215387	73198814	.	-	.	gene_id "alternative_donor.1592"; transcript_id "alternative_donor.1592"; gene_name "CUFF.297,CUFF.336"; flanks "73215387-,73198814^"; structure "1^,2^"; splice_chain "73215387^,73208138^";
chr2	juncbase	jcn_only_AD	1133495	1161234	.	+	.	gene_id "jcn_only_AD.1865"; transcript_id "jcn_only_AD.1865"; gene_name "CUFF.195"; flanks "1133495-,1161234^"; structure "1^,2^"; splice_chain "1133495^,1158975^";
chr2	juncbase	jcn_only_AD	1159411	1161234	.	+	.	gene_id "jcn_only_AD.1866"; transcript_id "jcn_only_AD.1866"; gene_name "CUFF.195"; flanks "1159411-,1161234^"; structure "1^,2^"; splice_chain "1158975^,1159411^";
chr2	juncbase	jcn_only_AA	171264354	171300477	.	+	.	gene_id "jcn_only_AA.1438"; transcript_id "jcn_only_AA.1438"; gene_name "CUFF.360"; flanks "171264354-,171300477^"; structure "1-,2-"; splice_chain "171268211-,171300477-";
chr2	juncbase	alternative_donor	61753555	61749818	.	-	.	gene_id "alternative_donor.1593"; transcript_id "alternative_donor.1593"; gene_name "CUFF.283"; flanks "61753555-,61749818^"; structure "1^,2^"; splice_chain "61753555^,61752405^";
chr2	juncbase	alternative_donor	61753556	61749818	.	-	.	gene_id "alternative_donor.1594"; transcript_id "alternative_donor.1594"; gene_name "CUFF.283"; flanks "61753556-,61749818^"; structure "1^,2^"; splice_chain "61753556^,61752405^";
chr2	juncbase	jcn_only_AD	231023	230044	.	-	.	gene_id "jcn_only_AD.1867"; transcript_id "jcn_only_AD.1867"; gene_name "CUFF.190"; flanks "231023-,230044^"; structure "1^,2^"; splice_chain "231023^,230547^";
chr2	juncbase	jcn_only_AD	25186274	25180843	.	-	.	gene_id "jcn_only_AD.1868"; transcript_id "jcn_only_AD.1868"; gene_name "CUFF.222"; flanks "25186274-,25180843^"; structure "1^,2^"; splice_chain "25186274^,25181416^";
chr2	juncbase	jcn_only_AD	27695117	27693962	.	-	.	gene_id "jcn_only_AD.1869"; transcript_id "jcn_only_AD.1869"; gene_name "CUFF.226"; flanks "27695117-,27693962^"; structure "1^,2^"; splice_chain "27695117^,27694100^";
chr2	juncbase	cassette	27668796	27668316	.	-	.	gene_id "cassette.864"; transcript_id "cassette.864"; gene_name "CUFF.226"; flanks "27668796-,27668316^"; structure "0,1-2^"; splice_chain ",27668710-27668612^";
chr2	juncbase	alternative_donor	207630471	207631368	.	+	.	gene_id "alternative_donor.1595"; transcript_id "alternative_donor.1595"; gene_name "CUFF.394"; flanks "207630471-,207631368^"; structure "1^,2^"; splice_chain "207630242^,207630471^";
chr2	juncbase	alternative_donor	207630378	207631368	.	+	.	gene_id "alternative_donor.1596"; transcript_id "alternative_donor.1596"; gene_name "CUFF.394"; flanks "207630378-,207631368^"; structure "1^,2^"; splice_chain "207630242^,207630378^";
chr2	juncbase	alternative_donor	207630486	207631368	.	+	.	gene_id "alternative_donor.1597"; transcript_id "alternative_donor.1597"; gene_name "CUFF.394"; flanks "207630486-,207631368^"; structure "1^,2^"; splice_chain "207630242^,207630486^";
chr2	juncbase	jcn_only_AD	3453248	3461392	.	+	.	gene_id "jcn_only_AD.1870"; transcript_id "jcn_only_AD.1870"; gene_name "CUFF.198"; flanks "3453248-,3461392^"; structure "1^,2^"; splice_chain "3453248^,3461000^";
chr2	juncbase	jcn_only_AD	3447662	3461392	.	+	.	gene_id "jcn_only_AD.1871"; transcript_id "jcn_only_AD.1871"; gene_name "CUFF.198"; flanks "3447662-,3461392^"; structure "1^,2^"; splice_chain "3447662^,3461000^";
chr2	juncbase	cassette	175816892	175742856	.	-	.	gene_id "cassette.865"; transcript_id "cassette.865"; gene_name "CUFF.371"; flanks "175816892-,175742856^"; structure "0,1-2^"; splice_chain ",175779899-175779786^";
chr2	juncbase	jcn_only_AA	219457430	219458251	.	+	.	gene_id "jcn_only_AA.1439"; transcript_id "jcn_only_AA.1439"; gene_name "CUFF.403"; flanks "219457430-,219458251^"; structure "1-,2-"; splice_chain "219458251-,219458892-";
chr2	juncbase	jcn_only_AA	219457430	219458831	.	+	.	gene_id "jcn_only_AA.1440"; transcript_id "jcn_only_AA.1440"; gene_name "CUFF.403"; flanks "219457430-,219458831^"; structure "1-,2-"; splice_chain "219458831-,219458892-";
chr2	juncbase	alternative_donor	177053147	177043826	.	-	.	gene_id "alternative_donor.1598"; transcript_id "alternative_donor.1598"; gene_name "CUFF.375"; flanks "177053147-,177043826^"; structure "1^,2^"; splice_chain "177053147^,177052793^";
chr2	juncbase	jcn_only_AD	25179912	25174423	.	-	.	gene_id "jcn_only_AD.1872"; transcript_id "jcn_only_AD.1872"; gene_name "CUFF.193,CUFF.222"; flanks "25179912-,25174423^"; structure "1^,2^"; splice_chain "25179912^,25176419^";
chr2	juncbase	alternative_donor	219449444	219452309	.	+	.	gene_id "alternative_donor.1599"; transcript_id "alternative_donor.1599"; gene_name "CUFF.403"; flanks "219449444-,219452309^"; structure "1^,2^"; splice_chain "219449444^,219452123^";
chr2	juncbase	alternative_acceptor	207989128	208030191	.	-	.	gene_id "alternative_acceptor.1099"; transcript_id "alternative_acceptor.1099"; gene_name "CUFF.396"; flanks "207989128-,208030191^"; structure "1-,2-"; splice_chain "208013924-,207989128-";
chr2	juncbase	cassette	3469466	3482617	.	+	.	gene_id "cassette.866"; transcript_id "cassette.866"; gene_name "CUFF.198"; flanks "3469466-,3482617^"; structure "0,1-2^"; splice_chain ",3481466-3481566^";
chr2	juncbase	cassette	46819614	46808730	.	-	.	gene_id "cassette.867"; transcript_id "cassette.867"; gene_name "CUFF.277"; flanks "46819614-,46808730^"; structure "0,1-2^"; splice_chain ",46815318-46815214^";
chr2	juncbase	intron_retention	677289	675630	.	-	.	gene_id "intron_retention.1165"; transcript_id "intron_retention.1165"; gene_name "CUFF.193"; flanks "677289-,675630^"; structure "0,1^2-"; splice_chain ",677289^675630-";
chr2	juncbase	cassette	73215387	73188377	.	-	.	gene_id "cassette.868"; transcript_id "cassette.868"; gene_name "CUFF.297"; flanks "73215387-,73188377^"; structure "0,1-2^"; splice_chain ",73195662-73195577^";
chr2	juncbase	jcn_only_AD	69901155	69870406	.	-	.	gene_id "jcn_only_AD.1873"; transcript_id "jcn_only_AD.1873"; gene_name "CUFF.294,CUFF.312"; flanks "69901155-,69870406^"; structure "1^,2^"; splice_chain "69901155^,69870707^";
chr2	juncbase	jcn_only_AD	69870924	69870406	.	-	.	gene_id "jcn_only_AD.1874"; transcript_id "jcn_only_AD.1874"; gene_name "CUFF.294,CUFF.312"; flanks "69870924-,69870406^"; structure "1^,2^"; splice_chain "69870924^,69870707^";
chr2	juncbase	jcn_only_AD	69870875	69870406	.	-	.	gene_id "jcn_only_AD.1875"; transcript_id "jcn_only_AD.1875"; gene_name "CUFF.294,CUFF.312"; flanks "69870875-,69870406^"; structure "1^,2^"; splice_chain "69870875^,69870707^";
chr2	juncbase	jcn_only_AD	61765627	61764722	.	-	.	gene_id "jcn_only_AD.1876"; transcript_id "jcn_only_AD.1876"; gene_name ""; flanks "61765627-,61764722^"; structure "1^,2^"; splice_chain "61765627^,61765273^";
chr2	juncbase	jcn_only_AD	69901155	69870406	.	-	.	gene_id "jcn_only_AD.1877"; transcript_id "jcn_only_AD.1877"; gene_name "CUFF.294"; flanks "69901155-,69870406^"; structure "1^,2^"; splice_chain "69901155^,69870924^";
chr2	juncbase	jcn_only_AD	69870707	69870406	.	-	.	gene_id "jcn_only_AD.1878"; transcript_id "jcn_only_AD.1878"; gene_name "CUFF.294"; flanks "69870707-,69870406^"; structure "1^,2^"; splice_chain "69870924^,69870707^";
chr2	juncbase	jcn_only_AD	69870875	69870406	.	-	.	gene_id "jcn_only_AD.1879"; transcript_id "jcn_only_AD.1879"; gene_name "CUFF.294"; flanks "69870875-,69870406^"; structure "1^,2^"; splice_chain "69870924^,69870875^";
chr2	juncbase	alternative_acceptor	110920709	110922265	.	-	.	gene_id "alternative_acceptor.1100"; transcript_id "alternative_acceptor.1100"; gene_name "CUFF.336"; flanks "110920709-,110922265^"; structure "1-,2-"; splice_chain "110920712-,110920709-";
chr2	juncbase	cassette	175779786	175711685	.	-	.	gene_id "cassette.869"; transcript_id "cassette.869"; gene_name "CUFF.371"; flanks "175779786-,175711685^"; structure "0,1-2^"; splice_chain ",175742856-175742568^";
chr2	juncbase	jcn_only_AD	1263213	1271137	.	+	.	gene_id "jcn_only_AD.1880"; transcript_id "jcn_only_AD.1880"; gene_name "CUFF.195"; flanks "1263213-,1271137^"; structure "1^,2^"; splice_chain "1263213^,1266721^";
chr2	juncbase	alternative_acceptor	219457430	219458251	.	+	.	gene_id "alternative_acceptor.1101"; transcript_id "alternative_acceptor.1101"; gene_name "CUFF.403"; flanks "219457430-,219458251^"; structure "1-,2-"; splice_chain "219458251-,219458831-";
chr2	juncbase	alternative_acceptor	219457430	219458892	.	+	.	gene_id "alternative_acceptor.1102"; transcript_id "alternative_acceptor.1102"; gene_name "CUFF.403"; flanks "219457430-,219458892^"; structure "1-,2-"; splice_chain "219458831-,219458892-";
chr2	juncbase	cassette	177042439	177041420	.	-	.	gene_id "cassette.870"; transcript_id "cassette.870"; gene_name "CUFF.375"; flanks "177042439-,177041420^"; structure "0,1-2^"; splice_chain ",177042222-177042060^";
chr2	juncbase	intron_retention	118595560	118596783	.	+	.	gene_id "intron_retention.1166"; transcript_id "intron_retention.1166"; gene_name "CUFF.340"; flanks "118595560-,118596783^"; structure "0,1^2-"; splice_chain ",118595560^118596783-";
chr2	juncbase	jcn_only_AA	3447662	3461392	.	+	.	gene_id "jcn_only_AA.1441"; transcript_id "jcn_only_AA.1441"; gene_name "CUFF.198"; flanks "3447662-,3461392^"; structure "1-,2-"; splice_chain "3460921-,3461392-";
chr2	juncbase	intron_retention	242437031	242436793	.	-	.	gene_id "intron_retention.1167"; transcript_id "intron_retention.1167"; gene_name ""; flanks "242437031-,242436793^"; structure "0,1^2-"; splice_chain ",242437031^242436793-";
chr2	juncbase	jcn_only_AA	4009393	4021135	.	-	.	gene_id "jcn_only_AA.1442"; transcript_id "jcn_only_AA.1442"; gene_name "CUFF.202"; flanks "4009393-,4021135^"; structure "1-,2-"; splice_chain "4020664-,4009393-";
chr2	juncbase	jcn_only_AA	4015878	4021135	.	-	.	gene_id "jcn_only_AA.1443"; transcript_id "jcn_only_AA.1443"; gene_name "CUFF.202"; flanks "4015878-,4021135^"; structure "1-,2-"; splice_chain "4020664-,4015878-";
chr2	juncbase	jcn_only_AA	4009484	4021135	.	-	.	gene_id "jcn_only_AA.1444"; transcript_id "jcn_only_AA.1444"; gene_name "CUFF.202"; flanks "4009484-,4021135^"; structure "1-,2-"; splice_chain "4020664-,4009484-";
chr2	juncbase	jcn_only_AA	4020692	4021135	.	-	.	gene_id "jcn_only_AA.1445"; transcript_id "jcn_only_AA.1445"; gene_name "CUFF.202"; flanks "4020692-,4021135^"; structure "1-,2-"; splice_chain "4020692-,4020664-";
chr2	juncbase	jcn_only_AD	191362445	191364741	.	+	.	gene_id "jcn_only_AD.1881"; transcript_id "jcn_only_AD.1881"; gene_name "CUFF.384"; flanks "191362445-,191364741^"; structure "1^,2^"; splice_chain "191362445^,191364582^";
chr2	juncbase	jcn_only_AA	1168869	1215568	.	+	.	gene_id "jcn_only_AA.1446"; transcript_id "jcn_only_AA.1446"; gene_name ""; flanks "1168869-,1215568^"; structure "1-,2-"; splice_chain "1204789-,1215568-";
chr2	juncbase	alternative_donor	208030191	207989128	.	-	.	gene_id "alternative_donor.1600"; transcript_id "alternative_donor.1600"; gene_name "CUFF.396"; flanks "208030191-,207989128^"; structure "1^,2^"; splice_chain "208030191^,208013706^";
chr2	juncbase	alternative_donor	207998791	207989128	.	-	.	gene_id "alternative_donor.1601"; transcript_id "alternative_donor.1601"; gene_name "CUFF.396"; flanks "207998791-,207989128^"; structure "1^,2^"; splice_chain "208013706^,207998791^";
chr2	juncbase	alternative_donor	208031864	207989128	.	-	.	gene_id "alternative_donor.1602"; transcript_id "alternative_donor.1602"; gene_name "CUFF.396"; flanks "208031864-,207989128^"; structure "1^,2^"; splice_chain "208031864^,208013706^";
chr2	juncbase	alternative_donor	16535568	16573521	.	+	.	gene_id "alternative_donor.1603"; transcript_id "alternative_donor.1603"; gene_name "CUFF.214"; flanks "16535568-,16573521^"; structure "1^,2^"; splice_chain "16535568^,16536535^";
chr2	juncbase	intron_retention	27729446	27729655	.	+	.	gene_id "intron_retention.1168"; transcript_id "intron_retention.1168"; gene_name "CUFF.227"; flanks "27729446-,27729655^"; structure "0,1^2-"; splice_chain ",27729446^27729655-";
chr2	juncbase	intron_retention	220097913	220098008	.	+	.	gene_id "intron_retention.1169"; transcript_id "intron_retention.1169"; gene_name "CUFF.409"; flanks "220097913-,220098008^"; structure "0,1^2-"; splice_chain ",220097913^220098008-";
chr2	juncbase	intron_retention	99232809	99232895	.	+	.	gene_id "intron_retention.1170"; transcript_id "intron_retention.1170"; gene_name ""; flanks "99232809-,99232895^"; structure "0,1^2-"; splice_chain ",99232809^99232895-";
chr2	juncbase	jcn_only_AA	38231359	38244329	.	+	.	gene_id "jcn_only_AA.1447"; transcript_id "jcn_only_AA.1447"; gene_name "CUFF.269"; flanks "38231359-,38244329^"; structure "1-,2-"; splice_chain "38244329-,38294125-";
chr2	juncbase	jcn_only_AA	38231359	38239746	.	+	.	gene_id "jcn_only_AA.1448"; transcript_id "jcn_only_AA.1448"; gene_name "CUFF.269"; flanks "38231359-,38239746^"; structure "1-,2-"; splice_chain "38239746-,38294125-";
chr2	juncbase	alternative_donor	31414265	31412344	.	-	.	gene_id "alternative_donor.1604"; transcript_id "alternative_donor.1604"; gene_name "CUFF.231"; flanks "31414265-,31412344^"; structure "1^,2^"; splice_chain "31414265^,31412533^";
chr2	juncbase	jcn_only_AA	220095072	220096982	.	+	.	gene_id "jcn_only_AA.1449"; transcript_id "jcn_only_AA.1449"; gene_name ""; flanks "220095072-,220096982^"; structure "1-,2-"; splice_chain "220096650-,220096982-";
chr2	juncbase	jcn_only_AD	69870707	69870406	.	-	.	gene_id "jcn_only_AD.1882"; transcript_id "jcn_only_AD.1882"; gene_name "CUFF.294"; flanks "69870707-,69870406^"; structure "1^,2^"; splice_chain "69901155^,69870707^";
chr2	juncbase	jcn_only_AD	69870924	69870406	.	-	.	gene_id "jcn_only_AD.1883"; transcript_id "jcn_only_AD.1883"; gene_name "CUFF.294"; flanks "69870924-,69870406^"; structure "1^,2^"; splice_chain "69901155^,69870924^";
chr2	juncbase	jcn_only_AD	69870875	69870406	.	-	.	gene_id "jcn_only_AD.1884"; transcript_id "jcn_only_AD.1884"; gene_name "CUFF.294"; flanks "69870875-,69870406^"; structure "1^,2^"; splice_chain "69901155^,69870875^";
chr2	juncbase	alternative_acceptor	27708370	27712482	.	-	.	gene_id "alternative_acceptor.1103"; transcript_id "alternative_acceptor.1103"; gene_name "CUFF.226"; flanks "27708370-,27712482^"; structure "1-,2-"; splice_chain "27709109-,27708370-";
chr2	juncbase	cassette	4007506	4006531	.	-	.	gene_id "cassette.871"; transcript_id "cassette.871"; gene_name "CUFF.202"; flanks "4007506-,4006531^"; structure "0,1-2^"; splice_chain ",4007364-4007154^";
chr2	juncbase	alternative_acceptor	169826725	169828357	.	-	.	gene_id "alternative_acceptor.1104"; transcript_id "alternative_acceptor.1104"; gene_name "CUFF.355"; flanks "169826725-,169828357^"; structure "1-,2-"; splice_chain "169826866-,169826725-";
chr2	juncbase	alternative_donor	86847453	86839397	.	-	.	gene_id "alternative_donor.1605"; transcript_id "alternative_donor.1605"; gene_name "CUFF.309"; flanks "86847453-,86839397^"; structure "1^,2^"; splice_chain "86847453^,86842278^";
chr2	juncbase	alternative_donor	68384393	68374699	.	-	.	gene_id "alternative_donor.1606"; transcript_id "alternative_donor.1606"; gene_name "CUFF.287"; flanks "68384393-,68374699^"; structure "1^,2^"; splice_chain "68384393^,68384059^";
chr2	juncbase	alternative_donor	68384506	68374699	.	-	.	gene_id "alternative_donor.1607"; transcript_id "alternative_donor.1607"; gene_name "CUFF.287"; flanks "68384506-,68374699^"; structure "1^,2^"; splice_chain "68384506^,68384059^";
chr2	juncbase	jcn_only_AA	169826725	169828357	.	-	.	gene_id "jcn_only_AA.1450"; transcript_id "jcn_only_AA.1450"; gene_name "CUFF.355"; flanks "169826725-,169828357^"; structure "1-,2-"; splice_chain "169826866-,169826725-";
chr2	juncbase	alternative_acceptor	73269714	73285657	.	-	.	gene_id "alternative_acceptor.1105"; transcript_id "alternative_acceptor.1105"; gene_name "CUFF.297"; flanks "73269714-,73285657^"; structure "1-,2-"; splice_chain "73280680-,73269714-";
chr2	juncbase	alternative_acceptor	73277028	73285657	.	-	.	gene_id "alternative_acceptor.1106"; transcript_id "alternative_acceptor.1106"; gene_name "CUFF.297"; flanks "73277028-,73285657^"; structure "1-,2-"; splice_chain "73280680-,73277028-";
chr2	juncbase	alternative_acceptor	73268790	73285657	.	-	.	gene_id "alternative_acceptor.1107"; transcript_id "alternative_acceptor.1107"; gene_name "CUFF.297"; flanks "73268790-,73285657^"; structure "1-,2-"; splice_chain "73280680-,73268790-";
chr2	juncbase	alternative_acceptor	73268060	73285657	.	-	.	gene_id "alternative_acceptor.1108"; transcript_id "alternative_acceptor.1108"; gene_name "CUFF.297"; flanks "73268060-,73285657^"; structure "1-,2-"; splice_chain "73280680-,73268060-";
chr2	juncbase	intron_retention	27730178	27730548	.	+	.	gene_id "intron_retention.1171"; transcript_id "intron_retention.1171"; gene_name "CUFF.227"; flanks "27730178-,27730548^"; structure "0,1^2-"; splice_chain ",27730178^27730548-";
chr2	juncbase	intron_retention	242610840	242611606	.	+	.	gene_id "intron_retention.1172"; transcript_id "intron_retention.1172"; gene_name "CUFF.422"; flanks "242610840-,242611606^"; structure "0,1^2-"; splice_chain ",242610840^242611606-";
chr2	juncbase	cassette	86400773	86397964	.	-	.	gene_id "cassette.872"; transcript_id "cassette.872"; gene_name "CUFF.307"; flanks "86400773-,86397964^"; structure "0,1-2^"; splice_chain ",86398435-86398331^";
chr2	juncbase	intron_retention	220094680	220094950	.	+	.	gene_id "intron_retention.1173"; transcript_id "intron_retention.1173"; gene_name ""; flanks "220094680-,220094950^"; structure "0,1^2-"; splice_chain ",220094680^220094950-";
chr2	juncbase	cassette	677289	675630	.	-	.	gene_id "cassette.873"; transcript_id "cassette.873"; gene_name "CUFF.193"; flanks "677289-,675630^"; structure "0,1-2^"; splice_chain ",676238-675758^";
chr2	juncbase	cassette	676574	675630	.	-	.	gene_id "cassette.874"; transcript_id "cassette.874"; gene_name "CUFF.193"; flanks "676574-,675630^"; structure "0,1-2^"; splice_chain ",676238-675758^";
chr2	juncbase	alternative_donor	69870707	69870406	.	-	.	gene_id "alternative_donor.1608"; transcript_id "alternative_donor.1608"; gene_name "CUFF.294"; flanks "69870707-,69870406^"; structure "1^,2^"; splice_chain "69901155^,69870707^";
chr2	juncbase	alternative_donor	69870924	69870406	.	-	.	gene_id "alternative_donor.1609"; transcript_id "alternative_donor.1609"; gene_name "CUFF.294"; flanks "69870924-,69870406^"; structure "1^,2^"; splice_chain "69901155^,69870924^";
chr2	juncbase	alternative_donor	69870875	69870406	.	-	.	gene_id "alternative_donor.1610"; transcript_id "alternative_donor.1610"; gene_name "CUFF.294"; flanks "69870875-,69870406^"; structure "1^,2^"; splice_chain "69901155^,69870875^";
chr2	juncbase	jcn_only_AD	200472850	200493787	.	+	.	gene_id "jcn_only_AD.1885"; transcript_id "jcn_only_AD.1885"; gene_name "CUFF.389"; flanks "200472850-,200493787^"; structure "1^,2^"; splice_chain "200472850^,200489319^";
chr2	juncbase	intron_retention	219222457	219222709	.	+	.	gene_id "intron_retention.1174"; transcript_id "intron_retention.1174"; gene_name "CUFF.402"; flanks "219222457-,219222709^"; structure "0,1^2-"; splice_chain ",219222457^219222709-";
chr2	juncbase	jcn_only_AD	110922265	110920709	.	-	.	gene_id "jcn_only_AD.1886"; transcript_id "jcn_only_AD.1886"; gene_name "CUFF.274,CUFF.336"; flanks "110922265-,110920709^"; structure "1^,2^"; splice_chain "110922265^,110922097^";
chr2	juncbase	jcn_only_AA	204354809	204355937	.	-	.	gene_id "jcn_only_AA.1451"; transcript_id "jcn_only_AA.1451"; gene_name "CUFF.392"; flanks "204354809-,204355937^"; structure "1-,2-"; splice_chain "204354812-,204354809-";
chr2	juncbase	intron_retention	219222457	219222760	.	+	.	gene_id "intron_retention.1175"; transcript_id "intron_retention.1175"; gene_name "CUFF.402"; flanks "219222457-,219222760^"; structure "0,1^2-"; splice_chain ",219222457^219222760-";
chr2	juncbase	jcn_only_AA	231191	234160	.	-	.	gene_id "jcn_only_AA.1452"; transcript_id "jcn_only_AA.1452"; gene_name "CUFF.190"; flanks "231191-,234160^"; structure "1-,2-"; splice_chain "233229-,231191-";
chr2	juncbase	cassette	4007154	4006531	.	-	.	gene_id "cassette.875"; transcript_id "cassette.875"; gene_name "CUFF.202"; flanks "4007154-,4006531^"; structure "0,1-2^"; splice_chain ",4006985-4006842^";
chr2	juncbase	alternative_donor	207988498	207953305	.	-	.	gene_id "alternative_donor.1611"; transcript_id "alternative_donor.1611"; gene_name "CUFF.396"; flanks "207988498-,207953305^"; structure "1^,2^"; splice_chain "207989068^,207988498^";
chr2	juncbase	alternative_donor	207988700	207953305	.	-	.	gene_id "alternative_donor.1612"; transcript_id "alternative_donor.1612"; gene_name "CUFF.396"; flanks "207988700-,207953305^"; structure "1^,2^"; splice_chain "207989068^,207988700^";
chr2	juncbase	intron_retention	220094622	220094950	.	+	.	gene_id "intron_retention.1176"; transcript_id "intron_retention.1176"; gene_name ""; flanks "220094622-,220094950^"; structure "0,1^2-"; splice_chain ",220094622^220094950-";
chr2	juncbase	jcn_only_AA	33477911	33482510	.	+	.	gene_id "jcn_only_AA.1453"; transcript_id "jcn_only_AA.1453"; gene_name "CUFF.249"; flanks "33477911-,33482510^"; structure "1-,2-"; splice_chain "33482435-,33482510-";
chr2	juncbase	jcn_only_AA	33477911	33482351	.	+	.	gene_id "jcn_only_AA.1454"; transcript_id "jcn_only_AA.1454"; gene_name "CUFF.249"; flanks "33477911-,33482351^"; structure "1-,2-"; splice_chain "33482351-,33482435-";
chr2	juncbase	jcn_only_AA	242435949	242437031	.	-	.	gene_id "jcn_only_AA.1455"; transcript_id "jcn_only_AA.1455"; gene_name "CUFF.421"; flanks "242435949-,242437031^"; structure "1-,2-"; splice_chain "242436793-,242435949-";
chr2	juncbase	alternative_acceptor	110920709	110922097	.	-	.	gene_id "alternative_acceptor.1109"; transcript_id "alternative_acceptor.1109"; gene_name "CUFF.336"; flanks "110920709-,110922097^"; structure "1-,2-"; splice_chain "110920712-,110920709-";
chr2	juncbase	jcn_only_AD	73228658	73227616	.	-	.	gene_id "jcn_only_AD.1887"; transcript_id "jcn_only_AD.1887"; gene_name "CUFF.297"; flanks "73228658-,73227616^"; structure "1^,2^"; splice_chain "73228658^,73228654^";
chr2	juncbase	alternative_acceptor	3461464	3464034	.	+	.	gene_id "alternative_acceptor.1110"; transcript_id "alternative_acceptor.1110"; gene_name "CUFF.198,CUFF.380"; flanks "3461464-,3464034^"; structure "1-,2-"; splice_chain "3461566-,3464034-";
chr2	juncbase	alternative_donor	109065736	109066089	.	+	.	gene_id "alternative_donor.1613"; transcript_id "alternative_donor.1613"; gene_name "CUFF.333"; flanks "109065736-,109066089^"; structure "1^,2^"; splice_chain "109065736^,109065745^";
chr2	juncbase	alternative_donor	171376050	171399416	.	+	.	gene_id "alternative_donor.1614"; transcript_id "alternative_donor.1614"; gene_name "CUFF.360"; flanks "171376050-,171399416^"; structure "1^,2^"; splice_chain "171376050^,171381136^";
chr2	juncbase	jcn_only_AD	31414265	31412344	.	-	.	gene_id "jcn_only_AD.1888"; transcript_id "jcn_only_AD.1888"; gene_name "CUFF.231"; flanks "31414265-,31412344^"; structure "1^,2^"; splice_chain "31414265^,31412533^";
chr2	juncbase	intron_retention	175243651	175216453	.	-	.	gene_id "intron_retention.1177"; transcript_id "intron_retention.1177"; gene_name "CUFF.370"; flanks "175243651-,175216453^"; structure "0,1^2-"; splice_chain ",175243651^175216453-";
chr2	juncbase	jcn_only_AA	232258621	232259492	.	+	.	gene_id "jcn_only_AA.1456"; transcript_id "jcn_only_AA.1456"; gene_name "CUFF.413"; flanks "232258621-,232259492^"; structure "1-,2-"; splice_chain "232259366-,232259492-";
chr2	juncbase	intron_retention	219457430	219458892	.	+	.	gene_id "intron_retention.1178"; transcript_id "intron_retention.1178"; gene_name "CUFF.403"; flanks "219457430-,219458892^"; structure "0,1^2-"; splice_chain ",219457430^219458892-";
chr2	juncbase	intron_retention	242440893	242440262	.	-	.	gene_id "intron_retention.1179"; transcript_id "intron_retention.1179"; gene_name ""; flanks "242440893-,242440262^"; structure "0,1^2-"; splice_chain ",242440893^242440262-";
chr2	juncbase	jcn_only_AA	174057784	174072275	.	-	.	gene_id "jcn_only_AA.1457"; transcript_id "jcn_only_AA.1457"; gene_name "CUFF.364"; flanks "174057784-,174072275^"; structure "1-,2-"; splice_chain "174063552-,174057784-";
chr2	juncbase	alternative_donor	153476232	153481952	.	+	.	gene_id "alternative_donor.1615"; transcript_id "alternative_donor.1615"; gene_name "CUFF.347"; flanks "153476232-,153481952^"; structure "1^,2^"; splice_chain "153476232^,153479071^";
chr2	juncbase	jcn_only_AA	110881640	110883214	.	-	.	gene_id "jcn_only_AA.1458"; transcript_id "jcn_only_AA.1458"; gene_name "CUFF.336"; flanks "110881640-,110883214^"; structure "1-,2-"; splice_chain "110882900-,110881640-";
chr2	juncbase	jcn_only_AA	219222457	219222760	.	+	.	gene_id "jcn_only_AA.1459"; transcript_id "jcn_only_AA.1459"; gene_name "CUFF.402"; flanks "219222457-,219222760^"; structure "1-,2-"; splice_chain "219222709-,219222760-";
chr2	juncbase	jcn_only_AA	109102364	109102967	.	+	.	gene_id "jcn_only_AA.1460"; transcript_id "jcn_only_AA.1460"; gene_name "CUFF.333"; flanks "109102364-,109102967^"; structure "1-,2-"; splice_chain "109102891-,109102967-";
chr2	juncbase	jcn_only_AA	231934882	231937047	.	+	.	gene_id "jcn_only_AA.1461"; transcript_id "jcn_only_AA.1461"; gene_name ""; flanks "231934882-,231937047^"; structure "1-,2-"; splice_chain "231936903-,231937047-";
chr2	juncbase	alternative_donor	38224657	38231134	.	+	.	gene_id "alternative_donor.1616"; transcript_id "alternative_donor.1616"; gene_name "CUFF.269"; flanks "38224657-,38231134^"; structure "1^,2^"; splice_chain "38224657^,38230169^";
chr2	juncbase	intron_retention	110922265	110920712	.	-	.	gene_id "intron_retention.1180"; transcript_id "intron_retention.1180"; gene_name ""; flanks "110922265-,110920712^"; structure "0,1^2-"; splice_chain ",110922265^110920712-";
chr2	juncbase	cassette	86398331	86393767	.	-	.	gene_id "cassette.876"; transcript_id "cassette.876"; gene_name "CUFF.307"; flanks "86398331-,86393767^"; structure "0,1-2^"; splice_chain ",86397964-86397872^";
chr2	juncbase	alternative_donor	101436876	101521195	.	+	.	gene_id "alternative_donor.1617"; transcript_id "alternative_donor.1617"; gene_name "CUFF.323"; flanks "101436876-,101521195^"; structure "1^,2^"; splice_chain "101436876^,101437661^";
chr2	juncbase	intron_retention	263564	263372	.	-	.	gene_id "intron_retention.1181"; transcript_id "intron_retention.1181"; gene_name ""; flanks "263564-,263372^"; structure "0,1^2-"; splice_chain ",263564^263372-";
chr2	juncbase	intron_retention	220098155	220098437	.	+	.	gene_id "intron_retention.1182"; transcript_id "intron_retention.1182"; gene_name "CUFF.409"; flanks "220098155-,220098437^"; structure "0,1^2-"; splice_chain ",220098155^220098437-";
chr2	juncbase	jcn_only_AD	88926485	88913371	.	-	.	gene_id "jcn_only_AD.1889"; transcript_id "jcn_only_AD.1889"; gene_name ""; flanks "88926485-,88913371^"; structure "1^,2^"; splice_chain "88926485^,88924264^";
chr2	juncbase	intron_retention	242594758	242606060	.	+	.	gene_id "intron_retention.1183"; transcript_id "intron_retention.1183"; gene_name ""; flanks "242594758-,242606060^"; structure "0,1^2-"; splice_chain ",242594758^242606060-";
chr2	juncbase	intron_retention	233101	231191	.	-	.	gene_id "intron_retention.1184"; transcript_id "intron_retention.1184"; gene_name "CUFF.190"; flanks "233101-,231191^"; structure "0,1^2-"; splice_chain ",233101^231191-";
chr2	juncbase	cassette	73195577	73172228	.	-	.	gene_id "cassette.877"; transcript_id "cassette.877"; gene_name "CUFF.297"; flanks "73195577-,73172228^"; structure "0,1-2^"; splice_chain ",73188377-73188260^";
chr2	juncbase	jcn_only_AD	207989068	207953305	.	-	.	gene_id "jcn_only_AD.1890"; transcript_id "jcn_only_AD.1890"; gene_name "CUFF.396"; flanks "207989068-,207953305^"; structure "1^,2^"; splice_chain "207989068^,207988498^";
chr2	juncbase	jcn_only_AD	207988700	207953305	.	-	.	gene_id "jcn_only_AD.1891"; transcript_id "jcn_only_AD.1891"; gene_name "CUFF.396"; flanks "207988700-,207953305^"; structure "1^,2^"; splice_chain "207988700^,207988498^";
chr2	juncbase	alternative_donor	88926485	88913371	.	-	.	gene_id "alternative_donor.1618"; transcript_id "alternative_donor.1618"; gene_name ""; flanks "88926485-,88913371^"; structure "1^,2^"; splice_chain "88926485^,88924264^";
chr2	juncbase	jcn_only_AA	73269714	73285657	.	-	.	gene_id "jcn_only_AA.1462"; transcript_id "jcn_only_AA.1462"; gene_name "CUFF.297"; flanks "73269714-,73285657^"; structure "1-,2-"; splice_chain "73280680-,73269714-";
chr2	juncbase	jcn_only_AA	73277028	73285657	.	-	.	gene_id "jcn_only_AA.1463"; transcript_id "jcn_only_AA.1463"; gene_name "CUFF.297"; flanks "73277028-,73285657^"; structure "1-,2-"; splice_chain "73280680-,73277028-";
chr2	juncbase	jcn_only_AA	73268790	73285657	.	-	.	gene_id "jcn_only_AA.1464"; transcript_id "jcn_only_AA.1464"; gene_name "CUFF.297"; flanks "73268790-,73285657^"; structure "1-,2-"; splice_chain "73280680-,73268790-";
chr2	juncbase	jcn_only_AA	73268060	73285657	.	-	.	gene_id "jcn_only_AA.1465"; transcript_id "jcn_only_AA.1465"; gene_name "CUFF.297"; flanks "73268060-,73285657^"; structure "1-,2-"; splice_chain "73280680-,73268060-";
chr2	juncbase	jcn_only_AA	219457430	219458892	.	+	.	gene_id "jcn_only_AA.1466"; transcript_id "jcn_only_AA.1466"; gene_name "CUFF.403"; flanks "219457430-,219458892^"; structure "1-,2-"; splice_chain "219458251-,219458892-";
chr2	juncbase	jcn_only_AA	219457430	219458831	.	+	.	gene_id "jcn_only_AA.1467"; transcript_id "jcn_only_AA.1467"; gene_name "CUFF.403"; flanks "219457430-,219458831^"; structure "1-,2-"; splice_chain "219458251-,219458831-";
chr2	juncbase	jcn_only_AA	4020664	4021135	.	-	.	gene_id "jcn_only_AA.1468"; transcript_id "jcn_only_AA.1468"; gene_name "CUFF.202"; flanks "4020664-,4021135^"; structure "1-,2-"; splice_chain "4020664-,4009484-";
chr2	juncbase	jcn_only_AA	4009393	4021135	.	-	.	gene_id "jcn_only_AA.1469"; transcript_id "jcn_only_AA.1469"; gene_name "CUFF.202"; flanks "4009393-,4021135^"; structure "1-,2-"; splice_chain "4009484-,4009393-";
chr2	juncbase	jcn_only_AA	4015878	4021135	.	-	.	gene_id "jcn_only_AA.1470"; transcript_id "jcn_only_AA.1470"; gene_name "CUFF.202"; flanks "4015878-,4021135^"; structure "1-,2-"; splice_chain "4015878-,4009484-";
chr2	juncbase	jcn_only_AA	4020692	4021135	.	-	.	gene_id "jcn_only_AA.1471"; transcript_id "jcn_only_AA.1471"; gene_name "CUFF.202"; flanks "4020692-,4021135^"; structure "1-,2-"; splice_chain "4020692-,4009484-";
chr2	juncbase	jcn_only_AA	1243548	1251099	.	+	.	gene_id "jcn_only_AA.1472"; transcript_id "jcn_only_AA.1472"; gene_name "CUFF.195"; flanks "1243548-,1251099^"; structure "1-,2-"; splice_chain "1246510-,1251099-";
chr2	juncbase	alternative_acceptor	171264354	171300477	.	+	.	gene_id "alternative_acceptor.1111"; transcript_id "alternative_acceptor.1111"; gene_name "CUFF.360"; flanks "171264354-,171300477^"; structure "1-,2-"; splice_chain "171268211-,171300477-";
chr2	juncbase	intron_retention	262631	260702	.	-	.	gene_id "intron_retention.1185"; transcript_id "intron_retention.1185"; gene_name "CUFF.190"; flanks "262631-,260702^"; structure "0,1^2-"; splice_chain ",262631^260702-";
chr2	juncbase	alternative_donor	3461464	3464034	.	+	.	gene_id "alternative_donor.1619"; transcript_id "alternative_donor.1619"; gene_name "CUFF.198"; flanks "3461464-,3464034^"; structure "1^,2^"; splice_chain "3461464^,3462232^";
chr2	juncbase	cassette	160619504	160623795	.	+	.	gene_id "cassette.878"; transcript_id "cassette.878"; gene_name "CUFF.350"; flanks "160619504-,160623795^"; structure "0,1-2^"; splice_chain ",160621137-160621185^";
chr2	juncbase	jcn_only_AD	101549463	101554215	.	+	.	gene_id "jcn_only_AD.1892"; transcript_id "jcn_only_AD.1892"; gene_name "CUFF.323"; flanks "101549463-,101554215^"; structure "1^,2^"; splice_chain "101549463^,101550622^";
chr2	juncbase	intron_retention	262631	260897	.	-	.	gene_id "intron_retention.1186"; transcript_id "intron_retention.1186"; gene_name ""; flanks "262631-,260897^"; structure "0,1^2-"; splice_chain ",262631^260897-";
chr2	juncbase	intron_retention	175712041	175711685	.	-	.	gene_id "intron_retention.1187"; transcript_id "intron_retention.1187"; gene_name ""; flanks "175712041-,175711685^"; structure "0,1^2-"; splice_chain ",175712041^175711685-";
chr2	juncbase	jcn_only_AD	16573594	16613773	.	+	.	gene_id "jcn_only_AD.1893"; transcript_id "jcn_only_AD.1893"; gene_name "CUFF.214"; flanks "16573594-,16613773^"; structure "1^,2^"; splice_chain "16573594^,16613075^";
chr2	juncbase	jcn_only_AD	101565942	101584743	.	+	.	gene_id "jcn_only_AD.1894"; transcript_id "jcn_only_AD.1894"; gene_name "CUFF.323"; flanks "101565942-,101584743^"; structure "1^,2^"; splice_chain "101565942^,101582228^";
chr2	juncbase	intron_retention	242447920	242441123	.	-	.	gene_id "intron_retention.1188"; transcript_id "intron_retention.1188"; gene_name ""; flanks "242447920-,242441123^"; structure "0,1^2-"; splice_chain ",242447920^242441123-";
chr2	juncbase	jcn_only_AA	27670501	27670679	.	-	.	gene_id "jcn_only_AA.1473"; transcript_id "jcn_only_AA.1473"; gene_name "CUFF.226"; flanks "27670501-,27670679^"; structure "1-,2-"; splice_chain "27670524-,27670501-";
chr2	juncbase	alternative_acceptor	241404163	241404273	.	+	.	gene_id "alternative_acceptor.1112"; transcript_id "alternative_acceptor.1112"; gene_name "CUFF.418"; flanks "241404163-,241404273^"; structure "1-,2-"; splice_chain "241404252-,241404273-";
chr2	juncbase	cassette	31425000	31423491	.	-	.	gene_id "cassette.879"; transcript_id "cassette.879"; gene_name "CUFF.231"; flanks "31425000-,31423491^"; structure "0,1-2^"; splice_chain ",31424864-31424728^";
chr2	juncbase	intron_retention	61721029	61720188	.	-	.	gene_id "intron_retention.1189"; transcript_id "intron_retention.1189"; gene_name "CUFF.283"; flanks "61721029-,61720188^"; structure "0,1^2-"; splice_chain ",61721029^61720188-";
chr2	juncbase	intron_retention	242440893	242440211	.	-	.	gene_id "intron_retention.1190"; transcript_id "intron_retention.1190"; gene_name ""; flanks "242440893-,242440211^"; structure "0,1^2-"; splice_chain ",242440893^242440211-";
chr2	juncbase	alternative_acceptor	242435949	242437031	.	-	.	gene_id "alternative_acceptor.1113"; transcript_id "alternative_acceptor.1113"; gene_name "CUFF.421"; flanks "242435949-,242437031^"; structure "1-,2-"; splice_chain "242436793-,242435949-";
chr2	juncbase	cassette	242594062	242606060	.	+	.	gene_id "cassette.880"; transcript_id "cassette.880"; gene_name "CUFF.422"; flanks "242594062-,242606060^"; structure "0,1-2^"; splice_chain ",242598523-242598602^";
chr2	juncbase	cassette	242594758	242606060	.	+	.	gene_id "cassette.881"; transcript_id "cassette.881"; gene_name "CUFF.422"; flanks "242594758-,242606060^"; structure "0,1-2^"; splice_chain ",242598523-242598602^";
chr2	juncbase	alternative_acceptor	86831601	86839282	.	-	.	gene_id "alternative_acceptor.1114"; transcript_id "alternative_acceptor.1114"; gene_name "CUFF.309"; flanks "86831601-,86839282^"; structure "1-,2-"; splice_chain "86832541-,86831601-";
chr2	juncbase	alternative_donor	38231359	38244329	.	+	.	gene_id "alternative_donor.1620"; transcript_id "alternative_donor.1620"; gene_name "CUFF.269"; flanks "38231359-,38244329^"; structure "1^,2^"; splice_chain "38231359^,38239792^";
chr2	juncbase	cassette	247538	242871	.	-	.	gene_id "cassette.882"; transcript_id "cassette.882"; gene_name "CUFF.190"; flanks "247538-,242871^"; structure "0,1-2^"; splice_chain ",243562-243503^";
chr2	juncbase	cassette	247538	234272	.	-	.	gene_id "cassette.883"; transcript_id "cassette.883"; gene_name "CUFF.190"; flanks "247538-,234272^"; structure "0,1-2^"; splice_chain ",243562-243503^";
chr2	juncbase	jcn_only_AA	110920709	110922097	.	-	.	gene_id "jcn_only_AA.1474"; transcript_id "jcn_only_AA.1474"; gene_name "CUFF.336"; flanks "110920709-,110922097^"; structure "1-,2-"; splice_chain "110920712-,110920709-";
chr2	juncbase	jcn_only_AD	234160	231191	.	-	.	gene_id "jcn_only_AD.1895"; transcript_id "jcn_only_AD.1895"; gene_name "CUFF.190"; flanks "234160-,231191^"; structure "1^,2^"; splice_chain "234160^,233101^";
chr2	juncbase	jcn_only_AA	242440334	242440893	.	-	.	gene_id "jcn_only_AA.1475"; transcript_id "jcn_only_AA.1475"; gene_name ""; flanks "242440334-,242440893^"; structure "1-,2-"; splice_chain "242440492-,242440334-";
chr2	juncbase	jcn_only_AA	242440262	242440893	.	-	.	gene_id "jcn_only_AA.1476"; transcript_id "jcn_only_AA.1476"; gene_name ""; flanks "242440262-,242440893^"; structure "1-,2-"; splice_chain "242440492-,242440262-";
chr2	juncbase	cassette	169711970	169713200	.	+	.	gene_id "cassette.884"; transcript_id "cassette.884"; gene_name "CUFF.354"; flanks "169711970-,169713200^"; structure "0,1-2^"; splice_chain ",169712396-169712720^";
chr2	juncbase	jcn_only_AA	1251215	1263142	.	+	.	gene_id "jcn_only_AA.1477"; transcript_id "jcn_only_AA.1477"; gene_name "CUFF.195,CUFF.249"; flanks "1251215-,1263142^"; structure "1-,2-"; splice_chain "1260177-,1263142-";
chr2	juncbase	jcn_only_AA	109089355	109091991	.	+	.	gene_id "jcn_only_AA.1478"; transcript_id "jcn_only_AA.1478"; gene_name "CUFF.269,CUFF.333"; flanks "109089355-,109091991^"; structure "1-,2-"; splice_chain "109091245-,109091991-";
chr2	juncbase	jcn_only_AA	73280680	73285657	.	-	.	gene_id "jcn_only_AA.1479"; transcript_id "jcn_only_AA.1479"; gene_name "CUFF.297"; flanks "73280680-,73285657^"; structure "1-,2-"; splice_chain "73280680-,73277028-";
chr2	juncbase	jcn_only_AA	73269714	73285657	.	-	.	gene_id "jcn_only_AA.1480"; transcript_id "jcn_only_AA.1480"; gene_name "CUFF.297"; flanks "73269714-,73285657^"; structure "1-,2-"; splice_chain "73277028-,73269714-";
chr2	juncbase	jcn_only_AA	73268790	73285657	.	-	.	gene_id "jcn_only_AA.1481"; transcript_id "jcn_only_AA.1481"; gene_name "CUFF.297"; flanks "73268790-,73285657^"; structure "1-,2-"; splice_chain "73277028-,73268790-";
chr2	juncbase	jcn_only_AA	73268060	73285657	.	-	.	gene_id "jcn_only_AA.1482"; transcript_id "jcn_only_AA.1482"; gene_name "CUFF.297"; flanks "73268060-,73285657^"; structure "1-,2-"; splice_chain "73277028-,73268060-";
chr2	juncbase	intron_retention	676574	675630	.	-	.	gene_id "intron_retention.1191"; transcript_id "intron_retention.1191"; gene_name "CUFF.193"; flanks "676574-,675630^"; structure "0,1^2-"; splice_chain ",676574^675630-";
chr2	juncbase	cassette	73297589	73268060	.	-	.	gene_id "cassette.885"; transcript_id "cassette.885"; gene_name "CUFF.297"; flanks "73297589-,73268060^"; structure "0,1-2^"; splice_chain ",73285725-73285657^";
chr2	juncbase	jcn_only_AD	68384393	68374699	.	-	.	gene_id "jcn_only_AD.1896"; transcript_id "jcn_only_AD.1896"; gene_name "CUFF.287"; flanks "68384393-,68374699^"; structure "1^,2^"; splice_chain "68384393^,68384059^";
chr2	juncbase	jcn_only_AD	68384506	68374699	.	-	.	gene_id "jcn_only_AD.1897"; transcript_id "jcn_only_AD.1897"; gene_name "CUFF.287"; flanks "68384506-,68374699^"; structure "1^,2^"; splice_chain "68384506^,68384059^";
chr2	juncbase	intron_retention	242610820	242611606	.	+	.	gene_id "intron_retention.1192"; transcript_id "intron_retention.1192"; gene_name ""; flanks "242610820-,242611606^"; structure "0,1^2-"; splice_chain ",242610820^242611606-";
chr2	juncbase	alternative_acceptor	33477911	33482435	.	+	.	gene_id "alternative_acceptor.1115"; transcript_id "alternative_acceptor.1115"; gene_name "CUFF.194"; flanks "33477911-,33482435^"; structure "1-,2-"; splice_chain "33482351-,33482435-";
chr2	juncbase	alternative_acceptor	33477911	33482510	.	+	.	gene_id "alternative_acceptor.1116"; transcript_id "alternative_acceptor.1116"; gene_name "CUFF.194"; flanks "33477911-,33482510^"; structure "1-,2-"; splice_chain "33482351-,33482510-";
chr2	juncbase	alternative_donor	3453248	3461392	.	+	.	gene_id "alternative_donor.1621"; transcript_id "alternative_donor.1621"; gene_name "CUFF.198"; flanks "3453248-,3461392^"; structure "1^,2^"; splice_chain "3453248^,3461000^";
chr2	juncbase	alternative_donor	3447662	3461392	.	+	.	gene_id "alternative_donor.1622"; transcript_id "alternative_donor.1622"; gene_name "CUFF.198"; flanks "3447662-,3461392^"; structure "1^,2^"; splice_chain "3447662^,3461000^";
chr2	juncbase	alternative_donor	229966	219001	.	-	.	gene_id "alternative_donor.1623"; transcript_id "alternative_donor.1623"; gene_name "CUFF.190"; flanks "229966-,219001^"; structure "1^,2^"; splice_chain "229966^,224864^";
chr2	juncbase	jcn_only_AD	175712041	175711685	.	-	.	gene_id "jcn_only_AD.1898"; transcript_id "jcn_only_AD.1898"; gene_name ""; flanks "175712041-,175711685^"; structure "1^,2^"; splice_chain "175740516^,175712041^";
chr2	juncbase	jcn_only_AD	175712447	175711685	.	-	.	gene_id "jcn_only_AD.1899"; transcript_id "jcn_only_AD.1899"; gene_name ""; flanks "175712447-,175711685^"; structure "1^,2^"; splice_chain "175740516^,175712447^";
chr2	juncbase	cassette	11605898	11597359	.	-	.	gene_id "cassette.886"; transcript_id "cassette.886"; gene_name "CUFF.213"; flanks "11605898-,11597359^"; structure "0,1-2^"; splice_chain ",11598477-11598407^";
chr2	juncbase	cassette	219445463	219447694	.	+	.	gene_id "cassette.887"; transcript_id "cassette.887"; gene_name "CUFF.403"; flanks "219445463-,219447694^"; structure "0,1-2^"; splice_chain ",219445718-219445837^";
chr2	juncbase	alternative_donor	110922265	110920709	.	-	.	gene_id "alternative_donor.1624"; transcript_id "alternative_donor.1624"; gene_name "CUFF.274,CUFF.336"; flanks "110922265-,110920709^"; structure "1^,2^"; splice_chain "110922265^,110922097^";
chr2	juncbase	jcn_only_AA	27724096	27726381	.	+	.	gene_id "jcn_only_AA.1483"; transcript_id "jcn_only_AA.1483"; gene_name "CUFF.227"; flanks "27724096-,27726381^"; structure "1-,2-"; splice_chain "27724557-,27726381-";
chr2	juncbase	intron_retention	3469466	3481466	.	+	.	gene_id "intron_retention.1193"; transcript_id "intron_retention.1193"; gene_name ""; flanks "3469466-,3481466^"; structure "0,1^2-"; splice_chain ",3469466^3481466-";
chr2	juncbase	jcn_only_AD	242436715	242435949	.	-	.	gene_id "jcn_only_AD.1900"; transcript_id "jcn_only_AD.1900"; gene_name "CUFF.421"; flanks "242436715-,242435949^"; structure "1^,2^"; splice_chain "242436715^,242436597^";
chr2	juncbase	jcn_only_AD	242437031	242435949	.	-	.	gene_id "jcn_only_AD.1901"; transcript_id "jcn_only_AD.1901"; gene_name "CUFF.421"; flanks "242437031-,242435949^"; structure "1^,2^"; splice_chain "242437031^,242436597^";
chr2	juncbase	jcn_only_AD	86847453	86839397	.	-	.	gene_id "jcn_only_AD.1902"; transcript_id "jcn_only_AD.1902"; gene_name "CUFF.309"; flanks "86847453-,86839397^"; structure "1^,2^"; splice_chain "86847453^,86842278^";
chr2	juncbase	alternative_donor	69901155	69870406	.	-	.	gene_id "alternative_donor.1625"; transcript_id "alternative_donor.1625"; gene_name "CUFF.294"; flanks "69901155-,69870406^"; structure "1^,2^"; splice_chain "69901155^,69870924^";
chr2	juncbase	alternative_donor	69870707	69870406	.	-	.	gene_id "alternative_donor.1626"; transcript_id "alternative_donor.1626"; gene_name "CUFF.294"; flanks "69870707-,69870406^"; structure "1^,2^"; splice_chain "69870924^,69870707^";
chr2	juncbase	alternative_donor	69870875	69870406	.	-	.	gene_id "alternative_donor.1627"; transcript_id "alternative_donor.1627"; gene_name "CUFF.294"; flanks "69870875-,69870406^"; structure "1^,2^"; splice_chain "69870924^,69870875^";
chr2	juncbase	jcn_only_AD	171034799	171055718	.	+	.	gene_id "jcn_only_AD.1903"; transcript_id "jcn_only_AD.1903"; gene_name "CUFF.360"; flanks "171034799-,171055718^"; structure "1^,2^"; splice_chain "171034799^,171036691^";
chr2	juncbase	jcn_only_AD	208030191	207989128	.	-	.	gene_id "jcn_only_AD.1904"; transcript_id "jcn_only_AD.1904"; gene_name "CUFF.396"; flanks "208030191-,207989128^"; structure "1^,2^"; splice_chain "208030191^,208013706^";
chr2	juncbase	jcn_only_AD	207998791	207989128	.	-	.	gene_id "jcn_only_AD.1905"; transcript_id "jcn_only_AD.1905"; gene_name "CUFF.396"; flanks "207998791-,207989128^"; structure "1^,2^"; splice_chain "208013706^,207998791^";
chr2	juncbase	jcn_only_AD	208031864	207989128	.	-	.	gene_id "jcn_only_AD.1906"; transcript_id "jcn_only_AD.1906"; gene_name "CUFF.396"; flanks "208031864-,207989128^"; structure "1^,2^"; splice_chain "208031864^,208013706^";
chr2	juncbase	alternative_donor	61763845	61761038	.	-	.	gene_id "alternative_donor.1628"; transcript_id "alternative_donor.1628"; gene_name "CUFF.283"; flanks "61763845-,61761038^"; structure "1^,2^"; splice_chain "61763845^,61761558^";
chr2	juncbase	alternative_donor	61763337	61761038	.	-	.	gene_id "alternative_donor.1629"; transcript_id "alternative_donor.1629"; gene_name "CUFF.283"; flanks "61763337-,61761038^"; structure "1^,2^"; splice_chain "61763337^,61761558^";
chr2	juncbase	alternative_donor	61764697	61761038	.	-	.	gene_id "alternative_donor.1630"; transcript_id "alternative_donor.1630"; gene_name "CUFF.283"; flanks "61764697-,61761038^"; structure "1^,2^"; splice_chain "61764697^,61761558^";
chr2	juncbase	alternative_donor	61764154	61761038	.	-	.	gene_id "alternative_donor.1631"; transcript_id "alternative_donor.1631"; gene_name "CUFF.283"; flanks "61764154-,61761038^"; structure "1^,2^"; splice_chain "61764154^,61761558^";
chr2	juncbase	alternative_donor	61765627	61761038	.	-	.	gene_id "alternative_donor.1632"; transcript_id "alternative_donor.1632"; gene_name "CUFF.283"; flanks "61765627-,61761038^"; structure "1^,2^"; splice_chain "61765627^,61761558^";
chr2	juncbase	alternative_donor	61761693	61761038	.	-	.	gene_id "alternative_donor.1633"; transcript_id "alternative_donor.1633"; gene_name "CUFF.283"; flanks "61761693-,61761038^"; structure "1^,2^"; splice_chain "61761693^,61761558^";
chr2	juncbase	jcn_only_AA	99232996	99234631	.	+	.	gene_id "jcn_only_AA.1484"; transcript_id "jcn_only_AA.1484"; gene_name "CUFF.320"; flanks "99232996-,99234631^"; structure "1-,2-"; splice_chain "99234609-,99234631-";
chr2	juncbase	alternative_acceptor	174057784	174072275	.	-	.	gene_id "alternative_acceptor.1117"; transcript_id "alternative_acceptor.1117"; gene_name "CUFF.364"; flanks "174057784-,174072275^"; structure "1-,2-"; splice_chain "174063552-,174057784-";
chr2	juncbase	intron_retention	9244289	9244565	.	+	.	gene_id "intron_retention.1194"; transcript_id "intron_retention.1194"; gene_name "CUFF.210"; flanks "9244289-,9244565^"; structure "0,1^2-"; splice_chain ",9244289^9244565-";
chr2	juncbase	jcn_only_AD	191302287	191334484	.	+	.	gene_id "jcn_only_AD.1907"; transcript_id "jcn_only_AD.1907"; gene_name "CUFF.384"; flanks "191302287-,191334484^"; structure "1^,2^"; splice_chain "191302287^,191334375^";
chr2	juncbase	jcn_only_AD	191307731	191334484	.	+	.	gene_id "jcn_only_AD.1908"; transcript_id "jcn_only_AD.1908"; gene_name "CUFF.384"; flanks "191307731-,191334484^"; structure "1^,2^"; splice_chain "191307731^,191334375^";
chr2	juncbase	jcn_only_AA	73280680	73285657	.	-	.	gene_id "jcn_only_AA.1485"; transcript_id "jcn_only_AA.1485"; gene_name "CUFF.297"; flanks "73280680-,73285657^"; structure "1-,2-"; splice_chain "73280680-,73268790-";
chr2	juncbase	jcn_only_AA	73269714	73285657	.	-	.	gene_id "jcn_only_AA.1486"; transcript_id "jcn_only_AA.1486"; gene_name "CUFF.297"; flanks "73269714-,73285657^"; structure "1-,2-"; splice_chain "73269714-,73268790-";
chr2	juncbase	jcn_only_AA	73277028	73285657	.	-	.	gene_id "jcn_only_AA.1487"; transcript_id "jcn_only_AA.1487"; gene_name "CUFF.297"; flanks "73277028-,73285657^"; structure "1-,2-"; splice_chain "73277028-,73268790-";
chr2	juncbase	jcn_only_AA	73268060	73285657	.	-	.	gene_id "jcn_only_AA.1488"; transcript_id "jcn_only_AA.1488"; gene_name "CUFF.297"; flanks "73268060-,73285657^"; structure "1-,2-"; splice_chain "73268790-,73268060-";
chr2	juncbase	alternative_acceptor	109085540	109086107	.	+	.	gene_id "alternative_acceptor.1118"; transcript_id "alternative_acceptor.1118"; gene_name "CUFF.198,CUFF.333"; flanks "109085540-,109086107^"; structure "1-,2-"; splice_chain "109085756-,109086107-";
chr2	juncbase	alternative_acceptor	232258621	232259492	.	+	.	gene_id "alternative_acceptor.1119"; transcript_id "alternative_acceptor.1119"; gene_name "CUFF.413"; flanks "232258621-,232259492^"; structure "1-,2-"; splice_chain "232259366-,232259492-";
chr2	juncbase	jcn_only_AD	191302287	191334484	.	+	.	gene_id "jcn_only_AD.1909"; transcript_id "jcn_only_AD.1909"; gene_name "CUFF.384"; flanks "191302287-,191334484^"; structure "1^,2^"; splice_chain "191302287^,191307731^";
chr2	juncbase	jcn_only_AD	191334375	191334484	.	+	.	gene_id "jcn_only_AD.1910"; transcript_id "jcn_only_AD.1910"; gene_name "CUFF.384"; flanks "191334375-,191334484^"; structure "1^,2^"; splice_chain "191307731^,191334375^";
chr2	juncbase	cassette	27721664	27722264	.	+	.	gene_id "cassette.888"; transcript_id "cassette.888"; gene_name "CUFF.227"; flanks "27721664-,27722264^"; structure "0,1-2^"; splice_chain ",27722009-27722075^";
chr2	juncbase	jcn_only_AD	109068922	109085436	.	+	.	gene_id "jcn_only_AD.1911"; transcript_id "jcn_only_AD.1911"; gene_name "CUFF.333"; flanks "109068922-,109085436^"; structure "1^,2^"; splice_chain "109068922^,109079141^";
chr2	juncbase	alternative_acceptor	16573594	16613773	.	+	.	gene_id "alternative_acceptor.1120"; transcript_id "alternative_acceptor.1120"; gene_name "CUFF.214"; flanks "16573594-,16613773^"; structure "1-,2-"; splice_chain "16612999-,16613773-";
chr2	juncbase	intron_retention	46842076	46840924	.	-	.	gene_id "intron_retention.1195"; transcript_id "intron_retention.1195"; gene_name "CUFF.277"; flanks "46842076-,46840924^"; structure "0,1^2-"; splice_chain ",46842076^46840924-";
chr2	juncbase	alternative_donor	3383610	3391391	.	+	.	gene_id "alternative_donor.1634"; transcript_id "alternative_donor.1634"; gene_name "CUFF.198"; flanks "3383610-,3391391^"; structure "1^,2^"; splice_chain "3383610^,3383647^";
chr2	juncbase	cassette	231927035	231931620	.	+	.	gene_id "cassette.889"; transcript_id "cassette.889"; gene_name "CUFF.412"; flanks "231927035-,231931620^"; structure "0,1-2^"; splice_chain ",231927220-231927389^";
chr2	juncbase	intron_retention	242607636	242607955	.	+	.	gene_id "intron_retention.1196"; transcript_id "intron_retention.1196"; gene_name "CUFF.422"; flanks "242607636-,242607955^"; structure "0,1^2-"; splice_chain ",242607636^242607955-";
chr2	juncbase	intron_retention	175869934	175869808	.	-	.	gene_id "intron_retention.1197"; transcript_id "intron_retention.1197"; gene_name ""; flanks "175869934-,175869808^"; structure "0,1^2-"; splice_chain ",175869934^175869808-";
chr2	juncbase	jcn_only_AD	1158975	1161234	.	+	.	gene_id "jcn_only_AD.1912"; transcript_id "jcn_only_AD.1912"; gene_name "CUFF.195"; flanks "1158975-,1161234^"; structure "1^,2^"; splice_chain "1133495^,1158975^";
chr2	juncbase	jcn_only_AD	1159411	1161234	.	+	.	gene_id "jcn_only_AD.1913"; transcript_id "jcn_only_AD.1913"; gene_name "CUFF.195"; flanks "1159411-,1161234^"; structure "1^,2^"; splice_chain "1133495^,1159411^";
chr2	juncbase	alternative_donor	3447662	3461392	.	+	.	gene_id "alternative_donor.1635"; transcript_id "alternative_donor.1635"; gene_name "CUFF.198"; flanks "3447662-,3461392^"; structure "1^,2^"; splice_chain "3447662^,3453248^";
chr2	juncbase	alternative_donor	3461000	3461392	.	+	.	gene_id "alternative_donor.1636"; transcript_id "alternative_donor.1636"; gene_name "CUFF.198"; flanks "3461000-,3461392^"; structure "1^,2^"; splice_chain "3453248^,3461000^";
chr2	juncbase	jcn_only_AD	61763337	61761038	.	-	.	gene_id "jcn_only_AD.1914"; transcript_id "jcn_only_AD.1914"; gene_name "CUFF.283"; flanks "61763337-,61761038^"; structure "1^,2^"; splice_chain "61763845^,61763337^";
chr2	juncbase	jcn_only_AD	61761558	61761038	.	-	.	gene_id "jcn_only_AD.1915"; transcript_id "jcn_only_AD.1915"; gene_name "CUFF.283"; flanks "61761558-,61761038^"; structure "1^,2^"; splice_chain "61763845^,61761558^";
chr2	juncbase	jcn_only_AD	61764697	61761038	.	-	.	gene_id "jcn_only_AD.1916"; transcript_id "jcn_only_AD.1916"; gene_name "CUFF.283"; flanks "61764697-,61761038^"; structure "1^,2^"; splice_chain "61764697^,61763845^";
chr2	juncbase	jcn_only_AD	61764154	61761038	.	-	.	gene_id "jcn_only_AD.1917"; transcript_id "jcn_only_AD.1917"; gene_name "CUFF.283"; flanks "61764154-,61761038^"; structure "1^,2^"; splice_chain "61764154^,61763845^";
chr2	juncbase	jcn_only_AD	61765627	61761038	.	-	.	gene_id "jcn_only_AD.1918"; transcript_id "jcn_only_AD.1918"; gene_name "CUFF.283"; flanks "61765627-,61761038^"; structure "1^,2^"; splice_chain "61765627^,61763845^";
chr2	juncbase	jcn_only_AD	61761693	61761038	.	-	.	gene_id "jcn_only_AD.1919"; transcript_id "jcn_only_AD.1919"; gene_name "CUFF.283"; flanks "61761693-,61761038^"; structure "1^,2^"; splice_chain "61763845^,61761693^";
chr2	juncbase	alternative_acceptor	61761038	61765627	.	-	.	gene_id "alternative_acceptor.1121"; transcript_id "alternative_acceptor.1121"; gene_name ""; flanks "61761038-,61765627^"; structure "1-,2-"; splice_chain "61764722-,61761038-";
chr2	juncbase	jcn_only_AD	175869934	175816930	.	-	.	gene_id "jcn_only_AD.1920"; transcript_id "jcn_only_AD.1920"; gene_name "CUFF.397"; flanks "175869934-,175816930^"; structure "1^,2^"; splice_chain "175869934^,175869622^";
chr2	juncbase	jcn_only_AD	61763845	61761038	.	-	.	gene_id "jcn_only_AD.1921"; transcript_id "jcn_only_AD.1921"; gene_name ""; flanks "61763845-,61761038^"; structure "1^,2^"; splice_chain "61764697^,61763845^";
chr2	juncbase	jcn_only_AD	61763337	61761038	.	-	.	gene_id "jcn_only_AD.1922"; transcript_id "jcn_only_AD.1922"; gene_name ""; flanks "61763337-,61761038^"; structure "1^,2^"; splice_chain "61764697^,61763337^";
chr2	juncbase	jcn_only_AD	61761558	61761038	.	-	.	gene_id "jcn_only_AD.1923"; transcript_id "jcn_only_AD.1923"; gene_name ""; flanks "61761558-,61761038^"; structure "1^,2^"; splice_chain "61764697^,61761558^";
chr2	juncbase	jcn_only_AD	61764154	61761038	.	-	.	gene_id "jcn_only_AD.1924"; transcript_id "jcn_only_AD.1924"; gene_name ""; flanks "61764154-,61761038^"; structure "1^,2^"; splice_chain "61764697^,61764154^";
chr2	juncbase	jcn_only_AD	61765627	61761038	.	-	.	gene_id "jcn_only_AD.1925"; transcript_id "jcn_only_AD.1925"; gene_name ""; flanks "61765627-,61761038^"; structure "1^,2^"; splice_chain "61765627^,61764697^";
chr2	juncbase	jcn_only_AD	61761693	61761038	.	-	.	gene_id "jcn_only_AD.1926"; transcript_id "jcn_only_AD.1926"; gene_name ""; flanks "61761693-,61761038^"; structure "1^,2^"; splice_chain "61764697^,61761693^";
chr2	juncbase	alternative_acceptor	171191960	171225732	.	+	.	gene_id "alternative_acceptor.1122"; transcript_id "alternative_acceptor.1122"; gene_name "CUFF.360"; flanks "171191960-,171225732^"; structure "1-,2-"; splice_chain "171225718-,171225732-";
chr2	juncbase	intron_retention	242594062	242606060	.	+	.	gene_id "intron_retention.1198"; transcript_id "intron_retention.1198"; gene_name ""; flanks "242594062-,242606060^"; structure "0,1^2-"; splice_chain ",242594062^242606060-";
chr2	juncbase	cassette	4021135	4008146	.	-	.	gene_id "cassette.890"; transcript_id "cassette.890"; gene_name "CUFF.202"; flanks "4021135-,4008146^"; structure "0,1-2^"; splice_chain ",4009393-4009360^";
chr2	juncbase	jcn_only_AD	1094096	1099091	.	+	.	gene_id "jcn_only_AD.1927"; transcript_id "jcn_only_AD.1927"; gene_name "CUFF.195"; flanks "1094096-,1099091^"; structure "1^,2^"; splice_chain "1094096^,1098396^";
chr2	juncbase	jcn_only_AD	101541756	101549372	.	+	.	gene_id "jcn_only_AD.1928"; transcript_id "jcn_only_AD.1928"; gene_name "CUFF.323"; flanks "101541756-,101549372^"; structure "1^,2^"; splice_chain "101541756^,101541762^";
chr2	juncbase	intron_retention	208031864	207989128	.	-	.	gene_id "intron_retention.1199"; transcript_id "intron_retention.1199"; gene_name ""; flanks "208031864-,207989128^"; structure "0,1^2-"; splice_chain ",208031864^207989128-";
chr2	juncbase	alternative_acceptor	175816930	175869934	.	-	.	gene_id "alternative_acceptor.1123"; transcript_id "alternative_acceptor.1123"; gene_name ""; flanks "175816930-,175869934^"; structure "1-,2-"; splice_chain "175869808-,175816930-";
chr2	juncbase	alternative_acceptor	3405664	3425652	.	+	.	gene_id "alternative_acceptor.1124"; transcript_id "alternative_acceptor.1124"; gene_name "CUFF.198,CUFF.413"; flanks "3405664-,3425652^"; structure "1-,2-"; splice_chain "3425471-,3425652-";
chr2	juncbase	alternative_donor	200472850	200493787	.	+	.	gene_id "alternative_donor.1637"; transcript_id "alternative_donor.1637"; gene_name "CUFF.389"; flanks "200472850-,200493787^"; structure "1^,2^"; splice_chain "200472850^,200489319^";
chr2	juncbase	intron_retention	242440943	242440211	.	-	.	gene_id "intron_retention.1200"; transcript_id "intron_retention.1200"; gene_name ""; flanks "242440943-,242440211^"; structure "0,1^2-"; splice_chain ",242440943^242440211-";
chr2	juncbase	alternative_donor	61763845	61761038	.	-	.	gene_id "alternative_donor.1638"; transcript_id "alternative_donor.1638"; gene_name "CUFF.283"; flanks "61763845-,61761038^"; structure "1^,2^"; splice_chain "61765627^,61763845^";
chr2	juncbase	alternative_donor	61763337	61761038	.	-	.	gene_id "alternative_donor.1639"; transcript_id "alternative_donor.1639"; gene_name "CUFF.283"; flanks "61763337-,61761038^"; structure "1^,2^"; splice_chain "61765627^,61763337^";
chr2	juncbase	alternative_donor	61761558	61761038	.	-	.	gene_id "alternative_donor.1640"; transcript_id "alternative_donor.1640"; gene_name "CUFF.283"; flanks "61761558-,61761038^"; structure "1^,2^"; splice_chain "61765627^,61761558^";
chr2	juncbase	alternative_donor	61764697	61761038	.	-	.	gene_id "alternative_donor.1641"; transcript_id "alternative_donor.1641"; gene_name "CUFF.283"; flanks "61764697-,61761038^"; structure "1^,2^"; splice_chain "61765627^,61764697^";
chr2	juncbase	alternative_donor	61764154	61761038	.	-	.	gene_id "alternative_donor.1642"; transcript_id "alternative_donor.1642"; gene_name "CUFF.283"; flanks "61764154-,61761038^"; structure "1^,2^"; splice_chain "61765627^,61764154^";
chr2	juncbase	alternative_donor	61761693	61761038	.	-	.	gene_id "alternative_donor.1643"; transcript_id "alternative_donor.1643"; gene_name "CUFF.283"; flanks "61761693-,61761038^"; structure "1^,2^"; splice_chain "61765627^,61761693^";
chr2	juncbase	alternative_donor	3405664	3425652	.	+	.	gene_id "alternative_donor.1644"; transcript_id "alternative_donor.1644"; gene_name "CUFF.198"; flanks "3405664-,3425652^"; structure "1^,2^"; splice_chain "3405664^,3425557^";
chr2	juncbase	jcn_only_AD	208031481	208030430	.	-	.	gene_id "jcn_only_AD.1929"; transcript_id "jcn_only_AD.1929"; gene_name ""; flanks "208031481-,208030430^"; structure "1^,2^"; splice_chain "208031718^,208031481^";
chr2	juncbase	jcn_only_AD	208030637	208030430	.	-	.	gene_id "jcn_only_AD.1930"; transcript_id "jcn_only_AD.1930"; gene_name ""; flanks "208030637-,208030430^"; structure "1^,2^"; splice_chain "208031718^,208030637^";
chr2	juncbase	alternative_acceptor	38231359	38239746	.	+	.	gene_id "alternative_acceptor.1125"; transcript_id "alternative_acceptor.1125"; gene_name ""; flanks "38231359-,38239746^"; structure "1-,2-"; splice_chain "38239746-,38244329-";
chr2	juncbase	alternative_acceptor	38231359	38294125	.	+	.	gene_id "alternative_acceptor.1126"; transcript_id "alternative_acceptor.1126"; gene_name ""; flanks "38231359-,38294125^"; structure "1-,2-"; splice_chain "38244329-,38294125-";
chr2	juncbase	alternative_donor	207988498	207953305	.	-	.	gene_id "alternative_donor.1645"; transcript_id "alternative_donor.1645"; gene_name "CUFF.396"; flanks "207988498-,207953305^"; structure "1^,2^"; splice_chain "207988700^,207988498^";
chr2	juncbase	alternative_donor	207989068	207953305	.	-	.	gene_id "alternative_donor.1646"; transcript_id "alternative_donor.1646"; gene_name "CUFF.396"; flanks "207989068-,207953305^"; structure "1^,2^"; splice_chain "207989068^,207988700^";
chr2	juncbase	jcn_only_AD	3453248	3461392	.	+	.	gene_id "jcn_only_AD.1931"; transcript_id "jcn_only_AD.1931"; gene_name "CUFF.198"; flanks "3453248-,3461392^"; structure "1^,2^"; splice_chain "3447662^,3453248^";
chr2	juncbase	jcn_only_AD	3461000	3461392	.	+	.	gene_id "jcn_only_AD.1932"; transcript_id "jcn_only_AD.1932"; gene_name "CUFF.198"; flanks "3461000-,3461392^"; structure "1^,2^"; splice_chain "3447662^,3461000^";
chr2	juncbase	alternative_acceptor	27668316	27668612	.	-	.	gene_id "alternative_acceptor.1127"; transcript_id "alternative_acceptor.1127"; gene_name "CUFF.226"; flanks "27668316-,27668612^"; structure "1-,2-"; splice_chain "27668496-,27668316-";
chr2	juncbase	alternative_donor	86389099	86386794	.	-	.	gene_id "alternative_donor.1647"; transcript_id "alternative_donor.1647"; gene_name "CUFF.307"; flanks "86389099-,86386794^"; structure "1^,2^"; splice_chain "86389099^,86389075^";
chr2	juncbase	intron_retention	256207	253115	.	-	.	gene_id "intron_retention.1201"; transcript_id "intron_retention.1201"; gene_name ""; flanks "256207-,253115^"; structure "0,1^2-"; splice_chain ",256207^253115-";
chr2	juncbase	intron_retention	27693795	27688749	.	-	.	gene_id "intron_retention.1202"; transcript_id "intron_retention.1202"; gene_name "CUFF.226"; flanks "27693795-,27688749^"; structure "0,1^2-"; splice_chain ",27693795^27688749-";
chr2	juncbase	jcn_only_AD	61753555	61749818	.	-	.	gene_id "jcn_only_AD.1933"; transcript_id "jcn_only_AD.1933"; gene_name "CUFF.283"; flanks "61753555-,61749818^"; structure "1^,2^"; splice_chain "61753556^,61753555^";
chr2	juncbase	jcn_only_AD	61752405	61749818	.	-	.	gene_id "jcn_only_AD.1934"; transcript_id "jcn_only_AD.1934"; gene_name "CUFF.283"; flanks "61752405-,61749818^"; structure "1^,2^"; splice_chain "61753556^,61752405^";
chr2	juncbase	jcn_only_AA	73280680	73285657	.	-	.	gene_id "jcn_only_AA.1489"; transcript_id "jcn_only_AA.1489"; gene_name "CUFF.297"; flanks "73280680-,73285657^"; structure "1-,2-"; splice_chain "73280680-,73269714-";
chr2	juncbase	jcn_only_AA	73277028	73285657	.	-	.	gene_id "jcn_only_AA.1490"; transcript_id "jcn_only_AA.1490"; gene_name "CUFF.297"; flanks "73277028-,73285657^"; structure "1-,2-"; splice_chain "73277028-,73269714-";
chr2	juncbase	jcn_only_AA	73268790	73285657	.	-	.	gene_id "jcn_only_AA.1491"; transcript_id "jcn_only_AA.1491"; gene_name "CUFF.297"; flanks "73268790-,73285657^"; structure "1-,2-"; splice_chain "73269714-,73268790-";
chr2	juncbase	jcn_only_AA	73268060	73285657	.	-	.	gene_id "jcn_only_AA.1492"; transcript_id "jcn_only_AA.1492"; gene_name "CUFF.297"; flanks "73268060-,73285657^"; structure "1-,2-"; splice_chain "73269714-,73268060-";
chr2	juncbase	intron_retention	101604738	101606718	.	+	.	gene_id "intron_retention.1203"; transcript_id "intron_retention.1203"; gene_name "CUFF.323"; flanks "101604738-,101606718^"; structure "0,1^2-"; splice_chain ",101604738^101606718-";
chr2	juncbase	intron_retention	220095072	220096982	.	+	.	gene_id "intron_retention.1204"; transcript_id "intron_retention.1204"; gene_name ""; flanks "220095072-,220096982^"; structure "0,1^2-"; splice_chain ",220095072^220096982-";
chr2	juncbase	jcn_only_AD	61763845	61761038	.	-	.	gene_id "jcn_only_AD.1935"; transcript_id "jcn_only_AD.1935"; gene_name "CUFF.283"; flanks "61763845-,61761038^"; structure "1^,2^"; splice_chain "61763845^,61761558^";
chr2	juncbase	jcn_only_AD	61763337	61761038	.	-	.	gene_id "jcn_only_AD.1936"; transcript_id "jcn_only_AD.1936"; gene_name "CUFF.283"; flanks "61763337-,61761038^"; structure "1^,2^"; splice_chain "61763337^,61761558^";
chr2	juncbase	jcn_only_AD	61764697	61761038	.	-	.	gene_id "jcn_only_AD.1937"; transcript_id "jcn_only_AD.1937"; gene_name "CUFF.283"; flanks "61764697-,61761038^"; structure "1^,2^"; splice_chain "61764697^,61761558^";
chr2	juncbase	jcn_only_AD	61764154	61761038	.	-	.	gene_id "jcn_only_AD.1938"; transcript_id "jcn_only_AD.1938"; gene_name "CUFF.283"; flanks "61764154-,61761038^"; structure "1^,2^"; splice_chain "61764154^,61761558^";
chr2	juncbase	jcn_only_AD	61765627	61761038	.	-	.	gene_id "jcn_only_AD.1939"; transcript_id "jcn_only_AD.1939"; gene_name "CUFF.283"; flanks "61765627-,61761038^"; structure "1^,2^"; splice_chain "61765627^,61761558^";
chr2	juncbase	jcn_only_AD	61761693	61761038	.	-	.	gene_id "jcn_only_AD.1940"; transcript_id "jcn_only_AD.1940"; gene_name "CUFF.283"; flanks "61761693-,61761038^"; structure "1^,2^"; splice_chain "61761693^,61761558^";
chr2	juncbase	jcn_only_AD	86389099	86386794	.	-	.	gene_id "jcn_only_AD.1941"; transcript_id "jcn_only_AD.1941"; gene_name "CUFF.307"; flanks "86389099-,86386794^"; structure "1^,2^"; splice_chain "86389099^,86389075^";
chr2	juncbase	jcn_only_AA	27708370	27712482	.	-	.	gene_id "jcn_only_AA.1493"; transcript_id "jcn_only_AA.1493"; gene_name "CUFF.226"; flanks "27708370-,27712482^"; structure "1-,2-"; splice_chain "27709109-,27708370-";
chr2	juncbase	jcn_only_AD	33487888	33488361	.	+	.	gene_id "jcn_only_AD.1942"; transcript_id "jcn_only_AD.1942"; gene_name "CUFF.249"; flanks "33487888-,33488361^"; structure "1^,2^"; splice_chain "33487888^,33487891^";
chr2	juncbase	jcn_only_AD	175243651	175216453	.	-	.	gene_id "jcn_only_AD.1943"; transcript_id "jcn_only_AD.1943"; gene_name "CUFF.370"; flanks "175243651-,175216453^"; structure "1^,2^"; splice_chain "175243651^,175234715^";
chr2	juncbase	intron_retention	220094622	220096650	.	+	.	gene_id "intron_retention.1205"; transcript_id "intron_retention.1205"; gene_name ""; flanks "220094622-,220096650^"; structure "0,1^2-"; splice_chain ",220094622^220096650-";
chr2	juncbase	jcn_only_AA	219001	229966	.	-	.	gene_id "jcn_only_AA.1494"; transcript_id "jcn_only_AA.1494"; gene_name "CUFF.190"; flanks "219001-,229966^"; structure "1-,2-"; splice_chain "224920-,219001-";
chr2	juncbase	intron_retention	231927389	231931620	.	+	.	gene_id "intron_retention.1206"; transcript_id "intron_retention.1206"; gene_name "CUFF.412"; flanks "231927389-,231931620^"; structure "0,1^2-"; splice_chain ",231927389^231931620-";
chr2	juncbase	intron_retention	177042731	177042222	.	-	.	gene_id "intron_retention.1207"; transcript_id "intron_retention.1207"; gene_name ""; flanks "177042731-,177042222^"; structure "0,1^2-"; splice_chain ",177042731^177042222-";
chr2	juncbase	alternative_donor	175816892	175809671	.	-	.	gene_id "alternative_donor.1648"; transcript_id "alternative_donor.1648"; gene_name "CUFF.371"; flanks "175816892-,175809671^"; structure "1^,2^"; splice_chain "175816892^,175809898^";
chr2	juncbase	intron_retention	242434258	242432955	.	-	.	gene_id "intron_retention.1208"; transcript_id "intron_retention.1208"; gene_name ""; flanks "242434258-,242432955^"; structure "0,1^2-"; splice_chain ",242434258^242432955-";
chr1	juncbase	cassette	167272811	167301707	.	+	.	gene_id "cassette.891"; transcript_id "cassette.891"; gene_name "CUFF.135"; flanks "167272811-,167301707^"; structure "0,1-2^"; splice_chain ",167288251-167288293^";
chr1	juncbase	jcn_only_AD	11159871	11161858	.	+	.	gene_id "jcn_only_AD.1944"; transcript_id "jcn_only_AD.1944"; gene_name "CUFF.11"; flanks "11159871-,11161858^"; structure "1^,2^"; splice_chain "11159871^,11159967^";
chr1	juncbase	alternative_acceptor	16928338	16935003	.	-	.	gene_id "alternative_acceptor.1128"; transcript_id "alternative_acceptor.1128"; gene_name "CUFF.20"; flanks "16928338-,16935003^"; structure "1-,2-"; splice_chain "16934186-,16928338-";
chr1	juncbase	alternative_acceptor	16921508	16935003	.	-	.	gene_id "alternative_acceptor.1129"; transcript_id "alternative_acceptor.1129"; gene_name "CUFF.20"; flanks "16921508-,16935003^"; structure "1-,2-"; splice_chain "16934186-,16921508-";
chr1	juncbase	jcn_only_AD	160137202	160141041	.	+	.	gene_id "jcn_only_AD.1945"; transcript_id "jcn_only_AD.1945"; gene_name "CUFF.122"; flanks "160137202-,160141041^"; structure "1^,2^"; splice_chain "160137202^,160137219^";
chr1	juncbase	intron_retention	245133745	245165423	.	+	.	gene_id "intron_retention.1209"; transcript_id "intron_retention.1209"; gene_name ""; flanks "245133745-,245165423^"; structure "0,1^2-"; splice_chain ",245133745^245165423-";
chr1	juncbase	cassette	147563998	147566015	.	+	.	gene_id "cassette.892"; transcript_id "cassette.892"; gene_name "CUFF.100"; flanks "147563998-,147566015^"; structure "0,1-2^"; splice_chain ",147564304-147564349^";
chr1	juncbase	alternative_donor	31819587	31821676	.	+	.	gene_id "alternative_donor.1649"; transcript_id "alternative_donor.1649"; gene_name "CUFF.41"; flanks "31819587-,31821676^"; structure "1^,2^"; splice_chain "31819587^,31819665^";
chr1	juncbase	intron_retention	11082307	11083250	.	+	.	gene_id "intron_retention.1210"; transcript_id "intron_retention.1210"; gene_name "CUFF.9"; flanks "11082307-,11083250^"; structure "0,1^2-"; splice_chain ",11082307^11083250-";
chr1	juncbase	jcn_only_AD	106145899	106132407	.	-	.	gene_id "jcn_only_AD.1946"; transcript_id "jcn_only_AD.1946"; gene_name ""; flanks "106145899-,106132407^"; structure "1^,2^"; splice_chain "106146785^,106145899^";
chr1	juncbase	jcn_only_AD	106143892	106132407	.	-	.	gene_id "jcn_only_AD.1947"; transcript_id "jcn_only_AD.1947"; gene_name ""; flanks "106143892-,106132407^"; structure "1^,2^"; splice_chain "106146785^,106143892^";
chr1	juncbase	jcn_only_AD	106143253	106132407	.	-	.	gene_id "jcn_only_AD.1948"; transcript_id "jcn_only_AD.1948"; gene_name ""; flanks "106143253-,106132407^"; structure "1^,2^"; splice_chain "106146785^,106143253^";
chr1	juncbase	intron_retention	32829676	32827652	.	-	.	gene_id "intron_retention.1211"; transcript_id "intron_retention.1211"; gene_name "CUFF.45"; flanks "32829676-,32827652^"; structure "0,1^2-"; splice_chain ",32829676^32827652-";
chr1	juncbase	alternative_donor	166808841	166810192	.	+	.	gene_id "alternative_donor.1650"; transcript_id "alternative_donor.1650"; gene_name "CUFF.134"; flanks "166808841-,166810192^"; structure "1^,2^"; splice_chain "166808841^,166809006^";
chr1	juncbase	alternative_donor	106146785	106132407	.	-	.	gene_id "alternative_donor.1651"; transcript_id "alternative_donor.1651"; gene_name "CUFF.84"; flanks "106146785-,106132407^"; structure "1^,2^"; splice_chain "106146785^,106145899^";
chr1	juncbase	alternative_donor	106143892	106132407	.	-	.	gene_id "alternative_donor.1652"; transcript_id "alternative_donor.1652"; gene_name "CUFF.84"; flanks "106143892-,106132407^"; structure "1^,2^"; splice_chain "106145899^,106143892^";
chr1	juncbase	alternative_donor	106143253	106132407	.	-	.	gene_id "alternative_donor.1653"; transcript_id "alternative_donor.1653"; gene_name "CUFF.84"; flanks "106143253-,106132407^"; structure "1^,2^"; splice_chain "106145899^,106143253^";
chr1	juncbase	intron_retention	222802036	222838941	.	+	.	gene_id "intron_retention.1212"; transcript_id "intron_retention.1212"; gene_name ""; flanks "222802036-,222838941^"; structure "0,1^2-"; splice_chain ",222802036^222838941-";
chr1	juncbase	jcn_only_AD	160146352	160147309	.	+	.	gene_id "jcn_only_AD.1949"; transcript_id "jcn_only_AD.1949"; gene_name "CUFF.122"; flanks "160146352-,160147309^"; structure "1^,2^"; splice_chain "160146352^,160146392^";
chr1	juncbase	alternative_acceptor	222837490	222838651	.	+	.	gene_id "alternative_acceptor.1130"; transcript_id "alternative_acceptor.1130"; gene_name "CUFF.166"; flanks "222837490-,222838651^"; structure "1-,2-"; splice_chain "222838225-,222838651-";
chr1	juncbase	intron_retention	22963195	22964103	.	+	.	gene_id "intron_retention.1213"; transcript_id "intron_retention.1213"; gene_name "CUFF.22"; flanks "22963195-,22964103^"; structure "0,1^2-"; splice_chain ",22963195^22964103-";
chr1	juncbase	alternative_acceptor	1991030	2066701	.	+	.	gene_id "alternative_acceptor.1131"; transcript_id "alternative_acceptor.1131"; gene_name "CUFF.4"; flanks "1991030-,2066701^"; structure "1-,2-"; splice_chain "2002738-,2066701-";
chr1	juncbase	cassette	2075780	2077466	.	+	.	gene_id "cassette.893"; transcript_id "cassette.893"; gene_name "CUFF.4"; flanks "2075780-,2077466^"; structure "0,1-2^"; splice_chain ",2076828-2076950^";
chr1	juncbase	intron_retention	54360028	54360112	.	+	.	gene_id "intron_retention.1214"; transcript_id "intron_retention.1214"; gene_name ""; flanks "54360028-,54360112^"; structure "0,1^2-"; splice_chain ",54360028^54360112-";
chr1	juncbase	cassette	114429871	114424619	.	-	.	gene_id "cassette.894"; transcript_id "cassette.894"; gene_name "CUFF.90"; flanks "114429871-,114424619^"; structure "0,1-2^"; splice_chain ",114429280-114429159^";
chr1	juncbase	cassette	114429871	114423762	.	-	.	gene_id "cassette.895"; transcript_id "cassette.895"; gene_name "CUFF.90"; flanks "114429871-,114423762^"; structure "0,1-2^"; splice_chain ",114429280-114429159^";
chr1	juncbase	alternative_donor	155180418	155181918	.	+	.	gene_id "alternative_donor.1654"; transcript_id "alternative_donor.1654"; gene_name "CUFF.111"; flanks "155180418-,155181918^"; structure "1^,2^"; splice_chain "155180418^,155181337^";
chr1	juncbase	cassette	245222760	245245385	.	+	.	gene_id "cassette.896"; transcript_id "cassette.896"; gene_name "CUFF.180"; flanks "245222760-,245245385^"; structure "0,1-2^"; splice_chain ",245238876-245238913^";
chr1	juncbase	jcn_only_AA	106132407	106145899	.	-	.	gene_id "jcn_only_AA.1495"; transcript_id "jcn_only_AA.1495"; gene_name ""; flanks "106132407-,106145899^"; structure "1-,2-"; splice_chain "106144007-,106132407-";
chr1	juncbase	cassette	169454801	169439424	.	-	.	gene_id "cassette.897"; transcript_id "cassette.897"; gene_name "CUFF.141"; flanks "169454801-,169439424^"; structure "0,1-2^"; splice_chain ",169446995-169446393^";
chr1	juncbase	cassette	1987001	1990980	.	+	.	gene_id "cassette.898"; transcript_id "cassette.898"; gene_name "CUFF.4"; flanks "1987001-,1990980^"; structure "0,1-2^"; splice_chain ",1987923-1988012^";
chr1	juncbase	alternative_donor	167301772	167334704	.	+	.	gene_id "alternative_donor.1655"; transcript_id "alternative_donor.1655"; gene_name "CUFF.135"; flanks "167301772-,167334704^"; structure "1^,2^"; splice_chain "167301772^,167326758^";
chr1	juncbase	intron_retention	153930875	153924080	.	-	.	gene_id "intron_retention.1215"; transcript_id "intron_retention.1215"; gene_name ""; flanks "153930875-,153924080^"; structure "0,1^2-"; splice_chain ",153930875^153924080-";
chr1	juncbase	alternative_donor	156446804	156445029	.	-	.	gene_id "alternative_donor.1656"; transcript_id "alternative_donor.1656"; gene_name "CUFF.114"; flanks "156446804-,156445029^"; structure "1^,2^"; splice_chain "156446804^,156446286^";
chr1	juncbase	jcn_only_AA	167365664	167367231	.	+	.	gene_id "jcn_only_AA.1496"; transcript_id "jcn_only_AA.1496"; gene_name "CUFF.135,CUFF.180"; flanks "167365664-,167367231^"; structure "1-,2-"; splice_chain "167365770-,167367231-";
chr1	juncbase	jcn_only_AD	153389039	153390542	.	+	.	gene_id "jcn_only_AD.1950"; transcript_id "jcn_only_AD.1950"; gene_name "CUFF.106"; flanks "153389039-,153390542^"; structure "1^,2^"; splice_chain "153389039^,153389754^";
chr1	juncbase	jcn_only_AA	207277775	207286346	.	+	.	gene_id "jcn_only_AA.1497"; transcript_id "jcn_only_AA.1497"; gene_name "CUFF.157,CUFF.69"; flanks "207277775-,207286346^"; structure "1-,2-"; splice_chain "207286244-,207286346-";
chr1	juncbase	cassette	2075780	2080311	.	+	.	gene_id "cassette.899"; transcript_id "cassette.899"; gene_name "CUFF.4"; flanks "2075780-,2080311^"; structure "0,1-2^"; splice_chain ",2077466-2077547^";
chr1	juncbase	intron_retention	41487288	41486450	.	-	.	gene_id "intron_retention.1216"; transcript_id "intron_retention.1216"; gene_name "CUFF.49"; flanks "41487288-,41486450^"; structure "0,1^2-"; splice_chain ",41487288^41486450-";
chr1	juncbase	alternative_acceptor	120529705	120539620	.	-	.	gene_id "alternative_acceptor.1132"; transcript_id "alternative_acceptor.1132"; gene_name "CUFF.92"; flanks "120529705-,120539620^"; structure "1-,2-"; splice_chain "120539369-,120529705-";
chr1	juncbase	jcn_only_AD	31769943	31782891	.	+	.	gene_id "jcn_only_AD.1951"; transcript_id "jcn_only_AD.1951"; gene_name "CUFF.41"; flanks "31769943-,31782891^"; structure "1^,2^"; splice_chain "31769943^,31770060^";
chr1	juncbase	jcn_only_AD	31769922	31782891	.	+	.	gene_id "jcn_only_AD.1952"; transcript_id "jcn_only_AD.1952"; gene_name "CUFF.41"; flanks "31769922-,31782891^"; structure "1^,2^"; splice_chain "31769922^,31770060^";
chr1	juncbase	cassette	167353188	167358825	.	+	.	gene_id "cassette.900"; transcript_id "cassette.900"; gene_name "CUFF.135"; flanks "167353188-,167358825^"; structure "0,1-2^"; splice_chain ",167356418-167356484^";
chr1	juncbase	cassette	161008670	160991277	.	-	.	gene_id "cassette.901"; transcript_id "cassette.901"; gene_name "CUFF.127"; flanks "161008670-,160991277^"; structure "0,1-2^"; splice_chain ",160992617-160992540^";
chr1	juncbase	jcn_only_AD	166808841	166810192	.	+	.	gene_id "jcn_only_AD.1953"; transcript_id "jcn_only_AD.1953"; gene_name "CUFF.134"; flanks "166808841-,166810192^"; structure "1^,2^"; splice_chain "166808841^,166809006^";
chr1	juncbase	jcn_only_AD	2101043	2103494	.	+	.	gene_id "jcn_only_AD.1954"; transcript_id "jcn_only_AD.1954"; gene_name "CUFF.4"; flanks "2101043-,2103494^"; structure "1^,2^"; splice_chain "2101043^,2103084^";
chr1	juncbase	alternative_acceptor	167365664	167367231	.	+	.	gene_id "alternative_acceptor.1133"; transcript_id "alternative_acceptor.1133"; gene_name "CUFF.135,CUFF.180"; flanks "167365664-,167367231^"; structure "1-,2-"; splice_chain "167365770-,167367231-";
chr1	juncbase	cassette	166810325	166818175	.	+	.	gene_id "cassette.902"; transcript_id "cassette.902"; gene_name "CUFF.134"; flanks "166810325-,166818175^"; structure "0,1-2^"; splice_chain ",166816731-166816829^";
chr1	juncbase	alternative_donor	167190195	167272711	.	+	.	gene_id "alternative_donor.1657"; transcript_id "alternative_donor.1657"; gene_name "CUFF.135"; flanks "167190195-,167272711^"; structure "1^,2^"; splice_chain "167190195^,167210847^";
chr1	juncbase	alternative_donor	245246785	245246924	.	+	.	gene_id "alternative_donor.1658"; transcript_id "alternative_donor.1658"; gene_name "CUFF.180"; flanks "245246785-,245246924^"; structure "1^,2^"; splice_chain "245246785^,245246786^";
chr1	juncbase	intron_retention	153925047	153924922	.	-	.	gene_id "intron_retention.1217"; transcript_id "intron_retention.1217"; gene_name "CUFF.110"; flanks "153925047-,153924922^"; structure "0,1^2-"; splice_chain ",153925047^153924922-";
chr1	juncbase	jcn_only_AA	161970128	161976087	.	-	.	gene_id "jcn_only_AA.1498"; transcript_id "jcn_only_AA.1498"; gene_name "CUFF.132"; flanks "161970128-,161976087^"; structure "1-,2-"; splice_chain "161970131-,161970128-";
chr1	juncbase	jcn_only_AA	1656202	1667256	.	+	.	gene_id "jcn_only_AA.1499"; transcript_id "jcn_only_AA.1499"; gene_name "CUFF.2"; flanks "1656202-,1667256^"; structure "1-,2-"; splice_chain "1661685-,1667256-";
chr1	juncbase	alternative_acceptor	160137219	160141041	.	+	.	gene_id "alternative_acceptor.1134"; transcript_id "alternative_acceptor.1134"; gene_name "CUFF.41"; flanks "160137219-,160141041^"; structure "1-,2-"; splice_chain "160139463-,160141041-";
chr1	juncbase	alternative_donor	1982140	1986880	.	+	.	gene_id "alternative_donor.1659"; transcript_id "alternative_donor.1659"; gene_name "CUFF.4"; flanks "1982140-,1986880^"; structure "1^,2^"; splice_chain "1982140^,1982451^";
chr1	juncbase	cassette	224378021	224380034	.	+	.	gene_id "cassette.903"; transcript_id "cassette.903"; gene_name "CUFF.172"; flanks "224378021-,224380034^"; structure "0,1-2^"; splice_chain ",224378794-224378858^";
chr1	juncbase	alternative_acceptor	33647022	33647595	.	-	.	gene_id "alternative_acceptor.1135"; transcript_id "alternative_acceptor.1135"; gene_name "CUFF.48"; flanks "33647022-,33647595^"; structure "1-,2-"; splice_chain "33647095-,33647022-";
chr1	juncbase	jcn_only_AA	85718385	85724207	.	-	.	gene_id "jcn_only_AA.1500"; transcript_id "jcn_only_AA.1500"; gene_name "CUFF.72"; flanks "85718385-,85724207^"; structure "1-,2-"; splice_chain "85723154-,85718385-";
chr1	juncbase	jcn_only_AD	106146785	106132407	.	-	.	gene_id "jcn_only_AD.1955"; transcript_id "jcn_only_AD.1955"; gene_name "CUFF.84"; flanks "106146785-,106132407^"; structure "1^,2^"; splice_chain "106146785^,106143253^";
chr1	juncbase	jcn_only_AD	106145899	106132407	.	-	.	gene_id "jcn_only_AD.1956"; transcript_id "jcn_only_AD.1956"; gene_name "CUFF.84"; flanks "106145899-,106132407^"; structure "1^,2^"; splice_chain "106145899^,106143253^";
chr1	juncbase	jcn_only_AD	106143892	106132407	.	-	.	gene_id "jcn_only_AD.1957"; transcript_id "jcn_only_AD.1957"; gene_name "CUFF.84"; flanks "106143892-,106132407^"; structure "1^,2^"; splice_chain "106143892^,106143253^";
chr1	juncbase	alternative_donor	106146785	106132407	.	-	.	gene_id "alternative_donor.1660"; transcript_id "alternative_donor.1660"; gene_name "CUFF.84"; flanks "106146785-,106132407^"; structure "1^,2^"; splice_chain "106146785^,106143892^";
chr1	juncbase	alternative_donor	106145899	106132407	.	-	.	gene_id "alternative_donor.1661"; transcript_id "alternative_donor.1661"; gene_name "CUFF.84"; flanks "106145899-,106132407^"; structure "1^,2^"; splice_chain "106145899^,106143892^";
chr1	juncbase	alternative_donor	106143253	106132407	.	-	.	gene_id "alternative_donor.1662"; transcript_id "alternative_donor.1662"; gene_name "CUFF.84"; flanks "106143253-,106132407^"; structure "1^,2^"; splice_chain "106143892^,106143253^";
chr1	juncbase	alternative_acceptor	32560572	32566043	.	+	.	gene_id "alternative_acceptor.1136"; transcript_id "alternative_acceptor.1136"; gene_name "CUFF.44"; flanks "32560572-,32566043^"; structure "1-,2-"; splice_chain "32561261-,32566043-";
chr1	juncbase	cassette	169697199	169696666	.	-	.	gene_id "cassette.904"; transcript_id "cassette.904"; gene_name "CUFF.142"; flanks "169697199-,169696666^"; structure "0,1-2^"; splice_chain ",169697068-169696880^";
chr1	juncbase	cassette	169698327	169696666	.	-	.	gene_id "cassette.905"; transcript_id "cassette.905"; gene_name "CUFF.142"; flanks "169698327-,169696666^"; structure "0,1-2^"; splice_chain ",169697068-169696880^";
chr1	juncbase	alternative_donor	2101043	2103494	.	+	.	gene_id "alternative_donor.1663"; transcript_id "alternative_donor.1663"; gene_name "CUFF.4"; flanks "2101043-,2103494^"; structure "1^,2^"; splice_chain "2101043^,2103084^";
chr1	juncbase	intron_retention	53905100	53904721	.	-	.	gene_id "intron_retention.1218"; transcript_id "intron_retention.1218"; gene_name ""; flanks "53905100-,53904721^"; structure "0,1^2-"; splice_chain ",53905100^53904721-";
chr1	juncbase	jcn_only_AA	160137219	160141041	.	+	.	gene_id "jcn_only_AA.1501"; transcript_id "jcn_only_AA.1501"; gene_name "CUFF.41"; flanks "160137219-,160141041^"; structure "1-,2-"; splice_chain "160139463-,160141041-";
chr1	juncbase	cassette	167353188	167365523	.	+	.	gene_id "cassette.906"; transcript_id "cassette.906"; gene_name "CUFF.135"; flanks "167353188-,167365523^"; structure "0,1-2^"; splice_chain ",167358825-167358998^";
chr1	juncbase	intron_retention	110212193	110213936	.	+	.	gene_id "intron_retention.1219"; transcript_id "intron_retention.1219"; gene_name "CUFF.86"; flanks "110212193-,110213936^"; structure "0,1^2-"; splice_chain ",110212193^110213936-";
chr1	juncbase	jcn_only_AD	54356967	54359987	.	+	.	gene_id "jcn_only_AD.1958"; transcript_id "jcn_only_AD.1958"; gene_name "CUFF.57"; flanks "54356967-,54359987^"; structure "1^,2^"; splice_chain "54356967^,54357949^";
chr1	juncbase	alternative_acceptor	167301772	167343393	.	+	.	gene_id "alternative_acceptor.1137"; transcript_id "alternative_acceptor.1137"; gene_name ""; flanks "167301772-,167343393^"; structure "1-,2-"; splice_chain "167334704-,167343393-";
chr1	juncbase	jcn_only_AA	120529705	120539620	.	-	.	gene_id "jcn_only_AA.1502"; transcript_id "jcn_only_AA.1502"; gene_name "CUFF.92"; flanks "120529705-,120539620^"; structure "1-,2-"; splice_chain "120539369-,120529705-";
chr1	juncbase	intron_retention	110212197	110213912	.	+	.	gene_id "intron_retention.1220"; transcript_id "intron_retention.1220"; gene_name ""; flanks "110212197-,110213912^"; structure "0,1^2-"; splice_chain ",110212197^110213912-";
chr1	juncbase	intron_retention	32827559	32827477	.	-	.	gene_id "intron_retention.1221"; transcript_id "intron_retention.1221"; gene_name "CUFF.45"; flanks "32827559-,32827477^"; structure "0,1^2-"; splice_chain ",32827559^32827477-";
chr1	juncbase	intron_retention	213188568	213186760	.	-	.	gene_id "intron_retention.1222"; transcript_id "intron_retention.1222"; gene_name "CUFF.163"; flanks "213188568-,213186760^"; structure "0,1^2-"; splice_chain ",213188568^213186760-";
chr1	juncbase	jcn_only_AD	200870287	200876962	.	+	.	gene_id "jcn_only_AD.1959"; transcript_id "jcn_only_AD.1959"; gene_name "CUFF.153"; flanks "200870287-,200876962^"; structure "1^,2^"; splice_chain "200870287^,200875623^";
chr1	juncbase	intron_retention	155181337	155181918	.	+	.	gene_id "intron_retention.1223"; transcript_id "intron_retention.1223"; gene_name ""; flanks "155181337-,155181918^"; structure "0,1^2-"; splice_chain ",155181337^155181918-";
chr1	juncbase	cassette	207287630	207288761	.	+	.	gene_id "cassette.907"; transcript_id "cassette.907"; gene_name "CUFF.157"; flanks "207287630-,207288761^"; structure "0,1-2^"; splice_chain ",207288021-207288116^";
chr1	juncbase	alternative_acceptor	161953125	161953386	.	-	.	gene_id "alternative_acceptor.1138"; transcript_id "alternative_acceptor.1138"; gene_name "CUFF.132"; flanks "161953125-,161953386^"; structure "1-,2-"; splice_chain "161953195-,161953125-";
chr1	juncbase	jcn_only_AA	167345392	167353094	.	+	.	gene_id "jcn_only_AA.1503"; transcript_id "jcn_only_AA.1503"; gene_name "CUFF.135"; flanks "167345392-,167353094^"; structure "1-,2-"; splice_chain "167345790-,167353094-";
chr1	juncbase	jcn_only_AD	106146785	106132407	.	-	.	gene_id "jcn_only_AD.1960"; transcript_id "jcn_only_AD.1960"; gene_name "CUFF.84"; flanks "106146785-,106132407^"; structure "1^,2^"; splice_chain "106146785^,106143892^";
chr1	juncbase	jcn_only_AD	106145899	106132407	.	-	.	gene_id "jcn_only_AD.1961"; transcript_id "jcn_only_AD.1961"; gene_name "CUFF.84"; flanks "106145899-,106132407^"; structure "1^,2^"; splice_chain "106145899^,106143892^";
chr1	juncbase	jcn_only_AD	106143253	106132407	.	-	.	gene_id "jcn_only_AD.1962"; transcript_id "jcn_only_AD.1962"; gene_name "CUFF.84"; flanks "106143253-,106132407^"; structure "1^,2^"; splice_chain "106143892^,106143253^";
chr1	juncbase	jcn_only_AD	110212193	110213909	.	+	.	gene_id "jcn_only_AD.1963"; transcript_id "jcn_only_AD.1963"; gene_name "CUFF.86"; flanks "110212193-,110213909^"; structure "1^,2^"; splice_chain "110212193^,110212856^";
chr1	juncbase	alternative_donor	22963195	22964103	.	+	.	gene_id "alternative_donor.1664"; transcript_id "alternative_donor.1664"; gene_name "CUFF.22"; flanks "22963195-,22964103^"; structure "1^,2^"; splice_chain "22963195^,22963353^";
chr1	juncbase	alternative_acceptor	207277775	207286346	.	+	.	gene_id "alternative_acceptor.1139"; transcript_id "alternative_acceptor.1139"; gene_name "CUFF.157,CUFF.69"; flanks "207277775-,207286346^"; structure "1-,2-"; splice_chain "207286244-,207286346-";
chr1	juncbase	jcn_only_AD	31769922	31782891	.	+	.	gene_id "jcn_only_AD.1964"; transcript_id "jcn_only_AD.1964"; gene_name "CUFF.41"; flanks "31769922-,31782891^"; structure "1^,2^"; splice_chain "31769922^,31769943^";
chr1	juncbase	jcn_only_AD	31770060	31782891	.	+	.	gene_id "jcn_only_AD.1965"; transcript_id "jcn_only_AD.1965"; gene_name "CUFF.41"; flanks "31770060-,31782891^"; structure "1^,2^"; splice_chain "31769943^,31770060^";
chr1	juncbase	jcn_only_AD	2106752	2116022	.	+	.	gene_id "jcn_only_AD.1966"; transcript_id "jcn_only_AD.1966"; gene_name "CUFF.4"; flanks "2106752-,2116022^"; structure "1^,2^"; splice_chain "2106752^,2113353^";
chr1	juncbase	jcn_only_AA	2101043	2103494	.	+	.	gene_id "jcn_only_AA.1504"; transcript_id "jcn_only_AA.1504"; gene_name "CUFF.4"; flanks "2101043-,2103494^"; structure "1-,2-"; splice_chain "2102992-,2103494-";
chr1	juncbase	intron_retention	245133745	245180544	.	+	.	gene_id "intron_retention.1224"; transcript_id "intron_retention.1224"; gene_name ""; flanks "245133745-,245180544^"; structure "0,1^2-"; splice_chain ",245133745^245180544-";
chr1	juncbase	alternative_donor	247322308	247287173	.	-	.	gene_id "alternative_donor.1665"; transcript_id "alternative_donor.1665"; gene_name "CUFF.188"; flanks "247322308-,247287173^"; structure "1^,2^"; splice_chain "247322308^,247302018^";
chr1	juncbase	cassette	11074022	11076901	.	+	.	gene_id "cassette.908"; transcript_id "cassette.908"; gene_name "CUFF.9"; flanks "11074022-,11076901^"; structure "0,1-2^"; splice_chain ",11076180-11076311^";
chr1	juncbase	cassette	150249040	150253246	.	+	.	gene_id "cassette.909"; transcript_id "cassette.909"; gene_name "CUFF.102"; flanks "150249040-,150253246^"; structure "0,1-2^"; splice_chain ",150252054-150252152^";
chr1	juncbase	jcn_only_AD	167345392	167353094	.	+	.	gene_id "jcn_only_AD.1967"; transcript_id "jcn_only_AD.1967"; gene_name "CUFF.135"; flanks "167345392-,167353094^"; structure "1^,2^"; splice_chain "167345392^,167345824^";
chr1	juncbase	intron_retention	230391090	230398319	.	+	.	gene_id "intron_retention.1225"; transcript_id "intron_retention.1225"; gene_name "CUFF.174"; flanks "230391090-,230398319^"; structure "0,1^2-"; splice_chain ",230391090^230398319-";
chr1	juncbase	alternative_acceptor	31783011	31791956	.	+	.	gene_id "alternative_acceptor.1140"; transcript_id "alternative_acceptor.1140"; gene_name "CUFF.18,CUFF.41"; flanks "31783011-,31791956^"; structure "1-,2-"; splice_chain "31791014-,31791956-";
chr1	juncbase	jcn_only_AA	200860530	200867520	.	+	.	gene_id "jcn_only_AA.1505"; transcript_id "jcn_only_AA.1505"; gene_name "CUFF.153"; flanks "200860530-,200867520^"; structure "1-,2-"; splice_chain "200867435-,200867520-";
chr1	juncbase	alternative_donor	169698327	169697068	.	-	.	gene_id "alternative_donor.1666"; transcript_id "alternative_donor.1666"; gene_name "CUFF.142,CUFF.147"; flanks "169698327-,169697068^"; structure "1^,2^"; splice_chain "169698327^,169697199^";
chr1	juncbase	alternative_acceptor	32540678	32541268	.	+	.	gene_id "alternative_acceptor.1141"; transcript_id "alternative_acceptor.1141"; gene_name ""; flanks "32540678-,32541268^"; structure "1-,2-"; splice_chain "32541204-,32541268-";
chr1	juncbase	intron_retention	11082298	11083250	.	+	.	gene_id "intron_retention.1226"; transcript_id "intron_retention.1226"; gene_name "CUFF.9"; flanks "11082298-,11083250^"; structure "0,1^2-"; splice_chain ",11082298^11083250-";
chr1	juncbase	jcn_only_AA	171123353	171130297	.	+	.	gene_id "jcn_only_AA.1506"; transcript_id "jcn_only_AA.1506"; gene_name "CUFF.135,CUFF.144"; flanks "171123353-,171130297^"; structure "1-,2-"; splice_chain "171130203-,171130297-";
chr1	juncbase	jcn_only_AA	113471974	113497898	.	-	.	gene_id "jcn_only_AA.1507"; transcript_id "jcn_only_AA.1507"; gene_name ""; flanks "113471974-,113497898^"; structure "1-,2-"; splice_chain "113472656-,113471974-";
chr1	juncbase	cassette	31769922	31791956	.	+	.	gene_id "cassette.910"; transcript_id "cassette.910"; gene_name "CUFF.41"; flanks "31769922-,31791956^"; structure "0,1-2^"; splice_chain ",31782891-31783011^";
chr1	juncbase	alternative_acceptor	151149507	151150477	.	-	.	gene_id "alternative_acceptor.1142"; transcript_id "alternative_acceptor.1142"; gene_name "CUFF.104"; flanks "151149507-,151150477^"; structure "1-,2-"; splice_chain "151149540-,151149507-";
chr1	juncbase	jcn_only_AD	28655635	28657108	.	+	.	gene_id "jcn_only_AD.1968"; transcript_id "jcn_only_AD.1968"; gene_name "CUFF.34"; flanks "28655635-,28657108^"; structure "1^,2^"; splice_chain "28655635^,28655691^";
chr1	juncbase	jcn_only_AD	31769943	31782891	.	+	.	gene_id "jcn_only_AD.1969"; transcript_id "jcn_only_AD.1969"; gene_name "CUFF.41"; flanks "31769943-,31782891^"; structure "1^,2^"; splice_chain "31769922^,31769943^";
chr1	juncbase	jcn_only_AD	31770060	31782891	.	+	.	gene_id "jcn_only_AD.1970"; transcript_id "jcn_only_AD.1970"; gene_name "CUFF.41"; flanks "31770060-,31782891^"; structure "1^,2^"; splice_chain "31769922^,31770060^";
chr1	juncbase	jcn_only_AD	245246785	245246924	.	+	.	gene_id "jcn_only_AD.1971"; transcript_id "jcn_only_AD.1971"; gene_name "CUFF.180"; flanks "245246785-,245246924^"; structure "1^,2^"; splice_chain "245246785^,245246786^";
chr1	juncbase	alternative_acceptor	156450569	156452229	.	-	.	gene_id "alternative_acceptor.1143"; transcript_id "alternative_acceptor.1143"; gene_name "CUFF.114"; flanks "156450569-,156452229^"; structure "1-,2-"; splice_chain "156450763-,156450569-";
chr1	juncbase	cassette	54360220	54375604	.	+	.	gene_id "cassette.911"; transcript_id "cassette.911"; gene_name "CUFF.57"; flanks "54360220-,54375604^"; structure "0,1-2^"; splice_chain ",54370339-54370482^";
chr1	juncbase	cassette	54360220	54371768	.	+	.	gene_id "cassette.912"; transcript_id "cassette.912"; gene_name "CUFF.57"; flanks "54360220-,54371768^"; structure "0,1-2^"; splice_chain ",54370339-54370482^";
chr1	juncbase	jcn_only_AD	156909340	156908305	.	-	.	gene_id "jcn_only_AD.1972"; transcript_id "jcn_only_AD.1972"; gene_name "CUFF.116"; flanks "156909340-,156908305^"; structure "1^,2^"; splice_chain "156909340^,156908941^";
chr1	juncbase	cassette	213188955	213181808	.	-	.	gene_id "cassette.913"; transcript_id "cassette.913"; gene_name "CUFF.163"; flanks "213188955-,213181808^"; structure "0,1-2^"; splice_chain ",213186760-213186435^";
chr1	juncbase	cassette	32542447	32557276	.	+	.	gene_id "cassette.914"; transcript_id "cassette.914"; gene_name "CUFF.44"; flanks "32542447-,32557276^"; structure "0,1-2^"; splice_chain ",32542765-32542919^";
chr1	juncbase	cassette	32541423	32557276	.	+	.	gene_id "cassette.915"; transcript_id "cassette.915"; gene_name "CUFF.44"; flanks "32541423-,32557276^"; structure "0,1-2^"; splice_chain ",32542765-32542919^";
chr1	juncbase	alternative_donor	174124765	174084787	.	-	.	gene_id "alternative_donor.1667"; transcript_id "alternative_donor.1667"; gene_name "CUFF.147"; flanks "174124765-,174084787^"; structure "1^,2^"; splice_chain "174124765^,174091222^";
chr1	juncbase	jcn_only_AA	153925845	153930821	.	-	.	gene_id "jcn_only_AA.1508"; transcript_id "jcn_only_AA.1508"; gene_name "CUFF.110"; flanks "153925845-,153930821^"; structure "1-,2-"; splice_chain "153927642-,153925845-";
chr1	juncbase	alternative_donor	78445303	78546359	.	+	.	gene_id "alternative_donor.1668"; transcript_id "alternative_donor.1668"; gene_name "CUFF.69"; flanks "78445303-,78546359^"; structure "1^,2^"; splice_chain "78445303^,78512018^";
chr1	juncbase	intron_retention	153924494	153924142	.	-	.	gene_id "intron_retention.1227"; transcript_id "intron_retention.1227"; gene_name "CUFF.110"; flanks "153924494-,153924142^"; structure "0,1^2-"; splice_chain ",153924494^153924142-";
chr1	juncbase	jcn_only_AD	156450626	156449588	.	-	.	gene_id "jcn_only_AD.1973"; transcript_id "jcn_only_AD.1973"; gene_name ""; flanks "156450626-,156449588^"; structure "1^,2^"; splice_chain "156450626^,156450435^";
chr1	juncbase	alternative_acceptor	156908305	156909340	.	-	.	gene_id "alternative_acceptor.1144"; transcript_id "alternative_acceptor.1144"; gene_name "CUFF.116"; flanks "156908305-,156909340^"; structure "1-,2-"; splice_chain "156909077-,156908305-";
chr1	juncbase	alternative_donor	160137202	160141041	.	+	.	gene_id "alternative_donor.1669"; transcript_id "alternative_donor.1669"; gene_name "CUFF.122"; flanks "160137202-,160141041^"; structure "1^,2^"; splice_chain "160137202^,160137219^";
chr1	juncbase	alternative_donor	11159871	11161858	.	+	.	gene_id "alternative_donor.1670"; transcript_id "alternative_donor.1670"; gene_name "CUFF.11"; flanks "11159871-,11161858^"; structure "1^,2^"; splice_chain "11159871^,11159967^";
chr1	juncbase	intron_retention	158585006	158584096	.	-	.	gene_id "intron_retention.1228"; transcript_id "intron_retention.1228"; gene_name "CUFF.118"; flanks "158585006-,158584096^"; structure "0,1^2-"; splice_chain ",158585006^158584096-";
chr1	juncbase	intron_retention	153925281	153925111	.	-	.	gene_id "intron_retention.1229"; transcript_id "intron_retention.1229"; gene_name "CUFF.110"; flanks "153925281-,153925111^"; structure "0,1^2-"; splice_chain ",153925281^153925111-";
chr1	juncbase	jcn_only_AA	32540678	32541268	.	+	.	gene_id "jcn_only_AA.1509"; transcript_id "jcn_only_AA.1509"; gene_name ""; flanks "32540678-,32541268^"; structure "1-,2-"; splice_chain "32541204-,32541268-";
chr1	juncbase	cassette	155180418	155182176	.	+	.	gene_id "cassette.916"; transcript_id "cassette.916"; gene_name "CUFF.111"; flanks "155180418-,155182176^"; structure "0,1-2^"; splice_chain ",155181918-155182010^";
chr1	juncbase	jcn_only_AA	153925111	153925281	.	-	.	gene_id "jcn_only_AA.1510"; transcript_id "jcn_only_AA.1510"; gene_name "CUFF.110"; flanks "153925111-,153925281^"; structure "1-,2-"; splice_chain "153925126-,153925111-";
chr1	juncbase	intron_retention	27425703	27425495	.	-	.	gene_id "intron_retention.1230"; transcript_id "intron_retention.1230"; gene_name ""; flanks "27425703-,27425495^"; structure "0,1^2-"; splice_chain ",27425703^27425495-";
chr1	juncbase	alternative_donor	156449377	156449138	.	-	.	gene_id "alternative_donor.1671"; transcript_id "alternative_donor.1671"; gene_name "CUFF.114"; flanks "156449377-,156449138^"; structure "1^,2^"; splice_chain "156450626^,156449377^";
chr1	juncbase	alternative_donor	156449378	156449138	.	-	.	gene_id "alternative_donor.1672"; transcript_id "alternative_donor.1672"; gene_name "CUFF.114"; flanks "156449378-,156449138^"; structure "1^,2^"; splice_chain "156450626^,156449378^";
chr1	juncbase	jcn_only_AA	156449138	156450626	.	-	.	gene_id "jcn_only_AA.1511"; transcript_id "jcn_only_AA.1511"; gene_name ""; flanks "156449138-,156450626^"; structure "1-,2-"; splice_chain "156449588-,156449138-";
chr1	juncbase	cassette	27480474	27436268	.	-	.	gene_id "cassette.917"; transcript_id "cassette.917"; gene_name "CUFF.32"; flanks "27480474-,27436268^"; structure "0,1-2^"; splice_chain ",27440777-27440317^";
chr1	juncbase	alternative_donor	11082298	11083250	.	+	.	gene_id "alternative_donor.1673"; transcript_id "alternative_donor.1673"; gene_name "CUFF.9"; flanks "11082298-,11083250^"; structure "1^,2^"; splice_chain "11082298^,11082307^";
chr1	juncbase	intron_retention	156909340	156909077	.	-	.	gene_id "intron_retention.1231"; transcript_id "intron_retention.1231"; gene_name ""; flanks "156909340-,156909077^"; structure "0,1^2-"; splice_chain ",156909340^156909077-";
chr1	juncbase	alternative_acceptor	167345392	167353094	.	+	.	gene_id "alternative_acceptor.1145"; transcript_id "alternative_acceptor.1145"; gene_name "CUFF.135"; flanks "167345392-,167353094^"; structure "1-,2-"; splice_chain "167345790-,167353094-";
chr1	juncbase	jcn_only_AD	174129055	174124835	.	-	.	gene_id "jcn_only_AD.1974"; transcript_id "jcn_only_AD.1974"; gene_name ""; flanks "174129055-,174124835^"; structure "1^,2^"; splice_chain "174129055^,174128025^";
chr1	juncbase	alternative_acceptor	32541423	32557273	.	+	.	gene_id "alternative_acceptor.1146"; transcript_id "alternative_acceptor.1146"; gene_name "CUFF.44"; flanks "32541423-,32557273^"; structure "1-,2-"; splice_chain "32542165-,32557273-";
chr1	juncbase	cassette	41483307	41481900	.	-	.	gene_id "cassette.918"; transcript_id "cassette.918"; gene_name "CUFF.49"; flanks "41483307-,41481900^"; structure "0,1-2^"; splice_chain ",41483049-41482906^";
chr1	juncbase	jcn_only_AD	22963195	22964103	.	+	.	gene_id "jcn_only_AD.1975"; transcript_id "jcn_only_AD.1975"; gene_name "CUFF.22"; flanks "22963195-,22964103^"; structure "1^,2^"; splice_chain "22963195^,22963353^";
chr1	juncbase	jcn_only_AD	1982140	1986880	.	+	.	gene_id "jcn_only_AD.1976"; transcript_id "jcn_only_AD.1976"; gene_name "CUFF.4"; flanks "1982140-,1986880^"; structure "1^,2^"; splice_chain "1982140^,1982451^";
chr1	juncbase	alternative_acceptor	16382018	16382173	.	+	.	gene_id "alternative_acceptor.1147"; transcript_id "alternative_acceptor.1147"; gene_name "CUFF.18"; flanks "16382018-,16382173^"; structure "1-,2-"; splice_chain "16382170-,16382173-";
chr1	juncbase	alternative_donor	160146352	160147309	.	+	.	gene_id "alternative_donor.1674"; transcript_id "alternative_donor.1674"; gene_name "CUFF.122"; flanks "160146352-,160147309^"; structure "1^,2^"; splice_chain "160146352^,160146392^";
chr1	juncbase	jcn_only_AA	41483651	41485898	.	-	.	gene_id "jcn_only_AA.1512"; transcript_id "jcn_only_AA.1512"; gene_name "CUFF.49"; flanks "41483651-,41485898^"; structure "1-,2-"; splice_chain "41483828-,41483651-";
chr1	juncbase	cassette	166810325	166816731	.	+	.	gene_id "cassette.919"; transcript_id "cassette.919"; gene_name "CUFF.134"; flanks "166810325-,166816731^"; structure "0,1-2^"; splice_chain ",166815849-166815975^";
chr1	juncbase	jcn_only_AD	156449378	156449138	.	-	.	gene_id "jcn_only_AD.1977"; transcript_id "jcn_only_AD.1977"; gene_name "CUFF.114"; flanks "156449378-,156449138^"; structure "1^,2^"; splice_chain "156449378^,156449377^";
chr1	juncbase	jcn_only_AD	156450626	156449138	.	-	.	gene_id "jcn_only_AD.1978"; transcript_id "jcn_only_AD.1978"; gene_name "CUFF.114"; flanks "156450626-,156449138^"; structure "1^,2^"; splice_chain "156450626^,156449377^";
chr1	juncbase	intron_retention	224380220	224380598	.	+	.	gene_id "intron_retention.1232"; transcript_id "intron_retention.1232"; gene_name "CUFF.172"; flanks "224380220-,224380598^"; structure "0,1^2-"; splice_chain ",224380220^224380598-";
chr1	juncbase	jcn_only_AA	53878940	53883200	.	-	.	gene_id "jcn_only_AA.1513"; transcript_id "jcn_only_AA.1513"; gene_name "CUFF.54"; flanks "53878940-,53883200^"; structure "1-,2-"; splice_chain "53881196-,53878940-";
chr1	juncbase	intron_retention	41487295	41486605	.	-	.	gene_id "intron_retention.1233"; transcript_id "intron_retention.1233"; gene_name ""; flanks "41487295-,41486605^"; structure "0,1^2-"; splice_chain ",41487295^41486605-";
chr1	juncbase	alternative_donor	2106752	2116022	.	+	.	gene_id "alternative_donor.1675"; transcript_id "alternative_donor.1675"; gene_name "CUFF.4"; flanks "2106752-,2116022^"; structure "1^,2^"; splice_chain "2106752^,2113353^";
chr1	juncbase	jcn_only_AD	41487295	41486605	.	-	.	gene_id "jcn_only_AD.1979"; transcript_id "jcn_only_AD.1979"; gene_name ""; flanks "41487295-,41486605^"; structure "1^,2^"; splice_chain "41487295^,41487202^";
chr1	juncbase	cassette	222819027	222823634	.	+	.	gene_id "cassette.920"; transcript_id "cassette.920"; gene_name "CUFF.166"; flanks "222819027-,222823634^"; structure "0,1-2^"; splice_chain ",222822171-222822192^";
chr1	juncbase	jcn_only_AD	106146785	106132407	.	-	.	gene_id "jcn_only_AD.1980"; transcript_id "jcn_only_AD.1980"; gene_name "CUFF.84"; flanks "106146785-,106132407^"; structure "1^,2^"; splice_chain "106146785^,106145899^";
chr1	juncbase	jcn_only_AD	106143892	106132407	.	-	.	gene_id "jcn_only_AD.1981"; transcript_id "jcn_only_AD.1981"; gene_name "CUFF.84"; flanks "106143892-,106132407^"; structure "1^,2^"; splice_chain "106145899^,106143892^";
chr1	juncbase	jcn_only_AD	106143253	106132407	.	-	.	gene_id "jcn_only_AD.1982"; transcript_id "jcn_only_AD.1982"; gene_name "CUFF.84"; flanks "106143253-,106132407^"; structure "1^,2^"; splice_chain "106145899^,106143253^";
chr1	juncbase	intron_retention	155180418	155182176	.	+	.	gene_id "intron_retention.1234"; transcript_id "intron_retention.1234"; gene_name ""; flanks "155180418-,155182176^"; structure "0,1^2-"; splice_chain ",155180418^155182176-";
chr1	juncbase	alternative_donor	41487295	41486605	.	-	.	gene_id "alternative_donor.1676"; transcript_id "alternative_donor.1676"; gene_name ""; flanks "41487295-,41486605^"; structure "1^,2^"; splice_chain "41487295^,41487202^";
chr1	juncbase	alternative_acceptor	32827136	32827331	.	-	.	gene_id "alternative_acceptor.1148"; transcript_id "alternative_acceptor.1148"; gene_name "CUFF.45"; flanks "32827136-,32827331^"; structure "1-,2-"; splice_chain "32827165-,32827136-";
chr1	juncbase	intron_retention	156915837	156914989	.	-	.	gene_id "intron_retention.1235"; transcript_id "intron_retention.1235"; gene_name "CUFF.116"; flanks "156915837-,156914989^"; structure "0,1^2-"; splice_chain ",156915837^156914989-";
chr1	juncbase	intron_retention	54359959	54360084	.	+	.	gene_id "intron_retention.1236"; transcript_id "intron_retention.1236"; gene_name ""; flanks "54359959-,54360084^"; structure "0,1^2-"; splice_chain ",54359959^54360084-";
chr1	juncbase	cassette	145575404	145578062	.	+	.	gene_id "cassette.921"; transcript_id "cassette.921"; gene_name "CUFF.97"; flanks "145575404-,145578062^"; structure "0,1-2^"; splice_chain ",145577652-145577753^";
chr1	juncbase	intron_retention	41487202	41486605	.	-	.	gene_id "intron_retention.1237"; transcript_id "intron_retention.1237"; gene_name ""; flanks "41487202-,41486605^"; structure "0,1^2-"; splice_chain ",41487202^41486605-";
chr1	juncbase	cassette	161043510	161042675	.	-	.	gene_id "cassette.922"; transcript_id "cassette.922"; gene_name "CUFF.126"; flanks "161043510-,161042675^"; structure "0,1-2^"; splice_chain ",161043089-161043015^";
chr1	juncbase	jcn_only_AD	32541855	32542364	.	+	.	gene_id "jcn_only_AD.1983"; transcript_id "jcn_only_AD.1983"; gene_name ""; flanks "32541855-,32542364^"; structure "1^,2^"; splice_chain "32541855^,32542247^";
chr1	juncbase	alternative_acceptor	110211993	110212258	.	+	.	gene_id "alternative_acceptor.1149"; transcript_id "alternative_acceptor.1149"; gene_name ""; flanks "110211993-,110212258^"; structure "1-,2-"; splice_chain "110212093-,110212258-";
chr1	juncbase	alternative_donor	247322308	247302059	.	-	.	gene_id "alternative_donor.1677"; transcript_id "alternative_donor.1677"; gene_name "CUFF.188"; flanks "247322308-,247302059^"; structure "1^,2^"; splice_chain "247322308^,247313160^";
chr1	juncbase	alternative_acceptor	247323115	247335150	.	-	.	gene_id "alternative_acceptor.1150"; transcript_id "alternative_acceptor.1150"; gene_name "CUFF.188"; flanks "247323115-,247335150^"; structure "1-,2-"; splice_chain "247323169-,247323115-";
chr1	juncbase	intron_retention	174128302	174128128	.	-	.	gene_id "intron_retention.1238"; transcript_id "intron_retention.1238"; gene_name "CUFF.147"; flanks "174128302-,174128128^"; structure "0,1^2-"; splice_chain ",174128302^174128128-";
chr1	juncbase	jcn_only_AD	245245463	245246744	.	+	.	gene_id "jcn_only_AD.1984"; transcript_id "jcn_only_AD.1984"; gene_name "CUFF.180"; flanks "245245463-,245246744^"; structure "1^,2^"; splice_chain "245245463^,245245464^";
chr1	juncbase	jcn_only_AA	31783011	31791956	.	+	.	gene_id "jcn_only_AA.1514"; transcript_id "jcn_only_AA.1514"; gene_name "CUFF.18,CUFF.41"; flanks "31783011-,31791956^"; structure "1-,2-"; splice_chain "31791014-,31791956-";
chr1	juncbase	cassette	158464192	158444457	.	-	.	gene_id "cassette.923"; transcript_id "cassette.923"; gene_name "CUFF.120"; flanks "158464192-,158444457^"; structure "0,1-2^"; splice_chain ",158451592-158449695^";
chr1	juncbase	jcn_only_AA	1991030	2066701	.	+	.	gene_id "jcn_only_AA.1515"; transcript_id "jcn_only_AA.1515"; gene_name "CUFF.4"; flanks "1991030-,2066701^"; structure "1-,2-"; splice_chain "2002738-,2066701-";
chr1	juncbase	alternative_donor	156909340	156908305	.	-	.	gene_id "alternative_donor.1678"; transcript_id "alternative_donor.1678"; gene_name "CUFF.116"; flanks "156909340-,156908305^"; structure "1^,2^"; splice_chain "156909340^,156908941^";
chr1	juncbase	intron_retention	2087531	2100957	.	+	.	gene_id "intron_retention.1239"; transcript_id "intron_retention.1239"; gene_name "CUFF.4"; flanks "2087531-,2100957^"; structure "0,1^2-"; splice_chain ",2087531^2100957-";
chr1	juncbase	jcn_only_AD	53883200	53878940	.	-	.	gene_id "jcn_only_AD.1985"; transcript_id "jcn_only_AD.1985"; gene_name "CUFF.54,CUFF.88"; flanks "53883200-,53878940^"; structure "1^,2^"; splice_chain "53883200^,53881073^";
chr1	juncbase	cassette	169700976	169698814	.	-	.	gene_id "cassette.924"; transcript_id "cassette.924"; gene_name "CUFF.142"; flanks "169700976-,169698814^"; structure "0,1-2^"; splice_chain ",169699758-169699573^";
chr1	juncbase	intron_retention	158464445	158464344	.	-	.	gene_id "intron_retention.1240"; transcript_id "intron_retention.1240"; gene_name "CUFF.120"; flanks "158464445-,158464344^"; structure "0,1^2-"; splice_chain ",158464445^158464344-";
chr1	juncbase	alternative_acceptor	110212193	110213936	.	+	.	gene_id "alternative_acceptor.1151"; transcript_id "alternative_acceptor.1151"; gene_name "CUFF.86"; flanks "110212193-,110213936^"; structure "1-,2-"; splice_chain "110213909-,110213936-";
chr1	juncbase	jcn_only_AA	167301772	167343393	.	+	.	gene_id "jcn_only_AA.1516"; transcript_id "jcn_only_AA.1516"; gene_name ""; flanks "167301772-,167343393^"; structure "1-,2-"; splice_chain "167334704-,167343393-";
chr1	juncbase	alternative_acceptor	106132407	106145899	.	-	.	gene_id "alternative_acceptor.1152"; transcript_id "alternative_acceptor.1152"; gene_name ""; flanks "106132407-,106145899^"; structure "1-,2-"; splice_chain "106144007-,106132407-";
chr1	juncbase	alternative_donor	1987001	1987923	.	+	.	gene_id "alternative_donor.1679"; transcript_id "alternative_donor.1679"; gene_name "CUFF.4"; flanks "1987001-,1987923^"; structure "1^,2^"; splice_chain "1987001^,1987315^";
chr1	juncbase	alternative_donor	110211105	110211547	.	+	.	gene_id "alternative_donor.1680"; transcript_id "alternative_donor.1680"; gene_name "CUFF.86"; flanks "110211105-,110211547^"; structure "1^,2^"; splice_chain "110211105^,110211122^";
chr1	juncbase	alternative_acceptor	167382351	167385286	.	+	.	gene_id "alternative_acceptor.1153"; transcript_id "alternative_acceptor.1153"; gene_name "CUFF.135"; flanks "167382351-,167385286^"; structure "1-,2-"; splice_chain "167384737-,167385286-";
chr1	juncbase	intron_retention	113471714	113464755	.	-	.	gene_id "intron_retention.1241"; transcript_id "intron_retention.1241"; gene_name "CUFF.88"; flanks "113471714-,113464755^"; structure "0,1^2-"; splice_chain ",113471714^113464755-";
chr1	juncbase	alternative_donor	155180206	155180339	.	+	.	gene_id "alternative_donor.1681"; transcript_id "alternative_donor.1681"; gene_name "CUFF.111"; flanks "155180206-,155180339^"; structure "1^,2^"; splice_chain "155180206^,155180226^";
chr1	juncbase	intron_retention	200883187	200883602	.	+	.	gene_id "intron_retention.1242"; transcript_id "intron_retention.1242"; gene_name "CUFF.153"; flanks "200883187-,200883602^"; structure "0,1^2-"; splice_chain ",200883187^200883602-";
chr1	juncbase	jcn_only_AA	167382351	167385286	.	+	.	gene_id "jcn_only_AA.1517"; transcript_id "jcn_only_AA.1517"; gene_name "CUFF.135"; flanks "167382351-,167385286^"; structure "1-,2-"; splice_chain "167384737-,167385286-";
chr1	juncbase	alternative_acceptor	85718385	85724207	.	-	.	gene_id "alternative_acceptor.1154"; transcript_id "alternative_acceptor.1154"; gene_name "CUFF.72"; flanks "85718385-,85724207^"; structure "1-,2-"; splice_chain "85723154-,85718385-";
chr1	juncbase	jcn_only_AA	70820790	70832127	.	+	.	gene_id "jcn_only_AA.1518"; transcript_id "jcn_only_AA.1518"; gene_name "CUFF.68,CUFF.86"; flanks "70820790-,70832127^"; structure "1-,2-"; splice_chain "70831829-,70832127-";
chr1	juncbase	alternative_acceptor	161970128	161976087	.	-	.	gene_id "alternative_acceptor.1155"; transcript_id "alternative_acceptor.1155"; gene_name "CUFF.132"; flanks "161970128-,161976087^"; structure "1-,2-"; splice_chain "161970131-,161970128-";
chr1	juncbase	alternative_donor	156450626	156449588	.	-	.	gene_id "alternative_donor.1682"; transcript_id "alternative_donor.1682"; gene_name ""; flanks "156450626-,156449588^"; structure "1^,2^"; splice_chain "156450626^,156450435^";
chr1	juncbase	alternative_acceptor	245180628	245222688	.	+	.	gene_id "alternative_acceptor.1156"; transcript_id "alternative_acceptor.1156"; gene_name "CUFF.180,CUFF.6"; flanks "245180628-,245222688^"; structure "1-,2-"; splice_chain "245193957-,245222688-";
chr1	juncbase	intron_retention	26230132	26228173	.	-	.	gene_id "intron_retention.1243"; transcript_id "intron_retention.1243"; gene_name "CUFF.28"; flanks "26230132-,26228173^"; structure "0,1^2-"; splice_chain ",26230132^26228173-";
chr1	juncbase	intron_retention	200860530	200867520	.	+	.	gene_id "intron_retention.1244"; transcript_id "intron_retention.1244"; gene_name "CUFF.153"; flanks "200860530-,200867520^"; structure "0,1^2-"; splice_chain ",200860530^200867520-";
chr1	juncbase	intron_retention	41486536	41486450	.	-	.	gene_id "intron_retention.1245"; transcript_id "intron_retention.1245"; gene_name "CUFF.49"; flanks "41486536-,41486450^"; structure "0,1^2-"; splice_chain ",41486536^41486450-";
chr1	juncbase	jcn_only_AA	110211993	110212258	.	+	.	gene_id "jcn_only_AA.1519"; transcript_id "jcn_only_AA.1519"; gene_name ""; flanks "110211993-,110212258^"; structure "1-,2-"; splice_chain "110212093-,110212258-";
chr1	juncbase	jcn_only_AD	151162600	151158426	.	-	.	gene_id "jcn_only_AD.1986"; transcript_id "jcn_only_AD.1986"; gene_name "CUFF.104"; flanks "151162600-,151158426^"; structure "1^,2^"; splice_chain "151162600^,151162481^";
chr1	juncbase	cassette	11074022	11076901	.	+	.	gene_id "cassette.925"; transcript_id "cassette.925"; gene_name "CUFF.9"; flanks "11074022-,11076901^"; structure "0,1-2^"; splice_chain ",11075581-11075703^";
chr1	juncbase	intron_retention	245246990	245250062	.	+	.	gene_id "intron_retention.1246"; transcript_id "intron_retention.1246"; gene_name ""; flanks "245246990-,245250062^"; structure "0,1^2-"; splice_chain ",245246990^245250062-";
chr1	juncbase	alternative_acceptor	200860530	200867520	.	+	.	gene_id "alternative_acceptor.1157"; transcript_id "alternative_acceptor.1157"; gene_name "CUFF.153"; flanks "200860530-,200867520^"; structure "1-,2-"; splice_chain "200867435-,200867520-";
chr1	juncbase	cassette	16899637	16894525	.	-	.	gene_id "cassette.926"; transcript_id "cassette.926"; gene_name "CUFF.20"; flanks "16899637-,16894525^"; structure "0,1-2^"; splice_chain ",16895731-16895568^";
chr1	juncbase	alternative_acceptor	11083386	11084359	.	+	.	gene_id "alternative_acceptor.1158"; transcript_id "alternative_acceptor.1158"; gene_name "CUFF.122,CUFF.9"; flanks "11083386-,11084359^"; structure "1-,2-"; splice_chain "11084121-,11084359-";
chr1	juncbase	intron_retention	145578479	145578637	.	+	.	gene_id "intron_retention.1247"; transcript_id "intron_retention.1247"; gene_name "CUFF.97"; flanks "145578479-,145578637^"; structure "0,1^2-"; splice_chain ",145578479^145578637-";
chr1	juncbase	intron_retention	110211993	110212258	.	+	.	gene_id "intron_retention.1248"; transcript_id "intron_retention.1248"; gene_name ""; flanks "110211993-,110212258^"; structure "0,1^2-"; splice_chain ",110211993^110212258-";
chr1	juncbase	alternative_acceptor	113471974	113497898	.	-	.	gene_id "alternative_acceptor.1159"; transcript_id "alternative_acceptor.1159"; gene_name ""; flanks "113471974-,113497898^"; structure "1-,2-"; splice_chain "113472656-,113471974-";
chr1	juncbase	jcn_only_AD	155180206	155180339	.	+	.	gene_id "jcn_only_AD.1987"; transcript_id "jcn_only_AD.1987"; gene_name "CUFF.111"; flanks "155180206-,155180339^"; structure "1^,2^"; splice_chain "155180206^,155180226^";
chr1	juncbase	jcn_only_AD	2087531	2100957	.	+	.	gene_id "jcn_only_AD.1988"; transcript_id "jcn_only_AD.1988"; gene_name "CUFF.4"; flanks "2087531-,2100957^"; structure "1^,2^"; splice_chain "2087531^,2100556^";
chr1	juncbase	alternative_donor	70820790	70831829	.	+	.	gene_id "alternative_donor.1683"; transcript_id "alternative_donor.1683"; gene_name ""; flanks "70820790-,70831829^"; structure "1^,2^"; splice_chain "70820790^,70820891^";
chr1	juncbase	jcn_only_AD	174124765	174084787	.	-	.	gene_id "jcn_only_AD.1989"; transcript_id "jcn_only_AD.1989"; gene_name "CUFF.147"; flanks "174124765-,174084787^"; structure "1^,2^"; splice_chain "174124765^,174091222^";
chr1	juncbase	alternative_donor	32560572	32566043	.	+	.	gene_id "alternative_donor.1684"; transcript_id "alternative_donor.1684"; gene_name "CUFF.44"; flanks "32560572-,32566043^"; structure "1^,2^"; splice_chain "32560572^,32561363^";
chr1	juncbase	jcn_only_AA	106012918	106148565	.	+	.	gene_id "jcn_only_AA.1520"; transcript_id "jcn_only_AA.1520"; gene_name ""; flanks "106012918-,106148565^"; structure "1-,2-"; splice_chain "106148551-,106148565-";
chr1	juncbase	alternative_donor	151162600	151158426	.	-	.	gene_id "alternative_donor.1685"; transcript_id "alternative_donor.1685"; gene_name "CUFF.104"; flanks "151162600-,151158426^"; structure "1^,2^"; splice_chain "151162600^,151162481^";
chr1	juncbase	jcn_only_AD	155180418	155181918	.	+	.	gene_id "jcn_only_AD.1990"; transcript_id "jcn_only_AD.1990"; gene_name "CUFF.111"; flanks "155180418-,155181918^"; structure "1^,2^"; splice_chain "155180418^,155181337^";
chr1	juncbase	intron_retention	153927541	153927465	.	-	.	gene_id "intron_retention.1249"; transcript_id "intron_retention.1249"; gene_name "CUFF.110"; flanks "153927541-,153927465^"; structure "0,1^2-"; splice_chain ",153927541^153927465-";
chr1	juncbase	jcn_only_AA	32541423	32557273	.	+	.	gene_id "jcn_only_AA.1521"; transcript_id "jcn_only_AA.1521"; gene_name "CUFF.44"; flanks "32541423-,32557273^"; structure "1-,2-"; splice_chain "32542165-,32557273-";
chr1	juncbase	intron_retention	161953386	161953125	.	-	.	gene_id "intron_retention.1250"; transcript_id "intron_retention.1250"; gene_name "CUFF.132"; flanks "161953386-,161953125^"; structure "0,1^2-"; splice_chain ",161953386^161953125-";
chr1	juncbase	jcn_only_AA	78546544	78560636	.	+	.	gene_id "jcn_only_AA.1522"; transcript_id "jcn_only_AA.1522"; gene_name ""; flanks "78546544-,78560636^"; structure "1-,2-"; splice_chain "78558441-,78560636-";
chr1	juncbase	intron_retention	200882751	200882989	.	+	.	gene_id "intron_retention.1251"; transcript_id "intron_retention.1251"; gene_name "CUFF.153"; flanks "200882751-,200882989^"; structure "0,1^2-"; splice_chain ",200882751^200882989-";
chr1	juncbase	jcn_only_AA	247323115	247335150	.	-	.	gene_id "jcn_only_AA.1523"; transcript_id "jcn_only_AA.1523"; gene_name "CUFF.188"; flanks "247323115-,247335150^"; structure "1-,2-"; splice_chain "247323169-,247323115-";
chr1	juncbase	jcn_only_AA	16928338	16935003	.	-	.	gene_id "jcn_only_AA.1524"; transcript_id "jcn_only_AA.1524"; gene_name "CUFF.20"; flanks "16928338-,16935003^"; structure "1-,2-"; splice_chain "16934186-,16928338-";
chr1	juncbase	jcn_only_AA	16921508	16935003	.	-	.	gene_id "jcn_only_AA.1525"; transcript_id "jcn_only_AA.1525"; gene_name "CUFF.20"; flanks "16921508-,16935003^"; structure "1-,2-"; splice_chain "16934186-,16921508-";
chr1	juncbase	intron_retention	54395712	54394113	.	-	.	gene_id "intron_retention.1252"; transcript_id "intron_retention.1252"; gene_name "CUFF.56"; flanks "54395712-,54394113^"; structure "0,1^2-"; splice_chain ",54395712^54394113-";
chr1	juncbase	cassette	222835674	222837340	.	+	.	gene_id "cassette.927"; transcript_id "cassette.927"; gene_name "CUFF.166"; flanks "222835674-,222837340^"; structure "0,1-2^"; splice_chain ",222836230-222836373^";
chr1	juncbase	intron_retention	245246990	245254796	.	+	.	gene_id "intron_retention.1253"; transcript_id "intron_retention.1253"; gene_name ""; flanks "245246990-,245254796^"; structure "0,1^2-"; splice_chain ",245246990^245254796-";
chr1	juncbase	alternative_acceptor	41483651	41485898	.	-	.	gene_id "alternative_acceptor.1160"; transcript_id "alternative_acceptor.1160"; gene_name "CUFF.49"; flanks "41483651-,41485898^"; structure "1-,2-"; splice_chain "41483828-,41483651-";
chr1	juncbase	alternative_acceptor	171123353	171130297	.	+	.	gene_id "alternative_acceptor.1161"; transcript_id "alternative_acceptor.1161"; gene_name "CUFF.135,CUFF.144"; flanks "171123353-,171130297^"; structure "1-,2-"; splice_chain "171130203-,171130297-";
chr1	juncbase	alternative_acceptor	156453222	156470278	.	-	.	gene_id "alternative_acceptor.1162"; transcript_id "alternative_acceptor.1162"; gene_name ""; flanks "156453222-,156470278^"; structure "1-,2-"; splice_chain "156469352-,156453222-";
chr1	juncbase	jcn_only_AA	245180628	245222688	.	+	.	gene_id "jcn_only_AA.1526"; transcript_id "jcn_only_AA.1526"; gene_name "CUFF.180,CUFF.6"; flanks "245180628-,245222688^"; structure "1-,2-"; splice_chain "245193957-,245222688-";
chr1	juncbase	jcn_only_AD	156449377	156449138	.	-	.	gene_id "jcn_only_AD.1991"; transcript_id "jcn_only_AD.1991"; gene_name ""; flanks "156449377-,156449138^"; structure "1^,2^"; splice_chain "156449378^,156449377^";
chr1	juncbase	jcn_only_AD	156450626	156449138	.	-	.	gene_id "jcn_only_AD.1992"; transcript_id "jcn_only_AD.1992"; gene_name ""; flanks "156450626-,156449138^"; structure "1^,2^"; splice_chain "156450626^,156449378^";
chr1	juncbase	cassette	202863312	202861787	.	-	.	gene_id "cassette.928"; transcript_id "cassette.928"; gene_name "CUFF.155"; flanks "202863312-,202861787^"; structure "0,1-2^"; splice_chain ",202862553-202862367^";
chr1	juncbase	jcn_only_AD	156470278	156453222	.	-	.	gene_id "jcn_only_AD.1993"; transcript_id "jcn_only_AD.1993"; gene_name ""; flanks "156470278-,156453222^"; structure "1^,2^"; splice_chain "156470278^,156469224^";
chr1	juncbase	intron_retention	158589012	158587846	.	-	.	gene_id "intron_retention.1254"; transcript_id "intron_retention.1254"; gene_name "CUFF.118"; flanks "158589012-,158587846^"; structure "0,1^2-"; splice_chain ",158589012^158587846-";
chr1	juncbase	alternative_donor	153389039	153390542	.	+	.	gene_id "alternative_donor.1686"; transcript_id "alternative_donor.1686"; gene_name "CUFF.106"; flanks "153389039-,153390542^"; structure "1^,2^"; splice_chain "153389039^,153389754^";
chr1	juncbase	cassette	47139891	47152345	.	+	.	gene_id "cassette.929"; transcript_id "cassette.929"; gene_name "CUFF.51"; flanks "47139891-,47152345^"; structure "0,1-2^"; splice_chain ",47147853-47147936^";
chr1	juncbase	alternative_donor	245245463	245246744	.	+	.	gene_id "alternative_donor.1687"; transcript_id "alternative_donor.1687"; gene_name "CUFF.180"; flanks "245245463-,245246744^"; structure "1^,2^"; splice_chain "245245463^,245245464^";
chr1	juncbase	cassette	167341273	167345266	.	+	.	gene_id "cassette.930"; transcript_id "cassette.930"; gene_name "CUFF.135"; flanks "167341273-,167345266^"; structure "0,1-2^"; splice_chain ",167343345-167343533^";
chr1	juncbase	intron_retention	2005368	2066701	.	+	.	gene_id "intron_retention.1255"; transcript_id "intron_retention.1255"; gene_name ""; flanks "2005368-,2066701^"; structure "0,1^2-"; splice_chain ",2005368^2066701-";
chr1	juncbase	intron_retention	156909340	156908305	.	-	.	gene_id "intron_retention.1256"; transcript_id "intron_retention.1256"; gene_name "CUFF.116"; flanks "156909340-,156908305^"; structure "0,1^2-"; splice_chain ",156909340^156908305-";
chr1	juncbase	jcn_only_AD	247322308	247287173	.	-	.	gene_id "jcn_only_AD.1994"; transcript_id "jcn_only_AD.1994"; gene_name "CUFF.188"; flanks "247322308-,247287173^"; structure "1^,2^"; splice_chain "247322308^,247302018^";
chr1	juncbase	alternative_acceptor	153925111	153925281	.	-	.	gene_id "alternative_acceptor.1163"; transcript_id "alternative_acceptor.1163"; gene_name "CUFF.110"; flanks "153925111-,153925281^"; structure "1-,2-"; splice_chain "153925126-,153925111-";
chr1	juncbase	jcn_only_AA	32560572	32566043	.	+	.	gene_id "jcn_only_AA.1527"; transcript_id "jcn_only_AA.1527"; gene_name "CUFF.44"; flanks "32560572-,32566043^"; structure "1-,2-"; splice_chain "32561261-,32566043-";
chr1	juncbase	intron_retention	166819660	166821822	.	+	.	gene_id "intron_retention.1257"; transcript_id "intron_retention.1257"; gene_name "CUFF.134"; flanks "166819660-,166821822^"; structure "0,1^2-"; splice_chain ",166819660^166821822-";
chr1	juncbase	intron_retention	161953386	161953195	.	-	.	gene_id "intron_retention.1258"; transcript_id "intron_retention.1258"; gene_name ""; flanks "161953386-,161953195^"; structure "0,1^2-"; splice_chain ",161953386^161953195-";
chr1	juncbase	cassette	70832220	70833300	.	+	.	gene_id "cassette.931"; transcript_id "cassette.931"; gene_name "CUFF.68"; flanks "70832220-,70833300^"; structure "0,1-2^"; splice_chain ",70832616-70832667^";
chr1	juncbase	jcn_only_AA	151149507	151150477	.	-	.	gene_id "jcn_only_AA.1528"; transcript_id "jcn_only_AA.1528"; gene_name "CUFF.104"; flanks "151149507-,151150477^"; structure "1-,2-"; splice_chain "151149540-,151149507-";
chr1	juncbase	alternative_donor	156449377	156449138	.	-	.	gene_id "alternative_donor.1688"; transcript_id "alternative_donor.1688"; gene_name ""; flanks "156449377-,156449138^"; structure "1^,2^"; splice_chain "156449378^,156449377^";
chr1	juncbase	alternative_donor	156450626	156449138	.	-	.	gene_id "alternative_donor.1689"; transcript_id "alternative_donor.1689"; gene_name ""; flanks "156450626-,156449138^"; structure "1^,2^"; splice_chain "156450626^,156449378^";
chr1	juncbase	alternative_acceptor	53878940	53883200	.	-	.	gene_id "alternative_acceptor.1164"; transcript_id "alternative_acceptor.1164"; gene_name "CUFF.54"; flanks "53878940-,53883200^"; structure "1-,2-"; splice_chain "53881196-,53878940-";
chr1	juncbase	alternative_acceptor	16928338	16935003	.	-	.	gene_id "alternative_acceptor.1165"; transcript_id "alternative_acceptor.1165"; gene_name "CUFF.20"; flanks "16928338-,16935003^"; structure "1-,2-"; splice_chain "16928338-,16921508-";
chr1	juncbase	alternative_acceptor	16934186	16935003	.	-	.	gene_id "alternative_acceptor.1166"; transcript_id "alternative_acceptor.1166"; gene_name "CUFF.20"; flanks "16934186-,16935003^"; structure "1-,2-"; splice_chain "16934186-,16921508-";
chr1	juncbase	intron_retention	158592773	158590256	.	-	.	gene_id "intron_retention.1259"; transcript_id "intron_retention.1259"; gene_name "CUFF.118"; flanks "158592773-,158590256^"; structure "0,1^2-"; splice_chain ",158592773^158590256-";
chr1	juncbase	jcn_only_AD	169698327	169697068	.	-	.	gene_id "jcn_only_AD.1995"; transcript_id "jcn_only_AD.1995"; gene_name "CUFF.142,CUFF.147"; flanks "169698327-,169697068^"; structure "1^,2^"; splice_chain "169698327^,169697199^";
chr1	juncbase	intron_retention	156909999	156909702	.	-	.	gene_id "intron_retention.1260"; transcript_id "intron_retention.1260"; gene_name "CUFF.116"; flanks "156909999-,156909702^"; structure "0,1^2-"; splice_chain ",156909999^156909702-";
chr1	juncbase	cassette	15753780	15755089	.	+	.	gene_id "cassette.932"; transcript_id "cassette.932"; gene_name "CUFF.16"; flanks "15753780-,15755089^"; structure "0,1-2^"; splice_chain ",15754394-15754505^";
chr1	juncbase	jcn_only_AD	1987001	1987923	.	+	.	gene_id "jcn_only_AD.1996"; transcript_id "jcn_only_AD.1996"; gene_name "CUFF.4"; flanks "1987001-,1987923^"; structure "1^,2^"; splice_chain "1987001^,1987315^";
chr1	juncbase	alternative_acceptor	1656202	1667256	.	+	.	gene_id "alternative_acceptor.1167"; transcript_id "alternative_acceptor.1167"; gene_name "CUFF.2"; flanks "1656202-,1667256^"; structure "1-,2-"; splice_chain "1661685-,1667256-";
chr1	juncbase	intron_retention	27432376	27429803	.	-	.	gene_id "intron_retention.1261"; transcript_id "intron_retention.1261"; gene_name "CUFF.32"; flanks "27432376-,27429803^"; structure "0,1^2-"; splice_chain ",27432376^27429803-";
chr1	juncbase	cassette	106161481	106148711	.	-	.	gene_id "cassette.933"; transcript_id "cassette.933"; gene_name "CUFF.84"; flanks "106161481-,106148711^"; structure "0,1-2^"; splice_chain ",106155566-106155522^";
chr1	juncbase	jcn_only_AD	167190195	167272711	.	+	.	gene_id "jcn_only_AD.1997"; transcript_id "jcn_only_AD.1997"; gene_name "CUFF.135"; flanks "167190195-,167272711^"; structure "1^,2^"; splice_chain "167190195^,167210847^";
chr1	juncbase	intron_retention	245133100	245180544	.	+	.	gene_id "intron_retention.1262"; transcript_id "intron_retention.1262"; gene_name "CUFF.180"; flanks "245133100-,245180544^"; structure "0,1^2-"; splice_chain ",245133100^245180544-";
chr1	juncbase	jcn_only_AA	16928338	16935003	.	-	.	gene_id "jcn_only_AA.1529"; transcript_id "jcn_only_AA.1529"; gene_name "CUFF.20"; flanks "16928338-,16935003^"; structure "1-,2-"; splice_chain "16928338-,16921508-";
chr1	juncbase	jcn_only_AA	16934186	16935003	.	-	.	gene_id "jcn_only_AA.1530"; transcript_id "jcn_only_AA.1530"; gene_name "CUFF.20"; flanks "16934186-,16935003^"; structure "1-,2-"; splice_chain "16934186-,16921508-";
chr1	juncbase	jcn_only_AA	33647022	33647595	.	-	.	gene_id "jcn_only_AA.1531"; transcript_id "jcn_only_AA.1531"; gene_name "CUFF.48"; flanks "33647022-,33647595^"; structure "1-,2-"; splice_chain "33647095-,33647022-";
chr1	juncbase	alternative_donor	2087531	2100957	.	+	.	gene_id "alternative_donor.1690"; transcript_id "alternative_donor.1690"; gene_name "CUFF.4"; flanks "2087531-,2100957^"; structure "1^,2^"; splice_chain "2087531^,2100556^";
chr1	juncbase	intron_retention	155180685	155181183	.	+	.	gene_id "intron_retention.1263"; transcript_id "intron_retention.1263"; gene_name ""; flanks "155180685-,155181183^"; structure "0,1^2-"; splice_chain ",155180685^155181183-";
chr1	juncbase	jcn_only_AD	31819587	31821676	.	+	.	gene_id "jcn_only_AD.1998"; transcript_id "jcn_only_AD.1998"; gene_name "CUFF.41"; flanks "31819587-,31821676^"; structure "1^,2^"; splice_chain "31819587^,31819665^";
chr1	juncbase	jcn_only_AD	167301772	167334704	.	+	.	gene_id "jcn_only_AD.1999"; transcript_id "jcn_only_AD.1999"; gene_name "CUFF.135"; flanks "167301772-,167334704^"; structure "1^,2^"; splice_chain "167301772^,167326758^";
chr1	juncbase	intron_retention	151158274	151158096	.	-	.	gene_id "intron_retention.1264"; transcript_id "intron_retention.1264"; gene_name "CUFF.104"; flanks "151158274-,151158096^"; structure "0,1^2-"; splice_chain ",151158274^151158096-";
chr1	juncbase	jcn_only_AA	156908305	156909340	.	-	.	gene_id "jcn_only_AA.1532"; transcript_id "jcn_only_AA.1532"; gene_name "CUFF.116"; flanks "156908305-,156909340^"; structure "1-,2-"; splice_chain "156909077-,156908305-";
chr1	juncbase	intron_retention	25558935	25558702	.	-	.	gene_id "intron_retention.1265"; transcript_id "intron_retention.1265"; gene_name "CUFF.27"; flanks "25558935-,25558702^"; structure "0,1^2-"; splice_chain ",25558935^25558702-";
chr1	juncbase	alternative_donor	174129055	174124835	.	-	.	gene_id "alternative_donor.1691"; transcript_id "alternative_donor.1691"; gene_name ""; flanks "174129055-,174124835^"; structure "1^,2^"; splice_chain "174129055^,174128025^";
chr1	juncbase	cassette	153921591	153921120	.	-	.	gene_id "cassette.934"; transcript_id "cassette.934"; gene_name "CUFF.110"; flanks "153921591-,153921120^"; structure "0,1-2^"; splice_chain ",153921376-153921310^";
chr1	juncbase	jcn_only_AA	32827136	32827331	.	-	.	gene_id "jcn_only_AA.1533"; transcript_id "jcn_only_AA.1533"; gene_name "CUFF.45"; flanks "32827136-,32827331^"; structure "1-,2-"; splice_chain "32827165-,32827136-";
chr1	juncbase	cassette	54360220	54370339	.	+	.	gene_id "cassette.935"; transcript_id "cassette.935"; gene_name "CUFF.57"; flanks "54360220-,54370339^"; structure "0,1-2^"; splice_chain ",54368730-54368939^";
chr1	juncbase	intron_retention	145578295	145578401	.	+	.	gene_id "intron_retention.1266"; transcript_id "intron_retention.1266"; gene_name "CUFF.97"; flanks "145578295-,145578401^"; structure "0,1^2-"; splice_chain ",145578295^145578401-";
chr1	juncbase	intron_retention	155180418	155181918	.	+	.	gene_id "intron_retention.1267"; transcript_id "intron_retention.1267"; gene_name ""; flanks "155180418-,155181918^"; structure "0,1^2-"; splice_chain ",155180418^155181918-";
chr1	juncbase	alternative_acceptor	2106752	2116022	.	+	.	gene_id "alternative_acceptor.1168"; transcript_id "alternative_acceptor.1168"; gene_name "CUFF.4"; flanks "2106752-,2116022^"; structure "1-,2-"; splice_chain "2113271-,2116022-";
chr1	juncbase	cassette	110214004	110217369	.	+	.	gene_id "cassette.936"; transcript_id "cassette.936"; gene_name "CUFF.86"; flanks "110214004-,110217369^"; structure "0,1-2^"; splice_chain ",110214095-110214205^";
chr1	juncbase	jcn_only_AA	222837490	222838651	.	+	.	gene_id "jcn_only_AA.1534"; transcript_id "jcn_only_AA.1534"; gene_name "CUFF.166"; flanks "222837490-,222838651^"; structure "1-,2-"; splice_chain "222838225-,222838651-";
chr1	juncbase	alternative_acceptor	16934186	16935003	.	-	.	gene_id "alternative_acceptor.1169"; transcript_id "alternative_acceptor.1169"; gene_name "CUFF.20"; flanks "16934186-,16935003^"; structure "1-,2-"; splice_chain "16934186-,16928338-";
chr1	juncbase	alternative_acceptor	16921508	16935003	.	-	.	gene_id "alternative_acceptor.1170"; transcript_id "alternative_acceptor.1170"; gene_name "CUFF.20"; flanks "16921508-,16935003^"; structure "1-,2-"; splice_chain "16928338-,16921508-";
chr1	juncbase	alternative_donor	106146785	106132407	.	-	.	gene_id "alternative_donor.1692"; transcript_id "alternative_donor.1692"; gene_name "CUFF.84"; flanks "106146785-,106132407^"; structure "1^,2^"; splice_chain "106146785^,106143253^";
chr1	juncbase	alternative_donor	106145899	106132407	.	-	.	gene_id "alternative_donor.1693"; transcript_id "alternative_donor.1693"; gene_name "CUFF.84"; flanks "106145899-,106132407^"; structure "1^,2^"; splice_chain "106145899^,106143253^";
chr1	juncbase	alternative_donor	106143892	106132407	.	-	.	gene_id "alternative_donor.1694"; transcript_id "alternative_donor.1694"; gene_name "CUFF.84"; flanks "106143892-,106132407^"; structure "1^,2^"; splice_chain "106143892^,106143253^";
chr1	juncbase	jcn_only_AD	156921365	156918290	.	-	.	gene_id "jcn_only_AD.2000"; transcript_id "jcn_only_AD.2000"; gene_name "CUFF.116,CUFF.28"; flanks "156921365-,156918290^"; structure "1^,2^"; splice_chain "156921365^,156918365^";
chr1	juncbase	intron_retention	153925281	153925126	.	-	.	gene_id "intron_retention.1268"; transcript_id "intron_retention.1268"; gene_name "CUFF.110"; flanks "153925281-,153925126^"; structure "0,1^2-"; splice_chain ",153925281^153925126-";
chr1	juncbase	cassette	196913068	196927021	.	+	.	gene_id "cassette.937"; transcript_id "cassette.937"; gene_name "CUFF.151"; flanks "196913068-,196927021^"; structure "0,1-2^"; splice_chain ",196919982-196920158^";
chr1	juncbase	intron_retention	222835674	222837340	.	+	.	gene_id "intron_retention.1269"; transcript_id "intron_retention.1269"; gene_name "CUFF.166"; flanks "222835674-,222837340^"; structure "0,1^2-"; splice_chain ",222835674^222837340-";
chr1	juncbase	alternative_donor	53883200	53878940	.	-	.	gene_id "alternative_donor.1695"; transcript_id "alternative_donor.1695"; gene_name "CUFF.54,CUFF.88"; flanks "53883200-,53878940^"; structure "1^,2^"; splice_chain "53883200^,53881073^";
chr1	juncbase	cassette	245133745	245222688	.	+	.	gene_id "cassette.938"; transcript_id "cassette.938"; gene_name "CUFF.180"; flanks "245133745-,245222688^"; structure "0,1-2^"; splice_chain ",245180544-245180628^";
chr1	juncbase	cassette	245165534	245222688	.	+	.	gene_id "cassette.939"; transcript_id "cassette.939"; gene_name "CUFF.180"; flanks "245165534-,245222688^"; structure "0,1-2^"; splice_chain ",245180544-245180628^";
chr1	juncbase	alternative_acceptor	2101043	2103494	.	+	.	gene_id "alternative_acceptor.1171"; transcript_id "alternative_acceptor.1171"; gene_name "CUFF.4"; flanks "2101043-,2103494^"; structure "1-,2-"; splice_chain "2102992-,2103494-";
chr1	juncbase	jcn_only_AA	156453222	156470278	.	-	.	gene_id "jcn_only_AA.1535"; transcript_id "jcn_only_AA.1535"; gene_name ""; flanks "156453222-,156470278^"; structure "1-,2-"; splice_chain "156469352-,156453222-";
chr1	juncbase	intron_retention	2100556	2100957	.	+	.	gene_id "intron_retention.1270"; transcript_id "intron_retention.1270"; gene_name ""; flanks "2100556-,2100957^"; structure "0,1^2-"; splice_chain ",2100556^2100957-";
chr1	juncbase	alternative_donor	213188955	213184800	.	-	.	gene_id "alternative_donor.1696"; transcript_id "alternative_donor.1696"; gene_name "CUFF.49"; flanks "213188955-,213184800^"; structure "1^,2^"; splice_chain "213188955^,213188491^";
chr1	juncbase	alternative_donor	31769943	31782891	.	+	.	gene_id "alternative_donor.1697"; transcript_id "alternative_donor.1697"; gene_name "CUFF.41"; flanks "31769943-,31782891^"; structure "1^,2^"; splice_chain "31769943^,31770060^";
chr1	juncbase	alternative_donor	31769922	31782891	.	+	.	gene_id "alternative_donor.1698"; transcript_id "alternative_donor.1698"; gene_name "CUFF.41"; flanks "31769922-,31782891^"; structure "1^,2^"; splice_chain "31769922^,31770060^";
chr1	juncbase	intron_retention	114424395	114423762	.	-	.	gene_id "intron_retention.1271"; transcript_id "intron_retention.1271"; gene_name ""; flanks "114424395-,114423762^"; structure "0,1^2-"; splice_chain ",114424395^114423762-";
chr1	juncbase	alternative_acceptor	78546544	78560636	.	+	.	gene_id "alternative_acceptor.1172"; transcript_id "alternative_acceptor.1172"; gene_name ""; flanks "78546544-,78560636^"; structure "1-,2-"; splice_chain "78558441-,78560636-";
chr1	juncbase	cassette	11074022	11078790	.	+	.	gene_id "cassette.940"; transcript_id "cassette.940"; gene_name "CUFF.9"; flanks "11074022-,11078790^"; structure "0,1-2^"; splice_chain ",11076901-11077064^";
chr1	juncbase	cassette	213178375	213173725	.	-	.	gene_id "cassette.941"; transcript_id "cassette.941"; gene_name "CUFF.163"; flanks "213178375-,213173725^"; structure "0,1-2^"; splice_chain ",213174254-213174128^";
chr1	juncbase	jcn_only_AA	16934186	16935003	.	-	.	gene_id "jcn_only_AA.1536"; transcript_id "jcn_only_AA.1536"; gene_name "CUFF.20"; flanks "16934186-,16935003^"; structure "1-,2-"; splice_chain "16934186-,16928338-";
chr1	juncbase	jcn_only_AA	16921508	16935003	.	-	.	gene_id "jcn_only_AA.1537"; transcript_id "jcn_only_AA.1537"; gene_name "CUFF.20"; flanks "16921508-,16935003^"; structure "1-,2-"; splice_chain "16928338-,16921508-";
chr1	juncbase	jcn_only_AD	247322308	247302059	.	-	.	gene_id "jcn_only_AD.2001"; transcript_id "jcn_only_AD.2001"; gene_name "CUFF.188"; flanks "247322308-,247302059^"; structure "1^,2^"; splice_chain "247322308^,247313160^";
chr1	juncbase	intron_retention	11083386	11084359	.	+	.	gene_id "intron_retention.1272"; transcript_id "intron_retention.1272"; gene_name "CUFF.9"; flanks "11083386-,11084359^"; structure "0,1^2-"; splice_chain ",11083386^11084359-";
chr1	juncbase	jcn_only_AA	16382018	16382173	.	+	.	gene_id "jcn_only_AA.1538"; transcript_id "jcn_only_AA.1538"; gene_name "CUFF.18"; flanks "16382018-,16382173^"; structure "1-,2-"; splice_chain "16382170-,16382173-";
chr1	juncbase	jcn_only_AA	161953125	161953386	.	-	.	gene_id "jcn_only_AA.1539"; transcript_id "jcn_only_AA.1539"; gene_name "CUFF.132"; flanks "161953125-,161953386^"; structure "1-,2-"; splice_chain "161953195-,161953125-";
chr1	juncbase	cassette	70820891	70832127	.	+	.	gene_id "cassette.942"; transcript_id "cassette.942"; gene_name "CUFF.68"; flanks "70820891-,70832127^"; structure "0,1-2^"; splice_chain ",70832010-70832011^";
chr1	juncbase	alternative_donor	167345392	167353094	.	+	.	gene_id "alternative_donor.1699"; transcript_id "alternative_donor.1699"; gene_name "CUFF.135"; flanks "167345392-,167353094^"; structure "1^,2^"; splice_chain "167345392^,167345824^";
chr1	juncbase	alternative_donor	110212193	110213909	.	+	.	gene_id "alternative_donor.1700"; transcript_id "alternative_donor.1700"; gene_name "CUFF.86"; flanks "110212193-,110213909^"; structure "1^,2^"; splice_chain "110212193^,110212856^";
chr1	juncbase	cassette	85725041	85724405	.	-	.	gene_id "cassette.943"; transcript_id "cassette.943"; gene_name "CUFF.72"; flanks "85725041-,85724405^"; structure "0,1-2^"; splice_chain ",85724744-85724618^";
chr1	juncbase	alternative_donor	54356967	54359987	.	+	.	gene_id "alternative_donor.1701"; transcript_id "alternative_donor.1701"; gene_name "CUFF.57"; flanks "54356967-,54359987^"; structure "1^,2^"; splice_chain "54356967^,54357949^";
chr1	juncbase	jcn_only_AA	11083386	11084359	.	+	.	gene_id "jcn_only_AA.1540"; transcript_id "jcn_only_AA.1540"; gene_name "CUFF.122,CUFF.9"; flanks "11083386-,11084359^"; structure "1-,2-"; splice_chain "11084121-,11084359-";
chr1	juncbase	jcn_only_AA	156450569	156452229	.	-	.	gene_id "jcn_only_AA.1541"; transcript_id "jcn_only_AA.1541"; gene_name "CUFF.114"; flanks "156450569-,156452229^"; structure "1-,2-"; splice_chain "156450763-,156450569-";
chr1	juncbase	cassette	167190195	167301707	.	+	.	gene_id "cassette.944"; transcript_id "cassette.944"; gene_name "CUFF.135"; flanks "167190195-,167301707^"; structure "0,1-2^"; splice_chain ",167272711-167272811^";
chr1	juncbase	cassette	167210847	167301707	.	+	.	gene_id "cassette.945"; transcript_id "cassette.945"; gene_name "CUFF.135"; flanks "167210847-,167301707^"; structure "0,1-2^"; splice_chain ",167272711-167272811^";
chr1	juncbase	alternative_acceptor	2005368	2066701	.	+	.	gene_id "alternative_acceptor.1173"; transcript_id "alternative_acceptor.1173"; gene_name ""; flanks "2005368-,2066701^"; structure "1-,2-"; splice_chain "2029786-,2066701-";
chr1	juncbase	cassette	32541423	32557276	.	+	.	gene_id "cassette.946"; transcript_id "cassette.946"; gene_name "CUFF.44"; flanks "32541423-,32557276^"; structure "0,1-2^"; splice_chain ",32542364-32542447^";
chr1	juncbase	cassette	32541423	32542765	.	+	.	gene_id "cassette.947"; transcript_id "cassette.947"; gene_name "CUFF.44"; flanks "32541423-,32542765^"; structure "0,1-2^"; splice_chain ",32542364-32542447^";
chr1	juncbase	jcn_only_AD	213188955	213184800	.	-	.	gene_id "jcn_only_AD.2002"; transcript_id "jcn_only_AD.2002"; gene_name "CUFF.49"; flanks "213188955-,213184800^"; structure "1^,2^"; splice_chain "213188955^,213188491^";
chr1	juncbase	jcn_only_AD	156449377	156449138	.	-	.	gene_id "jcn_only_AD.2003"; transcript_id "jcn_only_AD.2003"; gene_name "CUFF.114"; flanks "156449377-,156449138^"; structure "1^,2^"; splice_chain "156450626^,156449377^";
chr1	juncbase	jcn_only_AD	156449378	156449138	.	-	.	gene_id "jcn_only_AD.2004"; transcript_id "jcn_only_AD.2004"; gene_name "CUFF.114"; flanks "156449378-,156449138^"; structure "1^,2^"; splice_chain "156450626^,156449378^";
chr1	juncbase	intron_retention	160146352	160147309	.	+	.	gene_id "intron_retention.1273"; transcript_id "intron_retention.1273"; gene_name ""; flanks "160146352-,160147309^"; structure "0,1^2-"; splice_chain ",160146352^160147309-";
chr1	juncbase	jcn_only_AD	78445303	78546359	.	+	.	gene_id "jcn_only_AD.2005"; transcript_id "jcn_only_AD.2005"; gene_name "CUFF.69"; flanks "78445303-,78546359^"; structure "1^,2^"; splice_chain "78445303^,78512018^";
chr1	juncbase	jcn_only_AD	110211105	110211547	.	+	.	gene_id "jcn_only_AD.2006"; transcript_id "jcn_only_AD.2006"; gene_name "CUFF.86"; flanks "110211105-,110211547^"; structure "1^,2^"; splice_chain "110211105^,110211122^";
chr1	juncbase	cassette	25558595	25554726	.	-	.	gene_id "cassette.948"; transcript_id "cassette.948"; gene_name "CUFF.27"; flanks "25558595-,25554726^"; structure "0,1-2^"; splice_chain ",25555614-25555489^";
chr1	juncbase	alternative_donor	31769943	31782891	.	+	.	gene_id "alternative_donor.1702"; transcript_id "alternative_donor.1702"; gene_name "CUFF.41"; flanks "31769943-,31782891^"; structure "1^,2^"; splice_chain "31769922^,31769943^";
chr1	juncbase	alternative_donor	31770060	31782891	.	+	.	gene_id "alternative_donor.1703"; transcript_id "alternative_donor.1703"; gene_name "CUFF.41"; flanks "31770060-,31782891^"; structure "1^,2^"; splice_chain "31769922^,31770060^";
chr1	juncbase	cassette	28559432	28555534	.	-	.	gene_id "cassette.949"; transcript_id "cassette.949"; gene_name "CUFF.33"; flanks "28559432-,28555534^"; structure "0,1-2^"; splice_chain ",28556763-28556642^";
chr1	juncbase	intron_retention	28661597	28662305	.	+	.	gene_id "intron_retention.1274"; transcript_id "intron_retention.1274"; gene_name "CUFF.34"; flanks "28661597-,28662305^"; structure "0,1^2-"; splice_chain ",28661597^28662305-";
chr1	juncbase	jcn_only_AD	32560572	32566043	.	+	.	gene_id "jcn_only_AD.2007"; transcript_id "jcn_only_AD.2007"; gene_name "CUFF.44"; flanks "32560572-,32566043^"; structure "1^,2^"; splice_chain "32560572^,32561363^";
chr1	juncbase	cassette	230385017	230390964	.	+	.	gene_id "cassette.950"; transcript_id "cassette.950"; gene_name "CUFF.174"; flanks "230385017-,230390964^"; structure "0,1-2^"; splice_chain ",230386203-230386306^";
chr1	juncbase	jcn_only_AA	110212193	110213936	.	+	.	gene_id "jcn_only_AA.1542"; transcript_id "jcn_only_AA.1542"; gene_name "CUFF.86"; flanks "110212193-,110213936^"; structure "1-,2-"; splice_chain "110213909-,110213936-";
chr1	juncbase	alternative_donor	31769922	31782891	.	+	.	gene_id "alternative_donor.1704"; transcript_id "alternative_donor.1704"; gene_name "CUFF.41"; flanks "31769922-,31782891^"; structure "1^,2^"; splice_chain "31769922^,31769943^";
chr1	juncbase	alternative_donor	31770060	31782891	.	+	.	gene_id "alternative_donor.1705"; transcript_id "alternative_donor.1705"; gene_name "CUFF.41"; flanks "31770060-,31782891^"; structure "1^,2^"; splice_chain "31769943^,31770060^";
chr1	juncbase	jcn_only_AA	2106752	2116022	.	+	.	gene_id "jcn_only_AA.1543"; transcript_id "jcn_only_AA.1543"; gene_name "CUFF.4"; flanks "2106752-,2116022^"; structure "1-,2-"; splice_chain "2113271-,2116022-";
chr1	juncbase	jcn_only_AD	11082298	11083250	.	+	.	gene_id "jcn_only_AD.2008"; transcript_id "jcn_only_AD.2008"; gene_name "CUFF.9"; flanks "11082298-,11083250^"; structure "1^,2^"; splice_chain "11082298^,11082307^";
chr1	juncbase	cassette	153924494	153921860	.	-	.	gene_id "cassette.951"; transcript_id "cassette.951"; gene_name "CUFF.110"; flanks "153924494-,153921860^"; structure "0,1-2^"; splice_chain ",153924142-153923736^";
chr1	juncbase	alternative_donor	156921365	156918290	.	-	.	gene_id "alternative_donor.1706"; transcript_id "alternative_donor.1706"; gene_name "CUFF.116,CUFF.28"; flanks "156921365-,156918290^"; structure "1^,2^"; splice_chain "156921365^,156918365^";
chr1	juncbase	jcn_only_AA	2005368	2066701	.	+	.	gene_id "jcn_only_AA.1544"; transcript_id "jcn_only_AA.1544"; gene_name ""; flanks "2005368-,2066701^"; structure "1-,2-"; splice_chain "2029786-,2066701-";
chr1	juncbase	alternative_acceptor	70820790	70832127	.	+	.	gene_id "alternative_acceptor.1174"; transcript_id "alternative_acceptor.1174"; gene_name "CUFF.68,CUFF.86"; flanks "70820790-,70832127^"; structure "1-,2-"; splice_chain "70831829-,70832127-";
chr1	juncbase	jcn_only_AD	156446804	156445029	.	-	.	gene_id "jcn_only_AD.2009"; transcript_id "jcn_only_AD.2009"; gene_name "CUFF.114"; flanks "156446804-,156445029^"; structure "1^,2^"; splice_chain "156446804^,156446286^";
chr1	juncbase	intron_retention	156908941	156908305	.	-	.	gene_id "intron_retention.1275"; transcript_id "intron_retention.1275"; gene_name "CUFF.116"; flanks "156908941-,156908305^"; structure "0,1^2-"; splice_chain ",156908941^156908305-";
chr1	juncbase	jcn_only_AD	70820790	70831829	.	+	.	gene_id "jcn_only_AD.2010"; transcript_id "jcn_only_AD.2010"; gene_name ""; flanks "70820790-,70831829^"; structure "1^,2^"; splice_chain "70820790^,70820891^";
chr1	juncbase	cassette	156446804	156438812	.	-	.	gene_id "cassette.952"; transcript_id "cassette.952"; gene_name "CUFF.114"; flanks "156446804-,156438812^"; structure "0,1-2^"; splice_chain ",156445029-156444900^";
chr1	juncbase	intron_retention	110212193	110213909	.	+	.	gene_id "intron_retention.1276"; transcript_id "intron_retention.1276"; gene_name "CUFF.86"; flanks "110212193-,110213909^"; structure "0,1^2-"; splice_chain ",110212193^110213909-";
chr1	juncbase	alternative_donor	28655635	28657108	.	+	.	gene_id "alternative_donor.1707"; transcript_id "alternative_donor.1707"; gene_name "CUFF.34"; flanks "28655635-,28657108^"; structure "1^,2^"; splice_chain "28655635^,28655691^";
chr1	juncbase	intron_retention	11083386	11084121	.	+	.	gene_id "intron_retention.1277"; transcript_id "intron_retention.1277"; gene_name "CUFF.9"; flanks "11083386-,11084121^"; structure "0,1^2-"; splice_chain ",11083386^11084121-";
chr1	juncbase	alternative_donor	106145899	106132407	.	-	.	gene_id "alternative_donor.1708"; transcript_id "alternative_donor.1708"; gene_name ""; flanks "106145899-,106132407^"; structure "1^,2^"; splice_chain "106146785^,106145899^";
chr1	juncbase	alternative_donor	106143892	106132407	.	-	.	gene_id "alternative_donor.1709"; transcript_id "alternative_donor.1709"; gene_name ""; flanks "106143892-,106132407^"; structure "1^,2^"; splice_chain "106146785^,106143892^";
chr1	juncbase	alternative_donor	106143253	106132407	.	-	.	gene_id "alternative_donor.1710"; transcript_id "alternative_donor.1710"; gene_name ""; flanks "106143253-,106132407^"; structure "1^,2^"; splice_chain "106146785^,106143253^";
chr1	juncbase	alternative_donor	156449378	156449138	.	-	.	gene_id "alternative_donor.1711"; transcript_id "alternative_donor.1711"; gene_name "CUFF.114"; flanks "156449378-,156449138^"; structure "1^,2^"; splice_chain "156449378^,156449377^";
chr1	juncbase	alternative_donor	156450626	156449138	.	-	.	gene_id "alternative_donor.1712"; transcript_id "alternative_donor.1712"; gene_name "CUFF.114"; flanks "156450626-,156449138^"; structure "1^,2^"; splice_chain "156450626^,156449377^";
chr9	juncbase	jcn_only_AA	34993441	34996392	.	+	.	gene_id "jcn_only_AA.1545"; transcript_id "jcn_only_AA.1545"; gene_name ""; flanks "34993441-,34996392^"; structure "1-,2-"; splice_chain "34996262-,34996392-";
chr9	juncbase	cassette	15225915	15214247	.	-	.	gene_id "cassette.953"; transcript_id "cassette.953"; gene_name "CUFF.1119"; flanks "15225915-,15214247^"; structure "0,1-2^"; splice_chain ",15224503-15224358^";
chr9	juncbase	cassette	43908523	43915826	.	+	.	gene_id "cassette.954"; transcript_id "cassette.954"; gene_name "CUFF.1136"; flanks "43908523-,43915826^"; structure "0,1-2^"; splice_chain ",43915360-43915590^";
chr9	juncbase	cassette	107690216	107651476	.	-	.	gene_id "cassette.955"; transcript_id "cassette.955"; gene_name "CUFF.1163"; flanks "107690216-,107651476^"; structure "0,1-2^"; splice_chain ",107666052-107665895^";
chr9	juncbase	alternative_donor	43907537	43908436	.	+	.	gene_id "alternative_donor.1713"; transcript_id "alternative_donor.1713"; gene_name "CUFF.1136"; flanks "43907537-,43908436^"; structure "1^,2^"; splice_chain "43907537^,43908210^";
chr9	juncbase	intron_retention	130941523	130941183	.	-	.	gene_id "intron_retention.1278"; transcript_id "intron_retention.1278"; gene_name ""; flanks "130941523-,130941183^"; structure "0,1^2-"; splice_chain ",130941523^130941183-";
chr9	juncbase	intron_retention	139744589	139744958	.	+	.	gene_id "intron_retention.1279"; transcript_id "intron_retention.1279"; gene_name "CUFF.1200"; flanks "139744589-,139744958^"; structure "0,1^2-"; splice_chain ",139744589^139744958-";
chr9	juncbase	alternative_donor	43915897	43920249	.	+	.	gene_id "alternative_donor.1714"; transcript_id "alternative_donor.1714"; gene_name "CUFF.1136"; flanks "43915897-,43920249^"; structure "1^,2^"; splice_chain "43915897^,43915979^";
chr9	juncbase	jcn_only_AD	86498728	86485547	.	-	.	gene_id "jcn_only_AD.2011"; transcript_id "jcn_only_AD.2011"; gene_name "CUFF.1148"; flanks "86498728-,86485547^"; structure "1^,2^"; splice_chain "86498728^,86495212^";
chr9	juncbase	jcn_only_AD	43885072	43890296	.	+	.	gene_id "jcn_only_AD.2012"; transcript_id "jcn_only_AD.2012"; gene_name "CUFF.1136"; flanks "43885072-,43890296^"; structure "1^,2^"; splice_chain "43885072^,43887733^";
chr9	juncbase	alternative_donor	139795128	139802522	.	+	.	gene_id "alternative_donor.1715"; transcript_id "alternative_donor.1715"; gene_name "CUFF.1198"; flanks "139795128-,139802522^"; structure "1^,2^"; splice_chain "139794972^,139795128^";
chr9	juncbase	alternative_donor	139796848	139802522	.	+	.	gene_id "alternative_donor.1716"; transcript_id "alternative_donor.1716"; gene_name "CUFF.1198"; flanks "139796848-,139802522^"; structure "1^,2^"; splice_chain "139794972^,139796848^";
chr9	juncbase	cassette	123550047	123538504	.	-	.	gene_id "cassette.956"; transcript_id "cassette.956"; gene_name "CUFF.1170"; flanks "123550047-,123538504^"; structure "0,1-2^"; splice_chain ",123540823-123540629^";
chr9	juncbase	alternative_donor	117350200	117354832	.	+	.	gene_id "alternative_donor.1717"; transcript_id "alternative_donor.1717"; gene_name "CUFF.1168"; flanks "117350200-,117354832^"; structure "1^,2^"; splice_chain "117350200^,117350398^";
chr9	juncbase	jcn_only_AD	130929818	130929443	.	-	.	gene_id "jcn_only_AD.2013"; transcript_id "jcn_only_AD.2013"; gene_name "CUFF.1186"; flanks "130929818-,130929443^"; structure "1^,2^"; splice_chain "130931331^,130929818^";
chr9	juncbase	jcn_only_AD	130931355	130929443	.	-	.	gene_id "jcn_only_AD.2014"; transcript_id "jcn_only_AD.2014"; gene_name "CUFF.1186"; flanks "130931355-,130929443^"; structure "1^,2^"; splice_chain "130931355^,130931331^";
chr9	juncbase	intron_retention	130940988	130940769	.	-	.	gene_id "intron_retention.1280"; transcript_id "intron_retention.1280"; gene_name "CUFF.1186"; flanks "130940988-,130940769^"; structure "0,1^2-"; splice_chain ",130940988^130940769-";
chr9	juncbase	cassette	133333976	133342112	.	+	.	gene_id "cassette.957"; transcript_id "cassette.957"; gene_name "CUFF.1188"; flanks "133333976-,133342112^"; structure "0,1-2^"; splice_chain ",133339498-133339554^";
chr9	juncbase	cassette	131013219	131016933	.	+	.	gene_id "cassette.958"; transcript_id "cassette.958"; gene_name "CUFF.1185"; flanks "131013219-,131016933^"; structure "0,1-2^"; splice_chain ",131015380-131015416^";
chr9	juncbase	cassette	133320382	133327611	.	+	.	gene_id "cassette.959"; transcript_id "cassette.959"; gene_name "CUFF.1188"; flanks "133320382-,133327611^"; structure "0,1-2^"; splice_chain ",133325659-133325720^";
chr9	juncbase	alternative_donor	125613379	125612101	.	-	.	gene_id "alternative_donor.1718"; transcript_id "alternative_donor.1718"; gene_name ""; flanks "125613379-,125612101^"; structure "1^,2^"; splice_chain "125613379^,125613360^";
chr9	juncbase	intron_retention	130953711	130953141	.	-	.	gene_id "intron_retention.1281"; transcript_id "intron_retention.1281"; gene_name ""; flanks "130953711-,130953141^"; structure "0,1^2-"; splice_chain ",130953711^130953141-";
chr9	juncbase	intron_retention	130929374	130929159	.	-	.	gene_id "intron_retention.1282"; transcript_id "intron_retention.1282"; gene_name "CUFF.1186"; flanks "130929374-,130929159^"; structure "0,1^2-"; splice_chain ",130929374^130929159-";
chr9	juncbase	alternative_donor	125027217	125033232	.	+	.	gene_id "alternative_donor.1719"; transcript_id "alternative_donor.1719"; gene_name "CUFF.1175"; flanks "125027217-,125033232^"; structure "1^,2^"; splice_chain "125027217^,125028059^";
chr9	juncbase	intron_retention	130953003	130948013	.	-	.	gene_id "intron_retention.1283"; transcript_id "intron_retention.1283"; gene_name ""; flanks "130953003-,130948013^"; structure "0,1^2-"; splice_chain ",130953003^130948013-";
chr9	juncbase	jcn_only_AA	135742340	135750502	.	-	.	gene_id "jcn_only_AA.1546"; transcript_id "jcn_only_AA.1546"; gene_name "CUFF.1192"; flanks "135742340-,135750502^"; structure "1-,2-"; splice_chain "135749826-,135742340-";
chr9	juncbase	alternative_donor	15189702	15188130	.	-	.	gene_id "alternative_donor.1720"; transcript_id "alternative_donor.1720"; gene_name "CUFF.1178"; flanks "15189702-,15188130^"; structure "1^,2^"; splice_chain "15189702^,15189572^";
chr9	juncbase	alternative_donor	135703400	135702441	.	-	.	gene_id "alternative_donor.1721"; transcript_id "alternative_donor.1721"; gene_name "CUFF.1178,CUFF.1192"; flanks "135703400-,135702441^"; structure "1^,2^"; splice_chain "135703400^,135702694^";
chr9	juncbase	jcn_only_AD	131008782	131009654	.	+	.	gene_id "jcn_only_AD.2015"; transcript_id "jcn_only_AD.2015"; gene_name "CUFF.1185"; flanks "131008782-,131009654^"; structure "1^,2^"; splice_chain "131008782^,131009402^";
chr9	juncbase	jcn_only_AA	43853616	43861003	.	+	.	gene_id "jcn_only_AA.1547"; transcript_id "jcn_only_AA.1547"; gene_name "CUFF.1136"; flanks "43853616-,43861003^"; structure "1-,2-"; splice_chain "43854069-,43861003-";
chr9	juncbase	jcn_only_AA	43853616	43861006	.	+	.	gene_id "jcn_only_AA.1548"; transcript_id "jcn_only_AA.1548"; gene_name "CUFF.1136"; flanks "43853616-,43861006^"; structure "1-,2-"; splice_chain "43854069-,43861006-";
chr9	juncbase	alternative_donor	133355187	133355772	.	+	.	gene_id "alternative_donor.1722"; transcript_id "alternative_donor.1722"; gene_name "CUFF.1188"; flanks "133355187-,133355772^"; structure "1^,2^"; splice_chain "133355187^,133355286^";
chr9	juncbase	cassette	95588860	95599059	.	+	.	gene_id "cassette.960"; transcript_id "cassette.960"; gene_name "CUFF.1152"; flanks "95588860-,95599059^"; structure "0,1-2^"; splice_chain ",95591220-95591445^";
chr9	juncbase	cassette	125033354	125047448	.	+	.	gene_id "cassette.961"; transcript_id "cassette.961"; gene_name "CUFF.1175"; flanks "125033354-,125047448^"; structure "0,1-2^"; splice_chain ",125042722-125042877^";
chr9	juncbase	jcn_only_AD	104295735	104293841	.	-	.	gene_id "jcn_only_AD.2016"; transcript_id "jcn_only_AD.2016"; gene_name "CUFF.1159"; flanks "104295735-,104293841^"; structure "1^,2^"; splice_chain "104295735^,104294959^";
chr9	juncbase	jcn_only_AD	130931331	130929443	.	-	.	gene_id "jcn_only_AD.2017"; transcript_id "jcn_only_AD.2017"; gene_name "CUFF.1186"; flanks "130931331-,130929443^"; structure "1^,2^"; splice_chain "130931331^,130929818^";
chr9	juncbase	jcn_only_AD	130931355	130929443	.	-	.	gene_id "jcn_only_AD.2018"; transcript_id "jcn_only_AD.2018"; gene_name "CUFF.1186"; flanks "130931355-,130929443^"; structure "1^,2^"; splice_chain "130931355^,130929818^";
chr9	juncbase	intron_retention	130941352	130941183	.	-	.	gene_id "intron_retention.1284"; transcript_id "intron_retention.1284"; gene_name ""; flanks "130941352-,130941183^"; structure "0,1^2-"; splice_chain ",130941352^130941183-";
chr9	juncbase	intron_retention	15186942	15185404	.	-	.	gene_id "intron_retention.1285"; transcript_id "intron_retention.1285"; gene_name "CUFF.1119"; flanks "15186942-,15185404^"; structure "0,1^2-"; splice_chain ",15186942^15185404-";
chr9	juncbase	alternative_acceptor	123550464	123555427	.	-	.	gene_id "alternative_acceptor.1175"; transcript_id "alternative_acceptor.1175"; gene_name "CUFF.1170"; flanks "123550464-,123555427^"; structure "1-,2-"; splice_chain "123550556-,123550464-";
chr9	juncbase	cassette	46662448	46661548	.	-	.	gene_id "cassette.962"; transcript_id "cassette.962"; gene_name "CUFF.1139"; flanks "46662448-,46661548^"; structure "0,1-2^"; splice_chain ",46661860-46661771^";
chr9	juncbase	cassette	86523367	86514719	.	-	.	gene_id "cassette.963"; transcript_id "cassette.963"; gene_name "CUFF.1148"; flanks "86523367-,86514719^"; structure "0,1-2^"; splice_chain ",86518933-86517975^";
chr9	juncbase	intron_retention	131010214	131010862	.	+	.	gene_id "intron_retention.1286"; transcript_id "intron_retention.1286"; gene_name "CUFF.1185"; flanks "131010214-,131010862^"; structure "0,1^2-"; splice_chain ",131010214^131010862-";
chr9	juncbase	jcn_only_AA	130988452	130996300	.	+	.	gene_id "jcn_only_AA.1549"; transcript_id "jcn_only_AA.1549"; gene_name "CUFF.1185"; flanks "130988452-,130996300^"; structure "1-,2-"; splice_chain "130994265-,130996300-";
chr9	juncbase	alternative_donor	130994403	130996300	.	+	.	gene_id "alternative_donor.1723"; transcript_id "alternative_donor.1723"; gene_name "CUFF.1185"; flanks "130994403-,130996300^"; structure "1^,2^"; splice_chain "130986668^,130994403^";
chr9	juncbase	alternative_donor	130988452	130996300	.	+	.	gene_id "alternative_donor.1724"; transcript_id "alternative_donor.1724"; gene_name "CUFF.1185"; flanks "130988452-,130996300^"; structure "1^,2^"; splice_chain "130986668^,130988452^";
chr9	juncbase	alternative_donor	130931331	130929443	.	-	.	gene_id "alternative_donor.1725"; transcript_id "alternative_donor.1725"; gene_name "CUFF.1186"; flanks "130931331-,130929443^"; structure "1^,2^"; splice_chain "130931331^,130929818^";
chr9	juncbase	alternative_donor	130931355	130929443	.	-	.	gene_id "alternative_donor.1726"; transcript_id "alternative_donor.1726"; gene_name "CUFF.1186"; flanks "130931355-,130929443^"; structure "1^,2^"; splice_chain "130931355^,130929818^";
chr9	juncbase	jcn_only_AD	34991413	34993197	.	+	.	gene_id "jcn_only_AD.2019"; transcript_id "jcn_only_AD.2019"; gene_name "CUFF.1129"; flanks "34991413-,34993197^"; structure "1^,2^"; splice_chain "34991413^,34992983^";
chr9	juncbase	cassette	130952967	130950213	.	-	.	gene_id "cassette.964"; transcript_id "cassette.964"; gene_name "CUFF.1186"; flanks "130952967-,130950213^"; structure "0,1-2^"; splice_chain ",130952723-130952608^";
chr9	juncbase	cassette	130952967	130948055	.	-	.	gene_id "cassette.965"; transcript_id "cassette.965"; gene_name "CUFF.1186"; flanks "130952967-,130948055^"; structure "0,1-2^"; splice_chain ",130952723-130952608^";
chr9	juncbase	intron_retention	130929818	130929443	.	-	.	gene_id "intron_retention.1287"; transcript_id "intron_retention.1287"; gene_name "CUFF.1186"; flanks "130929818-,130929443^"; structure "0,1^2-"; splice_chain ",130929818^130929443-";
chr9	juncbase	jcn_only_AD	130986668	130996300	.	+	.	gene_id "jcn_only_AD.2020"; transcript_id "jcn_only_AD.2020"; gene_name "CUFF.1185"; flanks "130986668-,130996300^"; structure "1^,2^"; splice_chain "130986668^,130994403^";
chr9	juncbase	jcn_only_AD	130988452	130996300	.	+	.	gene_id "jcn_only_AD.2021"; transcript_id "jcn_only_AD.2021"; gene_name "CUFF.1185"; flanks "130988452-,130996300^"; structure "1^,2^"; splice_chain "130988452^,130994403^";
chr9	juncbase	intron_retention	12191	12293	.	+	.	gene_id "intron_retention.1288"; transcript_id "intron_retention.1288"; gene_name "CUFF.1118"; flanks "12191-,12293^"; structure "0,1^2-"; splice_chain ",12191^12293-";
chr9	juncbase	jcn_only_AD	15189702	15188130	.	-	.	gene_id "jcn_only_AD.2022"; transcript_id "jcn_only_AD.2022"; gene_name "CUFF.1178"; flanks "15189702-,15188130^"; structure "1^,2^"; splice_chain "15189702^,15189572^";
chr9	juncbase	alternative_donor	123555427	123550556	.	-	.	gene_id "alternative_donor.1727"; transcript_id "alternative_donor.1727"; gene_name "CUFF.1170,CUFF.1186"; flanks "123555427-,123550556^"; structure "1^,2^"; splice_chain "123555427^,123555165^";
chr9	juncbase	alternative_acceptor	131483809	131483930	.	-	.	gene_id "alternative_acceptor.1176"; transcript_id "alternative_acceptor.1176"; gene_name "CUFF.1187"; flanks "131483809-,131483930^"; structure "1-,2-"; splice_chain "131483809-,131483759-";
chr9	juncbase	alternative_acceptor	131483781	131483930	.	-	.	gene_id "alternative_acceptor.1177"; transcript_id "alternative_acceptor.1177"; gene_name "CUFF.1187"; flanks "131483781-,131483930^"; structure "1-,2-"; splice_chain "131483781-,131483759-";
chr9	juncbase	jcn_only_AD	130966465	130953141	.	-	.	gene_id "jcn_only_AD.2023"; transcript_id "jcn_only_AD.2023"; gene_name ""; flanks "130966465-,130953141^"; structure "1^,2^"; splice_chain "130966465^,130953559^";
chr9	juncbase	jcn_only_AD	130954011	130953141	.	-	.	gene_id "jcn_only_AD.2024"; transcript_id "jcn_only_AD.2024"; gene_name ""; flanks "130954011-,130953141^"; structure "1^,2^"; splice_chain "130954011^,130953559^";
chr9	juncbase	jcn_only_AD	130953711	130953141	.	-	.	gene_id "jcn_only_AD.2025"; transcript_id "jcn_only_AD.2025"; gene_name ""; flanks "130953711-,130953141^"; structure "1^,2^"; splice_chain "130953711^,130953559^";
chr9	juncbase	jcn_only_AD	130954134	130953141	.	-	.	gene_id "jcn_only_AD.2026"; transcript_id "jcn_only_AD.2026"; gene_name ""; flanks "130954134-,130953141^"; structure "1^,2^"; splice_chain "130954134^,130953559^";
chr9	juncbase	jcn_only_AA	131483759	131483930	.	-	.	gene_id "jcn_only_AA.1550"; transcript_id "jcn_only_AA.1550"; gene_name "CUFF.1187"; flanks "131483759-,131483930^"; structure "1-,2-"; splice_chain "131483781-,131483759-";
chr9	juncbase	jcn_only_AA	131483809	131483930	.	-	.	gene_id "jcn_only_AA.1551"; transcript_id "jcn_only_AA.1551"; gene_name "CUFF.1187"; flanks "131483809-,131483930^"; structure "1-,2-"; splice_chain "131483809-,131483781-";
chr9	juncbase	jcn_only_AA	15214247	15249916	.	-	.	gene_id "jcn_only_AA.1552"; transcript_id "jcn_only_AA.1552"; gene_name ""; flanks "15214247-,15249916^"; structure "1-,2-"; splice_chain "15249685-,15214247-";
chr9	juncbase	jcn_only_AD	117350200	117354832	.	+	.	gene_id "jcn_only_AD.2027"; transcript_id "jcn_only_AD.2027"; gene_name "CUFF.1168"; flanks "117350200-,117354832^"; structure "1^,2^"; splice_chain "117350200^,117350398^";
chr9	juncbase	intron_retention	130931331	130929443	.	-	.	gene_id "intron_retention.1289"; transcript_id "intron_retention.1289"; gene_name "CUFF.1186"; flanks "130931331-,130929443^"; structure "0,1^2-"; splice_chain ",130931331^130929443-";
chr9	juncbase	alternative_donor	130941268	130941183	.	-	.	gene_id "alternative_donor.1728"; transcript_id "alternative_donor.1728"; gene_name "CUFF.1186"; flanks "130941268-,130941183^"; structure "1^,2^"; splice_chain "130941523^,130941268^";
chr9	juncbase	alternative_donor	130941352	130941183	.	-	.	gene_id "alternative_donor.1729"; transcript_id "alternative_donor.1729"; gene_name "CUFF.1186"; flanks "130941352-,130941183^"; structure "1^,2^"; splice_chain "130941523^,130941352^";
chr9	juncbase	cassette	35396934	35397632	.	+	.	gene_id "cassette.966"; transcript_id "cassette.966"; gene_name "CUFF.1131"; flanks "35396934-,35397632^"; structure "0,1-2^"; splice_chain ",35397164-35397307^";
chr9	juncbase	jcn_only_AA	43853616	43861003	.	+	.	gene_id "jcn_only_AA.1553"; transcript_id "jcn_only_AA.1553"; gene_name "CUFF.1136"; flanks "43853616-,43861003^"; structure "1-,2-"; splice_chain "43861003-,43861006-";
chr9	juncbase	jcn_only_AA	43853616	43854069	.	+	.	gene_id "jcn_only_AA.1554"; transcript_id "jcn_only_AA.1554"; gene_name "CUFF.1136"; flanks "43853616-,43854069^"; structure "1-,2-"; splice_chain "43854069-,43861006-";
chr9	juncbase	cassette	135753559	135742340	.	-	.	gene_id "cassette.967"; transcript_id "cassette.967"; gene_name "CUFF.1192"; flanks "135753559-,135742340^"; structure "0,1-2^"; splice_chain ",135750586-135750502^";
chr9	juncbase	jcn_only_AD	130994403	130996300	.	+	.	gene_id "jcn_only_AD.2028"; transcript_id "jcn_only_AD.2028"; gene_name "CUFF.1185"; flanks "130994403-,130996300^"; structure "1^,2^"; splice_chain "130988452^,130994403^";
chr9	juncbase	jcn_only_AD	130986668	130996300	.	+	.	gene_id "jcn_only_AD.2029"; transcript_id "jcn_only_AD.2029"; gene_name "CUFF.1185"; flanks "130986668-,130996300^"; structure "1^,2^"; splice_chain "130986668^,130988452^";
chr9	juncbase	jcn_only_AD	46687554	46686829	.	-	.	gene_id "jcn_only_AD.2030"; transcript_id "jcn_only_AD.2030"; gene_name "CUFF.1148"; flanks "46687554-,46686829^"; structure "1^,2^"; splice_chain "46687554^,46687373^";
chr9	juncbase	jcn_only_AA	125616860	125617463	.	-	.	gene_id "jcn_only_AA.1555"; transcript_id "jcn_only_AA.1555"; gene_name "CUFF.1178"; flanks "125616860-,125617463^"; structure "1-,2-"; splice_chain "125616894-,125616860-";
chr9	juncbase	jcn_only_AA	131008782	131009654	.	+	.	gene_id "jcn_only_AA.1556"; transcript_id "jcn_only_AA.1556"; gene_name "CUFF.1185"; flanks "131008782-,131009654^"; structure "1-,2-"; splice_chain "131009216-,131009654-";
chr9	juncbase	intron_retention	34990809	34993197	.	+	.	gene_id "intron_retention.1290"; transcript_id "intron_retention.1290"; gene_name "CUFF.1129"; flanks "34990809-,34993197^"; structure "0,1^2-"; splice_chain ",34990809^34993197-";
chr9	juncbase	jcn_only_AD	123555427	123550556	.	-	.	gene_id "jcn_only_AD.2031"; transcript_id "jcn_only_AD.2031"; gene_name "CUFF.1170,CUFF.1186"; flanks "123555427-,123550556^"; structure "1^,2^"; splice_chain "123555427^,123555165^";
chr9	juncbase	jcn_only_AD	130994403	130996300	.	+	.	gene_id "jcn_only_AD.2032"; transcript_id "jcn_only_AD.2032"; gene_name "CUFF.1185"; flanks "130994403-,130996300^"; structure "1^,2^"; splice_chain "130986668^,130994403^";
chr9	juncbase	jcn_only_AD	130988452	130996300	.	+	.	gene_id "jcn_only_AD.2033"; transcript_id "jcn_only_AD.2033"; gene_name "CUFF.1185"; flanks "130988452-,130996300^"; structure "1^,2^"; splice_chain "130986668^,130988452^";
chr9	juncbase	jcn_only_AD	130966465	130953141	.	-	.	gene_id "jcn_only_AD.2034"; transcript_id "jcn_only_AD.2034"; gene_name ""; flanks "130966465-,130953141^"; structure "1^,2^"; splice_chain "130966465^,130954134^";
chr9	juncbase	jcn_only_AD	130954011	130953141	.	-	.	gene_id "jcn_only_AD.2035"; transcript_id "jcn_only_AD.2035"; gene_name ""; flanks "130954011-,130953141^"; structure "1^,2^"; splice_chain "130954134^,130954011^";
chr9	juncbase	jcn_only_AD	130953711	130953141	.	-	.	gene_id "jcn_only_AD.2036"; transcript_id "jcn_only_AD.2036"; gene_name ""; flanks "130953711-,130953141^"; structure "1^,2^"; splice_chain "130954134^,130953711^";
chr9	juncbase	jcn_only_AD	130953559	130953141	.	-	.	gene_id "jcn_only_AD.2037"; transcript_id "jcn_only_AD.2037"; gene_name ""; flanks "130953559-,130953141^"; structure "1^,2^"; splice_chain "130954134^,130953559^";
chr9	juncbase	jcn_only_AD	130929818	130929443	.	-	.	gene_id "jcn_only_AD.2038"; transcript_id "jcn_only_AD.2038"; gene_name "CUFF.1186"; flanks "130929818-,130929443^"; structure "1^,2^"; splice_chain "130931355^,130929818^";
chr9	juncbase	jcn_only_AD	130931331	130929443	.	-	.	gene_id "jcn_only_AD.2039"; transcript_id "jcn_only_AD.2039"; gene_name "CUFF.1186"; flanks "130931331-,130929443^"; structure "1^,2^"; splice_chain "130931355^,130931331^";
chr9	juncbase	intron_retention	34990608	34993197	.	+	.	gene_id "intron_retention.1291"; transcript_id "intron_retention.1291"; gene_name "CUFF.1129"; flanks "34990608-,34993197^"; structure "0,1^2-"; splice_chain ",34990608^34993197-";
chr9	juncbase	jcn_only_AA	131484853	131486273	.	-	.	gene_id "jcn_only_AA.1557"; transcript_id "jcn_only_AA.1557"; gene_name "CUFF.1187"; flanks "131484853-,131486273^"; structure "1-,2-"; splice_chain "131485018-,131484853-";
chr9	juncbase	jcn_only_AA	130943078	130947826	.	-	.	gene_id "jcn_only_AA.1558"; transcript_id "jcn_only_AA.1558"; gene_name "CUFF.1186"; flanks "130943078-,130947826^"; structure "1-,2-"; splice_chain "130943093-,130943078-";
chr9	juncbase	intron_retention	131486273	131484853	.	-	.	gene_id "intron_retention.1292"; transcript_id "intron_retention.1292"; gene_name "CUFF.1187"; flanks "131486273-,131484853^"; structure "0,1^2-"; splice_chain ",131486273^131484853-";
chr9	juncbase	cassette	43861206	43884945	.	+	.	gene_id "cassette.968"; transcript_id "cassette.968"; gene_name "CUFF.1136"; flanks "43861206-,43884945^"; structure "0,1-2^"; splice_chain ",43875989-43876145^";
chr9	juncbase	jcn_only_AD	130966465	130953141	.	-	.	gene_id "jcn_only_AD.2040"; transcript_id "jcn_only_AD.2040"; gene_name ""; flanks "130966465-,130953141^"; structure "1^,2^"; splice_chain "130966465^,130954011^";
chr9	juncbase	jcn_only_AD	130953711	130953141	.	-	.	gene_id "jcn_only_AD.2041"; transcript_id "jcn_only_AD.2041"; gene_name ""; flanks "130953711-,130953141^"; structure "1^,2^"; splice_chain "130954011^,130953711^";
chr9	juncbase	jcn_only_AD	130953559	130953141	.	-	.	gene_id "jcn_only_AD.2042"; transcript_id "jcn_only_AD.2042"; gene_name ""; flanks "130953559-,130953141^"; structure "1^,2^"; splice_chain "130954011^,130953559^";
chr9	juncbase	jcn_only_AD	130954134	130953141	.	-	.	gene_id "jcn_only_AD.2043"; transcript_id "jcn_only_AD.2043"; gene_name ""; flanks "130954134-,130953141^"; structure "1^,2^"; splice_chain "130954134^,130954011^";
chr9	juncbase	alternative_acceptor	43907537	43908436	.	+	.	gene_id "alternative_acceptor.1178"; transcript_id "alternative_acceptor.1178"; gene_name "CUFF.1136"; flanks "43907537-,43908436^"; structure "1-,2-"; splice_chain "43908112-,43908436-";
chr9	juncbase	alternative_donor	130986668	130996300	.	+	.	gene_id "alternative_donor.1730"; transcript_id "alternative_donor.1730"; gene_name "CUFF.1185"; flanks "130986668-,130996300^"; structure "1^,2^"; splice_chain "130986668^,130994403^";
chr9	juncbase	alternative_donor	130988452	130996300	.	+	.	gene_id "alternative_donor.1731"; transcript_id "alternative_donor.1731"; gene_name "CUFF.1185"; flanks "130988452-,130996300^"; structure "1^,2^"; splice_chain "130988452^,130994403^";
chr9	juncbase	jcn_only_AD	130941523	130941183	.	-	.	gene_id "jcn_only_AD.2044"; transcript_id "jcn_only_AD.2044"; gene_name "CUFF.1119"; flanks "130941523-,130941183^"; structure "1^,2^"; splice_chain "130941523^,130941268^";
chr9	juncbase	jcn_only_AD	130941352	130941183	.	-	.	gene_id "jcn_only_AD.2045"; transcript_id "jcn_only_AD.2045"; gene_name "CUFF.1119"; flanks "130941352-,130941183^"; structure "1^,2^"; splice_chain "130941352^,130941268^";
chr9	juncbase	jcn_only_AD	35162302	35228012	.	+	.	gene_id "jcn_only_AD.2046"; transcript_id "jcn_only_AD.2046"; gene_name "CUFF.1131"; flanks "35162302-,35228012^"; structure "1^,2^"; splice_chain "35162302^,35227930^";
chr9	juncbase	alternative_acceptor	116795008	116798580	.	+	.	gene_id "alternative_acceptor.1179"; transcript_id "alternative_acceptor.1179"; gene_name "CUFF.1166"; flanks "116795008-,116798580^"; structure "1-,2-"; splice_chain "116797471-,116798580-";
chr9	juncbase	intron_retention	131486231	131484853	.	-	.	gene_id "intron_retention.1293"; transcript_id "intron_retention.1293"; gene_name "CUFF.1187"; flanks "131486231-,131484853^"; structure "0,1^2-"; splice_chain ",131486231^131484853-";
chr9	juncbase	jcn_only_AA	15250008	15267912	.	-	.	gene_id "jcn_only_AA.1559"; transcript_id "jcn_only_AA.1559"; gene_name "CUFF.1119"; flanks "15250008-,15267912^"; structure "1-,2-"; splice_chain "15250008-,15226010-";
chr9	juncbase	jcn_only_AA	15211395	15267912	.	-	.	gene_id "jcn_only_AA.1560"; transcript_id "jcn_only_AA.1560"; gene_name "CUFF.1119"; flanks "15211395-,15267912^"; structure "1-,2-"; splice_chain "15226010-,15211395-";
chr9	juncbase	intron_retention	34709497	34709424	.	-	.	gene_id "intron_retention.1294"; transcript_id "intron_retention.1294"; gene_name "CUFF.1128"; flanks "34709497-,34709424^"; structure "0,1^2-"; splice_chain ",34709497^34709424-";
chr9	juncbase	alternative_donor	130941523	130941183	.	-	.	gene_id "alternative_donor.1732"; transcript_id "alternative_donor.1732"; gene_name "CUFF.1119"; flanks "130941523-,130941183^"; structure "1^,2^"; splice_chain "130941523^,130941268^";
chr9	juncbase	alternative_donor	130941352	130941183	.	-	.	gene_id "alternative_donor.1733"; transcript_id "alternative_donor.1733"; gene_name "CUFF.1119"; flanks "130941352-,130941183^"; structure "1^,2^"; splice_chain "130941352^,130941268^";
chr9	juncbase	alternative_acceptor	131483759	131483930	.	-	.	gene_id "alternative_acceptor.1180"; transcript_id "alternative_acceptor.1180"; gene_name "CUFF.1187"; flanks "131483759-,131483930^"; structure "1-,2-"; splice_chain "131483781-,131483759-";
chr9	juncbase	alternative_acceptor	131483809	131483930	.	-	.	gene_id "alternative_acceptor.1181"; transcript_id "alternative_acceptor.1181"; gene_name "CUFF.1187"; flanks "131483809-,131483930^"; structure "1-,2-"; splice_chain "131483809-,131483781-";
chr9	juncbase	alternative_acceptor	43885072	43890296	.	+	.	gene_id "alternative_acceptor.1182"; transcript_id "alternative_acceptor.1182"; gene_name "CUFF.1136"; flanks "43885072-,43890296^"; structure "1-,2-"; splice_chain "43887611-,43890296-";
chr9	juncbase	alternative_acceptor	15185404	15186942	.	-	.	gene_id "alternative_acceptor.1183"; transcript_id "alternative_acceptor.1183"; gene_name "CUFF.1119"; flanks "15185404-,15186942^"; structure "1-,2-"; splice_chain "15185526-,15185404-";
chr9	juncbase	alternative_acceptor	116791252	116794928	.	+	.	gene_id "alternative_acceptor.1184"; transcript_id "alternative_acceptor.1184"; gene_name "CUFF.1166"; flanks "116791252-,116794928^"; structure "1-,2-"; splice_chain "116794925-,116794928-";
chr9	juncbase	alternative_acceptor	130988452	130996300	.	+	.	gene_id "alternative_acceptor.1185"; transcript_id "alternative_acceptor.1185"; gene_name "CUFF.1185"; flanks "130988452-,130996300^"; structure "1-,2-"; splice_chain "130994265-,130996300-";
chr9	juncbase	jcn_only_AA	15226010	15267912	.	-	.	gene_id "jcn_only_AA.1561"; transcript_id "jcn_only_AA.1561"; gene_name "CUFF.1119"; flanks "15226010-,15267912^"; structure "1-,2-"; splice_chain "15250008-,15226010-";
chr9	juncbase	jcn_only_AA	15211395	15267912	.	-	.	gene_id "jcn_only_AA.1562"; transcript_id "jcn_only_AA.1562"; gene_name "CUFF.1119"; flanks "15211395-,15267912^"; structure "1-,2-"; splice_chain "15250008-,15211395-";
chr9	juncbase	intron_retention	130952998	130948008	.	-	.	gene_id "intron_retention.1295"; transcript_id "intron_retention.1295"; gene_name ""; flanks "130952998-,130948008^"; structure "0,1^2-"; splice_chain ",130952998^130948008-";
chr9	juncbase	cassette	116769719	116770757	.	+	.	gene_id "cassette.969"; transcript_id "cassette.969"; gene_name "CUFF.1166"; flanks "116769719-,116770757^"; structure "0,1-2^"; splice_chain ",116770624-116770659^";
chr9	juncbase	alternative_acceptor	15214247	15249916	.	-	.	gene_id "alternative_acceptor.1186"; transcript_id "alternative_acceptor.1186"; gene_name ""; flanks "15214247-,15249916^"; structure "1-,2-"; splice_chain "15249685-,15214247-";
chr9	juncbase	alternative_donor	131002275	131004511	.	+	.	gene_id "alternative_donor.1734"; transcript_id "alternative_donor.1734"; gene_name "CUFF.1185"; flanks "131002275-,131004511^"; structure "1^,2^"; splice_chain "131002275^,131003326^";
chr9	juncbase	jcn_only_AA	116779064	116791190	.	+	.	gene_id "jcn_only_AA.1563"; transcript_id "jcn_only_AA.1563"; gene_name "CUFF.1166"; flanks "116779064-,116791190^"; structure "1-,2-"; splice_chain "116791013-,116791190-";
chr9	juncbase	cassette	139744589	139745207	.	+	.	gene_id "cassette.970"; transcript_id "cassette.970"; gene_name "CUFF.1200"; flanks "139744589-,139745207^"; structure "0,1-2^"; splice_chain ",139744958-139745012^";
chr9	juncbase	intron_retention	139744589	139744955	.	+	.	gene_id "intron_retention.1296"; transcript_id "intron_retention.1296"; gene_name "CUFF.1200"; flanks "139744589-,139744955^"; structure "0,1^2-"; splice_chain ",139744589^139744955-";
chr9	juncbase	jcn_only_AD	130966465	130953141	.	-	.	gene_id "jcn_only_AD.2047"; transcript_id "jcn_only_AD.2047"; gene_name ""; flanks "130966465-,130953141^"; structure "1^,2^"; splice_chain "130966465^,130953711^";
chr9	juncbase	jcn_only_AD	130954011	130953141	.	-	.	gene_id "jcn_only_AD.2048"; transcript_id "jcn_only_AD.2048"; gene_name ""; flanks "130954011-,130953141^"; structure "1^,2^"; splice_chain "130954011^,130953711^";
chr9	juncbase	jcn_only_AD	130953559	130953141	.	-	.	gene_id "jcn_only_AD.2049"; transcript_id "jcn_only_AD.2049"; gene_name ""; flanks "130953559-,130953141^"; structure "1^,2^"; splice_chain "130953711^,130953559^";
chr9	juncbase	jcn_only_AD	130954134	130953141	.	-	.	gene_id "jcn_only_AD.2050"; transcript_id "jcn_only_AD.2050"; gene_name ""; flanks "130954134-,130953141^"; structure "1^,2^"; splice_chain "130954134^,130953711^";
chr9	juncbase	jcn_only_AA	125652824	125667389	.	-	.	gene_id "jcn_only_AA.1564"; transcript_id "jcn_only_AA.1564"; gene_name "CUFF.1178"; flanks "125652824-,125667389^"; structure "1-,2-"; splice_chain "125659855-,125652824-";
chr9	juncbase	intron_retention	123555638	123555535	.	-	.	gene_id "intron_retention.1297"; transcript_id "intron_retention.1297"; gene_name "CUFF.1170"; flanks "123555638-,123555535^"; structure "0,1^2-"; splice_chain ",123555638^123555535-";
chr9	juncbase	jcn_only_AD	125613379	125612101	.	-	.	gene_id "jcn_only_AD.2051"; transcript_id "jcn_only_AD.2051"; gene_name ""; flanks "125613379-,125612101^"; structure "1^,2^"; splice_chain "125613379^,125613360^";
chr9	juncbase	alternative_donor	34991413	34993197	.	+	.	gene_id "alternative_donor.1735"; transcript_id "alternative_donor.1735"; gene_name "CUFF.1129"; flanks "34991413-,34993197^"; structure "1^,2^"; splice_chain "34991413^,34992983^";
chr9	juncbase	alternative_donor	131008782	131009654	.	+	.	gene_id "alternative_donor.1736"; transcript_id "alternative_donor.1736"; gene_name "CUFF.1185"; flanks "131008782-,131009654^"; structure "1^,2^"; splice_chain "131008782^,131009402^";
chr9	juncbase	alternative_acceptor	131483759	131483930	.	-	.	gene_id "alternative_acceptor.1187"; transcript_id "alternative_acceptor.1187"; gene_name "CUFF.1187"; flanks "131483759-,131483930^"; structure "1-,2-"; splice_chain "131483809-,131483759-";
chr9	juncbase	alternative_acceptor	131483781	131483930	.	-	.	gene_id "alternative_acceptor.1188"; transcript_id "alternative_acceptor.1188"; gene_name "CUFF.1187"; flanks "131483781-,131483930^"; structure "1-,2-"; splice_chain "131483809-,131483781-";
chr9	juncbase	jcn_only_AA	116791252	116794928	.	+	.	gene_id "jcn_only_AA.1565"; transcript_id "jcn_only_AA.1565"; gene_name "CUFF.1166"; flanks "116791252-,116794928^"; structure "1-,2-"; splice_chain "116794925-,116794928-";
chr9	juncbase	alternative_acceptor	131008782	131009654	.	+	.	gene_id "alternative_acceptor.1189"; transcript_id "alternative_acceptor.1189"; gene_name "CUFF.1185"; flanks "131008782-,131009654^"; structure "1-,2-"; splice_chain "131009216-,131009654-";
chr9	juncbase	jcn_only_AA	43853616	43854069	.	+	.	gene_id "jcn_only_AA.1566"; transcript_id "jcn_only_AA.1566"; gene_name ""; flanks "43853616-,43854069^"; structure "1-,2-"; splice_chain "43854069-,43861003-";
chr9	juncbase	jcn_only_AA	43853616	43861006	.	+	.	gene_id "jcn_only_AA.1567"; transcript_id "jcn_only_AA.1567"; gene_name ""; flanks "43853616-,43861006^"; structure "1-,2-"; splice_chain "43861003-,43861006-";
chr9	juncbase	jcn_only_AA	43885072	43890296	.	+	.	gene_id "jcn_only_AA.1568"; transcript_id "jcn_only_AA.1568"; gene_name "CUFF.1136"; flanks "43885072-,43890296^"; structure "1-,2-"; splice_chain "43887611-,43890296-";
chr9	juncbase	jcn_only_AA	130985139	130988314	.	+	.	gene_id "jcn_only_AA.1569"; transcript_id "jcn_only_AA.1569"; gene_name "CUFF.1185"; flanks "130985139-,130988314^"; structure "1-,2-"; splice_chain "130986530-,130988314-";
chr9	juncbase	intron_retention	125616231	125613715	.	-	.	gene_id "intron_retention.1298"; transcript_id "intron_retention.1298"; gene_name "CUFF.1178"; flanks "125616231-,125613715^"; structure "0,1^2-"; splice_chain ",125616231^125613715-";
chr9	juncbase	alternative_donor	130941523	130941183	.	-	.	gene_id "alternative_donor.1737"; transcript_id "alternative_donor.1737"; gene_name "CUFF.1186"; flanks "130941523-,130941183^"; structure "1^,2^"; splice_chain "130941523^,130941352^";
chr9	juncbase	alternative_donor	130941268	130941183	.	-	.	gene_id "alternative_donor.1738"; transcript_id "alternative_donor.1738"; gene_name "CUFF.1186"; flanks "130941268-,130941183^"; structure "1^,2^"; splice_chain "130941352^,130941268^";
chr9	juncbase	jcn_only_AA	123550464	123555427	.	-	.	gene_id "jcn_only_AA.1570"; transcript_id "jcn_only_AA.1570"; gene_name "CUFF.1170"; flanks "123550464-,123555427^"; structure "1-,2-"; splice_chain "123550556-,123550464-";
chr9	juncbase	jcn_only_AD	135703400	135702441	.	-	.	gene_id "jcn_only_AD.2052"; transcript_id "jcn_only_AD.2052"; gene_name "CUFF.1178,CUFF.1192"; flanks "135703400-,135702441^"; structure "1^,2^"; splice_chain "135703400^,135702694^";
chr9	juncbase	cassette	34989828	34993197	.	+	.	gene_id "cassette.971"; transcript_id "cassette.971"; gene_name "CUFF.1129"; flanks "34989828-,34993197^"; structure "0,1-2^"; splice_chain ",34990345-34990608^";
chr9	juncbase	jcn_only_AA	43907537	43908436	.	+	.	gene_id "jcn_only_AA.1571"; transcript_id "jcn_only_AA.1571"; gene_name "CUFF.1136"; flanks "43907537-,43908436^"; structure "1-,2-"; splice_chain "43908112-,43908436-";
chr9	juncbase	alternative_donor	131486273	131484853	.	-	.	gene_id "alternative_donor.1739"; transcript_id "alternative_donor.1739"; gene_name "CUFF.1187"; flanks "131486273-,131484853^"; structure "1^,2^"; splice_chain "131486273^,131486231^";
chr9	juncbase	jcn_only_AD	35078602	35077396	.	-	.	gene_id "jcn_only_AD.2053"; transcript_id "jcn_only_AD.2053"; gene_name "CUFF.1130"; flanks "35078602-,35077396^"; structure "1^,2^"; splice_chain "35078602^,35078138^";
chr9	juncbase	intron_retention	131483704	131483547	.	-	.	gene_id "intron_retention.1299"; transcript_id "intron_retention.1299"; gene_name "CUFF.1187"; flanks "131483704-,131483547^"; structure "0,1^2-"; splice_chain ",131483704^131483547-";
chr9	juncbase	alternative_acceptor	43853616	43861003	.	+	.	gene_id "alternative_acceptor.1190"; transcript_id "alternative_acceptor.1190"; gene_name "CUFF.1136"; flanks "43853616-,43861003^"; structure "1-,2-"; splice_chain "43861003-,43861006-";
chr9	juncbase	alternative_acceptor	43853616	43854069	.	+	.	gene_id "alternative_acceptor.1191"; transcript_id "alternative_acceptor.1191"; gene_name "CUFF.1136"; flanks "43853616-,43854069^"; structure "1-,2-"; splice_chain "43854069-,43861006-";
chr9	juncbase	cassette	137772767	137775148	.	+	.	gene_id "cassette.972"; transcript_id "cassette.972"; gene_name "CUFF.1193"; flanks "137772767-,137775148^"; structure "0,1-2^"; splice_chain ",137774372-137774485^";
chr9	juncbase	cassette	104249231	104239451	.	-	.	gene_id "cassette.973"; transcript_id "cassette.973"; gene_name "CUFF.1159"; flanks "104249231-,104239451^"; structure "0,1-2^"; splice_chain ",104243007-104242953^";
chr9	juncbase	intron_retention	35079438	35079238	.	-	.	gene_id "intron_retention.1300"; transcript_id "intron_retention.1300"; gene_name "CUFF.1130"; flanks "35079438-,35079238^"; structure "0,1^2-"; splice_chain ",35079438^35079238-";
chr9	juncbase	intron_retention	130953004	130948014	.	-	.	gene_id "intron_retention.1301"; transcript_id "intron_retention.1301"; gene_name ""; flanks "130953004-,130948014^"; structure "0,1^2-"; splice_chain ",130953004^130948014-";
chr9	juncbase	alternative_acceptor	135742340	135750502	.	-	.	gene_id "alternative_acceptor.1192"; transcript_id "alternative_acceptor.1192"; gene_name "CUFF.1192"; flanks "135742340-,135750502^"; structure "1-,2-"; splice_chain "135749826-,135742340-";
chr9	juncbase	intron_retention	123555427	123550464	.	-	.	gene_id "intron_retention.1302"; transcript_id "intron_retention.1302"; gene_name ""; flanks "123555427-,123550464^"; structure "0,1^2-"; splice_chain ",123555427^123550464-";
chr9	juncbase	intron_retention	35076519	35074429	.	-	.	gene_id "intron_retention.1303"; transcript_id "intron_retention.1303"; gene_name ""; flanks "35076519-,35074429^"; structure "0,1^2-"; splice_chain ",35076519^35074429-";
chr9	juncbase	intron_retention	125047566	125048059	.	+	.	gene_id "intron_retention.1304"; transcript_id "intron_retention.1304"; gene_name "CUFF.1175"; flanks "125047566-,125048059^"; structure "0,1^2-"; splice_chain ",125047566^125048059-";
chr9	juncbase	intron_retention	130931355	130929443	.	-	.	gene_id "intron_retention.1305"; transcript_id "intron_retention.1305"; gene_name "CUFF.1186"; flanks "130931355-,130929443^"; structure "0,1^2-"; splice_chain ",130931355^130929443-";
chr9	juncbase	alternative_donor	139794972	139802522	.	+	.	gene_id "alternative_donor.1740"; transcript_id "alternative_donor.1740"; gene_name "CUFF.1198"; flanks "139794972-,139802522^"; structure "1^,2^"; splice_chain "139794972^,139795128^";
chr9	juncbase	alternative_donor	139796848	139802522	.	+	.	gene_id "alternative_donor.1741"; transcript_id "alternative_donor.1741"; gene_name "CUFF.1198"; flanks "139796848-,139802522^"; structure "1^,2^"; splice_chain "139795128^,139796848^";
chr9	juncbase	alternative_acceptor	130985139	130988314	.	+	.	gene_id "alternative_acceptor.1193"; transcript_id "alternative_acceptor.1193"; gene_name "CUFF.1185"; flanks "130985139-,130988314^"; structure "1-,2-"; splice_chain "130986530-,130988314-";
chr9	juncbase	jcn_only_AD	131486273	131484853	.	-	.	gene_id "jcn_only_AD.2054"; transcript_id "jcn_only_AD.2054"; gene_name "CUFF.1187"; flanks "131486273-,131484853^"; structure "1^,2^"; splice_chain "131486273^,131486231^";
chr9	juncbase	cassette	116770834	116778975	.	+	.	gene_id "cassette.974"; transcript_id "cassette.974"; gene_name "CUFF.1166"; flanks "116770834-,116778975^"; structure "0,1-2^"; splice_chain ",116778393-116778452^";
chr9	juncbase	alternative_donor	130994403	130996300	.	+	.	gene_id "alternative_donor.1742"; transcript_id "alternative_donor.1742"; gene_name "CUFF.1185"; flanks "130994403-,130996300^"; structure "1^,2^"; splice_chain "130988452^,130994403^";
chr9	juncbase	alternative_donor	130986668	130996300	.	+	.	gene_id "alternative_donor.1743"; transcript_id "alternative_donor.1743"; gene_name "CUFF.1185"; flanks "130986668-,130996300^"; structure "1^,2^"; splice_chain "130986668^,130988452^";
chr9	juncbase	cassette	35400440	35403164	.	+	.	gene_id "cassette.975"; transcript_id "cassette.975"; gene_name "CUFF.1131"; flanks "35400440-,35403164^"; structure "0,1-2^"; splice_chain ",35401948-35402004^";
chr9	juncbase	alternative_donor	104295735	104293841	.	-	.	gene_id "alternative_donor.1744"; transcript_id "alternative_donor.1744"; gene_name "CUFF.1159"; flanks "104295735-,104293841^"; structure "1^,2^"; splice_chain "104295735^,104294959^";
chr9	juncbase	jcn_only_AD	15267912	15211395	.	-	.	gene_id "jcn_only_AD.2055"; transcript_id "jcn_only_AD.2055"; gene_name "CUFF.1170"; flanks "15267912-,15211395^"; structure "1^,2^"; splice_chain "15267912^,15214137^";
chr9	juncbase	cassette	35259047	35295693	.	+	.	gene_id "cassette.976"; transcript_id "cassette.976"; gene_name "CUFF.1131"; flanks "35259047-,35295693^"; structure "0,1-2^"; splice_chain ",35291066-35291101^";
chr9	juncbase	alternative_acceptor	34993441	34996392	.	+	.	gene_id "alternative_acceptor.1194"; transcript_id "alternative_acceptor.1194"; gene_name ""; flanks "34993441-,34996392^"; structure "1-,2-"; splice_chain "34996262-,34996392-";
chr9	juncbase	jcn_only_AA	131483809	131483930	.	-	.	gene_id "jcn_only_AA.1572"; transcript_id "jcn_only_AA.1572"; gene_name "CUFF.1187"; flanks "131483809-,131483930^"; structure "1-,2-"; splice_chain "131483809-,131483759-";
chr9	juncbase	jcn_only_AA	131483781	131483930	.	-	.	gene_id "jcn_only_AA.1573"; transcript_id "jcn_only_AA.1573"; gene_name "CUFF.1187"; flanks "131483781-,131483930^"; structure "1-,2-"; splice_chain "131483781-,131483759-";
chr9	juncbase	alternative_donor	130929818	130929443	.	-	.	gene_id "alternative_donor.1745"; transcript_id "alternative_donor.1745"; gene_name "CUFF.1186"; flanks "130929818-,130929443^"; structure "1^,2^"; splice_chain "130931331^,130929818^";
chr9	juncbase	alternative_donor	130931355	130929443	.	-	.	gene_id "alternative_donor.1746"; transcript_id "alternative_donor.1746"; gene_name "CUFF.1186"; flanks "130931355-,130929443^"; structure "1^,2^"; splice_chain "130931355^,130931331^";
chr9	juncbase	alternative_donor	35162302	35228012	.	+	.	gene_id "alternative_donor.1747"; transcript_id "alternative_donor.1747"; gene_name "CUFF.1131"; flanks "35162302-,35228012^"; structure "1^,2^"; splice_chain "35162302^,35227930^";
chr9	juncbase	jcn_only_AD	43915897	43920249	.	+	.	gene_id "jcn_only_AD.2056"; transcript_id "jcn_only_AD.2056"; gene_name "CUFF.1136"; flanks "43915897-,43920249^"; structure "1^,2^"; splice_chain "43915897^,43915979^";
chr9	juncbase	alternative_acceptor	43853616	43854069	.	+	.	gene_id "alternative_acceptor.1195"; transcript_id "alternative_acceptor.1195"; gene_name ""; flanks "43853616-,43854069^"; structure "1-,2-"; splice_chain "43854069-,43861003-";
chr9	juncbase	alternative_acceptor	43853616	43861006	.	+	.	gene_id "alternative_acceptor.1196"; transcript_id "alternative_acceptor.1196"; gene_name ""; flanks "43853616-,43861006^"; structure "1-,2-"; splice_chain "43861003-,43861006-";
chr9	juncbase	jcn_only_AD	139795128	139802522	.	+	.	gene_id "jcn_only_AD.2057"; transcript_id "jcn_only_AD.2057"; gene_name "CUFF.1198"; flanks "139795128-,139802522^"; structure "1^,2^"; splice_chain "139794972^,139795128^";
chr9	juncbase	jcn_only_AD	139796848	139802522	.	+	.	gene_id "jcn_only_AD.2058"; transcript_id "jcn_only_AD.2058"; gene_name "CUFF.1198"; flanks "139796848-,139802522^"; structure "1^,2^"; splice_chain "139794972^,139796848^";
chr9	juncbase	alternative_donor	130929818	130929443	.	-	.	gene_id "alternative_donor.1748"; transcript_id "alternative_donor.1748"; gene_name "CUFF.1186"; flanks "130929818-,130929443^"; structure "1^,2^"; splice_chain "130931355^,130929818^";
chr9	juncbase	alternative_donor	130931331	130929443	.	-	.	gene_id "alternative_donor.1749"; transcript_id "alternative_donor.1749"; gene_name "CUFF.1186"; flanks "130931331-,130929443^"; structure "1^,2^"; splice_chain "130931355^,130931331^";
chr9	juncbase	intron_retention	46687799	46687683	.	-	.	gene_id "intron_retention.1306"; transcript_id "intron_retention.1306"; gene_name "CUFF.1140"; flanks "46687799-,46687683^"; structure "0,1^2-"; splice_chain ",46687799^46687683-";
chr9	juncbase	jcn_only_AD	104192091	104188920	.	-	.	gene_id "jcn_only_AD.2059"; transcript_id "jcn_only_AD.2059"; gene_name "CUFF.1119,CUFF.1158"; flanks "104192091-,104188920^"; structure "1^,2^"; splice_chain "104192091^,104189764^";
chr9	juncbase	intron_retention	35075276	35075079	.	-	.	gene_id "intron_retention.1307"; transcript_id "intron_retention.1307"; gene_name "CUFF.1130"; flanks "35075276-,35075079^"; structure "0,1^2-"; splice_chain ",35075276^35075079-";
chr9	juncbase	alternative_donor	43885072	43890296	.	+	.	gene_id "alternative_donor.1750"; transcript_id "alternative_donor.1750"; gene_name "CUFF.1136"; flanks "43885072-,43890296^"; structure "1^,2^"; splice_chain "43885072^,43887733^";
chr9	juncbase	jcn_only_AA	130931798	130932299	.	-	.	gene_id "jcn_only_AA.1574"; transcript_id "jcn_only_AA.1574"; gene_name "CUFF.1186"; flanks "130931798-,130932299^"; structure "1-,2-"; splice_chain "130931979-,130931798-";
chr9	juncbase	alternative_acceptor	130931798	130932299	.	-	.	gene_id "alternative_acceptor.1197"; transcript_id "alternative_acceptor.1197"; gene_name "CUFF.1186"; flanks "130931798-,130932299^"; structure "1-,2-"; splice_chain "130931979-,130931798-";
chr9	juncbase	cassette	125047566	125048318	.	+	.	gene_id "cassette.977"; transcript_id "cassette.977"; gene_name "CUFF.1175"; flanks "125047566-,125048318^"; structure "0,1-2^"; splice_chain ",125048059-125048225^";
chr9	juncbase	alternative_acceptor	131484853	131486273	.	-	.	gene_id "alternative_acceptor.1198"; transcript_id "alternative_acceptor.1198"; gene_name "CUFF.1187"; flanks "131484853-,131486273^"; structure "1-,2-"; splice_chain "131485018-,131484853-";
chr9	juncbase	cassette	130952608	130948055	.	-	.	gene_id "cassette.978"; transcript_id "cassette.978"; gene_name "CUFF.1186"; flanks "130952608-,130948055^"; structure "0,1-2^"; splice_chain ",130950213-130950142^";
chr9	juncbase	cassette	130952967	130948055	.	-	.	gene_id "cassette.979"; transcript_id "cassette.979"; gene_name "CUFF.1186"; flanks "130952967-,130948055^"; structure "0,1-2^"; splice_chain ",130950213-130950142^";
chr9	juncbase	intron_retention	133320382	133327611	.	+	.	gene_id "intron_retention.1308"; transcript_id "intron_retention.1308"; gene_name "CUFF.1188"; flanks "133320382-,133327611^"; structure "0,1^2-"; splice_chain ",133320382^133327611-";
chr9	juncbase	intron_retention	130953104	130952635	.	-	.	gene_id "intron_retention.1309"; transcript_id "intron_retention.1309"; gene_name ""; flanks "130953104-,130952635^"; structure "0,1^2-"; splice_chain ",130953104^130952635-";
chr9	juncbase	jcn_only_AA	125028059	125033232	.	+	.	gene_id "jcn_only_AA.1575"; transcript_id "jcn_only_AA.1575"; gene_name ""; flanks "125028059-,125033232^"; structure "1-,2-"; splice_chain "125033143-,125033232-";
chr9	juncbase	intron_retention	35079728	35079532	.	-	.	gene_id "intron_retention.1310"; transcript_id "intron_retention.1310"; gene_name "CUFF.1130"; flanks "35079728-,35079532^"; structure "0,1^2-"; splice_chain ",35079728^35079532-";
chr9	juncbase	jcn_only_AA	15250008	15267912	.	-	.	gene_id "jcn_only_AA.1576"; transcript_id "jcn_only_AA.1576"; gene_name "CUFF.1119"; flanks "15250008-,15267912^"; structure "1-,2-"; splice_chain "15250008-,15211395-";
chr9	juncbase	jcn_only_AA	15226010	15267912	.	-	.	gene_id "jcn_only_AA.1577"; transcript_id "jcn_only_AA.1577"; gene_name "CUFF.1119"; flanks "15226010-,15267912^"; structure "1-,2-"; splice_chain "15226010-,15211395-";
chr9	juncbase	intron_retention	125027824	125033143	.	+	.	gene_id "intron_retention.1311"; transcript_id "intron_retention.1311"; gene_name "CUFF.1175"; flanks "125027824-,125033143^"; structure "0,1^2-"; splice_chain ",125027824^125033143-";
chr9	juncbase	jcn_only_AA	131483759	131483930	.	-	.	gene_id "jcn_only_AA.1578"; transcript_id "jcn_only_AA.1578"; gene_name "CUFF.1187"; flanks "131483759-,131483930^"; structure "1-,2-"; splice_chain "131483809-,131483759-";
chr9	juncbase	jcn_only_AA	131483781	131483930	.	-	.	gene_id "jcn_only_AA.1579"; transcript_id "jcn_only_AA.1579"; gene_name "CUFF.1187"; flanks "131483781-,131483930^"; structure "1-,2-"; splice_chain "131483809-,131483781-";
chr9	juncbase	cassette	130952608	130943078	.	-	.	gene_id "cassette.980"; transcript_id "cassette.980"; gene_name "CUFF.1186"; flanks "130952608-,130943078^"; structure "0,1-2^"; splice_chain ",130948055-130947826^";
chr9	juncbase	jcn_only_AA	15185404	15186942	.	-	.	gene_id "jcn_only_AA.1580"; transcript_id "jcn_only_AA.1580"; gene_name "CUFF.1119"; flanks "15185404-,15186942^"; structure "1-,2-"; splice_chain "15185526-,15185404-";
chr9	juncbase	jcn_only_AD	133355187	133355772	.	+	.	gene_id "jcn_only_AD.2060"; transcript_id "jcn_only_AD.2060"; gene_name "CUFF.1188"; flanks "133355187-,133355772^"; structure "1^,2^"; splice_chain "133355187^,133355286^";
chr9	juncbase	intron_retention	123555632	123555535	.	-	.	gene_id "intron_retention.1312"; transcript_id "intron_retention.1312"; gene_name "CUFF.1170"; flanks "123555632-,123555535^"; structure "0,1^2-"; splice_chain ",123555632^123555535-";
chr9	juncbase	alternative_acceptor	116779064	116791190	.	+	.	gene_id "alternative_acceptor.1199"; transcript_id "alternative_acceptor.1199"; gene_name "CUFF.1166"; flanks "116779064-,116791190^"; structure "1-,2-"; splice_chain "116791013-,116791190-";
chr9	juncbase	jcn_only_AD	130941523	130941183	.	-	.	gene_id "jcn_only_AD.2061"; transcript_id "jcn_only_AD.2061"; gene_name "CUFF.1186"; flanks "130941523-,130941183^"; structure "1^,2^"; splice_chain "130941523^,130941352^";
chr9	juncbase	jcn_only_AD	130941268	130941183	.	-	.	gene_id "jcn_only_AD.2062"; transcript_id "jcn_only_AD.2062"; gene_name "CUFF.1186"; flanks "130941268-,130941183^"; structure "1^,2^"; splice_chain "130941352^,130941268^";
chr9	juncbase	cassette	138480578	138482637	.	+	.	gene_id "cassette.981"; transcript_id "cassette.981"; gene_name "CUFF.1194"; flanks "138480578-,138482637^"; structure "0,1-2^"; splice_chain ",138481257-138481330^";
chr9	juncbase	alternative_donor	139795128	139802522	.	+	.	gene_id "alternative_donor.1751"; transcript_id "alternative_donor.1751"; gene_name "CUFF.1198"; flanks "139795128-,139802522^"; structure "1^,2^"; splice_chain "139795128^,139796848^";
chr9	juncbase	alternative_donor	139794972	139802522	.	+	.	gene_id "alternative_donor.1752"; transcript_id "alternative_donor.1752"; gene_name "CUFF.1198"; flanks "139794972-,139802522^"; structure "1^,2^"; splice_chain "139794972^,139796848^";
chr9	juncbase	jcn_only_AD	130932299	130931798	.	-	.	gene_id "jcn_only_AD.2063"; transcript_id "jcn_only_AD.2063"; gene_name "CUFF.1186"; flanks "130932299-,130931798^"; structure "1^,2^"; splice_chain "130932299^,130931902^";
chr9	juncbase	intron_retention	131486273	131485018	.	-	.	gene_id "intron_retention.1313"; transcript_id "intron_retention.1313"; gene_name "CUFF.1187"; flanks "131486273-,131485018^"; structure "0,1^2-"; splice_chain ",131486273^131485018-";
chr9	juncbase	cassette	139815667	139818304	.	+	.	gene_id "cassette.982"; transcript_id "cassette.982"; gene_name "CUFF.1198"; flanks "139815667-,139818304^"; structure "0,1-2^"; splice_chain ",139816834-139816945^";
chr9	juncbase	cassette	116750860	116764276	.	+	.	gene_id "cassette.983"; transcript_id "cassette.983"; gene_name "CUFF.1166"; flanks "116750860-,116764276^"; structure "0,1-2^"; splice_chain ",116760539-116760634^";
chr9	juncbase	jcn_only_AD	116795008	116798580	.	+	.	gene_id "jcn_only_AD.2064"; transcript_id "jcn_only_AD.2064"; gene_name "CUFF.1166"; flanks "116795008-,116798580^"; structure "1^,2^"; splice_chain "116795008^,116797515^";
chr9	juncbase	intron_retention	139794972	139802522	.	+	.	gene_id "intron_retention.1314"; transcript_id "intron_retention.1314"; gene_name "CUFF.1198"; flanks "139794972-,139802522^"; structure "0,1^2-"; splice_chain ",139794972^139802522-";
chr9	juncbase	intron_retention	34992983	34993197	.	+	.	gene_id "intron_retention.1315"; transcript_id "intron_retention.1315"; gene_name ""; flanks "34992983-,34993197^"; structure "0,1^2-"; splice_chain ",34992983^34993197-";
chr9	juncbase	jcn_only_AD	131002275	131004511	.	+	.	gene_id "jcn_only_AD.2065"; transcript_id "jcn_only_AD.2065"; gene_name "CUFF.1185"; flanks "131002275-,131004511^"; structure "1^,2^"; splice_chain "131002275^,131003326^";
chr9	juncbase	intron_retention	125627903	125627820	.	-	.	gene_id "intron_retention.1316"; transcript_id "intron_retention.1316"; gene_name "CUFF.1178"; flanks "125627903-,125627820^"; structure "0,1^2-"; splice_chain ",125627903^125627820-";
chr9	juncbase	cassette	105774379	105780607	.	+	.	gene_id "cassette.984"; transcript_id "cassette.984"; gene_name "CUFF.1160"; flanks "105774379-,105780607^"; structure "0,1-2^"; splice_chain ",105779170-105779243^";
chr9	juncbase	intron_retention	130941268	130941183	.	-	.	gene_id "intron_retention.1317"; transcript_id "intron_retention.1317"; gene_name ""; flanks "130941268-,130941183^"; structure "0,1^2-"; splice_chain ",130941268^130941183-";
chr9	juncbase	jcn_only_AD	130941268	130941183	.	-	.	gene_id "jcn_only_AD.2066"; transcript_id "jcn_only_AD.2066"; gene_name "CUFF.1186"; flanks "130941268-,130941183^"; structure "1^,2^"; splice_chain "130941523^,130941268^";
chr9	juncbase	jcn_only_AD	130941352	130941183	.	-	.	gene_id "jcn_only_AD.2067"; transcript_id "jcn_only_AD.2067"; gene_name "CUFF.1186"; flanks "130941352-,130941183^"; structure "1^,2^"; splice_chain "130941523^,130941352^";
chr9	juncbase	jcn_only_AD	43907537	43908436	.	+	.	gene_id "jcn_only_AD.2068"; transcript_id "jcn_only_AD.2068"; gene_name "CUFF.1136"; flanks "43907537-,43908436^"; structure "1^,2^"; splice_chain "43907537^,43908210^";
chr9	juncbase	jcn_only_AA	135730312	135739052	.	-	.	gene_id "jcn_only_AA.1581"; transcript_id "jcn_only_AA.1581"; gene_name "CUFF.1192"; flanks "135730312-,135739052^"; structure "1-,2-"; splice_chain "135736984-,135730312-";
chr9	juncbase	jcn_only_AD	130954011	130953141	.	-	.	gene_id "jcn_only_AD.2069"; transcript_id "jcn_only_AD.2069"; gene_name ""; flanks "130954011-,130953141^"; structure "1^,2^"; splice_chain "130966465^,130954011^";
chr9	juncbase	jcn_only_AD	130953711	130953141	.	-	.	gene_id "jcn_only_AD.2070"; transcript_id "jcn_only_AD.2070"; gene_name ""; flanks "130953711-,130953141^"; structure "1^,2^"; splice_chain "130966465^,130953711^";
chr9	juncbase	jcn_only_AD	130953559	130953141	.	-	.	gene_id "jcn_only_AD.2071"; transcript_id "jcn_only_AD.2071"; gene_name ""; flanks "130953559-,130953141^"; structure "1^,2^"; splice_chain "130966465^,130953559^";
chr9	juncbase	jcn_only_AD	130954134	130953141	.	-	.	gene_id "jcn_only_AD.2072"; transcript_id "jcn_only_AD.2072"; gene_name ""; flanks "130954134-,130953141^"; structure "1^,2^"; splice_chain "130966465^,130954134^";
chr9	juncbase	intron_retention	43876145	43884945	.	+	.	gene_id "intron_retention.1318"; transcript_id "intron_retention.1318"; gene_name "CUFF.1136"; flanks "43876145-,43884945^"; structure "0,1^2-"; splice_chain ",43876145^43884945-";
chr9	juncbase	jcn_only_AD	123555638	123555535	.	-	.	gene_id "jcn_only_AD.2073"; transcript_id "jcn_only_AD.2073"; gene_name "CUFF.1170"; flanks "123555638-,123555535^"; structure "1^,2^"; splice_chain "123555638^,123555632^";
chr9	juncbase	jcn_only_AD	139795128	139802522	.	+	.	gene_id "jcn_only_AD.2074"; transcript_id "jcn_only_AD.2074"; gene_name "CUFF.1198"; flanks "139795128-,139802522^"; structure "1^,2^"; splice_chain "139795128^,139796848^";
chr9	juncbase	jcn_only_AD	139794972	139802522	.	+	.	gene_id "jcn_only_AD.2075"; transcript_id "jcn_only_AD.2075"; gene_name "CUFF.1198"; flanks "139794972-,139802522^"; structure "1^,2^"; splice_chain "139794972^,139796848^";
chr9	juncbase	intron_retention	130954134	130953141	.	-	.	gene_id "intron_retention.1319"; transcript_id "intron_retention.1319"; gene_name ""; flanks "130954134-,130953141^"; structure "0,1^2-"; splice_chain ",130954134^130953141-";
chr9	juncbase	cassette	125047566	125054028	.	+	.	gene_id "cassette.985"; transcript_id "cassette.985"; gene_name "CUFF.1175"; flanks "125047566-,125054028^"; structure "0,1-2^"; splice_chain ",125048318-125048445^";
chr9	juncbase	alternative_acceptor	125616860	125617463	.	-	.	gene_id "alternative_acceptor.1200"; transcript_id "alternative_acceptor.1200"; gene_name "CUFF.1178"; flanks "125616860-,125617463^"; structure "1-,2-"; splice_chain "125616894-,125616860-";
chr9	juncbase	jcn_only_AA	116795008	116798580	.	+	.	gene_id "jcn_only_AA.1582"; transcript_id "jcn_only_AA.1582"; gene_name "CUFF.1166"; flanks "116795008-,116798580^"; structure "1-,2-"; splice_chain "116797471-,116798580-";
chr9	juncbase	jcn_only_AD	125027217	125033232	.	+	.	gene_id "jcn_only_AD.2076"; transcript_id "jcn_only_AD.2076"; gene_name "CUFF.1175"; flanks "125027217-,125033232^"; structure "1^,2^"; splice_chain "125027217^,125028059^";
chr9	juncbase	cassette	34989828	34993197	.	+	.	gene_id "cassette.986"; transcript_id "cassette.986"; gene_name "CUFF.1129"; flanks "34989828-,34993197^"; structure "0,1-2^"; splice_chain ",34990665-34990809^";
chr9	juncbase	cassette	34989828	34993197	.	+	.	gene_id "cassette.987"; transcript_id "cassette.987"; gene_name "CUFF.1129"; flanks "34989828-,34993197^"; structure "0,1-2^"; splice_chain ",34990496-34990608^";
chr9	juncbase	alternative_donor	123555638	123555535	.	-	.	gene_id "alternative_donor.1753"; transcript_id "alternative_donor.1753"; gene_name "CUFF.1170"; flanks "123555638-,123555535^"; structure "1^,2^"; splice_chain "123555638^,123555632^";
chr9	juncbase	alternative_donor	116795008	116798580	.	+	.	gene_id "alternative_donor.1754"; transcript_id "alternative_donor.1754"; gene_name "CUFF.1166"; flanks "116795008-,116798580^"; structure "1^,2^"; splice_chain "116795008^,116797515^";
chr9	juncbase	cassette	15203821	15192693	.	-	.	gene_id "cassette.988"; transcript_id "cassette.988"; gene_name "CUFF.1119"; flanks "15203821-,15192693^"; structure "0,1-2^"; splice_chain ",15199923-15199859^";
chr9	juncbase	cassette	125054119	125084819	.	+	.	gene_id "cassette.989"; transcript_id "cassette.989"; gene_name "CUFF.1175"; flanks "125054119-,125084819^"; structure "0,1-2^"; splice_chain ",125075506-125075665^";
chr9	juncbase	alternative_acceptor	130943078	130947826	.	-	.	gene_id "alternative_acceptor.1201"; transcript_id "alternative_acceptor.1201"; gene_name "CUFF.1186"; flanks "130943078-,130947826^"; structure "1-,2-"; splice_chain "130943093-,130943078-";
chr9	juncbase	alternative_donor	130932299	130931798	.	-	.	gene_id "alternative_donor.1755"; transcript_id "alternative_donor.1755"; gene_name "CUFF.1186"; flanks "130932299-,130931798^"; structure "1^,2^"; splice_chain "130932299^,130931902^";
chr9	juncbase	cassette	125027217	125033143	.	+	.	gene_id "cassette.990"; transcript_id "cassette.990"; gene_name "CUFF.1175"; flanks "125027217-,125033143^"; structure "0,1-2^"; splice_chain ",125027741-125027824^";
chr9	juncbase	alternative_acceptor	43853616	43861003	.	+	.	gene_id "alternative_acceptor.1202"; transcript_id "alternative_acceptor.1202"; gene_name "CUFF.1136"; flanks "43853616-,43861003^"; structure "1-,2-"; splice_chain "43854069-,43861003-";
chr9	juncbase	alternative_acceptor	43853616	43861006	.	+	.	gene_id "alternative_acceptor.1203"; transcript_id "alternative_acceptor.1203"; gene_name "CUFF.1136"; flanks "43853616-,43861006^"; structure "1-,2-"; splice_chain "43854069-,43861006-";
chr9	juncbase	jcn_only_AD	139794972	139802522	.	+	.	gene_id "jcn_only_AD.2077"; transcript_id "jcn_only_AD.2077"; gene_name "CUFF.1198"; flanks "139794972-,139802522^"; structure "1^,2^"; splice_chain "139794972^,139795128^";
chr9	juncbase	jcn_only_AD	139796848	139802522	.	+	.	gene_id "jcn_only_AD.2078"; transcript_id "jcn_only_AD.2078"; gene_name "CUFF.1198"; flanks "139796848-,139802522^"; structure "1^,2^"; splice_chain "139795128^,139796848^";
chr9	juncbase	intron_retention	34991413	34993197	.	+	.	gene_id "intron_retention.1320"; transcript_id "intron_retention.1320"; gene_name "CUFF.1129"; flanks "34991413-,34993197^"; structure "0,1^2-"; splice_chain ",34991413^34993197-";
chr9	juncbase	alternative_acceptor	125028059	125033232	.	+	.	gene_id "alternative_acceptor.1204"; transcript_id "alternative_acceptor.1204"; gene_name ""; flanks "125028059-,125033232^"; structure "1-,2-"; splice_chain "125033143-,125033232-";
chr9	juncbase	intron_retention	139743232	139743563	.	+	.	gene_id "intron_retention.1321"; transcript_id "intron_retention.1321"; gene_name "CUFF.1200"; flanks "139743232-,139743563^"; structure "0,1^2-"; splice_chain ",139743232^139743563-";
chr8	juncbase	intron_retention	144356972	144358173	.	+	.	gene_id "intron_retention.1322"; transcript_id "intron_retention.1322"; gene_name ""; flanks "144356972-,144358173^"; structure "0,1^2-"; splice_chain ",144356972^144358173-";
chr8	juncbase	jcn_only_AD	80992550	80976828	.	-	.	gene_id "jcn_only_AD.2079"; transcript_id "jcn_only_AD.2079"; gene_name "CUFF.1082"; flanks "80992550-,80976828^"; structure "1^,2^"; splice_chain "81083256^,80992550^";
chr8	juncbase	jcn_only_AD	81032050	80976828	.	-	.	gene_id "jcn_only_AD.2080"; transcript_id "jcn_only_AD.2080"; gene_name "CUFF.1082"; flanks "81032050-,80976828^"; structure "1^,2^"; splice_chain "81083256^,81032050^";
chr8	juncbase	jcn_only_AD	81083660	80976828	.	-	.	gene_id "jcn_only_AD.2081"; transcript_id "jcn_only_AD.2081"; gene_name "CUFF.1082"; flanks "81083660-,80976828^"; structure "1^,2^"; splice_chain "81083660^,81083256^";
chr8	juncbase	jcn_only_AD	81070672	80976828	.	-	.	gene_id "jcn_only_AD.2082"; transcript_id "jcn_only_AD.2082"; gene_name "CUFF.1082"; flanks "81070672-,80976828^"; structure "1^,2^"; splice_chain "81083256^,81070672^";
chr8	juncbase	jcn_only_AD	81083442	80976828	.	-	.	gene_id "jcn_only_AD.2083"; transcript_id "jcn_only_AD.2083"; gene_name "CUFF.1082"; flanks "81083442-,80976828^"; structure "1^,2^"; splice_chain "81083442^,81083256^";
chr8	juncbase	jcn_only_AD	81130704	80976828	.	-	.	gene_id "jcn_only_AD.2084"; transcript_id "jcn_only_AD.2084"; gene_name "CUFF.1082"; flanks "81130704-,80976828^"; structure "1^,2^"; splice_chain "81130704^,81083256^";
chr8	juncbase	jcn_only_AD	75233823	75272372	.	+	.	gene_id "jcn_only_AD.2085"; transcript_id "jcn_only_AD.2085"; gene_name "CUFF.1078"; flanks "75233823-,75272372^"; structure "1^,2^"; splice_chain "75233823^,75263701^";
chr8	juncbase	jcn_only_AD	75233480	75272372	.	+	.	gene_id "jcn_only_AD.2086"; transcript_id "jcn_only_AD.2086"; gene_name "CUFF.1078"; flanks "75233480-,75272372^"; structure "1^,2^"; splice_chain "75233480^,75263701^";
chr8	juncbase	jcn_only_AD	75263556	75272372	.	+	.	gene_id "jcn_only_AD.2087"; transcript_id "jcn_only_AD.2087"; gene_name "CUFF.1078"; flanks "75263556-,75272372^"; structure "1^,2^"; splice_chain "75263556^,75263701^";
chr8	juncbase	jcn_only_AD	75262813	75272372	.	+	.	gene_id "jcn_only_AD.2088"; transcript_id "jcn_only_AD.2088"; gene_name "CUFF.1078"; flanks "75262813-,75272372^"; structure "1^,2^"; splice_chain "75262813^,75263701^";
chr8	juncbase	alternative_donor	75233823	75272372	.	+	.	gene_id "alternative_donor.1756"; transcript_id "alternative_donor.1756"; gene_name "CUFF.1078"; flanks "75233823-,75272372^"; structure "1^,2^"; splice_chain "75233480^,75233823^";
chr8	juncbase	alternative_donor	75263701	75272372	.	+	.	gene_id "alternative_donor.1757"; transcript_id "alternative_donor.1757"; gene_name "CUFF.1078"; flanks "75263701-,75272372^"; structure "1^,2^"; splice_chain "75233480^,75263701^";
chr8	juncbase	alternative_donor	75263556	75272372	.	+	.	gene_id "alternative_donor.1758"; transcript_id "alternative_donor.1758"; gene_name "CUFF.1078"; flanks "75263556-,75272372^"; structure "1^,2^"; splice_chain "75233480^,75263556^";
chr8	juncbase	alternative_donor	75262813	75272372	.	+	.	gene_id "alternative_donor.1759"; transcript_id "alternative_donor.1759"; gene_name "CUFF.1078"; flanks "75262813-,75272372^"; structure "1^,2^"; splice_chain "75233480^,75262813^";
chr8	juncbase	jcn_only_AA	98817692	98827556	.	+	.	gene_id "jcn_only_AA.1583"; transcript_id "jcn_only_AA.1583"; gene_name "CUFF.1060,CUFF.1089"; flanks "98817692-,98827556^"; structure "1-,2-"; splice_chain "98827532-,98827556-";
chr8	juncbase	intron_retention	81083660	80965665	.	-	.	gene_id "intron_retention.1323"; transcript_id "intron_retention.1323"; gene_name ""; flanks "81083660-,80965665^"; structure "0,1^2-"; splice_chain ",81083660^80965665-";
chr8	juncbase	alternative_donor	80962680	80956443	.	-	.	gene_id "alternative_donor.1760"; transcript_id "alternative_donor.1760"; gene_name "CUFF.1082"; flanks "80962680-,80956443^"; structure "1^,2^"; splice_chain "80962680^,80962581^";
chr8	juncbase	cassette	80965517	80963863	.	-	.	gene_id "cassette.991"; transcript_id "cassette.991"; gene_name "CUFF.1082"; flanks "80965517-,80963863^"; structure "0,1-2^"; splice_chain ",80964910-80964841^";
chr8	juncbase	intron_retention	81083660	80976828	.	-	.	gene_id "intron_retention.1324"; transcript_id "intron_retention.1324"; gene_name ""; flanks "81083660-,80976828^"; structure "0,1^2-"; splice_chain ",81083660^80976828-";
chr8	juncbase	cassette	81083660	80965665	.	-	.	gene_id "cassette.992"; transcript_id "cassette.992"; gene_name "CUFF.1082"; flanks "81083660-,80965665^"; structure "0,1-2^"; splice_chain ",80976828-80976713^";
chr8	juncbase	alternative_acceptor	56657680	56663523	.	-	.	gene_id "alternative_acceptor.1205"; transcript_id "alternative_acceptor.1205"; gene_name "CUFF.1071"; flanks "56657680-,56663523^"; structure "1-,2-"; splice_chain "56657680-,56652777-";
chr8	juncbase	alternative_acceptor	56637818	56663523	.	-	.	gene_id "alternative_acceptor.1206"; transcript_id "alternative_acceptor.1206"; gene_name "CUFF.1071"; flanks "56637818-,56663523^"; structure "1-,2-"; splice_chain "56652777-,56637818-";
chr8	juncbase	alternative_acceptor	56656179	56663523	.	-	.	gene_id "alternative_acceptor.1207"; transcript_id "alternative_acceptor.1207"; gene_name "CUFF.1071"; flanks "56656179-,56663523^"; structure "1-,2-"; splice_chain "56656179-,56652777-";
chr8	juncbase	intron_retention	38006159	38005845	.	-	.	gene_id "intron_retention.1325"; transcript_id "intron_retention.1325"; gene_name "CUFF.1065"; flanks "38006159-,38005845^"; structure "0,1^2-"; splice_chain ",38006159^38005845-";
chr8	juncbase	alternative_acceptor	71564987	71572380	.	+	.	gene_id "alternative_acceptor.1208"; transcript_id "alternative_acceptor.1208"; gene_name "CUFF.1074,CUFF.1102"; flanks "71564987-,71572380^"; structure "1-,2-"; splice_chain "71565930-,71572380-";
chr8	juncbase	jcn_only_AD	99057575	99055003	.	-	.	gene_id "jcn_only_AD.2089"; transcript_id "jcn_only_AD.2089"; gene_name ""; flanks "99057575-,99055003^"; structure "1^,2^"; splice_chain "99057575^,99057171^";
chr8	juncbase	jcn_only_AD	99057055	99055003	.	-	.	gene_id "jcn_only_AD.2090"; transcript_id "jcn_only_AD.2090"; gene_name ""; flanks "99057055-,99055003^"; structure "1^,2^"; splice_chain "99057171^,99057055^";
chr8	juncbase	alternative_donor	56657620	56652777	.	-	.	gene_id "alternative_donor.1761"; transcript_id "alternative_donor.1761"; gene_name ""; flanks "56657620-,56652777^"; structure "1^,2^"; splice_chain "56663523^,56657620^";
chr8	juncbase	alternative_donor	56656040	56652777	.	-	.	gene_id "alternative_donor.1762"; transcript_id "alternative_donor.1762"; gene_name ""; flanks "56656040-,56652777^"; structure "1^,2^"; splice_chain "56663523^,56656040^";
chr8	juncbase	alternative_donor	80992550	80976828	.	-	.	gene_id "alternative_donor.1763"; transcript_id "alternative_donor.1763"; gene_name "CUFF.1082"; flanks "80992550-,80976828^"; structure "1^,2^"; splice_chain "81083256^,80992550^";
chr8	juncbase	alternative_donor	81032050	80976828	.	-	.	gene_id "alternative_donor.1764"; transcript_id "alternative_donor.1764"; gene_name "CUFF.1082"; flanks "81032050-,80976828^"; structure "1^,2^"; splice_chain "81083256^,81032050^";
chr8	juncbase	alternative_donor	81083660	80976828	.	-	.	gene_id "alternative_donor.1765"; transcript_id "alternative_donor.1765"; gene_name "CUFF.1082"; flanks "81083660-,80976828^"; structure "1^,2^"; splice_chain "81083660^,81083256^";
chr8	juncbase	alternative_donor	81070672	80976828	.	-	.	gene_id "alternative_donor.1766"; transcript_id "alternative_donor.1766"; gene_name "CUFF.1082"; flanks "81070672-,80976828^"; structure "1^,2^"; splice_chain "81083256^,81070672^";
chr8	juncbase	alternative_donor	81083442	80976828	.	-	.	gene_id "alternative_donor.1767"; transcript_id "alternative_donor.1767"; gene_name "CUFF.1082"; flanks "81083442-,80976828^"; structure "1^,2^"; splice_chain "81083442^,81083256^";
chr8	juncbase	alternative_donor	81130704	80976828	.	-	.	gene_id "alternative_donor.1768"; transcript_id "alternative_donor.1768"; gene_name "CUFF.1082"; flanks "81130704-,80976828^"; structure "1^,2^"; splice_chain "81130704^,81083256^";
chr8	juncbase	alternative_acceptor	99054946	99057171	.	-	.	gene_id "alternative_acceptor.1209"; transcript_id "alternative_acceptor.1209"; gene_name "CUFF.1090"; flanks "99054946-,99057171^"; structure "1-,2-"; splice_chain "99054946-,99037966-";
chr8	juncbase	alternative_acceptor	99055003	99057171	.	-	.	gene_id "alternative_acceptor.1210"; transcript_id "alternative_acceptor.1210"; gene_name "CUFF.1090"; flanks "99055003-,99057171^"; structure "1-,2-"; splice_chain "99055003-,99037966-";
chr8	juncbase	alternative_donor	80992550	80976828	.	-	.	gene_id "alternative_donor.1769"; transcript_id "alternative_donor.1769"; gene_name "CUFF.1082"; flanks "80992550-,80976828^"; structure "1^,2^"; splice_chain "81130704^,80992550^";
chr8	juncbase	alternative_donor	81032050	80976828	.	-	.	gene_id "alternative_donor.1770"; transcript_id "alternative_donor.1770"; gene_name "CUFF.1082"; flanks "81032050-,80976828^"; structure "1^,2^"; splice_chain "81130704^,81032050^";
chr8	juncbase	alternative_donor	81083660	80976828	.	-	.	gene_id "alternative_donor.1771"; transcript_id "alternative_donor.1771"; gene_name "CUFF.1082"; flanks "81083660-,80976828^"; structure "1^,2^"; splice_chain "81130704^,81083660^";
chr8	juncbase	alternative_donor	81070672	80976828	.	-	.	gene_id "alternative_donor.1772"; transcript_id "alternative_donor.1772"; gene_name "CUFF.1082"; flanks "81070672-,80976828^"; structure "1^,2^"; splice_chain "81130704^,81070672^";
chr8	juncbase	alternative_donor	81083442	80976828	.	-	.	gene_id "alternative_donor.1773"; transcript_id "alternative_donor.1773"; gene_name "CUFF.1082"; flanks "81083442-,80976828^"; structure "1^,2^"; splice_chain "81130704^,81083442^";
chr8	juncbase	alternative_donor	81083256	80976828	.	-	.	gene_id "alternative_donor.1774"; transcript_id "alternative_donor.1774"; gene_name "CUFF.1082"; flanks "81083256-,80976828^"; structure "1^,2^"; splice_chain "81130704^,81083256^";
chr8	juncbase	intron_retention	22012905	22012144	.	-	.	gene_id "intron_retention.1326"; transcript_id "intron_retention.1326"; gene_name "CUFF.1056"; flanks "22012905-,22012144^"; structure "0,1^2-"; splice_chain ",22012905^22012144-";
chr8	juncbase	jcn_only_AA	56663716	56675194	.	-	.	gene_id "jcn_only_AA.1584"; transcript_id "jcn_only_AA.1584"; gene_name "CUFF.1071"; flanks "56663716-,56675194^"; structure "1-,2-"; splice_chain "56668970-,56663716-";
chr8	juncbase	jcn_only_AA	106456609	106573591	.	+	.	gene_id "jcn_only_AA.1585"; transcript_id "jcn_only_AA.1585"; gene_name "CUFF.1092"; flanks "106456609-,106573591^"; structure "1-,2-"; splice_chain "106463786-,106573591-";
chr8	juncbase	intron_retention	23179643	23177565	.	-	.	gene_id "intron_retention.1327"; transcript_id "intron_retention.1327"; gene_name "CUFF.1059"; flanks "23179643-,23177565^"; structure "0,1^2-"; splice_chain ",23179643^23177565-";
chr8	juncbase	alternative_acceptor	98817692	98827556	.	+	.	gene_id "alternative_acceptor.1211"; transcript_id "alternative_acceptor.1211"; gene_name "CUFF.1060,CUFF.1089"; flanks "98817692-,98827556^"; structure "1-,2-"; splice_chain "98827532-,98827556-";
chr8	juncbase	intron_retention	81083442	80976828	.	-	.	gene_id "intron_retention.1328"; transcript_id "intron_retention.1328"; gene_name ""; flanks "81083442-,80976828^"; structure "0,1^2-"; splice_chain ",81083442^80976828-";
chr8	juncbase	jcn_only_AA	22012976	22013850	.	-	.	gene_id "jcn_only_AA.1586"; transcript_id "jcn_only_AA.1586"; gene_name "CUFF.1056"; flanks "22012976-,22013850^"; structure "1-,2-"; splice_chain "22013022-,22012976-";
chr8	juncbase	jcn_only_AA	23225947	23282564	.	-	.	gene_id "jcn_only_AA.1587"; transcript_id "jcn_only_AA.1587"; gene_name "CUFF.1059"; flanks "23225947-,23282564^"; structure "1-,2-"; splice_chain "23261586-,23225947-";
chr8	juncbase	jcn_only_AA	56652777	56663523	.	-	.	gene_id "jcn_only_AA.1588"; transcript_id "jcn_only_AA.1588"; gene_name "CUFF.1071"; flanks "56652777-,56663523^"; structure "1-,2-"; splice_chain "56657680-,56652777-";
chr8	juncbase	jcn_only_AA	56637818	56663523	.	-	.	gene_id "jcn_only_AA.1589"; transcript_id "jcn_only_AA.1589"; gene_name "CUFF.1071"; flanks "56637818-,56663523^"; structure "1-,2-"; splice_chain "56657680-,56637818-";
chr8	juncbase	jcn_only_AA	56656179	56663523	.	-	.	gene_id "jcn_only_AA.1590"; transcript_id "jcn_only_AA.1590"; gene_name "CUFF.1071"; flanks "56656179-,56663523^"; structure "1-,2-"; splice_chain "56657680-,56656179-";
chr8	juncbase	jcn_only_AD	10683662	10584176	.	-	.	gene_id "jcn_only_AD.2091"; transcript_id "jcn_only_AD.2091"; gene_name "CUFF.1064"; flanks "10683662-,10584176^"; structure "1^,2^"; splice_chain "10683662^,10587706^";
chr8	juncbase	jcn_only_AD	99057943	99057627	.	-	.	gene_id "jcn_only_AD.2092"; transcript_id "jcn_only_AD.2092"; gene_name ""; flanks "99057943-,99057627^"; structure "1^,2^"; splice_chain "99057943^,99057736^";
chr8	juncbase	alternative_donor	80992550	80976828	.	-	.	gene_id "alternative_donor.1775"; transcript_id "alternative_donor.1775"; gene_name "CUFF.1082"; flanks "80992550-,80976828^"; structure "1^,2^"; splice_chain "81070672^,80992550^";
chr8	juncbase	alternative_donor	81032050	80976828	.	-	.	gene_id "alternative_donor.1776"; transcript_id "alternative_donor.1776"; gene_name "CUFF.1082"; flanks "81032050-,80976828^"; structure "1^,2^"; splice_chain "81070672^,81032050^";
chr8	juncbase	alternative_donor	81083660	80976828	.	-	.	gene_id "alternative_donor.1777"; transcript_id "alternative_donor.1777"; gene_name "CUFF.1082"; flanks "81083660-,80976828^"; structure "1^,2^"; splice_chain "81083660^,81070672^";
chr8	juncbase	alternative_donor	81083442	80976828	.	-	.	gene_id "alternative_donor.1778"; transcript_id "alternative_donor.1778"; gene_name "CUFF.1082"; flanks "81083442-,80976828^"; structure "1^,2^"; splice_chain "81083442^,81070672^";
chr8	juncbase	alternative_donor	81083256	80976828	.	-	.	gene_id "alternative_donor.1779"; transcript_id "alternative_donor.1779"; gene_name "CUFF.1082"; flanks "81083256-,80976828^"; structure "1^,2^"; splice_chain "81083256^,81070672^";
chr8	juncbase	alternative_donor	81130704	80976828	.	-	.	gene_id "alternative_donor.1780"; transcript_id "alternative_donor.1780"; gene_name "CUFF.1082"; flanks "81130704-,80976828^"; structure "1^,2^"; splice_chain "81130704^,81070672^";
chr8	juncbase	cassette	126963158	126948577	.	-	.	gene_id "cassette.993"; transcript_id "cassette.993"; gene_name "CUFF.1104"; flanks "126963158-,126948577^"; structure "0,1-2^"; splice_chain ",126958426-126958177^";
chr8	juncbase	jcn_only_AD	75233823	75272372	.	+	.	gene_id "jcn_only_AD.2093"; transcript_id "jcn_only_AD.2093"; gene_name "CUFF.1078"; flanks "75233823-,75272372^"; structure "1^,2^"; splice_chain "75233823^,75263556^";
chr8	juncbase	jcn_only_AD	75233480	75272372	.	+	.	gene_id "jcn_only_AD.2094"; transcript_id "jcn_only_AD.2094"; gene_name "CUFF.1078"; flanks "75233480-,75272372^"; structure "1^,2^"; splice_chain "75233480^,75263556^";
chr8	juncbase	jcn_only_AD	75263701	75272372	.	+	.	gene_id "jcn_only_AD.2095"; transcript_id "jcn_only_AD.2095"; gene_name "CUFF.1078"; flanks "75263701-,75272372^"; structure "1^,2^"; splice_chain "75263556^,75263701^";
chr8	juncbase	jcn_only_AD	75262813	75272372	.	+	.	gene_id "jcn_only_AD.2096"; transcript_id "jcn_only_AD.2096"; gene_name "CUFF.1078"; flanks "75262813-,75272372^"; structure "1^,2^"; splice_chain "75262813^,75263556^";
chr8	juncbase	jcn_only_AA	56657680	56663523	.	-	.	gene_id "jcn_only_AA.1591"; transcript_id "jcn_only_AA.1591"; gene_name "CUFF.1071"; flanks "56657680-,56663523^"; structure "1-,2-"; splice_chain "56657680-,56656179-";
chr8	juncbase	jcn_only_AA	56652777	56663523	.	-	.	gene_id "jcn_only_AA.1592"; transcript_id "jcn_only_AA.1592"; gene_name "CUFF.1071"; flanks "56652777-,56663523^"; structure "1-,2-"; splice_chain "56656179-,56652777-";
chr8	juncbase	jcn_only_AA	56637818	56663523	.	-	.	gene_id "jcn_only_AA.1593"; transcript_id "jcn_only_AA.1593"; gene_name "CUFF.1071"; flanks "56637818-,56663523^"; structure "1-,2-"; splice_chain "56656179-,56637818-";
chr8	juncbase	cassette	120809902	120807871	.	-	.	gene_id "cassette.994"; transcript_id "cassette.994"; gene_name "CUFF.1101"; flanks "120809902-,120807871^"; structure "0,1-2^"; splice_chain ",120809343-120809230^";
chr8	juncbase	cassette	56676495	56668970	.	-	.	gene_id "cassette.995"; transcript_id "cassette.995"; gene_name "CUFF.1071"; flanks "56676495-,56668970^"; structure "0,1-2^"; splice_chain ",56675587-56675194^";
chr8	juncbase	jcn_only_AD	120774655	120772978	.	-	.	gene_id "jcn_only_AD.2097"; transcript_id "jcn_only_AD.2097"; gene_name "CUFF.1101"; flanks "120774655-,120772978^"; structure "1^,2^"; splice_chain "120774655^,120773848^";
chr8	juncbase	jcn_only_AD	126963430	126958426	.	-	.	gene_id "jcn_only_AD.2098"; transcript_id "jcn_only_AD.2098"; gene_name "CUFF.1082,CUFF.1104"; flanks "126963430-,126958426^"; structure "1^,2^"; splice_chain "126963430^,126963158^";
chr8	juncbase	alternative_acceptor	23189521	23190914	.	-	.	gene_id "alternative_acceptor.1212"; transcript_id "alternative_acceptor.1212"; gene_name "CUFF.1059"; flanks "23189521-,23190914^"; structure "1-,2-"; splice_chain "23189521-,23186078-";
chr8	juncbase	alternative_acceptor	23186099	23190914	.	-	.	gene_id "alternative_acceptor.1213"; transcript_id "alternative_acceptor.1213"; gene_name "CUFF.1059"; flanks "23186099-,23190914^"; structure "1-,2-"; splice_chain "23186099-,23186078-";
chr8	juncbase	jcn_only_AA	144356972	144358173	.	+	.	gene_id "jcn_only_AA.1594"; transcript_id "jcn_only_AA.1594"; gene_name ""; flanks "144356972-,144358173^"; structure "1-,2-"; splice_chain "144357148-,144358173-";
chr8	juncbase	jcn_only_AA	144356972	144358067	.	+	.	gene_id "jcn_only_AA.1595"; transcript_id "jcn_only_AA.1595"; gene_name ""; flanks "144356972-,144358067^"; structure "1-,2-"; splice_chain "144357148-,144358067-";
chr8	juncbase	jcn_only_AA	144356972	144357365	.	+	.	gene_id "jcn_only_AA.1596"; transcript_id "jcn_only_AA.1596"; gene_name ""; flanks "144356972-,144357365^"; structure "1-,2-"; splice_chain "144357148-,144357365-";
chr8	juncbase	jcn_only_AD	22014509	22012976	.	-	.	gene_id "jcn_only_AD.2099"; transcript_id "jcn_only_AD.2099"; gene_name "CUFF.1104"; flanks "22014509-,22012976^"; structure "1^,2^"; splice_chain "22014509^,22013850^";
chr8	juncbase	intron_retention	56675194	56663716	.	-	.	gene_id "intron_retention.1329"; transcript_id "intron_retention.1329"; gene_name ""; flanks "56675194-,56663716^"; structure "0,1^2-"; splice_chain ",56675194^56663716-";
chr8	juncbase	cassette	38003481	38001904	.	-	.	gene_id "cassette.996"; transcript_id "cassette.996"; gene_name "CUFF.1065"; flanks "38003481-,38001904^"; structure "0,1-2^"; splice_chain ",38002833-38002740^";
chr8	juncbase	alternative_donor	144818108	144822029	.	+	.	gene_id "alternative_donor.1781"; transcript_id "alternative_donor.1781"; gene_name "CUFF.1116"; flanks "144818108-,144822029^"; structure "1^,2^"; splice_chain "144818108^,144821673^";
chr8	juncbase	cassette	106370865	106431372	.	+	.	gene_id "cassette.997"; transcript_id "cassette.997"; gene_name "CUFF.1092"; flanks "106370865-,106431372^"; structure "0,1-2^"; splice_chain ",106427103-106427234^";
chr8	juncbase	alternative_acceptor	2452791	2453716	.	-	.	gene_id "alternative_acceptor.1214"; transcript_id "alternative_acceptor.1214"; gene_name "CUFF.1047"; flanks "2452791-,2453716^"; structure "1-,2-"; splice_chain "2452794-,2452791-";
chr8	juncbase	jcn_only_AD	75233823	75272372	.	+	.	gene_id "jcn_only_AD.2100"; transcript_id "jcn_only_AD.2100"; gene_name "CUFF.1078"; flanks "75233823-,75272372^"; structure "1^,2^"; splice_chain "75233823^,75262813^";
chr8	juncbase	jcn_only_AD	75233480	75272372	.	+	.	gene_id "jcn_only_AD.2101"; transcript_id "jcn_only_AD.2101"; gene_name "CUFF.1078"; flanks "75233480-,75272372^"; structure "1^,2^"; splice_chain "75233480^,75262813^";
chr8	juncbase	jcn_only_AD	75263701	75272372	.	+	.	gene_id "jcn_only_AD.2102"; transcript_id "jcn_only_AD.2102"; gene_name "CUFF.1078"; flanks "75263701-,75272372^"; structure "1^,2^"; splice_chain "75262813^,75263701^";
chr8	juncbase	jcn_only_AD	75263556	75272372	.	+	.	gene_id "jcn_only_AD.2103"; transcript_id "jcn_only_AD.2103"; gene_name "CUFF.1078"; flanks "75263556-,75272372^"; structure "1^,2^"; splice_chain "75262813^,75263556^";
chr8	juncbase	alternative_acceptor	71543525	71558280	.	+	.	gene_id "alternative_acceptor.1215"; transcript_id "alternative_acceptor.1215"; gene_name ""; flanks "71543525-,71558280^"; structure "1-,2-"; splice_chain "71544670-,71558280-";
chr8	juncbase	cassette	120758945	120756633	.	-	.	gene_id "cassette.998"; transcript_id "cassette.998"; gene_name "CUFF.1101"; flanks "120758945-,120756633^"; structure "0,1-2^"; splice_chain ",120757276-120757121^";
chr8	juncbase	alternative_donor	82192909	82195601	.	+	.	gene_id "alternative_donor.1782"; transcript_id "alternative_donor.1782"; gene_name "CUFF.1083"; flanks "82192909-,82195601^"; structure "1^,2^"; splice_chain "82192909^,82193548^";
chr8	juncbase	alternative_acceptor	56657680	56663523	.	-	.	gene_id "alternative_acceptor.1216"; transcript_id "alternative_acceptor.1216"; gene_name "CUFF.1071"; flanks "56657680-,56663523^"; structure "1-,2-"; splice_chain "56657680-,56656179-";
chr8	juncbase	alternative_acceptor	56652777	56663523	.	-	.	gene_id "alternative_acceptor.1217"; transcript_id "alternative_acceptor.1217"; gene_name "CUFF.1071"; flanks "56652777-,56663523^"; structure "1-,2-"; splice_chain "56656179-,56652777-";
chr8	juncbase	alternative_acceptor	56637818	56663523	.	-	.	gene_id "alternative_acceptor.1218"; transcript_id "alternative_acceptor.1218"; gene_name "CUFF.1071"; flanks "56637818-,56663523^"; structure "1-,2-"; splice_chain "56656179-,56637818-";
chr8	juncbase	jcn_only_AD	56685786	56676539	.	-	.	gene_id "jcn_only_AD.2104"; transcript_id "jcn_only_AD.2104"; gene_name "CUFF.1071"; flanks "56685786-,56676539^"; structure "1^,2^"; splice_chain "56685828^,56685786^";
chr8	juncbase	jcn_only_AD	56685535	56676539	.	-	.	gene_id "jcn_only_AD.2105"; transcript_id "jcn_only_AD.2105"; gene_name "CUFF.1071"; flanks "56685535-,56676539^"; structure "1^,2^"; splice_chain "56685828^,56685535^";
chr8	juncbase	jcn_only_AA	143922641	143995379	.	+	.	gene_id "jcn_only_AA.1597"; transcript_id "jcn_only_AA.1597"; gene_name "CUFF.1111"; flanks "143922641-,143995379^"; structure "1-,2-"; splice_chain "143927811-,143995379-";
chr8	juncbase	alternative_donor	75233823	75272372	.	+	.	gene_id "alternative_donor.1783"; transcript_id "alternative_donor.1783"; gene_name "CUFF.1078"; flanks "75233823-,75272372^"; structure "1^,2^"; splice_chain "75233823^,75263701^";
chr8	juncbase	alternative_donor	75233480	75272372	.	+	.	gene_id "alternative_donor.1784"; transcript_id "alternative_donor.1784"; gene_name "CUFF.1078"; flanks "75233480-,75272372^"; structure "1^,2^"; splice_chain "75233480^,75263701^";
chr8	juncbase	alternative_donor	75263556	75272372	.	+	.	gene_id "alternative_donor.1785"; transcript_id "alternative_donor.1785"; gene_name "CUFF.1078"; flanks "75263556-,75272372^"; structure "1^,2^"; splice_chain "75263556^,75263701^";
chr8	juncbase	alternative_donor	75262813	75272372	.	+	.	gene_id "alternative_donor.1786"; transcript_id "alternative_donor.1786"; gene_name "CUFF.1078"; flanks "75262813-,75272372^"; structure "1^,2^"; splice_chain "75262813^,75263701^";
chr8	juncbase	jcn_only_AD	56663523	56656179	.	-	.	gene_id "jcn_only_AD.2106"; transcript_id "jcn_only_AD.2106"; gene_name ""; flanks "56663523-,56656179^"; structure "1^,2^"; splice_chain "56663523^,56657620^";
chr8	juncbase	jcn_only_AD	80962680	80956443	.	-	.	gene_id "jcn_only_AD.2107"; transcript_id "jcn_only_AD.2107"; gene_name "CUFF.1082"; flanks "80962680-,80956443^"; structure "1^,2^"; splice_chain "80962680^,80962581^";
chr8	juncbase	intron_retention	99057055	99055003	.	-	.	gene_id "intron_retention.1330"; transcript_id "intron_retention.1330"; gene_name ""; flanks "99057055-,99055003^"; structure "0,1^2-"; splice_chain ",99057055^99055003-";
chr8	juncbase	cassette	107726213	107751686	.	+	.	gene_id "cassette.999"; transcript_id "cassette.999"; gene_name "CUFF.1094"; flanks "107726213-,107751686^"; structure "0,1-2^"; splice_chain ",107749748-107749828^";
chr8	juncbase	cassette	107738537	107751686	.	+	.	gene_id "cassette.1000"; transcript_id "cassette.1000"; gene_name "CUFF.1094"; flanks "107738537-,107751686^"; structure "0,1-2^"; splice_chain ",107749748-107749828^";
chr8	juncbase	jcn_only_AA	56663716	56668803	.	-	.	gene_id "jcn_only_AA.1598"; transcript_id "jcn_only_AA.1598"; gene_name ""; flanks "56663716-,56668803^"; structure "1-,2-"; splice_chain "56664105-,56663716-";
chr8	juncbase	jcn_only_AD	74891406	74893390	.	+	.	gene_id "jcn_only_AD.2108"; transcript_id "jcn_only_AD.2108"; gene_name "CUFF.1077"; flanks "74891406-,74893390^"; structure "1^,2^"; splice_chain "74891096^,74891406^";
chr8	juncbase	jcn_only_AD	74891110	74893390	.	+	.	gene_id "jcn_only_AD.2109"; transcript_id "jcn_only_AD.2109"; gene_name "CUFF.1077"; flanks "74891110-,74893390^"; structure "1^,2^"; splice_chain "74891096^,74891110^";
chr8	juncbase	alternative_donor	30667506	30657271	.	-	.	gene_id "alternative_donor.1787"; transcript_id "alternative_donor.1787"; gene_name "CUFF.1064"; flanks "30667506-,30657271^"; structure "1^,2^"; splice_chain "30669836^,30667506^";
chr8	juncbase	alternative_donor	30671403	30657271	.	-	.	gene_id "alternative_donor.1788"; transcript_id "alternative_donor.1788"; gene_name "CUFF.1064"; flanks "30671403-,30657271^"; structure "1^,2^"; splice_chain "30671403^,30669836^";
chr8	juncbase	alternative_donor	106456609	106573591	.	+	.	gene_id "alternative_donor.1789"; transcript_id "alternative_donor.1789"; gene_name "CUFF.1092"; flanks "106456609-,106573591^"; structure "1^,2^"; splice_chain "106456609^,106541197^";
chr8	juncbase	intron_retention	118541048	118542962	.	+	.	gene_id "intron_retention.1331"; transcript_id "intron_retention.1331"; gene_name ""; flanks "118541048-,118542962^"; structure "0,1^2-"; splice_chain ",118541048^118542962-";
chr8	juncbase	alternative_acceptor	106456609	106573591	.	+	.	gene_id "alternative_acceptor.1219"; transcript_id "alternative_acceptor.1219"; gene_name "CUFF.1092"; flanks "106456609-,106573591^"; structure "1-,2-"; splice_chain "106463786-,106573591-";
chr8	juncbase	intron_retention	22012073	22011726	.	-	.	gene_id "intron_retention.1332"; transcript_id "intron_retention.1332"; gene_name "CUFF.1056"; flanks "22012073-,22011726^"; structure "0,1^2-"; splice_chain ",22012073^22011726-";
chr8	juncbase	jcn_only_AD	143915705	143921832	.	+	.	gene_id "jcn_only_AD.2110"; transcript_id "jcn_only_AD.2110"; gene_name "CUFF.1111"; flanks "143915705-,143921832^"; structure "1^,2^"; splice_chain "143915705^,143916284^";
chr8	juncbase	alternative_donor	80992550	80976828	.	-	.	gene_id "alternative_donor.1790"; transcript_id "alternative_donor.1790"; gene_name "CUFF.1082"; flanks "80992550-,80976828^"; structure "1^,2^"; splice_chain "81083660^,80992550^";
chr8	juncbase	alternative_donor	81032050	80976828	.	-	.	gene_id "alternative_donor.1791"; transcript_id "alternative_donor.1791"; gene_name "CUFF.1082"; flanks "81032050-,80976828^"; structure "1^,2^"; splice_chain "81083660^,81032050^";
chr8	juncbase	alternative_donor	81070672	80976828	.	-	.	gene_id "alternative_donor.1792"; transcript_id "alternative_donor.1792"; gene_name "CUFF.1082"; flanks "81070672-,80976828^"; structure "1^,2^"; splice_chain "81083660^,81070672^";
chr8	juncbase	alternative_donor	81083442	80976828	.	-	.	gene_id "alternative_donor.1793"; transcript_id "alternative_donor.1793"; gene_name "CUFF.1082"; flanks "81083442-,80976828^"; structure "1^,2^"; splice_chain "81083660^,81083442^";
chr8	juncbase	alternative_donor	81083256	80976828	.	-	.	gene_id "alternative_donor.1794"; transcript_id "alternative_donor.1794"; gene_name "CUFF.1082"; flanks "81083256-,80976828^"; structure "1^,2^"; splice_chain "81083660^,81083256^";
chr8	juncbase	alternative_donor	81130704	80976828	.	-	.	gene_id "alternative_donor.1795"; transcript_id "alternative_donor.1795"; gene_name "CUFF.1082"; flanks "81130704-,80976828^"; structure "1^,2^"; splice_chain "81130704^,81083660^";
chr8	juncbase	intron_retention	56685828	56668970	.	-	.	gene_id "intron_retention.1333"; transcript_id "intron_retention.1333"; gene_name ""; flanks "56685828-,56668970^"; structure "0,1^2-"; splice_chain ",56685828^56668970-";
chr8	juncbase	jcn_only_AD	56663523	56652777	.	-	.	gene_id "jcn_only_AD.2111"; transcript_id "jcn_only_AD.2111"; gene_name ""; flanks "56663523-,56652777^"; structure "1^,2^"; splice_chain "56663523^,56656040^";
chr8	juncbase	jcn_only_AD	56657620	56652777	.	-	.	gene_id "jcn_only_AD.2112"; transcript_id "jcn_only_AD.2112"; gene_name ""; flanks "56657620-,56652777^"; structure "1^,2^"; splice_chain "56657620^,56656040^";
chr8	juncbase	alternative_donor	74884856	74888065	.	+	.	gene_id "alternative_donor.1796"; transcript_id "alternative_donor.1796"; gene_name "CUFF.1077"; flanks "74884856-,74888065^"; structure "1^,2^"; splice_chain "74884856^,74885228^";
chr8	juncbase	alternative_donor	107691520	107695427	.	+	.	gene_id "alternative_donor.1797"; transcript_id "alternative_donor.1797"; gene_name "CUFF.1094"; flanks "107691520-,107695427^"; structure "1^,2^"; splice_chain "107691520^,107694773^";
chr8	juncbase	alternative_donor	120774655	120772978	.	-	.	gene_id "alternative_donor.1798"; transcript_id "alternative_donor.1798"; gene_name "CUFF.1101"; flanks "120774655-,120772978^"; structure "1^,2^"; splice_chain "120774655^,120773848^";
chr8	juncbase	alternative_acceptor	74888196	74890991	.	+	.	gene_id "alternative_acceptor.1220"; transcript_id "alternative_acceptor.1220"; gene_name "CUFF.1077"; flanks "74888196-,74890991^"; structure "1-,2-"; splice_chain "74888540-,74890991-";
chr8	juncbase	jcn_only_AD	106646585	106800946	.	+	.	gene_id "jcn_only_AD.2113"; transcript_id "jcn_only_AD.2113"; gene_name "CUFF.1092"; flanks "106646585-,106800946^"; structure "1^,2^"; splice_chain "106646585^,106703163^";
chr8	juncbase	alternative_donor	126963430	126958426	.	-	.	gene_id "alternative_donor.1799"; transcript_id "alternative_donor.1799"; gene_name "CUFF.1082,CUFF.1104"; flanks "126963430-,126958426^"; structure "1^,2^"; splice_chain "126963430^,126963158^";
chr8	juncbase	intron_retention	99057575	99057316	.	-	.	gene_id "intron_retention.1334"; transcript_id "intron_retention.1334"; gene_name "CUFF.1090"; flanks "99057575-,99057316^"; structure "0,1^2-"; splice_chain ",99057575^99057316-";
chr8	juncbase	alternative_donor	56663523	56656179	.	-	.	gene_id "alternative_donor.1800"; transcript_id "alternative_donor.1800"; gene_name ""; flanks "56663523-,56656179^"; structure "1^,2^"; splice_chain "56663523^,56657620^";
chr8	juncbase	alternative_acceptor	99055003	99057575	.	-	.	gene_id "alternative_acceptor.1221"; transcript_id "alternative_acceptor.1221"; gene_name "CUFF.1090"; flanks "99055003-,99057575^"; structure "1-,2-"; splice_chain "99057316-,99055003-";
chr8	juncbase	jcn_only_AD	17434265	17434645	.	+	.	gene_id "jcn_only_AD.2114"; transcript_id "jcn_only_AD.2114"; gene_name "CUFF.1054"; flanks "17434265-,17434645^"; structure "1^,2^"; splice_chain "17434265^,17434269^";
chr8	juncbase	cassette	92086139	92090584	.	+	.	gene_id "cassette.1001"; transcript_id "cassette.1001"; gene_name "CUFF.1085"; flanks "92086139-,92090584^"; structure "0,1-2^"; splice_chain ",92088820-92088959^";
chr8	juncbase	alternative_acceptor	23189521	23190914	.	-	.	gene_id "alternative_acceptor.1222"; transcript_id "alternative_acceptor.1222"; gene_name "CUFF.1059"; flanks "23189521-,23190914^"; structure "1-,2-"; splice_chain "23189521-,23186099-";
chr8	juncbase	alternative_acceptor	23186078	23190914	.	-	.	gene_id "alternative_acceptor.1223"; transcript_id "alternative_acceptor.1223"; gene_name "CUFF.1059"; flanks "23186078-,23190914^"; structure "1-,2-"; splice_chain "23186099-,23186078-";
chr8	juncbase	jcn_only_AA	71564987	71572380	.	+	.	gene_id "jcn_only_AA.1599"; transcript_id "jcn_only_AA.1599"; gene_name "CUFF.1074,CUFF.1102"; flanks "71564987-,71572380^"; structure "1-,2-"; splice_chain "71565930-,71572380-";
chr8	juncbase	jcn_only_AA	99054946	99057171	.	-	.	gene_id "jcn_only_AA.1600"; transcript_id "jcn_only_AA.1600"; gene_name "CUFF.1090"; flanks "99054946-,99057171^"; structure "1-,2-"; splice_chain "99055003-,99054946-";
chr8	juncbase	jcn_only_AA	99037966	99057171	.	-	.	gene_id "jcn_only_AA.1601"; transcript_id "jcn_only_AA.1601"; gene_name "CUFF.1090"; flanks "99037966-,99057171^"; structure "1-,2-"; splice_chain "99055003-,99037966-";
chr8	juncbase	jcn_only_AA	144356972	144358067	.	+	.	gene_id "jcn_only_AA.1602"; transcript_id "jcn_only_AA.1602"; gene_name ""; flanks "144356972-,144358067^"; structure "1-,2-"; splice_chain "144358067-,144358173-";
chr8	juncbase	jcn_only_AA	144356972	144357148	.	+	.	gene_id "jcn_only_AA.1603"; transcript_id "jcn_only_AA.1603"; gene_name ""; flanks "144356972-,144357148^"; structure "1-,2-"; splice_chain "144357148-,144358173-";
chr8	juncbase	jcn_only_AA	144356972	144357365	.	+	.	gene_id "jcn_only_AA.1604"; transcript_id "jcn_only_AA.1604"; gene_name ""; flanks "144356972-,144357365^"; structure "1-,2-"; splice_chain "144357365-,144358173-";
chr8	juncbase	jcn_only_AD	81032050	80976828	.	-	.	gene_id "jcn_only_AD.2115"; transcript_id "jcn_only_AD.2115"; gene_name ""; flanks "81032050-,80976828^"; structure "1^,2^"; splice_chain "81032050^,80992550^";
chr8	juncbase	jcn_only_AD	81083660	80976828	.	-	.	gene_id "jcn_only_AD.2116"; transcript_id "jcn_only_AD.2116"; gene_name ""; flanks "81083660-,80976828^"; structure "1^,2^"; splice_chain "81083660^,80992550^";
chr8	juncbase	jcn_only_AD	81070672	80976828	.	-	.	gene_id "jcn_only_AD.2117"; transcript_id "jcn_only_AD.2117"; gene_name ""; flanks "81070672-,80976828^"; structure "1^,2^"; splice_chain "81070672^,80992550^";
chr8	juncbase	jcn_only_AD	81083442	80976828	.	-	.	gene_id "jcn_only_AD.2118"; transcript_id "jcn_only_AD.2118"; gene_name ""; flanks "81083442-,80976828^"; structure "1^,2^"; splice_chain "81083442^,80992550^";
chr8	juncbase	jcn_only_AD	81083256	80976828	.	-	.	gene_id "jcn_only_AD.2119"; transcript_id "jcn_only_AD.2119"; gene_name ""; flanks "81083256-,80976828^"; structure "1^,2^"; splice_chain "81083256^,80992550^";
chr8	juncbase	jcn_only_AD	81130704	80976828	.	-	.	gene_id "jcn_only_AD.2120"; transcript_id "jcn_only_AD.2120"; gene_name ""; flanks "81130704-,80976828^"; structure "1^,2^"; splice_chain "81130704^,80992550^";
chr8	juncbase	jcn_only_AD	56685828	56676539	.	-	.	gene_id "jcn_only_AD.2121"; transcript_id "jcn_only_AD.2121"; gene_name ""; flanks "56685828-,56676539^"; structure "1^,2^"; splice_chain "56685828^,56685786^";
chr8	juncbase	jcn_only_AD	56685535	56676539	.	-	.	gene_id "jcn_only_AD.2122"; transcript_id "jcn_only_AD.2122"; gene_name ""; flanks "56685535-,56676539^"; structure "1^,2^"; splice_chain "56685786^,56685535^";
chr8	juncbase	jcn_only_AA	23186099	23190914	.	-	.	gene_id "jcn_only_AA.1605"; transcript_id "jcn_only_AA.1605"; gene_name "CUFF.1059"; flanks "23186099-,23190914^"; structure "1-,2-"; splice_chain "23189521-,23186099-";
chr8	juncbase	jcn_only_AA	23186078	23190914	.	-	.	gene_id "jcn_only_AA.1606"; transcript_id "jcn_only_AA.1606"; gene_name "CUFF.1059"; flanks "23186078-,23190914^"; structure "1-,2-"; splice_chain "23189521-,23186078-";
chr8	juncbase	intron_retention	30657233	30643505	.	-	.	gene_id "intron_retention.1335"; transcript_id "intron_retention.1335"; gene_name ""; flanks "30657233-,30643505^"; structure "0,1^2-"; splice_chain ",30657233^30643505-";
chr8	juncbase	alternative_acceptor	144822118	144826030	.	+	.	gene_id "alternative_acceptor.1224"; transcript_id "alternative_acceptor.1224"; gene_name "CUFF.1074,CUFF.1116"; flanks "144822118-,144826030^"; structure "1-,2-"; splice_chain "144823922-,144826030-";
chr8	juncbase	intron_retention	38006159	38005877	.	-	.	gene_id "intron_retention.1336"; transcript_id "intron_retention.1336"; gene_name "CUFF.1065"; flanks "38006159-,38005877^"; structure "0,1^2-"; splice_chain ",38006159^38005877-";
chr8	juncbase	jcn_only_AA	71564129	71564770	.	+	.	gene_id "jcn_only_AA.1607"; transcript_id "jcn_only_AA.1607"; gene_name "CUFF.1074"; flanks "71564129-,71564770^"; structure "1-,2-"; splice_chain "71564746-,71564770-";
chr8	juncbase	jcn_only_AD	30671403	30657271	.	-	.	gene_id "jcn_only_AD.2123"; transcript_id "jcn_only_AD.2123"; gene_name "CUFF.1064"; flanks "30671403-,30657271^"; structure "1^,2^"; splice_chain "30671403^,30667506^";
chr8	juncbase	jcn_only_AD	30669836	30657271	.	-	.	gene_id "jcn_only_AD.2124"; transcript_id "jcn_only_AD.2124"; gene_name "CUFF.1064"; flanks "30669836-,30657271^"; structure "1^,2^"; splice_chain "30669836^,30667506^";
chr8	juncbase	jcn_only_AA	29535520	29583672	.	-	.	gene_id "jcn_only_AA.1608"; transcript_id "jcn_only_AA.1608"; gene_name "CUFF.1061"; flanks "29535520-,29583672^"; structure "1-,2-"; splice_chain "29582535-,29535520-";
chr8	juncbase	cassette	23198505	23186078	.	-	.	gene_id "cassette.1002"; transcript_id "cassette.1002"; gene_name "CUFF.1059"; flanks "23198505-,23186078^"; structure "0,1-2^"; splice_chain ",23191136-23190914^";
chr8	juncbase	intron_retention	75262707	75263533	.	+	.	gene_id "intron_retention.1337"; transcript_id "intron_retention.1337"; gene_name ""; flanks "75262707-,75263533^"; structure "0,1^2-"; splice_chain ",75262707^75263533-";
chr8	juncbase	alternative_donor	81032050	80976828	.	-	.	gene_id "alternative_donor.1801"; transcript_id "alternative_donor.1801"; gene_name ""; flanks "81032050-,80976828^"; structure "1^,2^"; splice_chain "81032050^,80992550^";
chr8	juncbase	alternative_donor	81083660	80976828	.	-	.	gene_id "alternative_donor.1802"; transcript_id "alternative_donor.1802"; gene_name ""; flanks "81083660-,80976828^"; structure "1^,2^"; splice_chain "81083660^,80992550^";
chr8	juncbase	alternative_donor	81070672	80976828	.	-	.	gene_id "alternative_donor.1803"; transcript_id "alternative_donor.1803"; gene_name ""; flanks "81070672-,80976828^"; structure "1^,2^"; splice_chain "81070672^,80992550^";
chr8	juncbase	alternative_donor	81083442	80976828	.	-	.	gene_id "alternative_donor.1804"; transcript_id "alternative_donor.1804"; gene_name ""; flanks "81083442-,80976828^"; structure "1^,2^"; splice_chain "81083442^,80992550^";
chr8	juncbase	alternative_donor	81083256	80976828	.	-	.	gene_id "alternative_donor.1805"; transcript_id "alternative_donor.1805"; gene_name ""; flanks "81083256-,80976828^"; structure "1^,2^"; splice_chain "81083256^,80992550^";
chr8	juncbase	alternative_donor	81130704	80976828	.	-	.	gene_id "alternative_donor.1806"; transcript_id "alternative_donor.1806"; gene_name ""; flanks "81130704-,80976828^"; structure "1^,2^"; splice_chain "81130704^,80992550^";
chr8	juncbase	jcn_only_AA	56657680	56663523	.	-	.	gene_id "jcn_only_AA.1609"; transcript_id "jcn_only_AA.1609"; gene_name "CUFF.1071"; flanks "56657680-,56663523^"; structure "1-,2-"; splice_chain "56657680-,56652777-";
chr8	juncbase	jcn_only_AA	56637818	56663523	.	-	.	gene_id "jcn_only_AA.1610"; transcript_id "jcn_only_AA.1610"; gene_name "CUFF.1071"; flanks "56637818-,56663523^"; structure "1-,2-"; splice_chain "56652777-,56637818-";
chr8	juncbase	jcn_only_AA	56656179	56663523	.	-	.	gene_id "jcn_only_AA.1611"; transcript_id "jcn_only_AA.1611"; gene_name "CUFF.1071"; flanks "56656179-,56663523^"; structure "1-,2-"; splice_chain "56656179-,56652777-";
chr8	juncbase	alternative_acceptor	99055003	99057171	.	-	.	gene_id "alternative_acceptor.1225"; transcript_id "alternative_acceptor.1225"; gene_name "CUFF.1090"; flanks "99055003-,99057171^"; structure "1-,2-"; splice_chain "99055003-,99054946-";
chr8	juncbase	alternative_acceptor	99037966	99057171	.	-	.	gene_id "alternative_acceptor.1226"; transcript_id "alternative_acceptor.1226"; gene_name "CUFF.1090"; flanks "99037966-,99057171^"; structure "1-,2-"; splice_chain "99054946-,99037966-";
chr8	juncbase	intron_retention	99057171	99054946	.	-	.	gene_id "intron_retention.1338"; transcript_id "intron_retention.1338"; gene_name ""; flanks "99057171-,99054946^"; structure "0,1^2-"; splice_chain ",99057171^99054946-";
chr8	juncbase	alternative_acceptor	71564129	71564770	.	+	.	gene_id "alternative_acceptor.1227"; transcript_id "alternative_acceptor.1227"; gene_name "CUFF.1074"; flanks "71564129-,71564770^"; structure "1-,2-"; splice_chain "71564746-,71564770-";
chr8	juncbase	alternative_donor	30667506	30657271	.	-	.	gene_id "alternative_donor.1807"; transcript_id "alternative_donor.1807"; gene_name ""; flanks "30667506-,30657271^"; structure "1^,2^"; splice_chain "30671403^,30667506^";
chr8	juncbase	alternative_donor	30669836	30657271	.	-	.	gene_id "alternative_donor.1808"; transcript_id "alternative_donor.1808"; gene_name ""; flanks "30669836-,30657271^"; structure "1^,2^"; splice_chain "30671403^,30669836^";
chr8	juncbase	alternative_acceptor	38005845	38006159	.	-	.	gene_id "alternative_acceptor.1228"; transcript_id "alternative_acceptor.1228"; gene_name "CUFF.1065"; flanks "38005845-,38006159^"; structure "1-,2-"; splice_chain "38005877-,38005845-";
chr8	juncbase	jcn_only_AD	80992550	80976828	.	-	.	gene_id "jcn_only_AD.2125"; transcript_id "jcn_only_AD.2125"; gene_name "CUFF.1082"; flanks "80992550-,80976828^"; structure "1^,2^"; splice_chain "81083442^,80992550^";
chr8	juncbase	jcn_only_AD	81032050	80976828	.	-	.	gene_id "jcn_only_AD.2126"; transcript_id "jcn_only_AD.2126"; gene_name "CUFF.1082"; flanks "81032050-,80976828^"; structure "1^,2^"; splice_chain "81083442^,81032050^";
chr8	juncbase	jcn_only_AD	81083660	80976828	.	-	.	gene_id "jcn_only_AD.2127"; transcript_id "jcn_only_AD.2127"; gene_name "CUFF.1082"; flanks "81083660-,80976828^"; structure "1^,2^"; splice_chain "81083660^,81083442^";
chr8	juncbase	jcn_only_AD	81070672	80976828	.	-	.	gene_id "jcn_only_AD.2128"; transcript_id "jcn_only_AD.2128"; gene_name "CUFF.1082"; flanks "81070672-,80976828^"; structure "1^,2^"; splice_chain "81083442^,81070672^";
chr8	juncbase	jcn_only_AD	81083256	80976828	.	-	.	gene_id "jcn_only_AD.2129"; transcript_id "jcn_only_AD.2129"; gene_name "CUFF.1082"; flanks "81083256-,80976828^"; structure "1^,2^"; splice_chain "81083442^,81083256^";
chr8	juncbase	jcn_only_AD	81130704	80976828	.	-	.	gene_id "jcn_only_AD.2130"; transcript_id "jcn_only_AD.2130"; gene_name "CUFF.1082"; flanks "81130704-,80976828^"; structure "1^,2^"; splice_chain "81130704^,81083442^";
chr8	juncbase	alternative_donor	56685786	56676539	.	-	.	gene_id "alternative_donor.1809"; transcript_id "alternative_donor.1809"; gene_name "CUFF.1071"; flanks "56685786-,56676539^"; structure "1^,2^"; splice_chain "56685828^,56685786^";
chr8	juncbase	alternative_donor	56685535	56676539	.	-	.	gene_id "alternative_donor.1810"; transcript_id "alternative_donor.1810"; gene_name "CUFF.1071"; flanks "56685535-,56676539^"; structure "1^,2^"; splice_chain "56685828^,56685535^";
chr8	juncbase	jcn_only_AD	30667506	30657271	.	-	.	gene_id "jcn_only_AD.2131"; transcript_id "jcn_only_AD.2131"; gene_name "CUFF.1064"; flanks "30667506-,30657271^"; structure "1^,2^"; splice_chain "30669836^,30667506^";
chr8	juncbase	jcn_only_AD	30671403	30657271	.	-	.	gene_id "jcn_only_AD.2132"; transcript_id "jcn_only_AD.2132"; gene_name "CUFF.1064"; flanks "30671403-,30657271^"; structure "1^,2^"; splice_chain "30671403^,30669836^";
chr8	juncbase	alternative_acceptor	22012976	22013850	.	-	.	gene_id "alternative_acceptor.1229"; transcript_id "alternative_acceptor.1229"; gene_name "CUFF.1056"; flanks "22012976-,22013850^"; structure "1-,2-"; splice_chain "22013022-,22012976-";
chr8	juncbase	cassette	56685828	56668970	.	-	.	gene_id "cassette.1003"; transcript_id "cassette.1003"; gene_name "CUFF.1071"; flanks "56685828-,56668970^"; structure "0,1-2^"; splice_chain ",56676539-56676495^";
chr8	juncbase	intron_retention	144356972	144357365	.	+	.	gene_id "intron_retention.1339"; transcript_id "intron_retention.1339"; gene_name ""; flanks "144356972-,144357365^"; structure "0,1^2-"; splice_chain ",144356972^144357365-";
chr8	juncbase	jcn_only_AD	69243542	69218833	.	-	.	gene_id "jcn_only_AD.2133"; transcript_id "jcn_only_AD.2133"; gene_name "CUFF.1073"; flanks "69243542-,69218833^"; structure "1^,2^"; splice_chain "69243542^,69224379^";
chr8	juncbase	alternative_acceptor	56663716	56675194	.	-	.	gene_id "alternative_acceptor.1230"; transcript_id "alternative_acceptor.1230"; gene_name "CUFF.1071"; flanks "56663716-,56675194^"; structure "1-,2-"; splice_chain "56668970-,56663716-";
chr8	juncbase	jcn_only_AA	38005845	38006159	.	-	.	gene_id "jcn_only_AA.1612"; transcript_id "jcn_only_AA.1612"; gene_name "CUFF.1065"; flanks "38005845-,38006159^"; structure "1-,2-"; splice_chain "38005877-,38005845-";
chr8	juncbase	jcn_only_AD	30667506	30657271	.	-	.	gene_id "jcn_only_AD.2134"; transcript_id "jcn_only_AD.2134"; gene_name ""; flanks "30667506-,30657271^"; structure "1^,2^"; splice_chain "30671403^,30667506^";
chr8	juncbase	jcn_only_AD	30669836	30657271	.	-	.	gene_id "jcn_only_AD.2135"; transcript_id "jcn_only_AD.2135"; gene_name ""; flanks "30669836-,30657271^"; structure "1^,2^"; splice_chain "30671403^,30669836^";
chr8	juncbase	intron_retention	80962680	80954903	.	-	.	gene_id "intron_retention.1340"; transcript_id "intron_retention.1340"; gene_name "CUFF.1082"; flanks "80962680-,80954903^"; structure "0,1^2-"; splice_chain ",80962680^80954903-";
chr8	juncbase	intron_retention	144356972	144357148	.	+	.	gene_id "intron_retention.1341"; transcript_id "intron_retention.1341"; gene_name ""; flanks "144356972-,144357148^"; structure "0,1^2-"; splice_chain ",144356972^144357148-";
chr8	juncbase	jcn_only_AA	120772978	120774655	.	-	.	gene_id "jcn_only_AA.1613"; transcript_id "jcn_only_AA.1613"; gene_name "CUFF.1101"; flanks "120772978-,120774655^"; structure "1-,2-"; splice_chain "120774012-,120772978-";
chr8	juncbase	alternative_donor	75233823	75272372	.	+	.	gene_id "alternative_donor.1811"; transcript_id "alternative_donor.1811"; gene_name "CUFF.1078"; flanks "75233823-,75272372^"; structure "1^,2^"; splice_chain "75233823^,75263556^";
chr8	juncbase	alternative_donor	75233480	75272372	.	+	.	gene_id "alternative_donor.1812"; transcript_id "alternative_donor.1812"; gene_name "CUFF.1078"; flanks "75233480-,75272372^"; structure "1^,2^"; splice_chain "75233480^,75263556^";
chr8	juncbase	alternative_donor	75263701	75272372	.	+	.	gene_id "alternative_donor.1813"; transcript_id "alternative_donor.1813"; gene_name "CUFF.1078"; flanks "75263701-,75272372^"; structure "1^,2^"; splice_chain "75263556^,75263701^";
chr8	juncbase	alternative_donor	75262813	75272372	.	+	.	gene_id "alternative_donor.1814"; transcript_id "alternative_donor.1814"; gene_name "CUFF.1078"; flanks "75262813-,75272372^"; structure "1^,2^"; splice_chain "75262813^,75263556^";
chr8	juncbase	jcn_only_AD	80992550	80976828	.	-	.	gene_id "jcn_only_AD.2136"; transcript_id "jcn_only_AD.2136"; gene_name "CUFF.1082"; flanks "80992550-,80976828^"; structure "1^,2^"; splice_chain "81032050^,80992550^";
chr8	juncbase	jcn_only_AD	81083660	80976828	.	-	.	gene_id "jcn_only_AD.2137"; transcript_id "jcn_only_AD.2137"; gene_name "CUFF.1082"; flanks "81083660-,80976828^"; structure "1^,2^"; splice_chain "81083660^,81032050^";
chr8	juncbase	jcn_only_AD	81070672	80976828	.	-	.	gene_id "jcn_only_AD.2138"; transcript_id "jcn_only_AD.2138"; gene_name "CUFF.1082"; flanks "81070672-,80976828^"; structure "1^,2^"; splice_chain "81070672^,81032050^";
chr8	juncbase	jcn_only_AD	81083442	80976828	.	-	.	gene_id "jcn_only_AD.2139"; transcript_id "jcn_only_AD.2139"; gene_name "CUFF.1082"; flanks "81083442-,80976828^"; structure "1^,2^"; splice_chain "81083442^,81032050^";
chr8	juncbase	jcn_only_AD	81083256	80976828	.	-	.	gene_id "jcn_only_AD.2140"; transcript_id "jcn_only_AD.2140"; gene_name "CUFF.1082"; flanks "81083256-,80976828^"; structure "1^,2^"; splice_chain "81083256^,81032050^";
chr8	juncbase	jcn_only_AD	81130704	80976828	.	-	.	gene_id "jcn_only_AD.2141"; transcript_id "jcn_only_AD.2141"; gene_name "CUFF.1082"; flanks "81130704-,80976828^"; structure "1^,2^"; splice_chain "81130704^,81032050^";
chr8	juncbase	jcn_only_AD	107371864	107531171	.	+	.	gene_id "jcn_only_AD.2142"; transcript_id "jcn_only_AD.2142"; gene_name "CUFF.1094"; flanks "107371864-,107531171^"; structure "1^,2^"; splice_chain "107371864^,107460276^";
chr8	juncbase	jcn_only_AD	106456609	106573591	.	+	.	gene_id "jcn_only_AD.2143"; transcript_id "jcn_only_AD.2143"; gene_name "CUFF.1092"; flanks "106456609-,106573591^"; structure "1^,2^"; splice_chain "106456609^,106541197^";
chr8	juncbase	jcn_only_AD	120790259	120774848	.	-	.	gene_id "jcn_only_AD.2144"; transcript_id "jcn_only_AD.2144"; gene_name "CUFF.1101"; flanks "120790259-,120774848^"; structure "1^,2^"; splice_chain "120790259^,120779243^";
chr8	juncbase	cassette	80963762	80956443	.	-	.	gene_id "cassette.1004"; transcript_id "cassette.1004"; gene_name "CUFF.1082"; flanks "80963762-,80956443^"; structure "0,1-2^"; splice_chain ",80962706-80962581^";
chr8	juncbase	intron_retention	38003481	38002833	.	-	.	gene_id "intron_retention.1342"; transcript_id "intron_retention.1342"; gene_name "CUFF.1065"; flanks "38003481-,38002833^"; structure "0,1^2-"; splice_chain ",38003481^38002833-";
chr8	juncbase	intron_retention	30651433	30648831	.	-	.	gene_id "intron_retention.1343"; transcript_id "intron_retention.1343"; gene_name "CUFF.1064"; flanks "30651433-,30648831^"; structure "0,1^2-"; splice_chain ",30651433^30648831-";
chr8	juncbase	cassette	75263701	75274119	.	+	.	gene_id "cassette.1005"; transcript_id "cassette.1005"; gene_name "CUFF.1078"; flanks "75263701-,75274119^"; structure "0,1-2^"; splice_chain ",75272372-75272545^";
chr8	juncbase	jcn_only_AA	23189521	23190914	.	-	.	gene_id "jcn_only_AA.1614"; transcript_id "jcn_only_AA.1614"; gene_name "CUFF.1059"; flanks "23189521-,23190914^"; structure "1-,2-"; splice_chain "23189521-,23186078-";
chr8	juncbase	jcn_only_AA	23186099	23190914	.	-	.	gene_id "jcn_only_AA.1615"; transcript_id "jcn_only_AA.1615"; gene_name "CUFF.1059"; flanks "23186099-,23190914^"; structure "1-,2-"; splice_chain "23186099-,23186078-";
chr8	juncbase	jcn_only_AA	144822118	144826030	.	+	.	gene_id "jcn_only_AA.1616"; transcript_id "jcn_only_AA.1616"; gene_name "CUFF.1074,CUFF.1116"; flanks "144822118-,144826030^"; structure "1-,2-"; splice_chain "144823922-,144826030-";
chr8	juncbase	jcn_only_AA	99055003	99057575	.	-	.	gene_id "jcn_only_AA.1617"; transcript_id "jcn_only_AA.1617"; gene_name "CUFF.1090"; flanks "99055003-,99057575^"; structure "1-,2-"; splice_chain "99057316-,99055003-";
chr8	juncbase	jcn_only_AD	144373780	144375142	.	+	.	gene_id "jcn_only_AD.2145"; transcript_id "jcn_only_AD.2145"; gene_name "CUFF.1114"; flanks "144373780-,144375142^"; structure "1^,2^"; splice_chain "144373780^,144373937^";
chr8	juncbase	jcn_only_AA	23189521	23190914	.	-	.	gene_id "jcn_only_AA.1618"; transcript_id "jcn_only_AA.1618"; gene_name "CUFF.1059"; flanks "23189521-,23190914^"; structure "1-,2-"; splice_chain "23189521-,23186099-";
chr8	juncbase	jcn_only_AA	23186078	23190914	.	-	.	gene_id "jcn_only_AA.1619"; transcript_id "jcn_only_AA.1619"; gene_name "CUFF.1059"; flanks "23186078-,23190914^"; structure "1-,2-"; splice_chain "23186099-,23186078-";
chr8	juncbase	intron_retention	56676196	56675587	.	-	.	gene_id "intron_retention.1344"; transcript_id "intron_retention.1344"; gene_name "CUFF.1071"; flanks "56676196-,56675587^"; structure "0,1^2-"; splice_chain ",56676196^56675587-";
chr8	juncbase	jcn_only_AD	80992550	80976828	.	-	.	gene_id "jcn_only_AD.2146"; transcript_id "jcn_only_AD.2146"; gene_name "CUFF.1082"; flanks "80992550-,80976828^"; structure "1^,2^"; splice_chain "81130704^,80992550^";
chr8	juncbase	jcn_only_AD	81032050	80976828	.	-	.	gene_id "jcn_only_AD.2147"; transcript_id "jcn_only_AD.2147"; gene_name "CUFF.1082"; flanks "81032050-,80976828^"; structure "1^,2^"; splice_chain "81130704^,81032050^";
chr8	juncbase	jcn_only_AD	81083660	80976828	.	-	.	gene_id "jcn_only_AD.2148"; transcript_id "jcn_only_AD.2148"; gene_name "CUFF.1082"; flanks "81083660-,80976828^"; structure "1^,2^"; splice_chain "81130704^,81083660^";
chr8	juncbase	jcn_only_AD	81070672	80976828	.	-	.	gene_id "jcn_only_AD.2149"; transcript_id "jcn_only_AD.2149"; gene_name "CUFF.1082"; flanks "81070672-,80976828^"; structure "1^,2^"; splice_chain "81130704^,81070672^";
chr8	juncbase	jcn_only_AD	81083442	80976828	.	-	.	gene_id "jcn_only_AD.2150"; transcript_id "jcn_only_AD.2150"; gene_name "CUFF.1082"; flanks "81083442-,80976828^"; structure "1^,2^"; splice_chain "81130704^,81083442^";
chr8	juncbase	jcn_only_AD	81083256	80976828	.	-	.	gene_id "jcn_only_AD.2151"; transcript_id "jcn_only_AD.2151"; gene_name "CUFF.1082"; flanks "81083256-,80976828^"; structure "1^,2^"; splice_chain "81130704^,81083256^";
chr8	juncbase	alternative_donor	10683662	10584176	.	-	.	gene_id "alternative_donor.1815"; transcript_id "alternative_donor.1815"; gene_name "CUFF.1064"; flanks "10683662-,10584176^"; structure "1^,2^"; splice_chain "10683662^,10587706^";
chr8	juncbase	cassette	80962680	80954903	.	-	.	gene_id "cassette.1006"; transcript_id "cassette.1006"; gene_name "CUFF.1082"; flanks "80962680-,80954903^"; structure "0,1-2^"; splice_chain ",80956443-80956402^";
chr8	juncbase	cassette	80963762	80954903	.	-	.	gene_id "cassette.1007"; transcript_id "cassette.1007"; gene_name "CUFF.1082"; flanks "80963762-,80954903^"; structure "0,1-2^"; splice_chain ",80956443-80956402^";
chr8	juncbase	alternative_donor	75233823	75272372	.	+	.	gene_id "alternative_donor.1816"; transcript_id "alternative_donor.1816"; gene_name "CUFF.1078"; flanks "75233823-,75272372^"; structure "1^,2^"; splice_chain "75233823^,75262813^";
chr8	juncbase	alternative_donor	75233480	75272372	.	+	.	gene_id "alternative_donor.1817"; transcript_id "alternative_donor.1817"; gene_name "CUFF.1078"; flanks "75233480-,75272372^"; structure "1^,2^"; splice_chain "75233480^,75262813^";
chr8	juncbase	alternative_donor	75263701	75272372	.	+	.	gene_id "alternative_donor.1818"; transcript_id "alternative_donor.1818"; gene_name "CUFF.1078"; flanks "75263701-,75272372^"; structure "1^,2^"; splice_chain "75262813^,75263701^";
chr8	juncbase	alternative_donor	75263556	75272372	.	+	.	gene_id "alternative_donor.1819"; transcript_id "alternative_donor.1819"; gene_name "CUFF.1078"; flanks "75263556-,75272372^"; structure "1^,2^"; splice_chain "75262813^,75263556^";
chr8	juncbase	jcn_only_AA	74888196	74890991	.	+	.	gene_id "jcn_only_AA.1620"; transcript_id "jcn_only_AA.1620"; gene_name "CUFF.1077"; flanks "74888196-,74890991^"; structure "1-,2-"; splice_chain "74888540-,74890991-";
chr8	juncbase	cassette	22012073	22011552	.	-	.	gene_id "cassette.1008"; transcript_id "cassette.1008"; gene_name "CUFF.1056"; flanks "22012073-,22011552^"; structure "0,1-2^"; splice_chain ",22011726-22011655^";
chr8	juncbase	intron_retention	38002740	38001904	.	-	.	gene_id "intron_retention.1345"; transcript_id "intron_retention.1345"; gene_name "CUFF.1065"; flanks "38002740-,38001904^"; structure "0,1^2-"; splice_chain ",38002740^38001904-";
chr8	juncbase	cassette	80963762	80956443	.	-	.	gene_id "cassette.1009"; transcript_id "cassette.1009"; gene_name "CUFF.1082"; flanks "80963762-,80956443^"; structure "0,1-2^"; splice_chain ",80962706-80962680^";
chr8	juncbase	cassette	80963762	80954903	.	-	.	gene_id "cassette.1010"; transcript_id "cassette.1010"; gene_name "CUFF.1082"; flanks "80963762-,80954903^"; structure "0,1-2^"; splice_chain ",80962706-80962680^";
chr8	juncbase	cassette	80963487	80954903	.	-	.	gene_id "cassette.1011"; transcript_id "cassette.1011"; gene_name "CUFF.1082"; flanks "80963487-,80954903^"; structure "0,1-2^"; splice_chain ",80962706-80962680^";
chr8	juncbase	alternative_acceptor	56652777	56663523	.	-	.	gene_id "alternative_acceptor.1231"; transcript_id "alternative_acceptor.1231"; gene_name "CUFF.1071"; flanks "56652777-,56663523^"; structure "1-,2-"; splice_chain "56657680-,56652777-";
chr8	juncbase	alternative_acceptor	56637818	56663523	.	-	.	gene_id "alternative_acceptor.1232"; transcript_id "alternative_acceptor.1232"; gene_name "CUFF.1071"; flanks "56637818-,56663523^"; structure "1-,2-"; splice_chain "56657680-,56637818-";
chr8	juncbase	alternative_acceptor	56656179	56663523	.	-	.	gene_id "alternative_acceptor.1233"; transcript_id "alternative_acceptor.1233"; gene_name "CUFF.1071"; flanks "56656179-,56663523^"; structure "1-,2-"; splice_chain "56657680-,56656179-";
chr8	juncbase	intron_retention	80963762	80954903	.	-	.	gene_id "intron_retention.1346"; transcript_id "intron_retention.1346"; gene_name "CUFF.1082"; flanks "80963762-,80954903^"; structure "0,1^2-"; splice_chain ",80963762^80954903-";
chr8	juncbase	jcn_only_AD	75233480	75272372	.	+	.	gene_id "jcn_only_AD.2152"; transcript_id "jcn_only_AD.2152"; gene_name "CUFF.1078"; flanks "75233480-,75272372^"; structure "1^,2^"; splice_chain "75233480^,75233823^";
chr8	juncbase	jcn_only_AD	75263701	75272372	.	+	.	gene_id "jcn_only_AD.2153"; transcript_id "jcn_only_AD.2153"; gene_name "CUFF.1078"; flanks "75263701-,75272372^"; structure "1^,2^"; splice_chain "75233823^,75263701^";
chr8	juncbase	jcn_only_AD	75263556	75272372	.	+	.	gene_id "jcn_only_AD.2154"; transcript_id "jcn_only_AD.2154"; gene_name "CUFF.1078"; flanks "75263556-,75272372^"; structure "1^,2^"; splice_chain "75233823^,75263556^";
chr8	juncbase	jcn_only_AD	75262813	75272372	.	+	.	gene_id "jcn_only_AD.2155"; transcript_id "jcn_only_AD.2155"; gene_name "CUFF.1078"; flanks "75262813-,75272372^"; structure "1^,2^"; splice_chain "75233823^,75262813^";
chr8	juncbase	intron_retention	144356972	144358067	.	+	.	gene_id "intron_retention.1347"; transcript_id "intron_retention.1347"; gene_name ""; flanks "144356972-,144358067^"; structure "0,1^2-"; splice_chain ",144356972^144358067-";
chr8	juncbase	alternative_acceptor	17491722	17501080	.	+	.	gene_id "alternative_acceptor.1234"; transcript_id "alternative_acceptor.1234"; gene_name "CUFF.1094"; flanks "17491722-,17501080^"; structure "1-,2-"; splice_chain "17500122-,17501080-";
chr8	juncbase	jcn_only_AA	17491722	17501080	.	+	.	gene_id "jcn_only_AA.1621"; transcript_id "jcn_only_AA.1621"; gene_name "CUFF.1094"; flanks "17491722-,17501080^"; structure "1-,2-"; splice_chain "17500122-,17501080-";
chr8	juncbase	intron_retention	99057736	99057627	.	-	.	gene_id "intron_retention.1348"; transcript_id "intron_retention.1348"; gene_name ""; flanks "99057736-,99057627^"; structure "0,1^2-"; splice_chain ",99057736^99057627-";
chr8	juncbase	jcn_only_AD	56685786	56676539	.	-	.	gene_id "jcn_only_AD.2156"; transcript_id "jcn_only_AD.2156"; gene_name "CUFF.1071"; flanks "56685786-,56676539^"; structure "1^,2^"; splice_chain "56685786^,56685535^";
chr8	juncbase	jcn_only_AD	56685828	56676539	.	-	.	gene_id "jcn_only_AD.2157"; transcript_id "jcn_only_AD.2157"; gene_name "CUFF.1071"; flanks "56685828-,56676539^"; structure "1^,2^"; splice_chain "56685828^,56685535^";
chr8	juncbase	intron_retention	38003481	38001904	.	-	.	gene_id "intron_retention.1349"; transcript_id "intron_retention.1349"; gene_name "CUFF.1065"; flanks "38003481-,38001904^"; structure "0,1^2-"; splice_chain ",38003481^38001904-";
chr8	juncbase	alternative_donor	107371864	107531171	.	+	.	gene_id "alternative_donor.1820"; transcript_id "alternative_donor.1820"; gene_name "CUFF.1094"; flanks "107371864-,107531171^"; structure "1^,2^"; splice_chain "107371864^,107460276^";
chr8	juncbase	jcn_only_AD	99057171	99055003	.	-	.	gene_id "jcn_only_AD.2158"; transcript_id "jcn_only_AD.2158"; gene_name ""; flanks "99057171-,99055003^"; structure "1^,2^"; splice_chain "99057575^,99057171^";
chr8	juncbase	jcn_only_AD	99057055	99055003	.	-	.	gene_id "jcn_only_AD.2159"; transcript_id "jcn_only_AD.2159"; gene_name ""; flanks "99057055-,99055003^"; structure "1^,2^"; splice_chain "99057575^,99057055^";
chr8	juncbase	alternative_donor	56685828	56676539	.	-	.	gene_id "alternative_donor.1821"; transcript_id "alternative_donor.1821"; gene_name ""; flanks "56685828-,56676539^"; structure "1^,2^"; splice_chain "56685828^,56685786^";
chr8	juncbase	alternative_donor	56685535	56676539	.	-	.	gene_id "alternative_donor.1822"; transcript_id "alternative_donor.1822"; gene_name ""; flanks "56685535-,56676539^"; structure "1^,2^"; splice_chain "56685786^,56685535^";
chr8	juncbase	intron_retention	30670302	30657164	.	-	.	gene_id "intron_retention.1350"; transcript_id "intron_retention.1350"; gene_name ""; flanks "30670302-,30657164^"; structure "0,1^2-"; splice_chain ",30670302^30657164-";
chr8	juncbase	jcn_only_AD	74891096	74893390	.	+	.	gene_id "jcn_only_AD.2160"; transcript_id "jcn_only_AD.2160"; gene_name "CUFF.1077"; flanks "74891096-,74893390^"; structure "1^,2^"; splice_chain "74891096^,74891110^";
chr8	juncbase	jcn_only_AD	74891406	74893390	.	+	.	gene_id "jcn_only_AD.2161"; transcript_id "jcn_only_AD.2161"; gene_name "CUFF.1077"; flanks "74891406-,74893390^"; structure "1^,2^"; splice_chain "74891110^,74891406^";
chr8	juncbase	jcn_only_AD	75233823	75272372	.	+	.	gene_id "jcn_only_AD.2162"; transcript_id "jcn_only_AD.2162"; gene_name "CUFF.1078"; flanks "75233823-,75272372^"; structure "1^,2^"; splice_chain "75233480^,75233823^";
chr8	juncbase	jcn_only_AD	75263701	75272372	.	+	.	gene_id "jcn_only_AD.2163"; transcript_id "jcn_only_AD.2163"; gene_name "CUFF.1078"; flanks "75263701-,75272372^"; structure "1^,2^"; splice_chain "75233480^,75263701^";
chr8	juncbase	jcn_only_AD	75263556	75272372	.	+	.	gene_id "jcn_only_AD.2164"; transcript_id "jcn_only_AD.2164"; gene_name "CUFF.1078"; flanks "75263556-,75272372^"; structure "1^,2^"; splice_chain "75233480^,75263556^";
chr8	juncbase	jcn_only_AD	75262813	75272372	.	+	.	gene_id "jcn_only_AD.2165"; transcript_id "jcn_only_AD.2165"; gene_name "CUFF.1078"; flanks "75262813-,75272372^"; structure "1^,2^"; splice_chain "75233480^,75262813^";
chr8	juncbase	jcn_only_AA	99054946	99057171	.	-	.	gene_id "jcn_only_AA.1622"; transcript_id "jcn_only_AA.1622"; gene_name "CUFF.1090"; flanks "99054946-,99057171^"; structure "1-,2-"; splice_chain "99054946-,99037966-";
chr8	juncbase	jcn_only_AA	99055003	99057171	.	-	.	gene_id "jcn_only_AA.1623"; transcript_id "jcn_only_AA.1623"; gene_name "CUFF.1090"; flanks "99055003-,99057171^"; structure "1-,2-"; splice_chain "99055003-,99037966-";
chr8	juncbase	jcn_only_AD	107691520	107695427	.	+	.	gene_id "jcn_only_AD.2166"; transcript_id "jcn_only_AD.2166"; gene_name "CUFF.1094"; flanks "107691520-,107695427^"; structure "1^,2^"; splice_chain "107691520^,107694773^";
chr8	juncbase	alternative_donor	22014509	22012976	.	-	.	gene_id "alternative_donor.1823"; transcript_id "alternative_donor.1823"; gene_name "CUFF.1104"; flanks "22014509-,22012976^"; structure "1^,2^"; splice_chain "22014509^,22013850^";
chr8	juncbase	alternative_donor	120790259	120774848	.	-	.	gene_id "alternative_donor.1824"; transcript_id "alternative_donor.1824"; gene_name "CUFF.1101"; flanks "120790259-,120774848^"; structure "1^,2^"; splice_chain "120790259^,120779243^";
chr8	juncbase	alternative_acceptor	120772978	120774655	.	-	.	gene_id "alternative_acceptor.1235"; transcript_id "alternative_acceptor.1235"; gene_name "CUFF.1101"; flanks "120772978-,120774655^"; structure "1-,2-"; splice_chain "120774012-,120772978-";
chr8	juncbase	intron_retention	56663523	56657680	.	-	.	gene_id "intron_retention.1351"; transcript_id "intron_retention.1351"; gene_name ""; flanks "56663523-,56657680^"; structure "0,1^2-"; splice_chain ",56663523^56657680-";
chr8	juncbase	alternative_donor	56685786	56676539	.	-	.	gene_id "alternative_donor.1825"; transcript_id "alternative_donor.1825"; gene_name "CUFF.1071"; flanks "56685786-,56676539^"; structure "1^,2^"; splice_chain "56685786^,56685535^";
chr8	juncbase	alternative_donor	56685828	56676539	.	-	.	gene_id "alternative_donor.1826"; transcript_id "alternative_donor.1826"; gene_name "CUFF.1071"; flanks "56685828-,56676539^"; structure "1^,2^"; splice_chain "56685828^,56685535^";
chr8	juncbase	jcn_only_AA	144373937	144375142	.	+	.	gene_id "jcn_only_AA.1624"; transcript_id "jcn_only_AA.1624"; gene_name "CUFF.1089,CUFF.1114"; flanks "144373937-,144375142^"; structure "1-,2-"; splice_chain "144374313-,144375142-";
chr8	juncbase	jcn_only_AA	56652777	56657620	.	-	.	gene_id "jcn_only_AA.1625"; transcript_id "jcn_only_AA.1625"; gene_name ""; flanks "56652777-,56657620^"; structure "1-,2-"; splice_chain "56656179-,56652777-";
chr8	juncbase	alternative_donor	106646585	106800946	.	+	.	gene_id "alternative_donor.1827"; transcript_id "alternative_donor.1827"; gene_name "CUFF.1092"; flanks "106646585-,106800946^"; structure "1^,2^"; splice_chain "106646585^,106703163^";
chr8	juncbase	alternative_acceptor	143922641	143995379	.	+	.	gene_id "alternative_acceptor.1236"; transcript_id "alternative_acceptor.1236"; gene_name "CUFF.1111"; flanks "143922641-,143995379^"; structure "1-,2-"; splice_chain "143927811-,143995379-";
chr8	juncbase	alternative_donor	99057943	99057627	.	-	.	gene_id "alternative_donor.1828"; transcript_id "alternative_donor.1828"; gene_name ""; flanks "99057943-,99057627^"; structure "1^,2^"; splice_chain "99057943^,99057736^";
chr8	juncbase	alternative_donor	80992550	80976828	.	-	.	gene_id "alternative_donor.1829"; transcript_id "alternative_donor.1829"; gene_name "CUFF.1082"; flanks "80992550-,80976828^"; structure "1^,2^"; splice_chain "81083442^,80992550^";
chr8	juncbase	alternative_donor	81032050	80976828	.	-	.	gene_id "alternative_donor.1830"; transcript_id "alternative_donor.1830"; gene_name "CUFF.1082"; flanks "81032050-,80976828^"; structure "1^,2^"; splice_chain "81083442^,81032050^";
chr8	juncbase	alternative_donor	81083660	80976828	.	-	.	gene_id "alternative_donor.1831"; transcript_id "alternative_donor.1831"; gene_name "CUFF.1082"; flanks "81083660-,80976828^"; structure "1^,2^"; splice_chain "81083660^,81083442^";
chr8	juncbase	alternative_donor	81070672	80976828	.	-	.	gene_id "alternative_donor.1832"; transcript_id "alternative_donor.1832"; gene_name "CUFF.1082"; flanks "81070672-,80976828^"; structure "1^,2^"; splice_chain "81083442^,81070672^";
chr8	juncbase	alternative_donor	81083256	80976828	.	-	.	gene_id "alternative_donor.1833"; transcript_id "alternative_donor.1833"; gene_name "CUFF.1082"; flanks "81083256-,80976828^"; structure "1^,2^"; splice_chain "81083442^,81083256^";
chr8	juncbase	alternative_donor	81130704	80976828	.	-	.	gene_id "alternative_donor.1834"; transcript_id "alternative_donor.1834"; gene_name "CUFF.1082"; flanks "81130704-,80976828^"; structure "1^,2^"; splice_chain "81130704^,81083442^";
chr8	juncbase	jcn_only_AD	82192909	82195601	.	+	.	gene_id "jcn_only_AD.2167"; transcript_id "jcn_only_AD.2167"; gene_name "CUFF.1083"; flanks "82192909-,82195601^"; structure "1^,2^"; splice_chain "82192909^,82193548^";
chr8	juncbase	alternative_donor	144373780	144375142	.	+	.	gene_id "alternative_donor.1835"; transcript_id "alternative_donor.1835"; gene_name "CUFF.1114"; flanks "144373780-,144375142^"; structure "1^,2^"; splice_chain "144373780^,144373937^";
chr8	juncbase	alternative_donor	56663523	56652777	.	-	.	gene_id "alternative_donor.1836"; transcript_id "alternative_donor.1836"; gene_name ""; flanks "56663523-,56652777^"; structure "1^,2^"; splice_chain "56663523^,56656040^";
chr8	juncbase	alternative_donor	56657620	56652777	.	-	.	gene_id "alternative_donor.1837"; transcript_id "alternative_donor.1837"; gene_name ""; flanks "56657620-,56652777^"; structure "1^,2^"; splice_chain "56657620^,56656040^";
chr8	juncbase	jcn_only_AA	71521068	71564048	.	+	.	gene_id "jcn_only_AA.1626"; transcript_id "jcn_only_AA.1626"; gene_name "CUFF.1074"; flanks "71521068-,71564048^"; structure "1-,2-"; splice_chain "71543340-,71564048-";
chr8	juncbase	alternative_acceptor	99054946	99057171	.	-	.	gene_id "alternative_acceptor.1237"; transcript_id "alternative_acceptor.1237"; gene_name "CUFF.1090"; flanks "99054946-,99057171^"; structure "1-,2-"; splice_chain "99055003-,99054946-";
chr8	juncbase	alternative_acceptor	99037966	99057171	.	-	.	gene_id "alternative_acceptor.1238"; transcript_id "alternative_acceptor.1238"; gene_name "CUFF.1090"; flanks "99037966-,99057171^"; structure "1-,2-"; splice_chain "99055003-,99037966-";
chr8	juncbase	alternative_donor	56663523	56652777	.	-	.	gene_id "alternative_donor.1838"; transcript_id "alternative_donor.1838"; gene_name ""; flanks "56663523-,56652777^"; structure "1^,2^"; splice_chain "56663523^,56657620^";
chr8	juncbase	alternative_donor	56656040	56652777	.	-	.	gene_id "alternative_donor.1839"; transcript_id "alternative_donor.1839"; gene_name ""; flanks "56656040-,56652777^"; structure "1^,2^"; splice_chain "56657620^,56656040^";
chr8	juncbase	alternative_donor	75233480	75272372	.	+	.	gene_id "alternative_donor.1840"; transcript_id "alternative_donor.1840"; gene_name "CUFF.1078"; flanks "75233480-,75272372^"; structure "1^,2^"; splice_chain "75233480^,75233823^";
chr8	juncbase	alternative_donor	75263701	75272372	.	+	.	gene_id "alternative_donor.1841"; transcript_id "alternative_donor.1841"; gene_name "CUFF.1078"; flanks "75263701-,75272372^"; structure "1^,2^"; splice_chain "75233823^,75263701^";
chr8	juncbase	alternative_donor	75263556	75272372	.	+	.	gene_id "alternative_donor.1842"; transcript_id "alternative_donor.1842"; gene_name "CUFF.1078"; flanks "75263556-,75272372^"; structure "1^,2^"; splice_chain "75233823^,75263556^";
chr8	juncbase	alternative_donor	75262813	75272372	.	+	.	gene_id "alternative_donor.1843"; transcript_id "alternative_donor.1843"; gene_name "CUFF.1078"; flanks "75262813-,75272372^"; structure "1^,2^"; splice_chain "75233823^,75262813^";
chr8	juncbase	jcn_only_AD	56657620	56652777	.	-	.	gene_id "jcn_only_AD.2168"; transcript_id "jcn_only_AD.2168"; gene_name ""; flanks "56657620-,56652777^"; structure "1^,2^"; splice_chain "56663523^,56657620^";
chr8	juncbase	jcn_only_AD	56656040	56652777	.	-	.	gene_id "jcn_only_AD.2169"; transcript_id "jcn_only_AD.2169"; gene_name ""; flanks "56656040-,56652777^"; structure "1^,2^"; splice_chain "56663523^,56656040^";
chr8	juncbase	jcn_only_AD	74891096	74893390	.	+	.	gene_id "jcn_only_AD.2170"; transcript_id "jcn_only_AD.2170"; gene_name "CUFF.1077"; flanks "74891096-,74893390^"; structure "1^,2^"; splice_chain "74891096^,74891406^";
chr8	juncbase	jcn_only_AD	74891110	74893390	.	+	.	gene_id "jcn_only_AD.2171"; transcript_id "jcn_only_AD.2171"; gene_name "CUFF.1077"; flanks "74891110-,74893390^"; structure "1^,2^"; splice_chain "74891110^,74891406^";
chr8	juncbase	jcn_only_AD	99057171	99055003	.	-	.	gene_id "jcn_only_AD.2172"; transcript_id "jcn_only_AD.2172"; gene_name "CUFF.1065"; flanks "99057171-,99055003^"; structure "1^,2^"; splice_chain "99057171^,99057055^";
chr8	juncbase	jcn_only_AD	99057575	99055003	.	-	.	gene_id "jcn_only_AD.2173"; transcript_id "jcn_only_AD.2173"; gene_name "CUFF.1065"; flanks "99057575-,99055003^"; structure "1^,2^"; splice_chain "99057575^,99057055^";
chr8	juncbase	alternative_donor	80992550	80976828	.	-	.	gene_id "alternative_donor.1844"; transcript_id "alternative_donor.1844"; gene_name "CUFF.1082"; flanks "80992550-,80976828^"; structure "1^,2^"; splice_chain "81032050^,80992550^";
chr8	juncbase	alternative_donor	81083660	80976828	.	-	.	gene_id "alternative_donor.1845"; transcript_id "alternative_donor.1845"; gene_name "CUFF.1082"; flanks "81083660-,80976828^"; structure "1^,2^"; splice_chain "81083660^,81032050^";
chr8	juncbase	alternative_donor	81070672	80976828	.	-	.	gene_id "alternative_donor.1846"; transcript_id "alternative_donor.1846"; gene_name "CUFF.1082"; flanks "81070672-,80976828^"; structure "1^,2^"; splice_chain "81070672^,81032050^";
chr8	juncbase	alternative_donor	81083442	80976828	.	-	.	gene_id "alternative_donor.1847"; transcript_id "alternative_donor.1847"; gene_name "CUFF.1082"; flanks "81083442-,80976828^"; structure "1^,2^"; splice_chain "81083442^,81032050^";
chr8	juncbase	alternative_donor	81083256	80976828	.	-	.	gene_id "alternative_donor.1848"; transcript_id "alternative_donor.1848"; gene_name "CUFF.1082"; flanks "81083256-,80976828^"; structure "1^,2^"; splice_chain "81083256^,81032050^";
chr8	juncbase	alternative_donor	81130704	80976828	.	-	.	gene_id "alternative_donor.1849"; transcript_id "alternative_donor.1849"; gene_name "CUFF.1082"; flanks "81130704-,80976828^"; structure "1^,2^"; splice_chain "81130704^,81032050^";
chr8	juncbase	jcn_only_AA	144356972	144358173	.	+	.	gene_id "jcn_only_AA.1627"; transcript_id "jcn_only_AA.1627"; gene_name ""; flanks "144356972-,144358173^"; structure "1-,2-"; splice_chain "144357365-,144358173-";
chr8	juncbase	jcn_only_AA	144356972	144358067	.	+	.	gene_id "jcn_only_AA.1628"; transcript_id "jcn_only_AA.1628"; gene_name ""; flanks "144356972-,144358067^"; structure "1-,2-"; splice_chain "144357365-,144358067-";
chr8	juncbase	jcn_only_AA	144356972	144357148	.	+	.	gene_id "jcn_only_AA.1629"; transcript_id "jcn_only_AA.1629"; gene_name ""; flanks "144356972-,144357148^"; structure "1-,2-"; splice_chain "144357148-,144357365-";
chr8	juncbase	jcn_only_AD	80992550	80976828	.	-	.	gene_id "jcn_only_AD.2174"; transcript_id "jcn_only_AD.2174"; gene_name "CUFF.1082"; flanks "80992550-,80976828^"; structure "1^,2^"; splice_chain "81083660^,80992550^";
chr8	juncbase	jcn_only_AD	81032050	80976828	.	-	.	gene_id "jcn_only_AD.2175"; transcript_id "jcn_only_AD.2175"; gene_name "CUFF.1082"; flanks "81032050-,80976828^"; structure "1^,2^"; splice_chain "81083660^,81032050^";
chr8	juncbase	jcn_only_AD	81070672	80976828	.	-	.	gene_id "jcn_only_AD.2176"; transcript_id "jcn_only_AD.2176"; gene_name "CUFF.1082"; flanks "81070672-,80976828^"; structure "1^,2^"; splice_chain "81083660^,81070672^";
chr8	juncbase	jcn_only_AD	81083442	80976828	.	-	.	gene_id "jcn_only_AD.2177"; transcript_id "jcn_only_AD.2177"; gene_name "CUFF.1082"; flanks "81083442-,80976828^"; structure "1^,2^"; splice_chain "81083660^,81083442^";
chr8	juncbase	jcn_only_AD	81083256	80976828	.	-	.	gene_id "jcn_only_AD.2178"; transcript_id "jcn_only_AD.2178"; gene_name "CUFF.1082"; flanks "81083256-,80976828^"; structure "1^,2^"; splice_chain "81083660^,81083256^";
chr8	juncbase	jcn_only_AD	81130704	80976828	.	-	.	gene_id "jcn_only_AD.2179"; transcript_id "jcn_only_AD.2179"; gene_name "CUFF.1082"; flanks "81130704-,80976828^"; structure "1^,2^"; splice_chain "81130704^,81083660^";
chr8	juncbase	alternative_donor	30671403	30657271	.	-	.	gene_id "alternative_donor.1850"; transcript_id "alternative_donor.1850"; gene_name "CUFF.1064"; flanks "30671403-,30657271^"; structure "1^,2^"; splice_chain "30671403^,30667506^";
chr8	juncbase	alternative_donor	30669836	30657271	.	-	.	gene_id "alternative_donor.1851"; transcript_id "alternative_donor.1851"; gene_name "CUFF.1064"; flanks "30669836-,30657271^"; structure "1^,2^"; splice_chain "30669836^,30667506^";
chr8	juncbase	alternative_acceptor	56657680	56663523	.	-	.	gene_id "alternative_acceptor.1239"; transcript_id "alternative_acceptor.1239"; gene_name "CUFF.1071"; flanks "56657680-,56663523^"; structure "1-,2-"; splice_chain "56657680-,56637818-";
chr8	juncbase	alternative_acceptor	56652777	56663523	.	-	.	gene_id "alternative_acceptor.1240"; transcript_id "alternative_acceptor.1240"; gene_name "CUFF.1071"; flanks "56652777-,56663523^"; structure "1-,2-"; splice_chain "56652777-,56637818-";
chr8	juncbase	alternative_acceptor	56656179	56663523	.	-	.	gene_id "alternative_acceptor.1241"; transcript_id "alternative_acceptor.1241"; gene_name "CUFF.1071"; flanks "56656179-,56663523^"; structure "1-,2-"; splice_chain "56656179-,56637818-";
chr8	juncbase	jcn_only_AA	99055003	99057171	.	-	.	gene_id "jcn_only_AA.1630"; transcript_id "jcn_only_AA.1630"; gene_name "CUFF.1090"; flanks "99055003-,99057171^"; structure "1-,2-"; splice_chain "99055003-,99054946-";
chr8	juncbase	jcn_only_AA	99037966	99057171	.	-	.	gene_id "jcn_only_AA.1631"; transcript_id "jcn_only_AA.1631"; gene_name "CUFF.1090"; flanks "99037966-,99057171^"; structure "1-,2-"; splice_chain "99054946-,99037966-";
chr8	juncbase	jcn_only_AA	124629083	124646554	.	+	.	gene_id "jcn_only_AA.1632"; transcript_id "jcn_only_AA.1632"; gene_name "CUFF.1102"; flanks "124629083-,124646554^"; structure "1-,2-"; splice_chain "124637927-,124646554-";
chr8	juncbase	alternative_acceptor	144373937	144375142	.	+	.	gene_id "alternative_acceptor.1242"; transcript_id "alternative_acceptor.1242"; gene_name "CUFF.1089,CUFF.1114"; flanks "144373937-,144375142^"; structure "1-,2-"; splice_chain "144374313-,144375142-";
chr8	juncbase	jcn_only_AD	144818108	144822029	.	+	.	gene_id "jcn_only_AD.2180"; transcript_id "jcn_only_AD.2180"; gene_name "CUFF.1116"; flanks "144818108-,144822029^"; structure "1^,2^"; splice_chain "144818108^,144821673^";
chr8	juncbase	alternative_donor	69243542	69218833	.	-	.	gene_id "alternative_donor.1852"; transcript_id "alternative_donor.1852"; gene_name "CUFF.1073"; flanks "69243542-,69218833^"; structure "1^,2^"; splice_chain "69243542^,69224379^";
chr8	juncbase	jcn_only_AA	71543525	71558280	.	+	.	gene_id "jcn_only_AA.1633"; transcript_id "jcn_only_AA.1633"; gene_name ""; flanks "71543525-,71558280^"; structure "1-,2-"; splice_chain "71544670-,71558280-";
chr8	juncbase	jcn_only_AD	56663523	56652777	.	-	.	gene_id "jcn_only_AD.2181"; transcript_id "jcn_only_AD.2181"; gene_name ""; flanks "56663523-,56652777^"; structure "1^,2^"; splice_chain "56663523^,56657620^";
chr8	juncbase	jcn_only_AD	56656040	56652777	.	-	.	gene_id "jcn_only_AD.2182"; transcript_id "jcn_only_AD.2182"; gene_name ""; flanks "56656040-,56652777^"; structure "1^,2^"; splice_chain "56657620^,56656040^";
chr8	juncbase	cassette	144375235	144377910	.	+	.	gene_id "cassette.1012"; transcript_id "cassette.1012"; gene_name "CUFF.1114"; flanks "144375235-,144377910^"; structure "0,1-2^"; splice_chain ",144377549-144377640^";
chr8	juncbase	cassette	23261467	23225947	.	-	.	gene_id "cassette.1013"; transcript_id "cassette.1013"; gene_name "CUFF.1059"; flanks "23261467-,23225947^"; structure "0,1-2^"; splice_chain ",23228275-23228156^";
chr8	juncbase	jcn_only_AD	74884856	74888065	.	+	.	gene_id "jcn_only_AD.2183"; transcript_id "jcn_only_AD.2183"; gene_name "CUFF.1077"; flanks "74884856-,74888065^"; structure "1^,2^"; splice_chain "74884856^,74885228^";
chr8	juncbase	intron_retention	56675194	56668970	.	-	.	gene_id "intron_retention.1352"; transcript_id "intron_retention.1352"; gene_name ""; flanks "56675194-,56668970^"; structure "0,1^2-"; splice_chain ",56675194^56668970-";
chr8	juncbase	intron_retention	99057575	99055003	.	-	.	gene_id "intron_retention.1353"; transcript_id "intron_retention.1353"; gene_name ""; flanks "99057575-,99055003^"; structure "0,1^2-"; splice_chain ",99057575^99055003-";
chr8	juncbase	jcn_only_AA	56657680	56663523	.	-	.	gene_id "jcn_only_AA.1634"; transcript_id "jcn_only_AA.1634"; gene_name "CUFF.1071"; flanks "56657680-,56663523^"; structure "1-,2-"; splice_chain "56657680-,56637818-";
chr8	juncbase	jcn_only_AA	56652777	56663523	.	-	.	gene_id "jcn_only_AA.1635"; transcript_id "jcn_only_AA.1635"; gene_name "CUFF.1071"; flanks "56652777-,56663523^"; structure "1-,2-"; splice_chain "56652777-,56637818-";
chr8	juncbase	jcn_only_AA	56656179	56663523	.	-	.	gene_id "jcn_only_AA.1636"; transcript_id "jcn_only_AA.1636"; gene_name "CUFF.1071"; flanks "56656179-,56663523^"; structure "1-,2-"; splice_chain "56656179-,56637818-";
chr8	juncbase	intron_retention	103572800	103572989	.	+	.	gene_id "intron_retention.1354"; transcript_id "intron_retention.1354"; gene_name "CUFF.1091"; flanks "103572800-,103572989^"; structure "0,1^2-"; splice_chain ",103572800^103572989-";
chr8	juncbase	cassette	144349654	144356874	.	+	.	gene_id "cassette.1014"; transcript_id "cassette.1014"; gene_name "CUFF.1112"; flanks "144349654-,144356874^"; structure "0,1-2^"; splice_chain ",144351530-144351690^";
chr8	juncbase	jcn_only_AD	80992550	80976828	.	-	.	gene_id "jcn_only_AD.2184"; transcript_id "jcn_only_AD.2184"; gene_name "CUFF.1082"; flanks "80992550-,80976828^"; structure "1^,2^"; splice_chain "81070672^,80992550^";
chr8	juncbase	jcn_only_AD	81032050	80976828	.	-	.	gene_id "jcn_only_AD.2185"; transcript_id "jcn_only_AD.2185"; gene_name "CUFF.1082"; flanks "81032050-,80976828^"; structure "1^,2^"; splice_chain "81070672^,81032050^";
chr8	juncbase	jcn_only_AD	81083660	80976828	.	-	.	gene_id "jcn_only_AD.2186"; transcript_id "jcn_only_AD.2186"; gene_name "CUFF.1082"; flanks "81083660-,80976828^"; structure "1^,2^"; splice_chain "81083660^,81070672^";
chr8	juncbase	jcn_only_AD	81083442	80976828	.	-	.	gene_id "jcn_only_AD.2187"; transcript_id "jcn_only_AD.2187"; gene_name "CUFF.1082"; flanks "81083442-,80976828^"; structure "1^,2^"; splice_chain "81083442^,81070672^";
chr8	juncbase	jcn_only_AD	81083256	80976828	.	-	.	gene_id "jcn_only_AD.2188"; transcript_id "jcn_only_AD.2188"; gene_name "CUFF.1082"; flanks "81083256-,80976828^"; structure "1^,2^"; splice_chain "81083256^,81070672^";
chr8	juncbase	jcn_only_AD	81130704	80976828	.	-	.	gene_id "jcn_only_AD.2189"; transcript_id "jcn_only_AD.2189"; gene_name "CUFF.1082"; flanks "81130704-,80976828^"; structure "1^,2^"; splice_chain "81130704^,81070672^";
chr8	juncbase	cassette	107726213	107752571	.	+	.	gene_id "cassette.1015"; transcript_id "cassette.1015"; gene_name "CUFF.1094"; flanks "107726213-,107752571^"; structure "0,1-2^"; splice_chain ",107751686-107751811^";
chr8	juncbase	jcn_only_AA	144356972	144358173	.	+	.	gene_id "jcn_only_AA.1637"; transcript_id "jcn_only_AA.1637"; gene_name ""; flanks "144356972-,144358173^"; structure "1-,2-"; splice_chain "144358067-,144358173-";
chr8	juncbase	jcn_only_AA	144356972	144357148	.	+	.	gene_id "jcn_only_AA.1638"; transcript_id "jcn_only_AA.1638"; gene_name ""; flanks "144356972-,144357148^"; structure "1-,2-"; splice_chain "144357148-,144358067-";
chr8	juncbase	jcn_only_AA	144356972	144357365	.	+	.	gene_id "jcn_only_AA.1639"; transcript_id "jcn_only_AA.1639"; gene_name ""; flanks "144356972-,144357365^"; structure "1-,2-"; splice_chain "144357365-,144358067-";
chr8	juncbase	alternative_donor	143915705	143921832	.	+	.	gene_id "alternative_donor.1853"; transcript_id "alternative_donor.1853"; gene_name "CUFF.1111"; flanks "143915705-,143921832^"; structure "1^,2^"; splice_chain "143915705^,143916284^";
chr8	juncbase	intron_retention	80965517	80963863	.	-	.	gene_id "intron_retention.1355"; transcript_id "intron_retention.1355"; gene_name "CUFF.1082"; flanks "80965517-,80963863^"; structure "0,1^2-"; splice_chain ",80965517^80963863-";
chr8	juncbase	jcn_only_AA	2452791	2453716	.	-	.	gene_id "jcn_only_AA.1640"; transcript_id "jcn_only_AA.1640"; gene_name "CUFF.1047"; flanks "2452791-,2453716^"; structure "1-,2-"; splice_chain "2452794-,2452791-";
chr8	juncbase	alternative_acceptor	23186099	23190914	.	-	.	gene_id "alternative_acceptor.1243"; transcript_id "alternative_acceptor.1243"; gene_name "CUFF.1059"; flanks "23186099-,23190914^"; structure "1-,2-"; splice_chain "23189521-,23186099-";
chr8	juncbase	alternative_acceptor	23186078	23190914	.	-	.	gene_id "alternative_acceptor.1244"; transcript_id "alternative_acceptor.1244"; gene_name "CUFF.1059"; flanks "23186078-,23190914^"; structure "1-,2-"; splice_chain "23189521-,23186078-";
chr8	juncbase	intron_retention	99057171	99055003	.	-	.	gene_id "intron_retention.1356"; transcript_id "intron_retention.1356"; gene_name ""; flanks "99057171-,99055003^"; structure "0,1^2-"; splice_chain ",99057171^99055003-";
chr8	juncbase	alternative_donor	17434265	17434645	.	+	.	gene_id "alternative_donor.1854"; transcript_id "alternative_donor.1854"; gene_name "CUFF.1054"; flanks "17434265-,17434645^"; structure "1^,2^"; splice_chain "17434265^,17434269^";