chr19	juncbase	jcn_only_AD	17445920	17448817	.	-	.	gene_id "jcn_only_AD.1"; transcript_id "jcn_only_AD.1"; gene_name "CUFF.1975"; flanks "17445920-,17448817-"; structure "1^,2^"; splice_chain "17445920^,17448473^"; psi "0.057419";
chr19	juncbase	jcn_only_AD	17448385	17448817	.	-	.	gene_id "jcn_only_AD.2"; transcript_id "jcn_only_AD.2"; gene_name "CUFF.1975"; flanks "17448385-,17448817-"; structure "1^,2^"; splice_chain "17448385^,17448473^"; psi "0.305763";
chr19	juncbase	jcn_only_AD	17447843	17448817	.	-	.	gene_id "jcn_only_AD.3"; transcript_id "jcn_only_AD.3"; gene_name "CUFF.1975"; flanks "17447843-,17448817-"; structure "1^,2^"; splice_chain "17447843^,17448473^"; psi "0.418495";
chr19	juncbase	jcn_only_AD	17448456	17448817	.	-	.	gene_id "jcn_only_AD.4"; transcript_id "jcn_only_AD.4"; gene_name "CUFF.1975"; flanks "17448456-,17448817-"; structure "1^,2^"; splice_chain "17448456^,17448473^"; psi "0.039607";
chr19	juncbase	jcn_only_AD	17448078	17448817	.	-	.	gene_id "jcn_only_AD.5"; transcript_id "jcn_only_AD.5"; gene_name "CUFF.1975"; flanks "17448078-,17448817-"; structure "1^,2^"; splice_chain "17448078^,17448473^"; psi "0.289272";
chr19	juncbase	jcn_only_AD	17447966	17448817	.	-	.	gene_id "jcn_only_AD.6"; transcript_id "jcn_only_AD.6"; gene_name "CUFF.1975"; flanks "17447966-,17448817-"; structure "1^,2^"; splice_chain "17447966^,17448473^"; psi "0.023170";
chr6	juncbase	intron_retention	133055619	133055522	.	-	.	gene_id "intron_retention.1"; transcript_id "intron_retention.1"; gene_name "CUFF.1975"; flanks "133055619-,133055522^"; structure "0,1^2-"; splice_chain ",133055619^133055522-"; psi "0.036100";
chr5	juncbase	intron_retention	177631741	177631816	.	-	.	gene_id "intron_retention.2"; transcript_id "intron_retention.2"; gene_name "CUFF.1975"; flanks "177631741-,177631816^"; structure "0,1^2-"; splice_chain ",177631741^177631816-"; psi "0.859400";
chr15	juncbase	jcn_only_AA	45464345	45464200	.	-	.	gene_id "jcn_only_AA.1"; transcript_id "jcn_only_AA.1"; gene_name "CUFF.1975"; flanks "45464345^,45464200^"; structure "1-,2-"; splice_chain "45464276-,45464200-"; psi "0.846600";
chr1	juncbase	jcn_only_AD	53883200	53878940	.	-	.	gene_id "jcn_only_AD.7"; transcript_id "jcn_only_AD.7"; gene_name "CUFF.1975"; flanks "53883200-,53878940-"; structure "1^,2^"; splice_chain "53883200^,53881073^"; psi "0.326800";
chr1	juncbase	jcn_only_AD	247322308	247287173	.	-	.	gene_id "jcn_only_AD.8"; transcript_id "jcn_only_AD.8"; gene_name "CUFF.1975"; flanks "247322308-,247287173-"; structure "1^,2^"; splice_chain "247322308^,247302018^"; psi "0.500000";
chr6	juncbase	jcn_only_AD	5260881	5109725	.	-	.	gene_id "jcn_only_AD.9"; transcript_id "jcn_only_AD.9"; gene_name "CUFF.1975"; flanks "5260881-,5109725-"; structure "1^,2^"; splice_chain "5260881^,5144372^"; psi "0.692793";
chr10	juncbase	cassette	35464633	35477128	.	-	.	gene_id "cassette.1"; transcript_id "cassette.1"; gene_name "CUFF.1975"; flanks "35464633^,35477128-"; structure "0,1-2^"; splice_chain ",35468062-35468204^"; psi "0.728000";
chr11	juncbase	jcn_only_AD	8615630	8474453	.	-	.	gene_id "jcn_only_AD.10"; transcript_id "jcn_only_AD.10"; gene_name "CUFF.1975"; flanks "8615630-,8474453-"; structure "1^,2^"; splice_chain "8615630^,8476291^"; psi "0.100000";
chr6	juncbase	cassette	161455481	161469648	.	-	.	gene_id "cassette.2"; transcript_id "cassette.2"; gene_name "CUFF.1975"; flanks "161455481^,161469648-"; structure "0,1-2^"; splice_chain ",161469278-161469323^"; psi "0.942600";
chr7	juncbase	intron_retention	91718843	91722411	.	-	.	gene_id "intron_retention.3"; transcript_id "intron_retention.3"; gene_name "CUFF.1975"; flanks "91718843-,91722411^"; structure "0,1^2-"; splice_chain ",91718843^91722411-"; psi "0.357100";
chr3	juncbase	cassette	186739792	186756530	.	-	.	gene_id "cassette.3"; transcript_id "cassette.3"; gene_name "CUFF.1975"; flanks "186739792^,186756530-"; structure "0,1-2^"; splice_chain ",186756180-186756279^"; psi "0.971800";
chr15	juncbase	cassette	83698888	83689514	.	-	.	gene_id "cassette.4"; transcript_id "cassette.4"; gene_name "CUFF.1975"; flanks "83698888^,83689514-"; structure "0,1-2^"; splice_chain ",83697480-83697368^"; psi "0.479200";
chrX	juncbase	intron_retention	24382348	24382541	.	-	.	gene_id "intron_retention.4"; transcript_id "intron_retention.4"; gene_name "CUFF.1975"; flanks "24382348-,24382541^"; structure "0,1^2-"; splice_chain ",24382348^24382541-"; psi "0.162600";
chr8	juncbase	intron_retention	103572800	103572989	.	-	.	gene_id "intron_retention.5"; transcript_id "intron_retention.5"; gene_name "CUFF.1975"; flanks "103572800-,103572989^"; structure "0,1^2-"; splice_chain ",103572800^103572989-"; psi "0.176900";
chr15	juncbase	jcn_only_AD	78807449	78819722	.	-	.	gene_id "jcn_only_AD.11"; transcript_id "jcn_only_AD.11"; gene_name "CUFF.1975"; flanks "78807449-,78819722-"; structure "1^,2^"; splice_chain "78807449^,78811115^"; psi "0.908700";
chr17	juncbase	intron_retention	79995507	79995417	.	-	.	gene_id "intron_retention.6"; transcript_id "intron_retention.6"; gene_name "CUFF.1975"; flanks "79995507-,79995417^"; structure "0,1^2-"; splice_chain ",79995507^79995417-"; psi "0.503500";
chr15	juncbase	jcn_only_AD	97326819	97327383	.	-	.	gene_id "jcn_only_AD.12"; transcript_id "jcn_only_AD.12"; gene_name "CUFF.1975"; flanks "97326819-,97327383-"; structure "1^,2^"; splice_chain "97326819^,97326974^"; psi "0.810572";
chr1	juncbase	jcn_only_AD	2106752	2116022	.	-	.	gene_id "jcn_only_AD.13"; transcript_id "jcn_only_AD.13"; gene_name "CUFF.1975"; flanks "2106752-,2116022-"; structure "1^,2^"; splice_chain "2106752^,2113353^"; psi "0.893900";
chr16	juncbase	jcn_only_AD	4466460	4463405	.	-	.	gene_id "jcn_only_AD.14"; transcript_id "jcn_only_AD.14"; gene_name "CUFF.1975"; flanks "4466460-,4463405-"; structure "1^,2^"; splice_chain "4466460^,4465767^"; psi "0.963232";
chr16	juncbase	jcn_only_AD	4466786	4463405	.	-	.	gene_id "jcn_only_AD.15"; transcript_id "jcn_only_AD.15"; gene_name "CUFF.1975"; flanks "4466786-,4463405-"; structure "1^,2^"; splice_chain "4466786^,4465767^"; psi "0.366279";
chr17	juncbase	intron_retention	26554519	26554634	.	-	.	gene_id "intron_retention.7"; transcript_id "intron_retention.7"; gene_name "CUFF.1975"; flanks "26554519-,26554634^"; structure "0,1^2-"; splice_chain ",26554519^26554634-"; psi "0.391900";
chr12	juncbase	jcn_only_AA	49351093	49335360	.	-	.	gene_id "jcn_only_AA.2"; transcript_id "jcn_only_AA.2"; gene_name "CUFF.1975"; flanks "49351093^,49335360^"; structure "1-,2-"; splice_chain "49349980-,49335360-"; psi "0.042271";
chr12	juncbase	jcn_only_AA	49351093	49332630	.	-	.	gene_id "jcn_only_AA.3"; transcript_id "jcn_only_AA.3"; gene_name "CUFF.1975"; flanks "49351093^,49332630^"; structure "1-,2-"; splice_chain "49349980-,49332630-"; psi "0.074786";
chr2	juncbase	intron_retention	110922265	110920709	.	-	.	gene_id "intron_retention.8"; transcript_id "intron_retention.8"; gene_name "CUFF.1975"; flanks "110922265-,110920709^"; structure "0,1^2-"; splice_chain ",110922265^110920709-"; psi "0.083000";
chr5	juncbase	jcn_only_AA	139876863	139884406	.	-	.	gene_id "jcn_only_AA.4"; transcript_id "jcn_only_AA.4"; gene_name "CUFF.1975"; flanks "139876863^,139884406^"; structure "1-,2-"; splice_chain "139877623-,139884406-"; psi "0.352900";
chr5	juncbase	jcn_only_AD	64887699	64887329	.	-	.	gene_id "jcn_only_AD.16"; transcript_id "jcn_only_AD.16"; gene_name "CUFF.1975"; flanks "64887699-,64887329-"; structure "1^,2^"; splice_chain "64887699^,64887670^"; psi "0.500000";
chr11	juncbase	intron_retention	65484453	65486061	.	-	.	gene_id "intron_retention.9"; transcript_id "intron_retention.9"; gene_name "CUFF.1975"; flanks "65484453-,65486061^"; structure "0,1^2-"; splice_chain ",65484453^65486061-"; psi "0.035200";
chr17	juncbase	jcn_only_AA	25967799	25969264	.	-	.	gene_id "jcn_only_AA.5"; transcript_id "jcn_only_AA.5"; gene_name "CUFF.1975"; flanks "25967799^,25969264^"; structure "1-,2-"; splice_chain "25967991-,25969264-"; psi "0.936000";
chr17	juncbase	jcn_only_AA	6348724	6350783	.	-	.	gene_id "jcn_only_AA.6"; transcript_id "jcn_only_AA.6"; gene_name "CUFF.1975"; flanks "6348724^,6350783^"; structure "1-,2-"; splice_chain "6349415-,6350783-"; psi "0.928700";
chr14	juncbase	intron_retention	24563463	24563975	.	-	.	gene_id "intron_retention.10"; transcript_id "intron_retention.10"; gene_name "CUFF.1975"; flanks "24563463-,24563975^"; structure "0,1^2-"; splice_chain ",24563463^24563975-"; psi "0.686000";
chr17	juncbase	jcn_only_AA	79254409	79250933	.	-	.	gene_id "jcn_only_AA.7"; transcript_id "jcn_only_AA.7"; gene_name "CUFF.1975"; flanks "79254409^,79250933^"; structure "1-,2-"; splice_chain "79253960-,79250933-"; psi "0.666700";
chr9	juncbase	jcn_only_AD	43885072	43890296	.	-	.	gene_id "jcn_only_AD.17"; transcript_id "jcn_only_AD.17"; gene_name "CUFF.1975"; flanks "43885072-,43890296-"; structure "1^,2^"; splice_chain "43885072^,43887733^"; psi "0.200800";
chr3	juncbase	intron_retention	141713862	141712427	.	-	.	gene_id "intron_retention.11"; transcript_id "intron_retention.11"; gene_name "CUFF.1975"; flanks "141713862-,141712427^"; structure "0,1^2-"; splice_chain ",141713862^141712427-"; psi "0.104100";
chr1	juncbase	jcn_only_AD	200870287	200876962	.	-	.	gene_id "jcn_only_AD.18"; transcript_id "jcn_only_AD.18"; gene_name "CUFF.1975"; flanks "200870287-,200876962-"; structure "1^,2^"; splice_chain "200870287^,200875623^"; psi "0.613800";
chr19	juncbase	jcn_only_AD	50285226	50296293	.	-	.	gene_id "jcn_only_AD.19"; transcript_id "jcn_only_AD.19"; gene_name "CUFF.1975"; flanks "50285226-,50296293-"; structure "1^,2^"; splice_chain "50285226^,50285227^"; psi "0.002100";
chr11	juncbase	cassette	77899619	77885629	.	-	.	gene_id "cassette.5"; transcript_id "cassette.5"; gene_name "CUFF.1975"; flanks "77899619^,77885629-"; structure "0,1-2^"; splice_chain ",77889031-77888785^"; psi "0.890900";
chr16	juncbase	jcn_only_AD	3115688	3115785	.	-	.	gene_id "jcn_only_AD.20"; transcript_id "jcn_only_AD.20"; gene_name "CUFF.1975"; flanks "3115688-,3115785-"; structure "1^,2^"; splice_chain "3115688^,3115711^"; psi "0.871412";
chr16	juncbase	jcn_only_AD	3115495	3115785	.	-	.	gene_id "jcn_only_AD.21"; transcript_id "jcn_only_AD.21"; gene_name "CUFF.1975"; flanks "3115495-,3115785-"; structure "1^,2^"; splice_chain "3115495^,3115711^"; psi "0.889400";
chr16	juncbase	jcn_only_AD	3115656	3115785	.	-	.	gene_id "jcn_only_AD.22"; transcript_id "jcn_only_AD.22"; gene_name "CUFF.1975"; flanks "3115656-,3115785-"; structure "1^,2^"; splice_chain "3115656^,3115711^"; psi "0.858514";
chr9	juncbase	jcn_only_AD	131002275	131004511	.	-	.	gene_id "jcn_only_AD.23"; transcript_id "jcn_only_AD.23"; gene_name "CUFF.1975"; flanks "131002275-,131004511-"; structure "1^,2^"; splice_chain "131002275^,131003326^"; psi "0.842200";
chr7	juncbase	cassette	38836345	38835211	.	-	.	gene_id "cassette.6"; transcript_id "cassette.6"; gene_name "CUFF.1975"; flanks "38836345^,38835211-"; structure "0,1-2^"; splice_chain ",38836126-38836015^"; psi "0.672100";
chr9	juncbase	intron_retention	130953104	130952635	.	-	.	gene_id "intron_retention.12"; transcript_id "intron_retention.12"; gene_name "CUFF.1975"; flanks "130953104-,130952635^"; structure "0,1^2-"; splice_chain ",130953104^130952635-"; psi "0.828300";
chr5	juncbase	intron_retention	178030845	178030758	.	-	.	gene_id "intron_retention.13"; transcript_id "intron_retention.13"; gene_name "CUFF.1975"; flanks "178030845-,178030758^"; structure "0,1^2-"; splice_chain ",178030845^178030758-"; psi "0.457300";
chr10	juncbase	jcn_only_AA	73887840	73857208	.	-	.	gene_id "jcn_only_AA.8"; transcript_id "jcn_only_AA.8"; gene_name "CUFF.1975"; flanks "73887840^,73857208^"; structure "1-,2-"; splice_chain "73862170-,73857208-"; psi "0.726165";
chr11	juncbase	cassette	77888785	77885629	.	-	.	gene_id "cassette.7"; transcript_id "cassette.7"; gene_name "CUFF.1975"; flanks "77888785^,77885629-"; structure "0,1-2^"; splice_chain ",77888031-77887934^"; psi "0.372900";
chr12	juncbase	intron_retention	13366755	13367505	.	-	.	gene_id "intron_retention.14"; transcript_id "intron_retention.14"; gene_name "CUFF.1975"; flanks "13366755-,13367505^"; structure "0,1^2-"; splice_chain ",13366755^13367505-"; psi "0.298900";
chr4	juncbase	intron_retention	152065372	152065202	.	-	.	gene_id "intron_retention.15"; transcript_id "intron_retention.15"; gene_name "CUFF.1975"; flanks "152065372-,152065202^"; structure "0,1^2-"; splice_chain ",152065372^152065202-"; psi "0.463800";
chr10	juncbase	intron_retention	73975965	73975612	.	-	.	gene_id "intron_retention.16"; transcript_id "intron_retention.16"; gene_name "CUFF.1975"; flanks "73975965-,73975612^"; structure "0,1^2-"; splice_chain ",73975965^73975612-"; psi "0.608700";
chr18	juncbase	jcn_only_AA	67614597	67614006	.	-	.	gene_id "jcn_only_AA.9"; transcript_id "jcn_only_AA.9"; gene_name "CUFF.1975"; flanks "67614597^,67614006^"; structure "1-,2-"; splice_chain "67614305-,67614006-"; psi "0.085800";
chr19	juncbase	intron_retention	4311876	4323569	.	-	.	gene_id "intron_retention.17"; transcript_id "intron_retention.17"; gene_name "CUFF.1975"; flanks "4311876-,4323569^"; structure "0,1^2-"; splice_chain ",4311876^4323569-"; psi "0.828600";
chr1	juncbase	jcn_only_AA	247335150	247323115	.	-	.	gene_id "jcn_only_AA.10"; transcript_id "jcn_only_AA.10"; gene_name "CUFF.1975"; flanks "247335150^,247323115^"; structure "1-,2-"; splice_chain "247323169-,247323115-"; psi "0.676500";
chr14	juncbase	intron_retention	104204031	104202539	.	-	.	gene_id "intron_retention.18"; transcript_id "intron_retention.18"; gene_name "CUFF.1975"; flanks "104204031-,104202539^"; structure "0,1^2-"; splice_chain ",104204031^104202539-"; psi "0.041900";
chr12	juncbase	intron_retention	56709605	56708750	.	-	.	gene_id "intron_retention.19"; transcript_id "intron_retention.19"; gene_name "CUFF.1975"; flanks "56709605-,56708750^"; structure "0,1^2-"; splice_chain ",56709605^56708750-"; psi "0.561400";
chr6	juncbase	cassette	90276815	90312748	.	-	.	gene_id "cassette.8"; transcript_id "cassette.8"; gene_name "CUFF.1975"; flanks "90276815^,90312748-"; structure "0,1-2^"; splice_chain ",90305635-90305733^"; psi "0.857500";
chr22	juncbase	jcn_only_AD	51016978	51016363	.	-	.	gene_id "jcn_only_AD.24"; transcript_id "jcn_only_AD.24"; gene_name "CUFF.1975"; flanks "51016978-,51016363-"; structure "1^,2^"; splice_chain "51016978^,51016513^"; psi "0.860082";
chr22	juncbase	jcn_only_AD	51016815	51016363	.	-	.	gene_id "jcn_only_AD.25"; transcript_id "jcn_only_AD.25"; gene_name "CUFF.1975"; flanks "51016815-,51016363-"; structure "1^,2^"; splice_chain "51016815^,51016513^"; psi "0.846796";
chr15	juncbase	cassette	47687758	47652294	.	-	.	gene_id "cassette.9"; transcript_id "cassette.9"; gene_name "CUFF.1975"; flanks "47687758^,47652294-"; structure "0,1-2^"; splice_chain ",47672792-47672654^"; psi "0.705900";
chr2	juncbase	intron_retention	3469479	3482617	.	-	.	gene_id "intron_retention.20"; transcript_id "intron_retention.20"; gene_name "CUFF.1975"; flanks "3469479-,3482617^"; structure "0,1^2-"; splice_chain ",3469479^3482617-"; psi "0.356300";
chr16	juncbase	cassette	67220924	67220560	.	-	.	gene_id "cassette.10"; transcript_id "cassette.10"; gene_name "CUFF.1975"; flanks "67220924^,67220560-"; structure "0,1-2^"; splice_chain ",67220787-67220662^"; psi "0.313300";
chr7	juncbase	jcn_only_AD	102603980	102572380	.	-	.	gene_id "jcn_only_AD.26"; transcript_id "jcn_only_AD.26"; gene_name "CUFF.1975"; flanks "102603980-,102572380-"; structure "1^,2^"; splice_chain "102603980^,102573768^"; psi "0.855300";
chr3	juncbase	intron_retention	27353590	27352507	.	-	.	gene_id "intron_retention.21"; transcript_id "intron_retention.21"; gene_name "CUFF.1975"; flanks "27353590-,27352507^"; structure "0,1^2-"; splice_chain ",27353590^27352507-"; psi "0.762700";
chr7	juncbase	cassette	86688641	86577238	.	-	.	gene_id "cassette.11"; transcript_id "cassette.11"; gene_name "CUFF.1975"; flanks "86688641^,86577238-"; structure "0,1-2^"; splice_chain ",86594340-86594220^"; psi "0.965800";
chr16	juncbase	intron_retention	23505620	23504779	.	-	.	gene_id "intron_retention.22"; transcript_id "intron_retention.22"; gene_name "CUFF.1975"; flanks "23505620-,23504779^"; structure "0,1^2-"; splice_chain ",23505620^23504779-"; psi "0.563300";
chr15	juncbase	jcn_only_AD	74771619	74773392	.	-	.	gene_id "jcn_only_AD.27"; transcript_id "jcn_only_AD.27"; gene_name "CUFF.1975"; flanks "74771619-,74773392-"; structure "1^,2^"; splice_chain "74771619^,74773255^"; psi "0.827900";
chr5	juncbase	cassette	127412639	127302620	.	-	.	gene_id "cassette.12"; transcript_id "cassette.12"; gene_name "CUFF.1975"; flanks "127412639^,127302620-"; structure "0,1-2^"; splice_chain ",127396936-127396836^"; psi "0.789900";
chr14	juncbase	jcn_only_AD	75179636	75152363	.	-	.	gene_id "jcn_only_AD.28"; transcript_id "jcn_only_AD.28"; gene_name "CUFF.1975"; flanks "75179636-,75152363-"; structure "1^,2^"; splice_chain "75179636^,75158744^"; psi "0.197400";
chr6	juncbase	jcn_only_AA	2988265	2989762	.	-	.	gene_id "jcn_only_AA.11"; transcript_id "jcn_only_AA.11"; gene_name "CUFF.1975"; flanks "2988265^,2989762^"; structure "1-,2-"; splice_chain "2988662-,2989762-"; psi "0.957100";
chr17	juncbase	cassette	61562733	61563918	.	-	.	gene_id "cassette.13"; transcript_id "cassette.13"; gene_name "CUFF.1975"; flanks "61562733^,61563918-"; structure "0,1-2^"; splice_chain ",61563720-61563732^"; psi "0.298300";
chr2	juncbase	jcn_only_AA	166737189	166732742	.	-	.	gene_id "jcn_only_AA.12"; transcript_id "jcn_only_AA.12"; gene_name "CUFF.1975"; flanks "166737189^,166732742^"; structure "1-,2-"; splice_chain "166736477-,166732742-"; psi "0.659600";
chr2	juncbase	jcn_only_AD	101549463	101554215	.	-	.	gene_id "jcn_only_AD.29"; transcript_id "jcn_only_AD.29"; gene_name "CUFF.1975"; flanks "101549463-,101554215-"; structure "1^,2^"; splice_chain "101549463^,101550622^"; psi "0.993800";
chr5	juncbase	jcn_only_AA	56510020	56526673	.	-	.	gene_id "jcn_only_AA.13"; transcript_id "jcn_only_AA.13"; gene_name "CUFF.1975"; flanks "56510020^,56526673^"; structure "1-,2-"; splice_chain "56517203-,56526673-"; psi "0.482100";
chr17	juncbase	jcn_only_AD	61904874	61905479	.	-	.	gene_id "jcn_only_AD.30"; transcript_id "jcn_only_AD.30"; gene_name "CUFF.1975"; flanks "61904874-,61905479-"; structure "1^,2^"; splice_chain "61904874^,61905283^"; psi "0.626400";
chr8	juncbase	jcn_only_AA	17491722	17501080	.	-	.	gene_id "jcn_only_AA.14"; transcript_id "jcn_only_AA.14"; gene_name "CUFF.1975"; flanks "17491722^,17501080^"; structure "1-,2-"; splice_chain "17500122-,17501080-"; psi "0.144300";
chr20	juncbase	cassette	61987327	61982379	.	-	.	gene_id "cassette.14"; transcript_id "cassette.14"; gene_name "CUFF.1975"; flanks "61987327^,61982379-"; structure "0,1-2^"; splice_chain ",61986947-61986848^"; psi "0.977500";
chr12	juncbase	cassette	69207408	69233054	.	-	.	gene_id "cassette.15"; transcript_id "cassette.15"; gene_name "CUFF.1975"; flanks "69207408^,69233054-"; structure "0,1-2^"; splice_chain ",69222551-69222711^"; psi "0.279600";
chr12	juncbase	cassette	69214154	69233054	.	-	.	gene_id "cassette.16"; transcript_id "cassette.16"; gene_name "CUFF.1975"; flanks "69214154^,69233054-"; structure "0,1-2^"; splice_chain ",69222551-69222711^"; psi "0.279600";
chr12	juncbase	cassette	69207408	69229609	.	-	.	gene_id "cassette.17"; transcript_id "cassette.17"; gene_name "CUFF.1975"; flanks "69207408^,69229609-"; structure "0,1-2^"; splice_chain ",69222551-69222711^"; psi "0.279600";
chr12	juncbase	cassette	69218431	69233054	.	-	.	gene_id "cassette.18"; transcript_id "cassette.18"; gene_name "CUFF.1975"; flanks "69218431^,69233054-"; structure "0,1-2^"; splice_chain ",69222551-69222711^"; psi "0.279600";
chr12	juncbase	cassette	69218431	69229609	.	-	.	gene_id "cassette.19"; transcript_id "cassette.19"; gene_name "CUFF.1975"; flanks "69218431^,69229609-"; structure "0,1-2^"; splice_chain ",69222551-69222711^"; psi "0.279600";
chr15	juncbase	jcn_only_AD	57490023	57523350	.	-	.	gene_id "jcn_only_AD.31"; transcript_id "jcn_only_AD.31"; gene_name "CUFF.1975"; flanks "57490023-,57523350-"; structure "1^,2^"; splice_chain "57490023^,57511788^"; psi "0.617529";
chr15	juncbase	jcn_only_AD	57506594	57523350	.	-	.	gene_id "jcn_only_AD.32"; transcript_id "jcn_only_AD.32"; gene_name "CUFF.1975"; flanks "57506594-,57523350-"; structure "1^,2^"; splice_chain "57506594^,57511788^"; psi "0.232319";
chr16	juncbase	jcn_only_AA	89789591	89789687	.	-	.	gene_id "jcn_only_AA.15"; transcript_id "jcn_only_AA.15"; gene_name "CUFF.1975"; flanks "89789591^,89789687^"; structure "1-,2-"; splice_chain "89789668-,89789687-"; psi "0.200000";
chr2	juncbase	jcn_only_AD	61765627	61761038	.	-	.	gene_id "jcn_only_AD.33"; transcript_id "jcn_only_AD.33"; gene_name "CUFF.1975"; flanks "61765627-,61761038-"; structure "1^,2^"; splice_chain "61765627^,61764697^"; psi "0.247317";
chr4	juncbase	cassette	6081899	6066735	.	-	.	gene_id "cassette.20"; transcript_id "cassette.20"; gene_name "CUFF.1975"; flanks "6081899^,6066735-"; structure "0,1-2^"; splice_chain ",6080725-6080666^"; psi "0.922700";
chr15	juncbase	jcn_only_AD	24780953	24811803	.	-	.	gene_id "jcn_only_AD.34"; transcript_id "jcn_only_AD.34"; gene_name "CUFF.1975"; flanks "24780953-,24811803-"; structure "1^,2^"; splice_chain "24780953^,24803468^"; psi "0.285754";
chr17	juncbase	intron_retention	56083162	56082961	.	-	.	gene_id "intron_retention.23"; transcript_id "intron_retention.23"; gene_name "CUFF.1975"; flanks "56083162-,56082961^"; structure "0,1^2-"; splice_chain ",56083162^56082961-"; psi "0.253500";
chr7	juncbase	jcn_only_AA	73106976	73277203	.	-	.	gene_id "jcn_only_AA.16"; transcript_id "jcn_only_AA.16"; gene_name "CUFF.1975"; flanks "73106976^,73277203^"; structure "1-,2-"; splice_chain "73111935-,73277203-"; psi "0.007167";
chr17	juncbase	jcn_only_AA	79263491	79258695	.	-	.	gene_id "jcn_only_AA.17"; transcript_id "jcn_only_AA.17"; gene_name "CUFF.1975"; flanks "79263491^,79258695^"; structure "1-,2-"; splice_chain "79262745-,79258695-"; psi "0.381700";
chr17	juncbase	intron_retention	5487613	5487279	.	-	.	gene_id "intron_retention.24"; transcript_id "intron_retention.24"; gene_name "CUFF.1975"; flanks "5487613-,5487279^"; structure "0,1^2-"; splice_chain ",5487613^5487279-"; psi "0.989600";
chr17	juncbase	jcn_only_AD	61904883	61907493	.	-	.	gene_id "jcn_only_AD.35"; transcript_id "jcn_only_AD.35"; gene_name "CUFF.1975"; flanks "61904883-,61907493-"; structure "1^,2^"; splice_chain "61904883^,61907309^"; psi "0.051400";
chr1	juncbase	cassette	224378021	224380034	.	-	.	gene_id "cassette.21"; transcript_id "cassette.21"; gene_name "CUFF.1975"; flanks "224378021^,224380034-"; structure "0,1-2^"; splice_chain ",224378794-224378858^"; psi "0.150900";
chr7	juncbase	cassette	117396609	117385984	.	-	.	gene_id "cassette.22"; transcript_id "cassette.22"; gene_name "CUFF.1975"; flanks "117396609^,117385984-"; structure "0,1-2^"; splice_chain ",117386153-117386067^"; psi "0.395800";
chr4	juncbase	cassette	3952866	3949947	.	-	.	gene_id "cassette.23"; transcript_id "cassette.23"; gene_name "CUFF.1975"; flanks "3952866^,3949947-"; structure "0,1-2^"; splice_chain ",3951319-3951175^"; psi "0.555600";
chr19	juncbase	jcn_only_AA	1438891	1440018	.	-	.	gene_id "jcn_only_AA.18"; transcript_id "jcn_only_AA.18"; gene_name "CUFF.1975"; flanks "1438891^,1440018^"; structure "1-,2-"; splice_chain "1439967-,1440018-"; psi "0.839375";
chr19	juncbase	jcn_only_AA	1438891	1440025	.	-	.	gene_id "jcn_only_AA.19"; transcript_id "jcn_only_AA.19"; gene_name "CUFF.1975"; flanks "1438891^,1440025^"; structure "1-,2-"; splice_chain "1439967-,1440025-"; psi "0.198266";
chr8	juncbase	cassette	38003481	38001904	.	-	.	gene_id "cassette.24"; transcript_id "cassette.24"; gene_name "CUFF.1975"; flanks "38003481^,38001904-"; structure "0,1-2^"; splice_chain ",38002833-38002740^"; psi "0.131000";
chr11	juncbase	cassette	63670630	63672258	.	-	.	gene_id "cassette.25"; transcript_id "cassette.25"; gene_name "CUFF.1975"; flanks "63670630^,63672258-"; structure "0,1-2^"; splice_chain ",63671458-63671619^"; psi "0.664700";
chr11	juncbase	jcn_only_AD	118927786	118927129	.	-	.	gene_id "jcn_only_AD.36"; transcript_id "jcn_only_AD.36"; gene_name "CUFF.1975"; flanks "118927786-,118927129-"; structure "1^,2^"; splice_chain "118927786^,118927731^"; psi "0.986100";
chr11	juncbase	jcn_only_AD	117070545	117073718	.	-	.	gene_id "jcn_only_AD.37"; transcript_id "jcn_only_AD.37"; gene_name "CUFF.1975"; flanks "117070545-,117073718-"; structure "1^,2^"; splice_chain "117070545^,117072657^"; psi "0.906587";
chr11	juncbase	jcn_only_AD	117071058	117073718	.	-	.	gene_id "jcn_only_AD.38"; transcript_id "jcn_only_AD.38"; gene_name "CUFF.1975"; flanks "117071058-,117073718-"; structure "1^,2^"; splice_chain "117071058^,117072657^"; psi "0.629406";
chr11	juncbase	jcn_only_AD	117070148	117073718	.	-	.	gene_id "jcn_only_AD.39"; transcript_id "jcn_only_AD.39"; gene_name "CUFF.1975"; flanks "117070148-,117073718-"; structure "1^,2^"; splice_chain "117070148^,117072657^"; psi "0.551493";
chr12	juncbase	intron_retention	54758177	54757643	.	-	.	gene_id "intron_retention.25"; transcript_id "intron_retention.25"; gene_name "CUFF.1975"; flanks "54758177-,54757643^"; structure "0,1^2-"; splice_chain ",54758177^54757643-"; psi "0.305900";
chr2	juncbase	jcn_only_AA	220095072	220096982	.	-	.	gene_id "jcn_only_AA.20"; transcript_id "jcn_only_AA.20"; gene_name "CUFF.1975"; flanks "220095072^,220096982^"; structure "1-,2-"; splice_chain "220096650-,220096982-"; psi "0.384600";
chr2	juncbase	intron_retention	27707094	27706804	.	-	.	gene_id "intron_retention.26"; transcript_id "intron_retention.26"; gene_name "CUFF.1975"; flanks "27707094-,27706804^"; structure "0,1^2-"; splice_chain ",27707094^27706804-"; psi "0.033500";
chr19	juncbase	intron_retention	49314241	49310331	.	-	.	gene_id "intron_retention.27"; transcript_id "intron_retention.27"; gene_name "CUFF.1975"; flanks "49314241-,49310331^"; structure "0,1^2-"; splice_chain ",49314241^49310331-"; psi "0.531700";
chr17	juncbase	jcn_only_AA	61574346	61584417	.	-	.	gene_id "jcn_only_AA.21"; transcript_id "jcn_only_AA.21"; gene_name "CUFF.1975"; flanks "61574346^,61584417^"; structure "1-,2-"; splice_chain "61574498-,61584417-"; psi "0.018100";
chr7	juncbase	jcn_only_AA	107207631	107211590	.	-	.	gene_id "jcn_only_AA.22"; transcript_id "jcn_only_AA.22"; gene_name "CUFF.1975"; flanks "107207631^,107211590^"; structure "1-,2-"; splice_chain "107208200-,107211590-"; psi "0.990900";
chr19	juncbase	intron_retention	40486361	40486569	.	-	.	gene_id "intron_retention.28"; transcript_id "intron_retention.28"; gene_name "CUFF.1975"; flanks "40486361-,40486569^"; structure "0,1^2-"; splice_chain ",40486361^40486569-"; psi "0.144800";
chr7	juncbase	jcn_only_AD	73101425	73277203	.	-	.	gene_id "jcn_only_AD.40"; transcript_id "jcn_only_AD.40"; gene_name "CUFF.1975"; flanks "73101425-,73277203-"; structure "1^,2^"; splice_chain "73101425^,73106976^"; psi "0.750000";
chr1	juncbase	intron_retention	22963195	22964103	.	-	.	gene_id "intron_retention.29"; transcript_id "intron_retention.29"; gene_name "CUFF.1975"; flanks "22963195-,22964103^"; structure "0,1^2-"; splice_chain ",22963195^22964103-"; psi "0.123600";
chr10	juncbase	cassette	532399	518489	.	-	.	gene_id "cassette.26"; transcript_id "cassette.26"; gene_name "CUFF.1975"; flanks "532399^,518489-"; structure "0,1-2^"; splice_chain ",530888-530721^"; psi "0.968800";
chr2	juncbase	cassette	109066145	109068855	.	-	.	gene_id "cassette.27"; transcript_id "cassette.27"; gene_name "CUFF.1975"; flanks "109066145^,109068855-"; structure "0,1-2^"; splice_chain ",109067484-109067568^"; psi "0.298200";
chr4	juncbase	jcn_only_AD	77189921	77192721	.	-	.	gene_id "jcn_only_AD.41"; transcript_id "jcn_only_AD.41"; gene_name "CUFF.1975"; flanks "77189921-,77192721-"; structure "1^,2^"; splice_chain "77189921^,77189966^"; psi "0.084700";
chr12	juncbase	cassette	69203072	69229609	.	-	.	gene_id "cassette.28"; transcript_id "cassette.28"; gene_name "CUFF.1975"; flanks "69203072^,69229609-"; structure "0,1-2^"; splice_chain ",69207334-69207408^"; psi "0.550000";
chr12	juncbase	cassette	69203072	69214105	.	-	.	gene_id "cassette.29"; transcript_id "cassette.29"; gene_name "CUFF.1975"; flanks "69203072^,69214105-"; structure "0,1-2^"; splice_chain ",69207334-69207408^"; psi "0.550000";
chr12	juncbase	cassette	69203072	69210592	.	-	.	gene_id "cassette.30"; transcript_id "cassette.30"; gene_name "CUFF.1975"; flanks "69203072^,69210592-"; structure "0,1-2^"; splice_chain ",69207334-69207408^"; psi "0.550000";
chr12	juncbase	cassette	69203072	69233054	.	-	.	gene_id "cassette.31"; transcript_id "cassette.31"; gene_name "CUFF.1975"; flanks "69203072^,69233054-"; structure "0,1-2^"; splice_chain ",69207334-69207408^"; psi "0.550000";
chr12	juncbase	cassette	69203072	69218143	.	-	.	gene_id "cassette.32"; transcript_id "cassette.32"; gene_name "CUFF.1975"; flanks "69203072^,69218143-"; structure "0,1-2^"; splice_chain ",69207334-69207408^"; psi "0.550000";
chr4	juncbase	cassette	2933552	2933192	.	-	.	gene_id "cassette.33"; transcript_id "cassette.33"; gene_name "CUFF.1975"; flanks "2933552^,2933192-"; structure "0,1-2^"; splice_chain ",2933390-2933282^"; psi "0.609600";
chr2	juncbase	jcn_only_AD	4021135	4009484	.	-	.	gene_id "jcn_only_AD.42"; transcript_id "jcn_only_AD.42"; gene_name "CUFF.1975"; flanks "4021135-,4009484-"; structure "1^,2^"; splice_chain "4021135^,4015769^"; psi "0.540900";
chr20	juncbase	intron_retention	30135409	30136480	.	-	.	gene_id "intron_retention.30"; transcript_id "intron_retention.30"; gene_name "CUFF.1975"; flanks "30135409-,30136480^"; structure "0,1^2-"; splice_chain ",30135409^30136480-"; psi "0.838900";
chr15	juncbase	cassette	90431753	90414778	.	-	.	gene_id "cassette.34"; transcript_id "cassette.34"; gene_name "CUFF.1975"; flanks "90431753^,90414778-"; structure "0,1-2^"; splice_chain ",90420656-90420538^"; psi "0.477800";
chr15	juncbase	cassette	90421497	90414778	.	-	.	gene_id "cassette.35"; transcript_id "cassette.35"; gene_name "CUFF.1975"; flanks "90421497^,90414778-"; structure "0,1-2^"; splice_chain ",90420656-90420538^"; psi "0.477800";
chr7	juncbase	cassette	128848692	128850204	.	-	.	gene_id "cassette.36"; transcript_id "cassette.36"; gene_name "CUFF.1975"; flanks "128848692^,128850204-"; structure "0,1-2^"; splice_chain ",128849130-128849238^"; psi "0.297300";
chr8	juncbase	cassette	75263701	75274119	.	-	.	gene_id "cassette.37"; transcript_id "cassette.37"; gene_name "CUFF.1975"; flanks "75263701^,75274119-"; structure "0,1-2^"; splice_chain ",75272372-75272545^"; psi "0.730900";
chr5	juncbase	cassette	139866645	139884406	.	-	.	gene_id "cassette.38"; transcript_id "cassette.38"; gene_name "CUFF.1975"; flanks "139866645^,139884406-"; structure "0,1-2^"; splice_chain ",139876105-139876863^"; psi "0.711100";
chr3	juncbase	jcn_only_AD	57583366	57582950	.	-	.	gene_id "jcn_only_AD.43"; transcript_id "jcn_only_AD.43"; gene_name "CUFF.1975"; flanks "57583366-,57582950-"; structure "1^,2^"; splice_chain "57583366^,57583059^"; psi "0.608700";
chr3	juncbase	intron_retention	127294592	127294348	.	-	.	gene_id "intron_retention.31"; transcript_id "intron_retention.31"; gene_name "CUFF.1975"; flanks "127294592-,127294348^"; structure "0,1^2-"; splice_chain ",127294592^127294348-"; psi "0.275300";
chr15	juncbase	intron_retention	64444049	64444837	.	-	.	gene_id "intron_retention.32"; transcript_id "intron_retention.32"; gene_name "CUFF.1975"; flanks "64444049-,64444837^"; structure "0,1^2-"; splice_chain ",64444049^64444837-"; psi "0.864900";
chr2	juncbase	intron_retention	27693795	27688749	.	-	.	gene_id "intron_retention.33"; transcript_id "intron_retention.33"; gene_name "CUFF.1975"; flanks "27693795-,27688749^"; structure "0,1^2-"; splice_chain ",27693795^27688749-"; psi "0.975100";
chr22	juncbase	intron_retention	37707568	37708061	.	-	.	gene_id "intron_retention.34"; transcript_id "intron_retention.34"; gene_name "CUFF.1975"; flanks "37707568-,37708061^"; structure "0,1^2-"; splice_chain ",37707568^37708061-"; psi "0.296300";
chr15	juncbase	jcn_only_AD	57384089	57458600	.	-	.	gene_id "jcn_only_AD.44"; transcript_id "jcn_only_AD.44"; gene_name "CUFF.1975"; flanks "57384089-,57458600-"; structure "1^,2^"; splice_chain "57384089^,57422170^"; psi "0.076829";
chr15	juncbase	jcn_only_AD	57401515	57458600	.	-	.	gene_id "jcn_only_AD.45"; transcript_id "jcn_only_AD.45"; gene_name "CUFF.1975"; flanks "57401515-,57458600-"; structure "1^,2^"; splice_chain "57401515^,57422170^"; psi "0.101768";
chr18	juncbase	jcn_only_AD	61323210	61377413	.	-	.	gene_id "jcn_only_AD.46"; transcript_id "jcn_only_AD.46"; gene_name "CUFF.1975"; flanks "61323210-,61377413-"; structure "1^,2^"; splice_chain "61323210^,61370240^"; psi "0.059600";
chr14	juncbase	cassette	83117340	83153658	.	-	.	gene_id "cassette.39"; transcript_id "cassette.39"; gene_name "CUFF.1975"; flanks "83117340^,83153658-"; structure "0,1-2^"; splice_chain ",83151724-83151775^"; psi "0.951200";
chr19	juncbase	jcn_only_AD	17445920	17448817	.	-	.	gene_id "jcn_only_AD.47"; transcript_id "jcn_only_AD.47"; gene_name "CUFF.1975"; flanks "17445920-,17448817-"; structure "1^,2^"; splice_chain "17445920^,17448385^"; psi "0.121505";
chr19	juncbase	jcn_only_AD	17447843	17448817	.	-	.	gene_id "jcn_only_AD.48"; transcript_id "jcn_only_AD.48"; gene_name "CUFF.1975"; flanks "17447843-,17448817-"; structure "1^,2^"; splice_chain "17447843^,17448385^"; psi "0.620353";
chr19	juncbase	jcn_only_AD	17448078	17448817	.	-	.	gene_id "jcn_only_AD.49"; transcript_id "jcn_only_AD.49"; gene_name "CUFF.1975"; flanks "17448078-,17448817-"; structure "1^,2^"; splice_chain "17448078^,17448385^"; psi "0.480280";
chr19	juncbase	jcn_only_AD	17447966	17448817	.	-	.	gene_id "jcn_only_AD.50"; transcript_id "jcn_only_AD.50"; gene_name "CUFF.1975"; flanks "17447966-,17448817-"; structure "1^,2^"; splice_chain "17447966^,17448385^"; psi "0.051103";
chr19	juncbase	intron_retention	49311013	49310331	.	-	.	gene_id "intron_retention.35"; transcript_id "intron_retention.35"; gene_name "CUFF.1975"; flanks "49311013-,49310331^"; structure "0,1^2-"; splice_chain ",49311013^49310331-"; psi "0.531000";
chr1	juncbase	cassette	207287630	207288761	.	-	.	gene_id "cassette.40"; transcript_id "cassette.40"; gene_name "CUFF.1975"; flanks "207287630^,207288761-"; structure "0,1-2^"; splice_chain ",207288021-207288116^"; psi "0.200000";
chr10	juncbase	cassette	78771725	78729825	.	-	.	gene_id "cassette.41"; transcript_id "cassette.41"; gene_name "CUFF.1975"; flanks "78771725^,78729825-"; structure "0,1-2^"; splice_chain ",78734331-78734245^"; psi "0.511100";
chr19	juncbase	intron_retention	16178548	16186857	.	-	.	gene_id "intron_retention.36"; transcript_id "intron_retention.36"; gene_name "CUFF.1975"; flanks "16178548-,16186857^"; structure "0,1^2-"; splice_chain ",16178548^16186857-"; psi "0.283200";
chr11	juncbase	intron_retention	67795524	67789000	.	-	.	gene_id "intron_retention.37"; transcript_id "intron_retention.37"; gene_name "CUFF.1975"; flanks "67795524-,67789000^"; structure "0,1^2-"; splice_chain ",67795524^67789000-"; psi "0.991100";
chr19	juncbase	jcn_only_AD	6217965	6216524	.	-	.	gene_id "jcn_only_AD.51"; transcript_id "jcn_only_AD.51"; gene_name "CUFF.1975"; flanks "6217965-,6216524-"; structure "1^,2^"; splice_chain "6217965^,6216747^"; psi "0.752300";
chr3	juncbase	jcn_only_AD	186648623	186681573	.	-	.	gene_id "jcn_only_AD.52"; transcript_id "jcn_only_AD.52"; gene_name "CUFF.1975"; flanks "186648623-,186681573-"; structure "1^,2^"; splice_chain "186648623^,186649183^"; psi "0.939713";
chr3	juncbase	jcn_only_AD	186648927	186681573	.	-	.	gene_id "jcn_only_AD.53"; transcript_id "jcn_only_AD.53"; gene_name "CUFF.1975"; flanks "186648927-,186681573-"; structure "1^,2^"; splice_chain "186648927^,186649183^"; psi "0.784772";
chr1	juncbase	cassette	222819027	222823634	.	-	.	gene_id "cassette.42"; transcript_id "cassette.42"; gene_name "CUFF.1975"; flanks "222819027^,222823634-"; structure "0,1-2^"; splice_chain ",222822171-222822192^"; psi "0.116300";
chr19	juncbase	intron_retention	44764091	44768467	.	-	.	gene_id "intron_retention.38"; transcript_id "intron_retention.38"; gene_name "CUFF.1975"; flanks "44764091-,44768467^"; structure "0,1^2-"; splice_chain ",44764091^44768467-"; psi "0.853700";
chr15	juncbase	jcn_only_AD	77713079	77750746	.	-	.	gene_id "jcn_only_AD.54"; transcript_id "jcn_only_AD.54"; gene_name "CUFF.1975"; flanks "77713079-,77750746-"; structure "1^,2^"; splice_chain "77713079^,77740153^"; psi "0.769231";
chr15	juncbase	jcn_only_AD	77713346	77750746	.	-	.	gene_id "jcn_only_AD.55"; transcript_id "jcn_only_AD.55"; gene_name "CUFF.1975"; flanks "77713346-,77750746-"; structure "1^,2^"; splice_chain "77713346^,77740153^"; psi "0.991510";
chr15	juncbase	jcn_only_AD	77713436	77750746	.	-	.	gene_id "jcn_only_AD.56"; transcript_id "jcn_only_AD.56"; gene_name "CUFF.1975"; flanks "77713436-,77750746-"; structure "1^,2^"; splice_chain "77713436^,77740153^"; psi "0.887556";
chr17	juncbase	cassette	79249769	79244824	.	-	.	gene_id "cassette.43"; transcript_id "cassette.43"; gene_name "CUFF.1975"; flanks "79249769^,79244824-"; structure "0,1-2^"; splice_chain ",79246427-79246316^"; psi "0.288000";
chr18	juncbase	jcn_only_AD	56001124	56008270	.	-	.	gene_id "jcn_only_AD.57"; transcript_id "jcn_only_AD.57"; gene_name "CUFF.1975"; flanks "56001124-,56008270-"; structure "1^,2^"; splice_chain "56001124^,56002769^"; psi "0.948900";
chr11	juncbase	jcn_only_AD	102962516	102960047	.	-	.	gene_id "jcn_only_AD.58"; transcript_id "jcn_only_AD.58"; gene_name "CUFF.1975"; flanks "102962516-,102960047-"; structure "1^,2^"; splice_chain "102962516^,102962413^"; psi "0.518495";
chr4	juncbase	intron_retention	99407889	99403326	.	-	.	gene_id "intron_retention.39"; transcript_id "intron_retention.39"; gene_name "CUFF.1975"; flanks "99407889-,99403326^"; structure "0,1^2-"; splice_chain ",99407889^99403326-"; psi "0.118600";
chr2	juncbase	intron_retention	207655410	207656407	.	-	.	gene_id "intron_retention.40"; transcript_id "intron_retention.40"; gene_name "CUFF.1975"; flanks "207655410-,207656407^"; structure "0,1^2-"; splice_chain ",207655410^207656407-"; psi "0.219300";
chr17	juncbase	cassette	77001454	76994045	.	-	.	gene_id "cassette.44"; transcript_id "cassette.44"; gene_name "CUFF.1975"; flanks "77001454^,76994045-"; structure "0,1-2^"; splice_chain ",76996352-76996182^"; psi "0.726600";
chr17	juncbase	cassette	77005746	76994368	.	-	.	gene_id "cassette.45"; transcript_id "cassette.45"; gene_name "CUFF.1975"; flanks "77005746^,76994368-"; structure "0,1-2^"; splice_chain ",76996352-76996182^"; psi "0.726600";
chr17	juncbase	cassette	77005746	76994045	.	-	.	gene_id "cassette.46"; transcript_id "cassette.46"; gene_name "CUFF.1975"; flanks "77005746^,76994045-"; structure "0,1-2^"; splice_chain ",76996352-76996182^"; psi "0.726600";
chr14	juncbase	jcn_only_AA	106938644	106960261	.	-	.	gene_id "jcn_only_AA.23"; transcript_id "jcn_only_AA.23"; gene_name "CUFF.1975"; flanks "106938644^,106960261^"; structure "1-,2-"; splice_chain "106944775-,106960261-"; psi "0.493000";
chr11	juncbase	jcn_only_AA	75522469	75514562	.	-	.	gene_id "jcn_only_AA.24"; transcript_id "jcn_only_AA.24"; gene_name "CUFF.1975"; flanks "75522469^,75514562^"; structure "1-,2-"; splice_chain "75520419-,75514562-"; psi "0.788524";
chr11	juncbase	jcn_only_AA	75522469	75514770	.	-	.	gene_id "jcn_only_AA.25"; transcript_id "jcn_only_AA.25"; gene_name "CUFF.1975"; flanks "75522469^,75514770^"; structure "1-,2-"; splice_chain "75520419-,75514770-"; psi "0.772037";
chr20	juncbase	jcn_only_AD	33104266	33114073	.	-	.	gene_id "jcn_only_AD.59"; transcript_id "jcn_only_AD.59"; gene_name "CUFF.1975"; flanks "33104266-,33114073-"; structure "1^,2^"; splice_chain "33104266^,33104681^"; psi "0.752400";
chr11	juncbase	intron_retention	63999436	63999902	.	-	.	gene_id "intron_retention.41"; transcript_id "intron_retention.41"; gene_name "CUFF.1975"; flanks "63999436-,63999902^"; structure "0,1^2-"; splice_chain ",63999436^63999902-"; psi "0.754400";
chr1	juncbase	intron_retention	41487295	41486605	.	-	.	gene_id "intron_retention.42"; transcript_id "intron_retention.42"; gene_name "CUFF.1975"; flanks "41487295-,41486605^"; structure "0,1^2-"; splice_chain ",41487295^41486605-"; psi "0.680200";
chr17	juncbase	jcn_only_AA	29657516	29661856	.	-	.	gene_id "jcn_only_AA.26"; transcript_id "jcn_only_AA.26"; gene_name "CUFF.1975"; flanks "29657516^,29661856^"; structure "1-,2-"; splice_chain "29661682-,29661856-"; psi "0.769200";
chr3	juncbase	cassette	33438537	33437772	.	-	.	gene_id "cassette.47"; transcript_id "cassette.47"; gene_name "CUFF.1975"; flanks "33438537^,33437772-"; structure "0,1-2^"; splice_chain ",33438370-33438237^"; psi "0.552400";
chr6	juncbase	jcn_only_AA	31938689	31938529	.	-	.	gene_id "jcn_only_AA.27"; transcript_id "jcn_only_AA.27"; gene_name "CUFF.1975"; flanks "31938689^,31938529^"; structure "1-,2-"; splice_chain "31938602-,31938529-"; psi "0.607800";
chr14	juncbase	jcn_only_AD	81902665	81893556	.	-	.	gene_id "jcn_only_AD.60"; transcript_id "jcn_only_AD.60"; gene_name "CUFF.1975"; flanks "81902665-,81893556-"; structure "1^,2^"; splice_chain "81902665^,81902432^"; psi "0.339335";
chr6	juncbase	intron_retention	31938370	31938155	.	-	.	gene_id "intron_retention.43"; transcript_id "intron_retention.43"; gene_name "CUFF.1975"; flanks "31938370-,31938155^"; structure "0,1^2-"; splice_chain ",31938370^31938155-"; psi "0.280000";
chr9	juncbase	intron_retention	46687799	46687683	.	-	.	gene_id "intron_retention.44"; transcript_id "intron_retention.44"; gene_name "CUFF.1975"; flanks "46687799-,46687683^"; structure "0,1^2-"; splice_chain ",46687799^46687683-"; psi "0.606100";
chr11	juncbase	intron_retention	119056219	119056558	.	-	.	gene_id "intron_retention.45"; transcript_id "intron_retention.45"; gene_name "CUFF.1975"; flanks "119056219-,119056558^"; structure "0,1^2-"; splice_chain ",119056219^119056558-"; psi "0.377400";
chr15	juncbase	jcn_only_AA	74758471	74771401	.	-	.	gene_id "jcn_only_AA.28"; transcript_id "jcn_only_AA.28"; gene_name "CUFF.1975"; flanks "74758471^,74771401^"; structure "1-,2-"; splice_chain "74771385-,74771401-"; psi "0.857800";
chr14	juncbase	jcn_only_AD	77928585	77934426	.	-	.	gene_id "jcn_only_AD.61"; transcript_id "jcn_only_AD.61"; gene_name "CUFF.1975"; flanks "77928585-,77934426-"; structure "1^,2^"; splice_chain "77928585^,77932010^"; psi "0.056600";
chr19	juncbase	cassette	5903623	5897008	.	-	.	gene_id "cassette.48"; transcript_id "cassette.48"; gene_name "CUFF.1975"; flanks "5903623^,5897008-"; structure "0,1-2^"; splice_chain ",5901465-5901346^"; psi "0.866500";
chr2	juncbase	cassette	23599655	23598555	.	-	.	gene_id "cassette.49"; transcript_id "cassette.49"; gene_name "CUFF.1975"; flanks "23599655^,23598555-"; structure "0,1-2^"; splice_chain ",23599200-23599109^"; psi "0.732200";
chr3	juncbase	intron_retention	51748137	51749078	.	-	.	gene_id "intron_retention.46"; transcript_id "intron_retention.46"; gene_name "CUFF.1975"; flanks "51748137-,51749078^"; structure "0,1^2-"; splice_chain ",51748137^51749078-"; psi "0.116700";
chr14	juncbase	jcn_only_AD	24459568	24464241	.	-	.	gene_id "jcn_only_AD.62"; transcript_id "jcn_only_AD.62"; gene_name "CUFF.1975"; flanks "24459568-,24464241-"; structure "1^,2^"; splice_chain "24459568^,24460161^"; psi "0.782600";
chr2	juncbase	cassette	219445463	219447694	.	-	.	gene_id "cassette.50"; transcript_id "cassette.50"; gene_name "CUFF.1975"; flanks "219445463^,219447694-"; structure "0,1-2^"; splice_chain ",219445718-219445837^"; psi "0.299400";
chr6	juncbase	jcn_only_AA	161413115	161491640	.	-	.	gene_id "jcn_only_AA.29"; transcript_id "jcn_only_AA.29"; gene_name "CUFF.1975"; flanks "161413115^,161491640^"; structure "1-,2-"; splice_chain "161455291-,161491640-"; psi "0.846200";
chr18	juncbase	jcn_only_AA	12014372	12021701	.	-	.	gene_id "jcn_only_AA.30"; transcript_id "jcn_only_AA.30"; gene_name "CUFF.1975"; flanks "12014372^,12021701^"; structure "1-,2-"; splice_chain "12017613-,12021701-"; psi "0.684391";
chr18	juncbase	jcn_only_AA	12014372	12028042	.	-	.	gene_id "jcn_only_AA.31"; transcript_id "jcn_only_AA.31"; gene_name "CUFF.1975"; flanks "12014372^,12028042^"; structure "1-,2-"; splice_chain "12017613-,12028042-"; psi "0.960009";
chr7	juncbase	intron_retention	107221022	107221204	.	-	.	gene_id "intron_retention.47"; transcript_id "intron_retention.47"; gene_name "CUFF.1975"; flanks "107221022-,107221204^"; structure "0,1^2-"; splice_chain ",107221022^107221204-"; psi "0.857100";
chr12	juncbase	jcn_only_AD	22672049	22666313	.	-	.	gene_id "jcn_only_AD.63"; transcript_id "jcn_only_AD.63"; gene_name "CUFF.1975"; flanks "22672049-,22666313-"; structure "1^,2^"; splice_chain "22672049^,22670920^"; psi "0.676200";
chr6	juncbase	jcn_only_AA	43484465	43483833	.	-	.	gene_id "jcn_only_AA.32"; transcript_id "jcn_only_AA.32"; gene_name "CUFF.1975"; flanks "43484465^,43483833^"; structure "1-,2-"; splice_chain "43483925-,43483833-"; psi "0.081355";
chr6	juncbase	jcn_only_AA	43484465	43483851	.	-	.	gene_id "jcn_only_AA.33"; transcript_id "jcn_only_AA.33"; gene_name "CUFF.1975"; flanks "43484465^,43483851^"; structure "1-,2-"; splice_chain "43483925-,43483851-"; psi "0.041981";
chr6	juncbase	jcn_only_AA	43484465	43483784	.	-	.	gene_id "jcn_only_AA.34"; transcript_id "jcn_only_AA.34"; gene_name "CUFF.1975"; flanks "43484465^,43483784^"; structure "1-,2-"; splice_chain "43483925-,43483784-"; psi "0.141763";
chr8	juncbase	jcn_only_AD	99057943	99057627	.	-	.	gene_id "jcn_only_AD.64"; transcript_id "jcn_only_AD.64"; gene_name "CUFF.1975"; flanks "99057943-,99057627-"; structure "1^,2^"; splice_chain "99057943^,99057736^"; psi "0.056300";
chr14	juncbase	cassette	50249175	50249548	.	-	.	gene_id "cassette.51"; transcript_id "cassette.51"; gene_name "CUFF.1975"; flanks "50249175^,50249548-"; structure "0,1-2^"; splice_chain ",50249260-50249312^"; psi "0.784700";
chr17	juncbase	jcn_only_AD	66524041	66525011	.	-	.	gene_id "jcn_only_AD.65"; transcript_id "jcn_only_AD.65"; gene_name "CUFF.1975"; flanks "66524041-,66525011-"; structure "1^,2^"; splice_chain "66524041^,66524860^"; psi "0.720300";
chr6	juncbase	cassette	88058624	88066019	.	-	.	gene_id "cassette.52"; transcript_id "cassette.52"; gene_name "CUFF.1975"; flanks "88058624^,88066019-"; structure "0,1-2^"; splice_chain ",88060112-88060219^"; psi "0.972600";
chr22	juncbase	intron_retention	21846283	21842670	.	-	.	gene_id "intron_retention.48"; transcript_id "intron_retention.48"; gene_name "CUFF.1975"; flanks "21846283-,21842670^"; structure "0,1^2-"; splice_chain ",21846283^21842670-"; psi "0.225000";
chr6	juncbase	jcn_only_AD	32130399	32133915	.	-	.	gene_id "jcn_only_AD.66"; transcript_id "jcn_only_AD.66"; gene_name "CUFF.1975"; flanks "32130399-,32133915-"; structure "1^,2^"; splice_chain "32130399^,32132434^"; psi "0.285700";
chr17	juncbase	cassette	41738434	41719400	.	-	.	gene_id "cassette.53"; transcript_id "cassette.53"; gene_name "CUFF.1975"; flanks "41738434^,41719400-"; structure "0,1-2^"; splice_chain ",41721028-41720856^"; psi "0.644000";
chr11	juncbase	intron_retention	827318	828260	.	-	.	gene_id "intron_retention.49"; transcript_id "intron_retention.49"; gene_name "CUFF.1975"; flanks "827318-,828260^"; structure "0,1^2-"; splice_chain ",827318^828260-"; psi "0.201100";
chr17	juncbase	jcn_only_AD	79895138	79894737	.	-	.	gene_id "jcn_only_AD.67"; transcript_id "jcn_only_AD.67"; gene_name "CUFF.1975"; flanks "79895138-,79894737-"; structure "1^,2^"; splice_chain "79895138^,79895056^"; psi "0.938859";
chr17	juncbase	jcn_only_AD	79895404	79894737	.	-	.	gene_id "jcn_only_AD.68"; transcript_id "jcn_only_AD.68"; gene_name "CUFF.1975"; flanks "79895404-,79894737-"; structure "1^,2^"; splice_chain "79895404^,79895056^"; psi "0.659091";
chr17	juncbase	jcn_only_AD	79895134	79894737	.	-	.	gene_id "jcn_only_AD.69"; transcript_id "jcn_only_AD.69"; gene_name "CUFF.1975"; flanks "79895134-,79894737-"; structure "1^,2^"; splice_chain "79895134^,79895056^"; psi "0.926859";
chr17	juncbase	jcn_only_AD	79895069	79894737	.	-	.	gene_id "jcn_only_AD.70"; transcript_id "jcn_only_AD.70"; gene_name "CUFF.1975"; flanks "79895069-,79894737-"; structure "1^,2^"; splice_chain "79895069^,79895056^"; psi "0.883117";
chr17	juncbase	jcn_only_AD	79895104	79894737	.	-	.	gene_id "jcn_only_AD.71"; transcript_id "jcn_only_AD.71"; gene_name "CUFF.1975"; flanks "79895104-,79894737-"; structure "1^,2^"; splice_chain "79895104^,79895056^"; psi "0.886364";
chr19	juncbase	jcn_only_AA	41533448	41533164	.	-	.	gene_id "jcn_only_AA.35"; transcript_id "jcn_only_AA.35"; gene_name "CUFF.1975"; flanks "41533448^,41533164^"; structure "1-,2-"; splice_chain "41533169-,41533164-"; psi "0.229200";
chr2	juncbase	jcn_only_AA	3482704	3488491	.	-	.	gene_id "jcn_only_AA.36"; transcript_id "jcn_only_AA.36"; gene_name "CUFF.1975"; flanks "3482704^,3488491^"; structure "1-,2-"; splice_chain "3482990-,3488491-"; psi "0.023000";
chr17	juncbase	jcn_only_AA	15584179	15546130	.	-	.	gene_id "jcn_only_AA.37"; transcript_id "jcn_only_AA.37"; gene_name "CUFF.1975"; flanks "15584179^,15546130^"; structure "1-,2-"; splice_chain "15557745-,15546130-"; psi "0.655824";
chr3	juncbase	jcn_only_AD	33612219	33602463	.	-	.	gene_id "jcn_only_AD.72"; transcript_id "jcn_only_AD.72"; gene_name "CUFF.1975"; flanks "33612219-,33602463-"; structure "1^,2^"; splice_chain "33612219^,33605456^"; psi "0.878800";
chr19	juncbase	cassette	11537693	11537391	.	-	.	gene_id "cassette.54"; transcript_id "cassette.54"; gene_name "CUFF.1975"; flanks "11537693^,11537391-"; structure "0,1-2^"; splice_chain ",11537604-11537503^"; psi "0.475200";
chr6	juncbase	jcn_only_AD	31939706	31938924	.	-	.	gene_id "jcn_only_AD.73"; transcript_id "jcn_only_AD.73"; gene_name "CUFF.1975"; flanks "31939706-,31938924-"; structure "1^,2^"; splice_chain "31939706^,31939097^"; psi "0.039600";
chr16	juncbase	intron_retention	30006424	30006164	.	-	.	gene_id "intron_retention.50"; transcript_id "intron_retention.50"; gene_name "CUFF.1975"; flanks "30006424-,30006164^"; structure "0,1^2-"; splice_chain ",30006424^30006164-"; psi "0.862800";
chr11	juncbase	intron_retention	10828836	10827487	.	-	.	gene_id "intron_retention.51"; transcript_id "intron_retention.51"; gene_name "CUFF.1975"; flanks "10828836-,10827487^"; structure "0,1^2-"; splice_chain ",10828836^10827487-"; psi "0.866200";
chr11	juncbase	jcn_only_AD	119249717	119244231	.	-	.	gene_id "jcn_only_AD.74"; transcript_id "jcn_only_AD.74"; gene_name "CUFF.1975"; flanks "119249717-,119244231-"; structure "1^,2^"; splice_chain "119249717^,119246934^"; psi "0.708556";
chr11	juncbase	jcn_only_AD	119252183	119244231	.	-	.	gene_id "jcn_only_AD.75"; transcript_id "jcn_only_AD.75"; gene_name "CUFF.1975"; flanks "119252183-,119244231-"; structure "1^,2^"; splice_chain "119252183^,119246934^"; psi "0.247885";
chr7	juncbase	jcn_only_AD	37488463	37433520	.	-	.	gene_id "jcn_only_AD.76"; transcript_id "jcn_only_AD.76"; gene_name "CUFF.1975"; flanks "37488463-,37433520-"; structure "1^,2^"; splice_chain "37488463^,37488278^"; psi "0.815200";
chr2	juncbase	intron_retention	220100034	220100196	.	-	.	gene_id "intron_retention.52"; transcript_id "intron_retention.52"; gene_name "CUFF.1975"; flanks "220100034-,220100196^"; structure "0,1^2-"; splice_chain ",220100034^220100196-"; psi "0.566800";
chr4	juncbase	cassette	647108	647641	.	-	.	gene_id "cassette.55"; transcript_id "cassette.55"; gene_name "CUFF.1975"; flanks "647108^,647641-"; structure "0,1-2^"; splice_chain ",647226-647496^"; psi "0.965400";
chr2	juncbase	jcn_only_AA	110922097	110920709	.	-	.	gene_id "jcn_only_AA.38"; transcript_id "jcn_only_AA.38"; gene_name "CUFF.1975"; flanks "110922097^,110920709^"; structure "1-,2-"; splice_chain "110920712-,110920709-"; psi "0.692300";
chr7	juncbase	cassette	150831655	150837066	.	-	.	gene_id "cassette.56"; transcript_id "cassette.56"; gene_name "CUFF.1975"; flanks "150831655^,150837066-"; structure "0,1-2^"; splice_chain ",150835230-150835400^"; psi "0.975300";
chr16	juncbase	intron_retention	15155646	15154030	.	-	.	gene_id "intron_retention.53"; transcript_id "intron_retention.53"; gene_name "CUFF.1975"; flanks "15155646-,15154030^"; structure "0,1^2-"; splice_chain ",15155646^15154030-"; psi "0.896600";
chr12	juncbase	cassette	69207408	69233054	.	-	.	gene_id "cassette.57"; transcript_id "cassette.57"; gene_name "CUFF.1975"; flanks "69207408^,69233054-"; structure "0,1-2^"; splice_chain ",69229609-69229764^"; psi "0.690800";
chr12	juncbase	cassette	69222711	69233054	.	-	.	gene_id "cassette.58"; transcript_id "cassette.58"; gene_name "CUFF.1975"; flanks "69222711^,69233054-"; structure "0,1-2^"; splice_chain ",69229609-69229764^"; psi "0.690800";
chr12	juncbase	cassette	69203072	69233054	.	-	.	gene_id "cassette.59"; transcript_id "cassette.59"; gene_name "CUFF.1975"; flanks "69203072^,69233054-"; structure "0,1-2^"; splice_chain ",69229609-69229764^"; psi "0.690800";
chr12	juncbase	cassette	69218431	69233054	.	-	.	gene_id "cassette.60"; transcript_id "cassette.60"; gene_name "CUFF.1975"; flanks "69218431^,69233054-"; structure "0,1-2^"; splice_chain ",69229609-69229764^"; psi "0.690800";
chr7	juncbase	jcn_only_AA	107577538	107576101	.	-	.	gene_id "jcn_only_AA.39"; transcript_id "jcn_only_AA.39"; gene_name "CUFF.1975"; flanks "107577538^,107576101^"; structure "1-,2-"; splice_chain "107576818-,107576101-"; psi "0.840100";
chr6	juncbase	cassette	133049880	133046118	.	-	.	gene_id "cassette.61"; transcript_id "cassette.61"; gene_name "CUFF.1975"; flanks "133049880^,133046118-"; structure "0,1-2^"; splice_chain ",133048151-133047861^"; psi "0.577300";
chr6	juncbase	cassette	133055392	133046118	.	-	.	gene_id "cassette.62"; transcript_id "cassette.62"; gene_name "CUFF.1975"; flanks "133055392^,133046118-"; structure "0,1-2^"; splice_chain ",133048151-133047861^"; psi "0.577300";
chr11	juncbase	intron_retention	102962413	102960047	.	-	.	gene_id "intron_retention.54"; transcript_id "intron_retention.54"; gene_name "CUFF.1975"; flanks "102962413-,102960047^"; structure "0,1^2-"; splice_chain ",102962413^102960047-"; psi "0.496100";
chr15	juncbase	jcn_only_AD	31294233	31327956	.	-	.	gene_id "jcn_only_AD.77"; transcript_id "jcn_only_AD.77"; gene_name "CUFF.1975"; flanks "31294233-,31327956-"; structure "1^,2^"; splice_chain "31294233^,31327859^"; psi "0.324300";
chr1	juncbase	intron_retention	153925281	153925111	.	-	.	gene_id "intron_retention.55"; transcript_id "intron_retention.55"; gene_name "CUFF.1975"; flanks "153925281-,153925111^"; structure "0,1^2-"; splice_chain ",153925281^153925111-"; psi "0.215400";
chr6	juncbase	jcn_only_AD	90326376	90327673	.	-	.	gene_id "jcn_only_AD.78"; transcript_id "jcn_only_AD.78"; gene_name "CUFF.1975"; flanks "90326376-,90327673-"; structure "1^,2^"; splice_chain "90326376^,90326675^"; psi "0.748000";
chr2	juncbase	jcn_only_AA	79365093	79364463	.	-	.	gene_id "jcn_only_AA.40"; transcript_id "jcn_only_AA.40"; gene_name "CUFF.1975"; flanks "79365093^,79364463^"; structure "1-,2-"; splice_chain "79364468-,79364463-"; psi "0.787400";
chrX	juncbase	jcn_only_AD	148863658	148867664	.	-	.	gene_id "jcn_only_AD.79"; transcript_id "jcn_only_AD.79"; gene_name "CUFF.1975"; flanks "148863658-,148867664-"; structure "1^,2^"; splice_chain "148863658^,148863690^"; psi "0.363636";
chr17	juncbase	cassette	66509119	66511535	.	-	.	gene_id "cassette.63"; transcript_id "cassette.63"; gene_name "CUFF.1975"; flanks "66509119^,66511535-"; structure "0,1-2^"; splice_chain ",66511128-66511260^"; psi "0.336300";
chr17	juncbase	cassette	66508689	66511535	.	-	.	gene_id "cassette.64"; transcript_id "cassette.64"; gene_name "CUFF.1975"; flanks "66508689^,66511535-"; structure "0,1-2^"; splice_chain ",66511128-66511260^"; psi "0.336300";
chr17	juncbase	cassette	66508283	66511535	.	-	.	gene_id "cassette.65"; transcript_id "cassette.65"; gene_name "CUFF.1975"; flanks "66508283^,66511535-"; structure "0,1-2^"; splice_chain ",66511128-66511260^"; psi "0.336300";
chr2	juncbase	jcn_only_AA	232258621	232259492	.	-	.	gene_id "jcn_only_AA.41"; transcript_id "jcn_only_AA.41"; gene_name "CUFF.1975"; flanks "232258621^,232259492^"; structure "1-,2-"; splice_chain "232259366-,232259492-"; psi "0.457100";
chr7	juncbase	intron_retention	150815431	150815592	.	-	.	gene_id "intron_retention.56"; transcript_id "intron_retention.56"; gene_name "CUFF.1975"; flanks "150815431-,150815592^"; structure "0,1^2-"; splice_chain ",150815431^150815592-"; psi "0.073300";
chr4	juncbase	intron_retention	2933552	2933390	.	-	.	gene_id "intron_retention.57"; transcript_id "intron_retention.57"; gene_name "CUFF.1975"; flanks "2933552-,2933390^"; structure "0,1^2-"; splice_chain ",2933552^2933390-"; psi "0.513900";
chr2	juncbase	jcn_only_AD	88926485	88913371	.	-	.	gene_id "jcn_only_AD.80"; transcript_id "jcn_only_AD.80"; gene_name "CUFF.1975"; flanks "88926485-,88913371-"; structure "1^,2^"; splice_chain "88926485^,88924264^"; psi "0.666700";
chr19	juncbase	jcn_only_AD	39926298	39924401	.	-	.	gene_id "jcn_only_AD.81"; transcript_id "jcn_only_AD.81"; gene_name "CUFF.1975"; flanks "39926298-,39924401-"; structure "1^,2^"; splice_chain "39926298^,39926247^"; psi "0.123700";
chr9	juncbase	intron_retention	130941352	130941183	.	-	.	gene_id "intron_retention.58"; transcript_id "intron_retention.58"; gene_name "CUFF.1975"; flanks "130941352-,130941183^"; structure "0,1^2-"; splice_chain ",130941352^130941183-"; psi "0.909700";
chr1	juncbase	cassette	167353188	167365523	.	-	.	gene_id "cassette.66"; transcript_id "cassette.66"; gene_name "CUFF.1975"; flanks "167353188^,167365523-"; structure "0,1-2^"; splice_chain ",167358825-167358998^"; psi "0.739400";
chr16	juncbase	intron_retention	21712348	21716490	.	-	.	gene_id "intron_retention.59"; transcript_id "intron_retention.59"; gene_name "CUFF.1975"; flanks "21712348-,21716490^"; structure "0,1^2-"; splice_chain ",21712348^21716490-"; psi "0.125000";
chr17	juncbase	intron_retention	79478214	79478134	.	-	.	gene_id "intron_retention.60"; transcript_id "intron_retention.60"; gene_name "CUFF.1975"; flanks "79478214-,79478134^"; structure "0,1^2-"; splice_chain ",79478214^79478134-"; psi "0.009600";
chr15	juncbase	jcn_only_AD	84898604	84873727	.	-	.	gene_id "jcn_only_AD.82"; transcript_id "jcn_only_AD.82"; gene_name "CUFF.1975"; flanks "84898604-,84873727-"; structure "1^,2^"; splice_chain "84898604^,84873983^"; psi "0.214300";
chr6	juncbase	jcn_only_AA	31513886	31509925	.	-	.	gene_id "jcn_only_AA.42"; transcript_id "jcn_only_AA.42"; gene_name "CUFF.1975"; flanks "31513886^,31509925^"; structure "1-,2-"; splice_chain "31512535-,31509925-"; psi "0.276800";
chr19	juncbase	jcn_only_AA	52917621	52918377	.	-	.	gene_id "jcn_only_AA.43"; transcript_id "jcn_only_AA.43"; gene_name "CUFF.1975"; flanks "52917621^,52918377^"; structure "1-,2-"; splice_chain "52918192-,52918377-"; psi "0.423100";
chr10	juncbase	jcn_only_AA	73972945	73956747	.	-	.	gene_id "jcn_only_AA.44"; transcript_id "jcn_only_AA.44"; gene_name "CUFF.1975"; flanks "73972945^,73956747^"; structure "1-,2-"; splice_chain "73972043-,73956747-"; psi "0.316656";
chr10	juncbase	jcn_only_AA	73972945	73970589	.	-	.	gene_id "jcn_only_AA.45"; transcript_id "jcn_only_AA.45"; gene_name "CUFF.1975"; flanks "73972945^,73970589^"; structure "1-,2-"; splice_chain "73972043-,73970589-"; psi "0.886421";
chr7	juncbase	jcn_only_AA	73101425	73277203	.	-	.	gene_id "jcn_only_AA.46"; transcript_id "jcn_only_AA.46"; gene_name "CUFF.1975"; flanks "73101425^,73277203^"; structure "1-,2-"; splice_chain "73106926-,73277203-"; psi "0.036580";
chr15	juncbase	jcn_only_AA	44898223	44892830	.	-	.	gene_id "jcn_only_AA.47"; transcript_id "jcn_only_AA.47"; gene_name "CUFF.1975"; flanks "44898223^,44892830^"; structure "1-,2-"; splice_chain "44896395-,44892830-"; psi "0.906200";
chr16	juncbase	cassette	3117416	3118181	.	-	.	gene_id "cassette.67"; transcript_id "cassette.67"; gene_name "CUFF.1975"; flanks "3117416^,3118181-"; structure "0,1-2^"; splice_chain ",3117555-3117614^"; psi "0.963400";
chr16	juncbase	cassette	3117416	3117985	.	-	.	gene_id "cassette.68"; transcript_id "cassette.68"; gene_name "CUFF.1975"; flanks "3117416^,3117985-"; structure "0,1-2^"; splice_chain ",3117555-3117614^"; psi "0.963400";
chr5	juncbase	jcn_only_AA	472794	466641	.	-	.	gene_id "jcn_only_AA.48"; transcript_id "jcn_only_AA.48"; gene_name "CUFF.1975"; flanks "472794^,466641^"; structure "1-,2-"; splice_chain "472080-,466641-"; psi "0.987762";
chr5	juncbase	jcn_only_AA	472794	471938	.	-	.	gene_id "jcn_only_AA.49"; transcript_id "jcn_only_AA.49"; gene_name "CUFF.1975"; flanks "472794^,471938^"; structure "1-,2-"; splice_chain "472080-,471938-"; psi "0.488479";
chr1	juncbase	intron_retention	25558935	25558702	.	-	.	gene_id "intron_retention.61"; transcript_id "intron_retention.61"; gene_name "CUFF.1975"; flanks "25558935-,25558702^"; structure "0,1^2-"; splice_chain ",25558935^25558702-"; psi "0.450700";
chr12	juncbase	jcn_only_AA	72083484	72090216	.	-	.	gene_id "jcn_only_AA.50"; transcript_id "jcn_only_AA.50"; gene_name "CUFF.1975"; flanks "72083484^,72090216^"; structure "1-,2-"; splice_chain "72084119-,72090216-"; psi "0.575200";
chr14	juncbase	intron_retention	75158744	75152363	.	-	.	gene_id "intron_retention.62"; transcript_id "intron_retention.62"; gene_name "CUFF.1975"; flanks "75158744-,75152363^"; structure "0,1^2-"; splice_chain ",75158744^75152363-"; psi "0.197400";
chr6	juncbase	intron_retention	43481326	43481189	.	-	.	gene_id "intron_retention.63"; transcript_id "intron_retention.63"; gene_name "CUFF.1975"; flanks "43481326-,43481189^"; structure "0,1^2-"; splice_chain ",43481326^43481189-"; psi "0.365900";
chr11	juncbase	jcn_only_AA	63656436	63662631	.	-	.	gene_id "jcn_only_AA.51"; transcript_id "jcn_only_AA.51"; gene_name "CUFF.1975"; flanks "63656436^,63662631^"; structure "1-,2-"; splice_chain "63657694-,63662631-"; psi "0.115400";
chr3	juncbase	jcn_only_AA	107573977	107572901	.	-	.	gene_id "jcn_only_AA.52"; transcript_id "jcn_only_AA.52"; gene_name "CUFF.1975"; flanks "107573977^,107572901^"; structure "1-,2-"; splice_chain "107573541-,107572901-"; psi "0.937786";
chr3	juncbase	jcn_only_AA	107573977	107572806	.	-	.	gene_id "jcn_only_AA.53"; transcript_id "jcn_only_AA.53"; gene_name "CUFF.1975"; flanks "107573977^,107572806^"; structure "1-,2-"; splice_chain "107573541-,107572806-"; psi "0.589799";
chr10	juncbase	cassette	106976880	106982874	.	-	.	gene_id "cassette.69"; transcript_id "cassette.69"; gene_name "CUFF.1975"; flanks "106976880^,106982874-"; structure "0,1-2^"; splice_chain ",106977602-106977723^"; psi "0.611100";
chr16	juncbase	jcn_only_AD	4466786	4463405	.	-	.	gene_id "jcn_only_AD.83"; transcript_id "jcn_only_AD.83"; gene_name "CUFF.1975"; flanks "4466786-,4463405-"; structure "1^,2^"; splice_chain "4466786^,4466460^"; psi "0.021586";
chr11	juncbase	intron_retention	65482381	65484138	.	-	.	gene_id "intron_retention.64"; transcript_id "intron_retention.64"; gene_name "CUFF.1975"; flanks "65482381-,65484138^"; structure "0,1^2-"; splice_chain ",65482381^65484138-"; psi "0.023300";
chr19	juncbase	intron_retention	17449064	17449174	.	-	.	gene_id "intron_retention.65"; transcript_id "intron_retention.65"; gene_name "CUFF.1975"; flanks "17449064-,17449174^"; structure "0,1^2-"; splice_chain ",17449064^17449174-"; psi "0.127500";
chr3	juncbase	jcn_only_AA	107596749	107586424	.	-	.	gene_id "jcn_only_AA.54"; transcript_id "jcn_only_AA.54"; gene_name "CUFF.1975"; flanks "107596749^,107586424^"; structure "1-,2-"; splice_chain "107595033-,107586424-"; psi "0.211456";
chr3	juncbase	jcn_only_AA	107596749	107591873	.	-	.	gene_id "jcn_only_AA.55"; transcript_id "jcn_only_AA.55"; gene_name "CUFF.1975"; flanks "107596749^,107591873^"; structure "1-,2-"; splice_chain "107595033-,107591873-"; psi "0.106024";
chrX	juncbase	intron_retention	107381114	107393382	.	-	.	gene_id "intron_retention.66"; transcript_id "intron_retention.66"; gene_name "CUFF.1975"; flanks "107381114-,107393382^"; structure "0,1^2-"; splice_chain ",107381114^107393382-"; psi "0.807900";
chrX	juncbase	jcn_only_AA	19955623	19948772	.	-	.	gene_id "jcn_only_AA.56"; transcript_id "jcn_only_AA.56"; gene_name "CUFF.1975"; flanks "19955623^,19948772^"; structure "1-,2-"; splice_chain "19954016-,19948772-"; psi "0.382800";
chr18	juncbase	jcn_only_AD	76738786	76737429	.	-	.	gene_id "jcn_only_AD.84"; transcript_id "jcn_only_AD.84"; gene_name "CUFF.1975"; flanks "76738786-,76737429-"; structure "1^,2^"; splice_chain "76738786^,76738463^"; psi "0.525814";
chr10	juncbase	jcn_only_AD	124186547	124189140	.	-	.	gene_id "jcn_only_AD.85"; transcript_id "jcn_only_AD.85"; gene_name "CUFF.1975"; flanks "124186547-,124189140-"; structure "1^,2^"; splice_chain "124186547^,124187832^"; psi "0.564123";
chr3	juncbase	jcn_only_AA	107573977	107572806	.	-	.	gene_id "jcn_only_AA.57"; transcript_id "jcn_only_AA.57"; gene_name "CUFF.1975"; flanks "107573977^,107572806^"; structure "1-,2-"; splice_chain "107572901-,107572806-"; psi "0.087081";
chr18	juncbase	cassette	12009986	12014264	.	-	.	gene_id "cassette.70"; transcript_id "cassette.70"; gene_name "CUFF.1975"; flanks "12009986^,12014264-"; structure "0,1-2^"; splice_chain ",12012169-12012348^"; psi "0.598700";
chr8	juncbase	intron_retention	99057171	99054946	.	-	.	gene_id "intron_retention.67"; transcript_id "intron_retention.67"; gene_name "CUFF.1975"; flanks "99057171-,99054946^"; structure "0,1^2-"; splice_chain ",99057171^99054946-"; psi "0.706500";
chr2	juncbase	cassette	31425000	31423491	.	-	.	gene_id "cassette.71"; transcript_id "cassette.71"; gene_name "CUFF.1975"; flanks "31425000^,31423491-"; structure "0,1-2^"; splice_chain ",31424864-31424728^"; psi "0.785700";
chr18	juncbase	cassette	77489069	77513652	.	-	.	gene_id "cassette.72"; transcript_id "cassette.72"; gene_name "CUFF.1975"; flanks "77489069^,77513652-"; structure "0,1-2^"; splice_chain ",77496355-77496521^"; psi "0.793100";
chr19	juncbase	jcn_only_AA	21636352	21632179	.	-	.	gene_id "jcn_only_AA.58"; transcript_id "jcn_only_AA.58"; gene_name "CUFF.1975"; flanks "21636352^,21632179^"; structure "1-,2-"; splice_chain "21636081-,21632179-"; psi "0.131000";
chr3	juncbase	jcn_only_AD	178866007	178916538	.	-	.	gene_id "jcn_only_AD.86"; transcript_id "jcn_only_AD.86"; gene_name "CUFF.1975"; flanks "178866007-,178916538-"; structure "1^,2^"; splice_chain "178866007^,178867504^"; psi "0.869800";
chrX	juncbase	cassette	107369417	107374490	.	-	.	gene_id "cassette.73"; transcript_id "cassette.73"; gene_name "CUFF.1975"; flanks "107369417^,107374490-"; structure "0,1-2^"; splice_chain ",107372011-107372082^"; psi "0.719300";
chr14	juncbase	jcn_only_AD	69619661	69589077	.	-	.	gene_id "jcn_only_AD.87"; transcript_id "jcn_only_AD.87"; gene_name "CUFF.1975"; flanks "69619661-,69589077-"; structure "1^,2^"; splice_chain "69619661^,69619482^"; psi "0.604000";
chr3	juncbase	intron_retention	107574160	107574076	.	-	.	gene_id "intron_retention.68"; transcript_id "intron_retention.68"; gene_name "CUFF.1975"; flanks "107574160-,107574076^"; structure "0,1^2-"; splice_chain ",107574160^107574076-"; psi "0.257600";
chr3	juncbase	jcn_only_AD	49362135	49349087	.	-	.	gene_id "jcn_only_AD.88"; transcript_id "jcn_only_AD.88"; gene_name "CUFF.1975"; flanks "49362135-,49349087-"; structure "1^,2^"; splice_chain "49362135^,49355742^"; psi "0.519505";
chr14	juncbase	cassette	76100039	76129398	.	-	.	gene_id "cassette.74"; transcript_id "cassette.74"; gene_name "CUFF.1975"; flanks "76100039^,76129398-"; structure "0,1-2^"; splice_chain ",76101253-76101356^"; psi "0.465500";
chr10	juncbase	cassette	69597692	69583150	.	-	.	gene_id "cassette.75"; transcript_id "cassette.75"; gene_name "CUFF.1975"; flanks "69597692^,69583150-"; structure "0,1-2^"; splice_chain ",69587441-69587300^"; psi "0.116600";
chr19	juncbase	intron_retention	1438427	1438810	.	-	.	gene_id "intron_retention.69"; transcript_id "intron_retention.69"; gene_name "CUFF.1975"; flanks "1438427-,1438810^"; structure "0,1^2-"; splice_chain ",1438427^1438810-"; psi "0.915200";
chr2	juncbase	intron_retention	118595560	118596783	.	-	.	gene_id "intron_retention.70"; transcript_id "intron_retention.70"; gene_name "CUFF.1975"; flanks "118595560-,118596783^"; structure "0,1^2-"; splice_chain ",118595560^118596783-"; psi "0.449000";
chr4	juncbase	intron_retention	1713928	1713654	.	-	.	gene_id "intron_retention.71"; transcript_id "intron_retention.71"; gene_name "CUFF.1975"; flanks "1713928-,1713654^"; structure "0,1^2-"; splice_chain ",1713928^1713654-"; psi "0.725000";
chr8	juncbase	cassette	23261467	23225947	.	-	.	gene_id "cassette.76"; transcript_id "cassette.76"; gene_name "CUFF.1975"; flanks "23261467^,23225947-"; structure "0,1-2^"; splice_chain ",23228275-23228156^"; psi "0.376700";
chr12	juncbase	jcn_only_AD	69202271	69202988	.	-	.	gene_id "jcn_only_AD.89"; transcript_id "jcn_only_AD.89"; gene_name "CUFF.1975"; flanks "69202271-,69202988-"; structure "1^,2^"; splice_chain "69202271^,69202866^"; psi "0.215000";
chr2	juncbase	cassette	177042439	177041420	.	-	.	gene_id "cassette.77"; transcript_id "cassette.77"; gene_name "CUFF.1975"; flanks "177042439^,177041420-"; structure "0,1-2^"; splice_chain ",177042222-177042060^"; psi "0.839500";
chr7	juncbase	jcn_only_AD	38971878	38937729	.	-	.	gene_id "jcn_only_AD.90"; transcript_id "jcn_only_AD.90"; gene_name "CUFF.1975"; flanks "38971878-,38937729-"; structure "1^,2^"; splice_chain "38971878^,38969072^"; psi "0.622980";
chr17	juncbase	intron_retention	61905569	61906854	.	-	.	gene_id "intron_retention.72"; transcript_id "intron_retention.72"; gene_name "CUFF.1975"; flanks "61905569-,61906854^"; structure "0,1^2-"; splice_chain ",61905569^61906854-"; psi "0.272700";
chr2	juncbase	intron_retention	61726000	61725927	.	-	.	gene_id "intron_retention.73"; transcript_id "intron_retention.73"; gene_name "CUFF.1975"; flanks "61726000-,61725927^"; structure "0,1^2-"; splice_chain ",61726000^61725927-"; psi "0.008000";
chr18	juncbase	jcn_only_AA	14808578	14822604	.	-	.	gene_id "jcn_only_AA.59"; transcript_id "jcn_only_AA.59"; gene_name "CUFF.1975"; flanks "14808578^,14822604^"; structure "1-,2-"; splice_chain "14808671-,14822604-"; psi "0.040000";
chr14	juncbase	cassette	61451521	61482622	.	-	.	gene_id "cassette.78"; transcript_id "cassette.78"; gene_name "CUFF.1975"; flanks "61451521^,61482622-"; structure "0,1-2^"; splice_chain ",61453770-61453875^"; psi "0.326800";
chr17	juncbase	intron_retention	80442806	80446097	.	-	.	gene_id "intron_retention.74"; transcript_id "intron_retention.74"; gene_name "CUFF.1975"; flanks "80442806-,80446097^"; structure "0,1^2-"; splice_chain ",80442806^80446097-"; psi "0.930400";
chrX	juncbase	intron_retention	133594368	133607389	.	-	.	gene_id "intron_retention.75"; transcript_id "intron_retention.75"; gene_name "CUFF.1975"; flanks "133594368-,133607389^"; structure "0,1^2-"; splice_chain ",133594368^133607389-"; psi "0.855700";
chr19	juncbase	jcn_only_AD	6148242	6047515	.	-	.	gene_id "jcn_only_AD.91"; transcript_id "jcn_only_AD.91"; gene_name "CUFF.1975"; flanks "6148242-,6047515-"; structure "1^,2^"; splice_chain "6148242^,6110404^"; psi "0.137250";
chr14	juncbase	jcn_only_AD	31354619	31353880	.	-	.	gene_id "jcn_only_AD.92"; transcript_id "jcn_only_AD.92"; gene_name "CUFF.1975"; flanks "31354619-,31353880-"; structure "1^,2^"; splice_chain "31354619^,31354174^"; psi "0.595600";
chr1	juncbase	intron_retention	222835674	222837340	.	-	.	gene_id "intron_retention.76"; transcript_id "intron_retention.76"; gene_name "CUFF.1975"; flanks "222835674-,222837340^"; structure "0,1^2-"; splice_chain ",222835674^222837340-"; psi "0.655700";
chr12	juncbase	intron_retention	369017	347176	.	-	.	gene_id "intron_retention.77"; transcript_id "intron_retention.77"; gene_name "CUFF.1975"; flanks "369017-,347176^"; structure "0,1^2-"; splice_chain ",369017^347176-"; psi "0.195000";
chr8	juncbase	cassette	144349654	144356874	.	-	.	gene_id "cassette.79"; transcript_id "cassette.79"; gene_name "CUFF.1975"; flanks "144349654^,144356874-"; structure "0,1-2^"; splice_chain ",144351530-144351690^"; psi "0.943800";
chr9	juncbase	jcn_only_AA	15186942	15185404	.	-	.	gene_id "jcn_only_AA.60"; transcript_id "jcn_only_AA.60"; gene_name "CUFF.1975"; flanks "15186942^,15185404^"; structure "1-,2-"; splice_chain "15185526-,15185404-"; psi "0.953500";
chr6	juncbase	intron_retention	165241452	165243010	.	-	.	gene_id "intron_retention.78"; transcript_id "intron_retention.78"; gene_name "CUFF.1975"; flanks "165241452-,165243010^"; structure "0,1^2-"; splice_chain ",165241452^165243010-"; psi "0.190700";
chr11	juncbase	jcn_only_AA	65481319	65482131	.	-	.	gene_id "jcn_only_AA.61"; transcript_id "jcn_only_AA.61"; gene_name "CUFF.1975"; flanks "65481319^,65482131^"; structure "1-,2-"; splice_chain "65481966-,65482131-"; psi "0.037400";
chr16	juncbase	intron_retention	4559539	4559630	.	-	.	gene_id "intron_retention.79"; transcript_id "intron_retention.79"; gene_name "CUFF.1975"; flanks "4559539-,4559630^"; structure "0,1^2-"; splice_chain ",4559539^4559630-"; psi "0.201900";
chr16	juncbase	jcn_only_AA	21976826	22352971	.	-	.	gene_id "jcn_only_AA.62"; transcript_id "jcn_only_AA.62"; gene_name "CUFF.1975"; flanks "21976826^,22352971^"; structure "1-,2-"; splice_chain "21979949-,22352971-"; psi "0.013800";
chr3	juncbase	intron_retention	46966946	46965158	.	-	.	gene_id "intron_retention.80"; transcript_id "intron_retention.80"; gene_name "CUFF.1975"; flanks "46966946-,46965158^"; structure "0,1^2-"; splice_chain ",46966946^46965158-"; psi "0.297700";
chr3	juncbase	jcn_only_AD	165503933	165491294	.	-	.	gene_id "jcn_only_AD.93"; transcript_id "jcn_only_AD.93"; gene_name "CUFF.1975"; flanks "165503933-,165491294-"; structure "1^,2^"; splice_chain "165503933^,165495505^"; psi "0.876000";
chr7	juncbase	intron_retention	127251999	127251730	.	-	.	gene_id "intron_retention.81"; transcript_id "intron_retention.81"; gene_name "CUFF.1975"; flanks "127251999-,127251730^"; structure "0,1^2-"; splice_chain ",127251999^127251730-"; psi "0.091500";
chr19	juncbase	intron_retention	14883154	14876616	.	-	.	gene_id "intron_retention.82"; transcript_id "intron_retention.82"; gene_name "CUFF.1975"; flanks "14883154-,14876616^"; structure "0,1^2-"; splice_chain ",14883154^14876616-"; psi "0.585400";
chr17	juncbase	intron_retention	47307939	47304120	.	-	.	gene_id "intron_retention.83"; transcript_id "intron_retention.83"; gene_name "CUFF.1975"; flanks "47307939-,47304120^"; structure "0,1^2-"; splice_chain ",47307939^47304120-"; psi "0.575000";
chr2	juncbase	cassette	73195577	73172228	.	-	.	gene_id "cassette.80"; transcript_id "cassette.80"; gene_name "CUFF.1975"; flanks "73195577^,73172228-"; structure "0,1-2^"; splice_chain ",73188377-73188260^"; psi "0.595500";
chr6	juncbase	jcn_only_AA	126307768	126314939	.	-	.	gene_id "jcn_only_AA.63"; transcript_id "jcn_only_AA.63"; gene_name "CUFF.1975"; flanks "126307768^,126314939^"; structure "1-,2-"; splice_chain "126314903-,126314939-"; psi "0.118300";
chr22	juncbase	intron_retention	30735119	30735023	.	-	.	gene_id "intron_retention.84"; transcript_id "intron_retention.84"; gene_name "CUFF.1975"; flanks "30735119-,30735023^"; structure "0,1^2-"; splice_chain ",30735119^30735023-"; psi "0.099500";
chr22	juncbase	jcn_only_AD	20748624	20749623	.	-	.	gene_id "jcn_only_AD.94"; transcript_id "jcn_only_AD.94"; gene_name "CUFF.1975"; flanks "20748624-,20749623-"; structure "1^,2^"; splice_chain "20748624^,20748952^"; psi "0.267900";
chr1	juncbase	jcn_only_AA	2005368	2066701	.	-	.	gene_id "jcn_only_AA.64"; transcript_id "jcn_only_AA.64"; gene_name "CUFF.1975"; flanks "2005368^,2066701^"; structure "1-,2-"; splice_chain "2029786-,2066701-"; psi "0.590900";
chr5	juncbase	intron_retention	139915123	139916974	.	-	.	gene_id "intron_retention.85"; transcript_id "intron_retention.85"; gene_name "CUFF.1975"; flanks "139915123-,139916974^"; structure "0,1^2-"; splice_chain ",139915123^139916974-"; psi "0.795500";
chr9	juncbase	intron_retention	130941268	130941183	.	-	.	gene_id "intron_retention.86"; transcript_id "intron_retention.86"; gene_name "CUFF.1975"; flanks "130941268-,130941183^"; structure "0,1^2-"; splice_chain ",130941268^130941183-"; psi "0.639800";
chrX	juncbase	intron_retention	153607926	153608050	.	-	.	gene_id "intron_retention.87"; transcript_id "intron_retention.87"; gene_name "CUFF.1975"; flanks "153607926-,153608050^"; structure "0,1^2-"; splice_chain ",153607926^153608050-"; psi "0.087700";
chr17	juncbase	cassette	5442735	5437308	.	-	.	gene_id "cassette.81"; transcript_id "cassette.81"; gene_name "CUFF.1975"; flanks "5442735^,5437308-"; structure "0,1-2^"; splice_chain ",5440260-5440171^"; psi "0.563100";
chr22	juncbase	jcn_only_AA	25130051	25124341	.	-	.	gene_id "jcn_only_AA.65"; transcript_id "jcn_only_AA.65"; gene_name "CUFF.1975"; flanks "25130051^,25124341^"; structure "1-,2-"; splice_chain "25124368-,25124341-"; psi "0.196800";
chr1	juncbase	intron_retention	156908941	156908305	.	-	.	gene_id "intron_retention.88"; transcript_id "intron_retention.88"; gene_name "CUFF.1975"; flanks "156908941-,156908305^"; structure "0,1^2-"; splice_chain ",156908941^156908305-"; psi "0.173900";
chr19	juncbase	intron_retention	35642231	35642343	.	-	.	gene_id "intron_retention.89"; transcript_id "intron_retention.89"; gene_name "CUFF.1975"; flanks "35642231-,35642343^"; structure "0,1^2-"; splice_chain ",35642231^35642343-"; psi "0.220300";
chr17	juncbase	intron_retention	79995490	79994889	.	-	.	gene_id "intron_retention.90"; transcript_id "intron_retention.90"; gene_name "CUFF.1975"; flanks "79995490-,79994889^"; structure "0,1^2-"; splice_chain ",79995490^79994889-"; psi "0.795500";
chr9	juncbase	intron_retention	130954134	130953141	.	-	.	gene_id "intron_retention.91"; transcript_id "intron_retention.91"; gene_name "CUFF.1975"; flanks "130954134-,130953141^"; structure "0,1^2-"; splice_chain ",130954134^130953141-"; psi "0.893600";
chr6	juncbase	intron_retention	133055392	133050072	.	-	.	gene_id "intron_retention.92"; transcript_id "intron_retention.92"; gene_name "CUFF.1975"; flanks "133055392-,133050072^"; structure "0,1^2-"; splice_chain ",133055392^133050072-"; psi "0.568900";
chr17	juncbase	jcn_only_AA	1617150	1615693	.	-	.	gene_id "jcn_only_AA.66"; transcript_id "jcn_only_AA.66"; gene_name "CUFF.1975"; flanks "1617150^,1615693^"; structure "1-,2-"; splice_chain "1616189-,1615693-"; psi "0.448653";
chr17	juncbase	jcn_only_AA	1617150	1615940	.	-	.	gene_id "jcn_only_AA.67"; transcript_id "jcn_only_AA.67"; gene_name "CUFF.1975"; flanks "1617150^,1615940^"; structure "1-,2-"; splice_chain "1616189-,1615940-"; psi "0.353268";
chr2	juncbase	cassette	242438054	242437102	.	-	.	gene_id "cassette.82"; transcript_id "cassette.82"; gene_name "CUFF.1975"; flanks "242438054^,242437102-"; structure "0,1-2^"; splice_chain ",242437764-242437650^"; psi "0.638500";
chr19	juncbase	jcn_only_AD	10204489	10204295	.	-	.	gene_id "jcn_only_AD.95"; transcript_id "jcn_only_AD.95"; gene_name "CUFF.1975"; flanks "10204489-,10204295-"; structure "1^,2^"; splice_chain "10204489^,10204369^"; psi "0.076200";
chr17	juncbase	cassette	66274230	66268908	.	-	.	gene_id "cassette.83"; transcript_id "cassette.83"; gene_name "CUFF.1975"; flanks "66274230^,66268908-"; structure "0,1-2^"; splice_chain ",66270211-66270068^"; psi "0.761900";
chr7	juncbase	jcn_only_AD	38902145	38869928	.	-	.	gene_id "jcn_only_AD.96"; transcript_id "jcn_only_AD.96"; gene_name "CUFF.1975"; flanks "38902145-,38869928-"; structure "1^,2^"; splice_chain "38902145^,38870816^"; psi "0.909400";
chr14	juncbase	jcn_only_AD	104216131	104212890	.	-	.	gene_id "jcn_only_AD.97"; transcript_id "jcn_only_AD.97"; gene_name "CUFF.1975"; flanks "104216131-,104212890-"; structure "1^,2^"; splice_chain "104216131^,104212989^"; psi "0.688440";
chr14	juncbase	jcn_only_AD	104213270	104212890	.	-	.	gene_id "jcn_only_AD.98"; transcript_id "jcn_only_AD.98"; gene_name "CUFF.1975"; flanks "104213270-,104212890-"; structure "1^,2^"; splice_chain "104213270^,104212989^"; psi "0.394435";
chr12	juncbase	jcn_only_AD	102874097	102869577	.	-	.	gene_id "jcn_only_AD.99"; transcript_id "jcn_only_AD.99"; gene_name "CUFF.1975"; flanks "102874097-,102869577-"; structure "1^,2^"; splice_chain "102874097^,102872265^"; psi "0.931500";
chr6	juncbase	jcn_only_AA	43481097	43480836	.	-	.	gene_id "jcn_only_AA.68"; transcript_id "jcn_only_AA.68"; gene_name "CUFF.1975"; flanks "43481097^,43480836^"; structure "1-,2-"; splice_chain "43480938-,43480836-"; psi "0.024600";
chr11	juncbase	intron_retention	407425	407164	.	-	.	gene_id "intron_retention.93"; transcript_id "intron_retention.93"; gene_name "CUFF.1975"; flanks "407425-,407164^"; structure "0,1^2-"; splice_chain ",407425^407164-"; psi "0.444200";
chr19	juncbase	jcn_only_AA	17447966	17448817	.	-	.	gene_id "jcn_only_AA.69"; transcript_id "jcn_only_AA.69"; gene_name "CUFF.1975"; flanks "17447966^,17448817^"; structure "1-,2-"; splice_chain "17448683-,17448817-"; psi "0.087000";
chrX	juncbase	jcn_only_AA	53654361	53652219	.	-	.	gene_id "jcn_only_AA.70"; transcript_id "jcn_only_AA.70"; gene_name "CUFF.1975"; flanks "53654361^,53652219^"; structure "1-,2-"; splice_chain "53652989-,53652219-"; psi "0.344800";
chr6	juncbase	jcn_only_AA	5216851	5144496	.	-	.	gene_id "jcn_only_AA.71"; transcript_id "jcn_only_AA.71"; gene_name "CUFF.1975"; flanks "5216851^,5144496^"; structure "1-,2-"; splice_chain "5187214-,5144496-"; psi "0.353238";
chr6	juncbase	jcn_only_AA	5216851	5113651	.	-	.	gene_id "jcn_only_AA.72"; transcript_id "jcn_only_AA.72"; gene_name "CUFF.1975"; flanks "5216851^,5113651^"; structure "1-,2-"; splice_chain "5187214-,5113651-"; psi "0.838987";
chr6	juncbase	jcn_only_AA	5216851	5138973	.	-	.	gene_id "jcn_only_AA.73"; transcript_id "jcn_only_AA.73"; gene_name "CUFF.1975"; flanks "5216851^,5138973^"; structure "1-,2-"; splice_chain "5187214-,5138973-"; psi "0.861666";
chrX	juncbase	cassette	13834963	13803927	.	-	.	gene_id "cassette.84"; transcript_id "cassette.84"; gene_name "CUFF.1975"; flanks "13834963^,13803927-"; structure "0,1-2^"; splice_chain ",13825888-13825769^"; psi "0.386900";
chrX	juncbase	intron_retention	103357937	103358125	.	-	.	gene_id "intron_retention.94"; transcript_id "intron_retention.94"; gene_name "CUFF.1975"; flanks "103357937-,103358125^"; structure "0,1^2-"; splice_chain ",103357937^103358125-"; psi "0.935400";
chr4	juncbase	jcn_only_AA	3949817	3945099	.	-	.	gene_id "jcn_only_AA.74"; transcript_id "jcn_only_AA.74"; gene_name "CUFF.1975"; flanks "3949817^,3945099^"; structure "1-,2-"; splice_chain "3949734-,3945099-"; psi "0.142900";
chr8	juncbase	intron_retention	80962680	80954903	.	-	.	gene_id "intron_retention.95"; transcript_id "intron_retention.95"; gene_name "CUFF.1975"; flanks "80962680-,80954903^"; structure "0,1^2-"; splice_chain ",80962680^80954903-"; psi "0.525800";
chr2	juncbase	cassette	1094096	1133308	.	-	.	gene_id "cassette.85"; transcript_id "cassette.85"; gene_name "CUFF.1975"; flanks "1094096^,1133308-"; structure "0,1-2^"; splice_chain ",1099091-1099128^"; psi "0.564400";
chr19	juncbase	jcn_only_AD	41356152	41355885	.	-	.	gene_id "jcn_only_AD.100"; transcript_id "jcn_only_AD.100"; gene_name "CUFF.1975"; flanks "41356152-,41355885-"; structure "1^,2^"; splice_chain "41356152^,41356142^"; psi "0.077400";
chr12	juncbase	jcn_only_AD	53473095	53471045	.	-	.	gene_id "jcn_only_AD.101"; transcript_id "jcn_only_AD.101"; gene_name "CUFF.1975"; flanks "53473095-,53471045-"; structure "1^,2^"; splice_chain "53473095^,53471845^"; psi "0.931300";
chr3	juncbase	intron_retention	19992553	20017079	.	-	.	gene_id "intron_retention.96"; transcript_id "intron_retention.96"; gene_name "CUFF.1975"; flanks "19992553-,20017079^"; structure "0,1^2-"; splice_chain ",19992553^20017079-"; psi "0.174000";
chr11	juncbase	intron_retention	10821637	10821156	.	-	.	gene_id "intron_retention.97"; transcript_id "intron_retention.97"; gene_name "CUFF.1975"; flanks "10821637-,10821156^"; structure "0,1^2-"; splice_chain ",10821637^10821156-"; psi "0.821100";
chr2	juncbase	intron_retention	242608100	242610141	.	-	.	gene_id "intron_retention.98"; transcript_id "intron_retention.98"; gene_name "CUFF.1975"; flanks "242608100-,242610141^"; structure "0,1^2-"; splice_chain ",242608100^242610141-"; psi "0.088800";
chr11	juncbase	intron_retention	10821099	10820971	.	-	.	gene_id "intron_retention.99"; transcript_id "intron_retention.99"; gene_name "CUFF.1975"; flanks "10821099-,10820971^"; structure "0,1^2-"; splice_chain ",10821099^10820971-"; psi "0.387200";
chr20	juncbase	jcn_only_AA	31099150	31062545	.	-	.	gene_id "jcn_only_AA.75"; transcript_id "jcn_only_AA.75"; gene_name "CUFF.1975"; flanks "31099150^,31062545^"; structure "1-,2-"; splice_chain "31074604-,31062545-"; psi "0.716030";
chr1	juncbase	intron_retention	222802036	222838941	.	-	.	gene_id "intron_retention.100"; transcript_id "intron_retention.100"; gene_name "CUFF.1975"; flanks "222802036-,222838941^"; structure "0,1^2-"; splice_chain ",222802036^222838941-"; psi "0.659100";
chr17	juncbase	cassette	29490394	29508440	.	-	.	gene_id "cassette.86"; transcript_id "cassette.86"; gene_name "CUFF.1975"; flanks "29490394^,29508440-"; structure "0,1-2^"; splice_chain ",29496909-29497015^"; psi "0.824100";
chr15	juncbase	intron_retention	33022995	33023117	.	-	.	gene_id "intron_retention.101"; transcript_id "intron_retention.101"; gene_name "CUFF.1975"; flanks "33022995-,33023117^"; structure "0,1^2-"; splice_chain ",33022995^33023117-"; psi "0.571400";
chr17	juncbase	intron_retention	79895056	79894737	.	-	.	gene_id "intron_retention.102"; transcript_id "intron_retention.102"; gene_name "CUFF.1975"; flanks "79895056-,79894737^"; structure "0,1^2-"; splice_chain ",79895056^79894737-"; psi "0.905900";
chr11	juncbase	jcn_only_AD	57310814	57311097	.	-	.	gene_id "jcn_only_AD.102"; transcript_id "jcn_only_AD.102"; gene_name "CUFF.1975"; flanks "57310814-,57311097-"; structure "1^,2^"; splice_chain "57310814^,57310847^"; psi "0.022700";
chr2	juncbase	jcn_only_AD	110958998	110927575	.	-	.	gene_id "jcn_only_AD.103"; transcript_id "jcn_only_AD.103"; gene_name "CUFF.1975"; flanks "110958998-,110927575-"; structure "1^,2^"; splice_chain "110958998^,110936000^"; psi "0.673400";
chr22	juncbase	cassette	47158745	47188417	.	-	.	gene_id "cassette.87"; transcript_id "cassette.87"; gene_name "CUFF.1975"; flanks "47158745^,47188417-"; structure "0,1-2^"; splice_chain ",47185209-47185368^"; psi "0.282800";
chr17	juncbase	jcn_only_AD	79481573	79479386	.	-	.	gene_id "jcn_only_AD.104"; transcript_id "jcn_only_AD.104"; gene_name "CUFF.1975"; flanks "79481573-,79479386-"; structure "1^,2^"; splice_chain "79481573^,79479632^"; psi "0.832911";
chr17	juncbase	jcn_only_AD	79490668	79479386	.	-	.	gene_id "jcn_only_AD.105"; transcript_id "jcn_only_AD.105"; gene_name "CUFF.1975"; flanks "79490668-,79479386-"; structure "1^,2^"; splice_chain "79490668^,79479632^"; psi "0.981763";
chr17	juncbase	jcn_only_AD	79479760	79479386	.	-	.	gene_id "jcn_only_AD.106"; transcript_id "jcn_only_AD.106"; gene_name "CUFF.1975"; flanks "79479760-,79479386-"; structure "1^,2^"; splice_chain "79479760^,79479632^"; psi "0.987564";
chr17	juncbase	jcn_only_AD	79479641	79479386	.	-	.	gene_id "jcn_only_AD.107"; transcript_id "jcn_only_AD.107"; gene_name "CUFF.1975"; flanks "79479641-,79479386-"; structure "1^,2^"; splice_chain "79479641^,79479632^"; psi "0.884413";
chr10	juncbase	jcn_only_AA	6259154	6261532	.	-	.	gene_id "jcn_only_AA.76"; transcript_id "jcn_only_AA.76"; gene_name "CUFF.1975"; flanks "6259154^,6261532^"; structure "1-,2-"; splice_chain "6261482-,6261532-"; psi "0.990900";
chr12	juncbase	jcn_only_AA	53853187	53854799	.	-	.	gene_id "jcn_only_AA.77"; transcript_id "jcn_only_AA.77"; gene_name "CUFF.1975"; flanks "53853187^,53854799^"; structure "1-,2-"; splice_chain "53854115-,53854799-"; psi "0.776339";
chr11	juncbase	intron_retention	830337	830621	.	-	.	gene_id "intron_retention.103"; transcript_id "intron_retention.103"; gene_name "CUFF.1975"; flanks "830337-,830621^"; structure "0,1^2-"; splice_chain ",830337^830621-"; psi "0.201900";
chr1	juncbase	jcn_only_AA	2101043	2103494	.	-	.	gene_id "jcn_only_AA.78"; transcript_id "jcn_only_AA.78"; gene_name "CUFF.1975"; flanks "2101043^,2103494^"; structure "1-,2-"; splice_chain "2102992-,2103494-"; psi "0.917500";
chr4	juncbase	intron_retention	165675327	165675463	.	-	.	gene_id "intron_retention.104"; transcript_id "intron_retention.104"; gene_name "CUFF.1975"; flanks "165675327-,165675463^"; structure "0,1^2-"; splice_chain ",165675327^165675463-"; psi "0.804300";
chr14	juncbase	jcn_only_AD	75152303	75150236	.	-	.	gene_id "jcn_only_AD.108"; transcript_id "jcn_only_AD.108"; gene_name "CUFF.1975"; flanks "75152303-,75150236-"; structure "1^,2^"; splice_chain "75152303^,75151157^"; psi "0.494600";
chr16	juncbase	cassette	3117614	3118181	.	-	.	gene_id "cassette.88"; transcript_id "cassette.88"; gene_name "CUFF.1975"; flanks "3117614^,3118181-"; structure "0,1-2^"; splice_chain ",3117985-3118011^"; psi "0.969800";
chr16	juncbase	cassette	3117416	3118181	.	-	.	gene_id "cassette.89"; transcript_id "cassette.89"; gene_name "CUFF.1975"; flanks "3117416^,3118181-"; structure "0,1-2^"; splice_chain ",3117985-3118011^"; psi "0.969800";
chr19	juncbase	cassette	51537236	51534177	.	-	.	gene_id "cassette.90"; transcript_id "cassette.90"; gene_name "CUFF.1975"; flanks "51537236^,51534177-"; structure "0,1-2^"; splice_chain ",51535391-51535036^"; psi "0.385600";
chr17	juncbase	cassette	15611561	15638244	.	-	.	gene_id "cassette.91"; transcript_id "cassette.91"; gene_name "CUFF.1975"; flanks "15611561^,15638244-"; structure "0,1-2^"; splice_chain ",15619373-15620627^"; psi "0.500000";
chr15	juncbase	jcn_only_AA	40756746	40757543	.	-	.	gene_id "jcn_only_AA.79"; transcript_id "jcn_only_AA.79"; gene_name "CUFF.1975"; flanks "40756746^,40757543^"; structure "1-,2-"; splice_chain "40757534-,40757543-"; psi "0.567200";
chrX	juncbase	cassette	46387770	46360770	.	-	.	gene_id "cassette.92"; transcript_id "cassette.92"; gene_name "CUFF.1975"; flanks "46387770^,46360770-"; structure "0,1-2^"; splice_chain ",46382560-46382372^"; psi "0.927700";
chr9	juncbase	cassette	35396934	35397632	.	-	.	gene_id "cassette.93"; transcript_id "cassette.93"; gene_name "CUFF.1975"; flanks "35396934^,35397632-"; structure "0,1-2^"; splice_chain ",35397164-35397307^"; psi "0.928600";
chrX	juncbase	intron_retention	15349712	15343274	.	-	.	gene_id "intron_retention.105"; transcript_id "intron_retention.105"; gene_name "CUFF.1975"; flanks "15349712-,15343274^"; structure "0,1^2-"; splice_chain ",15349712^15343274-"; psi "0.183000";
chr17	juncbase	intron_retention	1616997	1616349	.	-	.	gene_id "intron_retention.106"; transcript_id "intron_retention.106"; gene_name "CUFF.1975"; flanks "1616997-,1616349^"; structure "0,1^2-"; splice_chain ",1616997^1616349-"; psi "0.610100";
chr19	juncbase	cassette	49316920	49316605	.	-	.	gene_id "cassette.94"; transcript_id "cassette.94"; gene_name "CUFF.1975"; flanks "49316920^,49316605-"; structure "0,1-2^"; splice_chain ",49316809-49316713^"; psi "0.488600";
chr8	juncbase	jcn_only_AA	56663523	56652777	.	-	.	gene_id "jcn_only_AA.80"; transcript_id "jcn_only_AA.80"; gene_name "CUFF.1975"; flanks "56663523^,56652777^"; structure "1-,2-"; splice_chain "56656179-,56652777-"; psi "0.234004";
chr8	juncbase	jcn_only_AA	56663523	56637818	.	-	.	gene_id "jcn_only_AA.81"; transcript_id "jcn_only_AA.81"; gene_name "CUFF.1975"; flanks "56663523^,56637818^"; structure "1-,2-"; splice_chain "56656179-,56637818-"; psi "0.898177";
chr11	juncbase	intron_retention	10825446	10825137	.	-	.	gene_id "intron_retention.107"; transcript_id "intron_retention.107"; gene_name "CUFF.1975"; flanks "10825446-,10825137^"; structure "0,1^2-"; splice_chain ",10825446^10825137-"; psi "0.113600";
chr3	juncbase	jcn_only_AA	133407208	133419726	.	-	.	gene_id "jcn_only_AA.82"; transcript_id "jcn_only_AA.82"; gene_name "CUFF.1975"; flanks "133407208^,133419726^"; structure "1-,2-"; splice_chain "133418749-,133419726-"; psi "0.590453";
chr9	juncbase	jcn_only_AD	131008782	131009654	.	-	.	gene_id "jcn_only_AD.109"; transcript_id "jcn_only_AD.109"; gene_name "CUFF.1975"; flanks "131008782-,131009654-"; structure "1^,2^"; splice_chain "131008782^,131009402^"; psi "0.989000";
chr1	juncbase	jcn_only_AA	78546544	78560636	.	-	.	gene_id "jcn_only_AA.83"; transcript_id "jcn_only_AA.83"; gene_name "CUFF.1975"; flanks "78546544^,78560636^"; structure "1-,2-"; splice_chain "78558441-,78560636-"; psi "0.040000";
chr6	juncbase	jcn_only_AA	31939706	31938924	.	-	.	gene_id "jcn_only_AA.84"; transcript_id "jcn_only_AA.84"; gene_name "CUFF.1975"; flanks "31939706^,31938924^"; structure "1-,2-"; splice_chain "31939502-,31938924-"; psi "0.163306";
chr6	juncbase	jcn_only_AA	31939706	31939458	.	-	.	gene_id "jcn_only_AA.85"; transcript_id "jcn_only_AA.85"; gene_name "CUFF.1975"; flanks "31939706^,31939458^"; structure "1-,2-"; splice_chain "31939502-,31939458-"; psi "0.338686";
chr6	juncbase	jcn_only_AA	31939706	31939358	.	-	.	gene_id "jcn_only_AA.86"; transcript_id "jcn_only_AA.86"; gene_name "CUFF.1975"; flanks "31939706^,31939358^"; structure "1-,2-"; splice_chain "31939502-,31939358-"; psi "0.127587";
chr17	juncbase	jcn_only_AA	80442806	80446097	.	-	.	gene_id "jcn_only_AA.87"; transcript_id "jcn_only_AA.87"; gene_name "CUFF.1975"; flanks "80442806^,80446097^"; structure "1-,2-"; splice_chain "80443373-,80446097-"; psi "0.142900";
chr22	juncbase	intron_retention	20755048	20755567	.	-	.	gene_id "intron_retention.108"; transcript_id "intron_retention.108"; gene_name "CUFF.1975"; flanks "20755048-,20755567^"; structure "0,1^2-"; splice_chain ",20755048^20755567-"; psi "0.266700";
chr11	juncbase	intron_retention	118402548	118403063	.	-	.	gene_id "intron_retention.109"; transcript_id "intron_retention.109"; gene_name "CUFF.1975"; flanks "118402548-,118403063^"; structure "0,1^2-"; splice_chain ",118402548^118403063-"; psi "0.724400";
chr17	juncbase	intron_retention	40739852	40738909	.	-	.	gene_id "intron_retention.110"; transcript_id "intron_retention.110"; gene_name "CUFF.1975"; flanks "40739852-,40738909^"; structure "0,1^2-"; splice_chain ",40739852^40738909-"; psi "0.260000";
chr8	juncbase	jcn_only_AD	22014509	22012976	.	-	.	gene_id "jcn_only_AD.110"; transcript_id "jcn_only_AD.110"; gene_name "CUFF.1975"; flanks "22014509-,22012976-"; structure "1^,2^"; splice_chain "22014509^,22013850^"; psi "0.606800";
chr2	juncbase	jcn_only_AD	242436715	242435949	.	-	.	gene_id "jcn_only_AD.111"; transcript_id "jcn_only_AD.111"; gene_name "CUFF.1975"; flanks "242436715-,242435949-"; structure "1^,2^"; splice_chain "242436715^,242436597^"; psi "0.233463";
chr2	juncbase	jcn_only_AD	242437031	242435949	.	-	.	gene_id "jcn_only_AD.112"; transcript_id "jcn_only_AD.112"; gene_name "CUFF.1975"; flanks "242437031-,242435949-"; structure "1^,2^"; splice_chain "242437031^,242436597^"; psi "0.939823";
chr18	juncbase	jcn_only_AA	4946881	4775122	.	-	.	gene_id "jcn_only_AA.88"; transcript_id "jcn_only_AA.88"; gene_name "CUFF.1975"; flanks "4946881^,4775122^"; structure "1-,2-"; splice_chain "4807994-,4775122-"; psi "0.693200";
chr7	juncbase	jcn_only_AA	156589083	156556489	.	-	.	gene_id "jcn_only_AA.89"; transcript_id "jcn_only_AA.89"; gene_name "CUFF.1975"; flanks "156589083^,156556489^"; structure "1-,2-"; splice_chain "156572426-,156556489-"; psi "0.964500";
chr11	juncbase	intron_retention	118927743	118927716	.	-	.	gene_id "intron_retention.111"; transcript_id "intron_retention.111"; gene_name "CUFF.1975"; flanks "118927743-,118927716^"; structure "0,1^2-"; splice_chain ",118927743^118927716-"; psi "0.983300";
chr15	juncbase	jcn_only_AA	84898604	84873727	.	-	.	gene_id "jcn_only_AA.90"; transcript_id "jcn_only_AA.90"; gene_name "CUFF.1975"; flanks "84898604^,84873727^"; structure "1-,2-"; splice_chain "84874071-,84873727-"; psi "0.193500";
chr11	juncbase	jcn_only_AA	8502081	8496363	.	-	.	gene_id "jcn_only_AA.91"; transcript_id "jcn_only_AA.91"; gene_name "CUFF.1975"; flanks "8502081^,8496363^"; structure "1-,2-"; splice_chain "8498830-,8496363-"; psi "0.273338";
chr11	juncbase	jcn_only_AA	8502081	8496613	.	-	.	gene_id "jcn_only_AA.92"; transcript_id "jcn_only_AA.92"; gene_name "CUFF.1975"; flanks "8502081^,8496613^"; structure "1-,2-"; splice_chain "8498830-,8496613-"; psi "0.500000";
chr6	juncbase	jcn_only_AA	31927177	31928818	.	-	.	gene_id "jcn_only_AA.93"; transcript_id "jcn_only_AA.93"; gene_name "CUFF.1975"; flanks "31927177^,31928818^"; structure "1-,2-"; splice_chain "31927787-,31928818-"; psi "0.062800";
chr22	juncbase	intron_retention	20748952	20754922	.	-	.	gene_id "intron_retention.112"; transcript_id "intron_retention.112"; gene_name "CUFF.1975"; flanks "20748952-,20754922^"; structure "0,1^2-"; splice_chain ",20748952^20754922-"; psi "0.555600";
chr14	juncbase	jcn_only_AA	105054646	105054959	.	-	.	gene_id "jcn_only_AA.94"; transcript_id "jcn_only_AA.94"; gene_name "CUFF.1975"; flanks "105054646^,105054959^"; structure "1-,2-"; splice_chain "105054915-,105054959-"; psi "0.182200";
chr3	juncbase	cassette	57570111	57563114	.	-	.	gene_id "cassette.95"; transcript_id "cassette.95"; gene_name "CUFF.1975"; flanks "57570111^,57563114-"; structure "0,1-2^"; splice_chain ",57569759-57569625^"; psi "0.826100";
chr20	juncbase	jcn_only_AD	30135409	30136480	.	-	.	gene_id "jcn_only_AD.113"; transcript_id "jcn_only_AD.113"; gene_name "CUFF.1975"; flanks "30135409-,30136480-"; structure "1^,2^"; splice_chain "30135409^,30135495^"; psi "0.684800";
chr13	juncbase	jcn_only_AA	21179244	21189932	.	-	.	gene_id "jcn_only_AA.95"; transcript_id "jcn_only_AA.95"; gene_name "CUFF.1975"; flanks "21179244^,21189932^"; structure "1-,2-"; splice_chain "21188496-,21189932-"; psi "0.575200";
chr11	juncbase	cassette	67786724	67788954	.	-	.	gene_id "cassette.96"; transcript_id "cassette.96"; gene_name "CUFF.1975"; flanks "67786724^,67788954-"; structure "0,1-2^"; splice_chain ",67787184-67787265^"; psi "0.864900";
chr17	juncbase	intron_retention	79994290	79994184	.	-	.	gene_id "intron_retention.113"; transcript_id "intron_retention.113"; gene_name "CUFF.1975"; flanks "79994290-,79994184^"; structure "0,1^2-"; splice_chain ",79994290^79994184-"; psi "0.856100";
chr14	juncbase	cassette	61497241	61504343	.	-	.	gene_id "cassette.97"; transcript_id "cassette.97"; gene_name "CUFF.1975"; flanks "61497241^,61504343-"; structure "0,1-2^"; splice_chain ",61503777-61503859^"; psi "0.707000";
chr3	juncbase	jcn_only_AD	133407208	133419726	.	-	.	gene_id "jcn_only_AD.114"; transcript_id "jcn_only_AD.114"; gene_name "CUFF.1975"; flanks "133407208-,133419726-"; structure "1^,2^"; splice_chain "133407208^,133418467^"; psi "0.789800";
chr2	juncbase	jcn_only_AD	16535568	16573521	.	-	.	gene_id "jcn_only_AD.115"; transcript_id "jcn_only_AD.115"; gene_name "CUFF.1975"; flanks "16535568-,16573521-"; structure "1^,2^"; splice_chain "16535568^,16536535^"; psi "0.902500";
chr1	juncbase	cassette	153921591	153921120	.	-	.	gene_id "cassette.98"; transcript_id "cassette.98"; gene_name "CUFF.1975"; flanks "153921591^,153921120-"; structure "0,1-2^"; splice_chain ",153921376-153921310^"; psi "0.298200";
chr6	juncbase	cassette	32121413	32122364	.	-	.	gene_id "cassette.99"; transcript_id "cassette.99"; gene_name "CUFF.1975"; flanks "32121413^,32122364-"; structure "0,1-2^"; splice_chain ",32121973-32122181^"; psi "0.313700";
chr19	juncbase	jcn_only_AD	45254637	45259489	.	-	.	gene_id "jcn_only_AD.116"; transcript_id "jcn_only_AD.116"; gene_name "CUFF.1975"; flanks "45254637-,45259489-"; structure "1^,2^"; splice_chain "45254637^,45258731^"; psi "0.892000";
chr11	juncbase	cassette	414823	408206	.	-	.	gene_id "cassette.100"; transcript_id "cassette.100"; gene_name "CUFF.1975"; flanks "414823^,408206-"; structure "0,1-2^"; splice_chain ",408893-408695^"; psi "0.547600";
chr11	juncbase	cassette	409868	408206	.	-	.	gene_id "cassette.101"; transcript_id "cassette.101"; gene_name "CUFF.1975"; flanks "409868^,408206-"; structure "0,1-2^"; splice_chain ",408893-408695^"; psi "0.547600";
chr11	juncbase	intron_retention	63999436	63999866	.	-	.	gene_id "intron_retention.114"; transcript_id "intron_retention.114"; gene_name "CUFF.1975"; flanks "63999436-,63999866^"; structure "0,1^2-"; splice_chain ",63999436^63999866-"; psi "0.635800";
chr8	juncbase	jcn_only_AD	106646585	106800946	.	-	.	gene_id "jcn_only_AD.117"; transcript_id "jcn_only_AD.117"; gene_name "CUFF.1975"; flanks "106646585-,106800946-"; structure "1^,2^"; splice_chain "106646585^,106703163^"; psi "0.953500";
chr10	juncbase	cassette	135061295	135060554	.	-	.	gene_id "cassette.102"; transcript_id "cassette.102"; gene_name "CUFF.1975"; flanks "135061295^,135060554-"; structure "0,1-2^"; splice_chain ",135061205-135061058^"; psi "0.947200";
chr17	juncbase	jcn_only_AD	80436794	80438958	.	-	.	gene_id "jcn_only_AD.118"; transcript_id "jcn_only_AD.118"; gene_name "CUFF.1975"; flanks "80436794-,80438958-"; structure "1^,2^"; splice_chain "80436794^,80438420^"; psi "0.988000";
chr13	juncbase	jcn_only_AD	78493532	78492759	.	-	.	gene_id "jcn_only_AD.119"; transcript_id "jcn_only_AD.119"; gene_name "CUFF.1975"; flanks "78493532-,78492759-"; structure "1^,2^"; splice_chain "78493532^,78493142^"; psi "0.195700";
chr16	juncbase	intron_retention	57513757	57513597	.	-	.	gene_id "intron_retention.115"; transcript_id "intron_retention.115"; gene_name "CUFF.1975"; flanks "57513757-,57513597^"; structure "0,1^2-"; splice_chain ",57513757^57513597-"; psi "0.604000";
chr6	juncbase	jcn_only_AD	90338942	90340152	.	-	.	gene_id "jcn_only_AD.120"; transcript_id "jcn_only_AD.120"; gene_name "CUFF.1975"; flanks "90338942-,90340152-"; structure "1^,2^"; splice_chain "90338942^,90338957^"; psi "0.413800";
chr11	juncbase	jcn_only_AA	10821791	10821303	.	-	.	gene_id "jcn_only_AA.96"; transcript_id "jcn_only_AA.96"; gene_name "CUFF.1975"; flanks "10821791^,10821303^"; structure "1-,2-"; splice_chain "10821715-,10821303-"; psi "0.897700";
chr17	juncbase	intron_retention	1939385	1939823	.	-	.	gene_id "intron_retention.116"; transcript_id "intron_retention.116"; gene_name "CUFF.1975"; flanks "1939385-,1939823^"; structure "0,1^2-"; splice_chain ",1939385^1939823-"; psi "0.160800";
chr19	juncbase	jcn_only_AA	54648068	54649334	.	-	.	gene_id "jcn_only_AA.97"; transcript_id "jcn_only_AA.97"; gene_name "CUFF.1975"; flanks "54648068^,54649334^"; structure "1-,2-"; splice_chain "54649331-,54649334-"; psi "0.760025";
chr17	juncbase	jcn_only_AD	29706041	29708891	.	-	.	gene_id "jcn_only_AD.121"; transcript_id "jcn_only_AD.121"; gene_name "CUFF.1975"; flanks "29706041-,29708891-"; structure "1^,2^"; splice_chain "29706041^,29706375^"; psi "0.520825";
chr1	juncbase	intron_retention	153925281	153925126	.	-	.	gene_id "intron_retention.117"; transcript_id "intron_retention.117"; gene_name "CUFF.1975"; flanks "153925281-,153925126^"; structure "0,1^2-"; splice_chain ",153925281^153925126-"; psi "0.132200";
chr18	juncbase	cassette	56001124	56008910	.	-	.	gene_id "cassette.103"; transcript_id "cassette.103"; gene_name "CUFF.1975"; flanks "56001124^,56008910-"; structure "0,1-2^"; splice_chain ",56008270-56008401^"; psi "0.921200";
chr8	juncbase	intron_retention	56676196	56675587	.	-	.	gene_id "intron_retention.118"; transcript_id "intron_retention.118"; gene_name "CUFF.1975"; flanks "56676196-,56675587^"; structure "0,1^2-"; splice_chain ",56676196^56675587-"; psi "0.525300";
chr13	juncbase	jcn_only_AD	21179244	21189932	.	-	.	gene_id "jcn_only_AD.122"; transcript_id "jcn_only_AD.122"; gene_name "CUFF.1975"; flanks "21179244-,21189932-"; structure "1^,2^"; splice_chain "21179244^,21188574^"; psi "0.698900";
chr6	juncbase	intron_retention	33243434	33243574	.	-	.	gene_id "intron_retention.119"; transcript_id "intron_retention.119"; gene_name "CUFF.1975"; flanks "33243434-,33243574^"; structure "0,1^2-"; splice_chain ",33243434^33243574-"; psi "0.064900";
chr19	juncbase	cassette	18118180	18119520	.	-	.	gene_id "cassette.104"; transcript_id "cassette.104"; gene_name "CUFF.1975"; flanks "18118180^,18119520-"; structure "0,1-2^"; splice_chain ",18118399-18118651^"; psi "0.979700";
chr5	juncbase	intron_retention	178045557	178044435	.	-	.	gene_id "intron_retention.120"; transcript_id "intron_retention.120"; gene_name "CUFF.1975"; flanks "178045557-,178044435^"; structure "0,1^2-"; splice_chain ",178045557^178044435-"; psi "0.418600";
chr16	juncbase	jcn_only_AD	67234709	67234793	.	-	.	gene_id "jcn_only_AD.123"; transcript_id "jcn_only_AD.123"; gene_name "CUFF.1975"; flanks "67234709-,67234793-"; structure "1^,2^"; splice_chain "67234709^,67234711^"; psi "0.796500";
chr22	juncbase	intron_retention	51007765	51007510	.	-	.	gene_id "intron_retention.121"; transcript_id "intron_retention.121"; gene_name "CUFF.1975"; flanks "51007765-,51007510^"; structure "0,1^2-"; splice_chain ",51007765^51007510-"; psi "0.143800";
chr7	juncbase	intron_retention	100771764	100771810	.	-	.	gene_id "intron_retention.122"; transcript_id "intron_retention.122"; gene_name "CUFF.1975"; flanks "100771764-,100771810^"; structure "0,1^2-"; splice_chain ",100771764^100771810-"; psi "0.481500";
chr19	juncbase	jcn_only_AA	20349097	20287618	.	-	.	gene_id "jcn_only_AA.98"; transcript_id "jcn_only_AA.98"; gene_name "CUFF.1975"; flanks "20349097^,20287618^"; structure "1-,2-"; splice_chain "20339292-,20287618-"; psi "0.274485";
chr19	juncbase	jcn_only_AA	20349097	20243396	.	-	.	gene_id "jcn_only_AA.99"; transcript_id "jcn_only_AA.99"; gene_name "CUFF.1975"; flanks "20349097^,20243396^"; structure "1-,2-"; splice_chain "20339292-,20243396-"; psi "0.531669";
chrX	juncbase	cassette	153607926	153608302	.	-	.	gene_id "cassette.105"; transcript_id "cassette.105"; gene_name "CUFF.1975"; flanks "153607926^,153608302-"; structure "0,1-2^"; splice_chain ",153608050-153608154^"; psi "0.171600";
chr11	juncbase	intron_retention	119058853	119059064	.	-	.	gene_id "intron_retention.123"; transcript_id "intron_retention.123"; gene_name "CUFF.1975"; flanks "119058853-,119059064^"; structure "0,1^2-"; splice_chain ",119058853^119059064-"; psi "0.120700";
chr1	juncbase	cassette	54360220	54375604	.	-	.	gene_id "cassette.106"; transcript_id "cassette.106"; gene_name "CUFF.1975"; flanks "54360220^,54375604-"; structure "0,1-2^"; splice_chain ",54370339-54370482^"; psi "0.852200";
chr1	juncbase	cassette	54360220	54371768	.	-	.	gene_id "cassette.107"; transcript_id "cassette.107"; gene_name "CUFF.1975"; flanks "54360220^,54371768-"; structure "0,1-2^"; splice_chain ",54370339-54370482^"; psi "0.852200";
chr5	juncbase	jcn_only_AA	139865317	139866591	.	-	.	gene_id "jcn_only_AA.100"; transcript_id "jcn_only_AA.100"; gene_name "CUFF.1975"; flanks "139865317^,139866591^"; structure "1-,2-"; splice_chain "139866543-,139866591-"; psi "0.214300";
chr11	juncbase	jcn_only_AA	67766989	67766775	.	-	.	gene_id "jcn_only_AA.101"; transcript_id "jcn_only_AA.101"; gene_name "CUFF.1975"; flanks "67766989^,67766775^"; structure "1-,2-"; splice_chain "67766845-,67766775-"; psi "0.950100";
chr12	juncbase	intron_retention	56558432	56558152	.	-	.	gene_id "intron_retention.124"; transcript_id "intron_retention.124"; gene_name "CUFF.1975"; flanks "56558432-,56558152^"; structure "0,1^2-"; splice_chain ",56558432^56558152-"; psi "0.741100";
chr6	juncbase	intron_retention	32122171	32122364	.	-	.	gene_id "intron_retention.125"; transcript_id "intron_retention.125"; gene_name "CUFF.1975"; flanks "32122171-,32122364^"; structure "0,1^2-"; splice_chain ",32122171^32122364-"; psi "0.190500";
chr17	juncbase	jcn_only_AA	61564434	61566009	.	-	.	gene_id "jcn_only_AA.102"; transcript_id "jcn_only_AA.102"; gene_name "CUFF.1975"; flanks "61564434^,61566009^"; structure "1-,2-"; splice_chain "61565931-,61566009-"; psi "0.811500";
chr7	juncbase	jcn_only_AA	73101230	73106926	.	-	.	gene_id "jcn_only_AA.103"; transcript_id "jcn_only_AA.103"; gene_name "CUFF.1975"; flanks "73101230^,73106926^"; structure "1-,2-"; splice_chain "73105246-,73106926-"; psi "0.410247";
chr8	juncbase	jcn_only_AD	75233823	75272372	.	-	.	gene_id "jcn_only_AD.124"; transcript_id "jcn_only_AD.124"; gene_name "CUFF.1975"; flanks "75233823-,75272372-"; structure "1^,2^"; splice_chain "75233823^,75263556^"; psi "0.460758";
chr8	juncbase	jcn_only_AD	75233480	75272372	.	-	.	gene_id "jcn_only_AD.125"; transcript_id "jcn_only_AD.125"; gene_name "CUFF.1975"; flanks "75233480-,75272372-"; structure "1^,2^"; splice_chain "75233480^,75263556^"; psi "0.375835";
chr8	juncbase	jcn_only_AD	75262813	75272372	.	-	.	gene_id "jcn_only_AD.126"; transcript_id "jcn_only_AD.126"; gene_name "CUFF.1975"; flanks "75262813-,75272372-"; structure "1^,2^"; splice_chain "75262813^,75263556^"; psi "0.232000";
chr2	juncbase	jcn_only_AD	48757127	48807726	.	-	.	gene_id "jcn_only_AD.127"; transcript_id "jcn_only_AD.127"; gene_name "CUFF.1975"; flanks "48757127-,48807726-"; structure "1^,2^"; splice_chain "48757127^,48796225^"; psi "0.852300";
chr2	juncbase	cassette	99232809	99234631	.	-	.	gene_id "cassette.108"; transcript_id "cassette.108"; gene_name "CUFF.1975"; flanks "99232809^,99234631-"; structure "0,1-2^"; splice_chain ",99232895-99232996^"; psi "0.916700";
chr18	juncbase	jcn_only_AD	55912740	55916131	.	-	.	gene_id "jcn_only_AD.128"; transcript_id "jcn_only_AD.128"; gene_name "CUFF.1975"; flanks "55912740-,55916131-"; structure "1^,2^"; splice_chain "55912740^,55914856^"; psi "0.958800";
chr11	juncbase	cassette	67782929	67786242	.	-	.	gene_id "cassette.109"; transcript_id "cassette.109"; gene_name "CUFF.1975"; flanks "67782929^,67786242-"; structure "0,1-2^"; splice_chain ",67785997-67786106^"; psi "0.970600";
chr7	juncbase	cassette	91609647	91622199	.	-	.	gene_id "cassette.110"; transcript_id "cassette.110"; gene_name "CUFF.1975"; flanks "91609647^,91622199-"; structure "0,1-2^"; splice_chain ",91621472-91621525^"; psi "0.180300";
chr11	juncbase	intron_retention	62365082	62364887	.	-	.	gene_id "intron_retention.126"; transcript_id "intron_retention.126"; gene_name "CUFF.1975"; flanks "62365082-,62364887^"; structure "0,1^2-"; splice_chain ",62365082^62364887-"; psi "0.305900";
chr12	juncbase	cassette	48398020	48392214	.	-	.	gene_id "cassette.111"; transcript_id "cassette.111"; gene_name "CUFF.1975"; flanks "48398020^,48392214-"; structure "0,1-2^"; splice_chain ",48393908-48393702^"; psi "0.769200";
chr16	juncbase	cassette	70390150	70398446	.	-	.	gene_id "cassette.112"; transcript_id "cassette.112"; gene_name "CUFF.1975"; flanks "70390150^,70398446-"; structure "0,1-2^"; splice_chain ",70395321-70395413^"; psi "0.851100";
chr14	juncbase	intron_retention	24683516	24683357	.	-	.	gene_id "intron_retention.127"; transcript_id "intron_retention.127"; gene_name "CUFF.1975"; flanks "24683516-,24683357^"; structure "0,1^2-"; splice_chain ",24683516^24683357-"; psi "0.450000";
chr10	juncbase	jcn_only_AA	79397023	79163781	.	-	.	gene_id "jcn_only_AA.104"; transcript_id "jcn_only_AA.104"; gene_name "CUFF.1975"; flanks "79397023^,79163781^"; structure "1-,2-"; splice_chain "79396273-,79163781-"; psi "0.464669";
chr17	juncbase	cassette	29576137	29585362	.	-	.	gene_id "cassette.113"; transcript_id "cassette.113"; gene_name "CUFF.1975"; flanks "29576137^,29585362-"; structure "0,1-2^"; splice_chain ",29584705-29584744^"; psi "0.895500";
chr2	juncbase	jcn_only_AA	3405664	3425652	.	-	.	gene_id "jcn_only_AA.105"; transcript_id "jcn_only_AA.105"; gene_name "CUFF.1975"; flanks "3405664^,3425652^"; structure "1-,2-"; splice_chain "3425471-,3425652-"; psi "0.604900";
chr2	juncbase	jcn_only_AD	46844109	46842324	.	-	.	gene_id "jcn_only_AD.129"; transcript_id "jcn_only_AD.129"; gene_name "CUFF.1975"; flanks "46844109-,46842324-"; structure "1^,2^"; splice_chain "46844109^,46843726^"; psi "0.950900";
chr1	juncbase	cassette	54360220	54370339	.	-	.	gene_id "cassette.114"; transcript_id "cassette.114"; gene_name "CUFF.1975"; flanks "54360220^,54370339-"; structure "0,1-2^"; splice_chain ",54368730-54368939^"; psi "0.125100";
chr14	juncbase	jcn_only_AA	61512885	61514966	.	-	.	gene_id "jcn_only_AA.106"; transcript_id "jcn_only_AA.106"; gene_name "CUFF.1975"; flanks "61512885^,61514966^"; structure "1-,2-"; splice_chain "61514869-,61514966-"; psi "0.208984";
chr14	juncbase	jcn_only_AA	61512885	61517230	.	-	.	gene_id "jcn_only_AA.107"; transcript_id "jcn_only_AA.107"; gene_name "CUFF.1975"; flanks "61512885^,61517230^"; structure "1-,2-"; splice_chain "61514869-,61517230-"; psi "0.734154";
chr1	juncbase	intron_retention	200883187	200883602	.	-	.	gene_id "intron_retention.128"; transcript_id "intron_retention.128"; gene_name "CUFF.1975"; flanks "200883187-,200883602^"; structure "0,1^2-"; splice_chain ",200883187^200883602-"; psi "0.346200";
chr11	juncbase	jcn_only_AA	75524648	75522581	.	-	.	gene_id "jcn_only_AA.108"; transcript_id "jcn_only_AA.108"; gene_name "CUFF.1975"; flanks "75524648^,75522581^"; structure "1-,2-"; splice_chain "75522614-,75522581-"; psi "0.540400";
chr4	juncbase	intron_retention	2933282	2932877	.	-	.	gene_id "intron_retention.129"; transcript_id "intron_retention.129"; gene_name "CUFF.1975"; flanks "2933282-,2932877^"; structure "0,1^2-"; splice_chain ",2933282^2932877-"; psi "0.907400";
chr3	juncbase	cassette	141820577	141724386	.	-	.	gene_id "cassette.115"; transcript_id "cassette.115"; gene_name "CUFF.1975"; flanks "141820577^,141724386-"; structure "0,1-2^"; splice_chain ",141811969-141811903^"; psi "0.861000";
chr19	juncbase	jcn_only_AA	44771114	44777458	.	-	.	gene_id "jcn_only_AA.109"; transcript_id "jcn_only_AA.109"; gene_name "CUFF.1975"; flanks "44771114^,44777458^"; structure "1-,2-"; splice_chain "44777052-,44777458-"; psi "0.455882";
chr3	juncbase	jcn_only_AA	120400944	120394710	.	-	.	gene_id "jcn_only_AA.110"; transcript_id "jcn_only_AA.110"; gene_name "CUFF.1975"; flanks "120400944^,120394710^"; structure "1-,2-"; splice_chain "120396876-,120394710-"; psi "0.881097";
chr3	juncbase	jcn_only_AA	120400944	120396838	.	-	.	gene_id "jcn_only_AA.111"; transcript_id "jcn_only_AA.111"; gene_name "CUFF.1975"; flanks "120400944^,120396838^"; structure "1-,2-"; splice_chain "120396876-,120396838-"; psi "0.618300";
chr2	juncbase	intron_retention	99225474	99226106	.	-	.	gene_id "intron_retention.130"; transcript_id "intron_retention.130"; gene_name "CUFF.1975"; flanks "99225474-,99226106^"; structure "0,1^2-"; splice_chain ",99225474^99226106-"; psi "0.357100";
chr6	juncbase	cassette	133049880	133046118	.	-	.	gene_id "cassette.116"; transcript_id "cassette.116"; gene_name "CUFF.1975"; flanks "133049880^,133046118-"; structure "0,1-2^"; splice_chain ",133047977-133047861^"; psi "0.576500";
chr6	juncbase	cassette	133055392	133046118	.	-	.	gene_id "cassette.117"; transcript_id "cassette.117"; gene_name "CUFF.1975"; flanks "133055392^,133046118-"; structure "0,1-2^"; splice_chain ",133047977-133047861^"; psi "0.576500";
chr9	juncbase	jcn_only_AA	125667389	125652824	.	-	.	gene_id "jcn_only_AA.112"; transcript_id "jcn_only_AA.112"; gene_name "CUFF.1975"; flanks "125667389^,125652824^"; structure "1-,2-"; splice_chain "125659855-,125652824-"; psi "0.081100";
chr9	juncbase	jcn_only_AA	15249916	15214247	.	-	.	gene_id "jcn_only_AA.113"; transcript_id "jcn_only_AA.113"; gene_name "CUFF.1975"; flanks "15249916^,15214247^"; structure "1-,2-"; splice_chain "15249685-,15214247-"; psi "0.462300";
chr1	juncbase	jcn_only_AA	167365664	167367231	.	-	.	gene_id "jcn_only_AA.114"; transcript_id "jcn_only_AA.114"; gene_name "CUFF.1975"; flanks "167365664^,167367231^"; structure "1-,2-"; splice_chain "167365770-,167367231-"; psi "0.903700";
chr19	juncbase	jcn_only_AA	44771114	44777458	.	-	.	gene_id "jcn_only_AA.115"; transcript_id "jcn_only_AA.115"; gene_name "CUFF.1975"; flanks "44771114^,44777458^"; structure "1-,2-"; splice_chain "44771533-,44777458-"; psi "0.720930";
chr19	juncbase	jcn_only_AA	44771114	44777052	.	-	.	gene_id "jcn_only_AA.116"; transcript_id "jcn_only_AA.116"; gene_name "CUFF.1975"; flanks "44771114^,44777052^"; structure "1-,2-"; splice_chain "44771533-,44777052-"; psi "0.755102";
chr12	juncbase	intron_retention	120221712	120220441	.	-	.	gene_id "intron_retention.131"; transcript_id "intron_retention.131"; gene_name "CUFF.1975"; flanks "120221712-,120220441^"; structure "0,1^2-"; splice_chain ",120221712^120220441-"; psi "0.761200";
chr19	juncbase	cassette	6007023	6002881	.	-	.	gene_id "cassette.118"; transcript_id "cassette.118"; gene_name "CUFF.1975"; flanks "6007023^,6002881-"; structure "0,1-2^"; splice_chain ",6004309-6004212^"; psi "0.171700";
chr15	juncbase	jcn_only_AD	24820150	24832714	.	-	.	gene_id "jcn_only_AD.130"; transcript_id "jcn_only_AD.130"; gene_name "CUFF.1975"; flanks "24820150-,24832714-"; structure "1^,2^"; splice_chain "24820150^,24825477^"; psi "0.836100";
chr3	juncbase	jcn_only_AD	49365119	49343321	.	-	.	gene_id "jcn_only_AD.131"; transcript_id "jcn_only_AD.131"; gene_name "CUFF.1975"; flanks "49365119-,49343321-"; structure "1^,2^"; splice_chain "49365119^,49348053^"; psi "0.129700";
chr1	juncbase	intron_retention	41486536	41486450	.	-	.	gene_id "intron_retention.132"; transcript_id "intron_retention.132"; gene_name "CUFF.1975"; flanks "41486536-,41486450^"; structure "0,1^2-"; splice_chain ",41486536^41486450-"; psi "0.223500";
chr8	juncbase	jcn_only_AD	81130704	80976828	.	-	.	gene_id "jcn_only_AD.132"; transcript_id "jcn_only_AD.132"; gene_name "CUFF.1975"; flanks "81130704-,80976828-"; structure "1^,2^"; splice_chain "81130704^,81083660^"; psi "0.389085";
chr11	juncbase	jcn_only_AA	133711925	133710704	.	-	.	gene_id "jcn_only_AA.117"; transcript_id "jcn_only_AA.117"; gene_name "CUFF.1975"; flanks "133711925^,133710704^"; structure "1-,2-"; splice_chain "133710818-,133710704-"; psi "0.109100";
chr7	juncbase	cassette	34724296	34851382	.	-	.	gene_id "cassette.119"; transcript_id "cassette.119"; gene_name "CUFF.1975"; flanks "34724296^,34851382-"; structure "0,1-2^"; splice_chain ",34818074-34818177^"; psi "0.613100";
chr7	juncbase	cassette	34724296	34867013	.	-	.	gene_id "cassette.120"; transcript_id "cassette.120"; gene_name "CUFF.1975"; flanks "34724296^,34867013-"; structure "0,1-2^"; splice_chain ",34818074-34818177^"; psi "0.613100";
chr19	juncbase	jcn_only_AD	41946386	41944319	.	-	.	gene_id "jcn_only_AD.133"; transcript_id "jcn_only_AD.133"; gene_name "CUFF.1975"; flanks "41946386-,41944319-"; structure "1^,2^"; splice_chain "41946386^,41945379^"; psi "0.112840";
chr19	juncbase	jcn_only_AD	41945787	41944319	.	-	.	gene_id "jcn_only_AD.134"; transcript_id "jcn_only_AD.134"; gene_name "CUFF.1975"; flanks "41945787-,41944319-"; structure "1^,2^"; splice_chain "41945787^,41945379^"; psi "0.837093";
chr8	juncbase	intron_retention	99057736	99057627	.	-	.	gene_id "intron_retention.133"; transcript_id "intron_retention.133"; gene_name "CUFF.1975"; flanks "99057736-,99057627^"; structure "0,1^2-"; splice_chain ",99057736^99057627-"; psi "0.034100";
chr3	juncbase	intron_retention	13976987	13977418	.	-	.	gene_id "intron_retention.134"; transcript_id "intron_retention.134"; gene_name "CUFF.1975"; flanks "13976987-,13977418^"; structure "0,1^2-"; splice_chain ",13976987^13977418-"; psi "0.048300";
chr5	juncbase	jcn_only_AD	145616995	145634506	.	-	.	gene_id "jcn_only_AD.135"; transcript_id "jcn_only_AD.135"; gene_name "CUFF.1975"; flanks "145616995-,145634506-"; structure "1^,2^"; splice_chain "145616995^,145631438^"; psi "0.555600";
chr7	juncbase	jcn_only_AD	86554844	86548626	.	-	.	gene_id "jcn_only_AD.136"; transcript_id "jcn_only_AD.136"; gene_name "CUFF.1975"; flanks "86554844-,86548626-"; structure "1^,2^"; splice_chain "86554844^,86550079^"; psi "0.701264";
chr19	juncbase	jcn_only_AD	52264483	52271898	.	-	.	gene_id "jcn_only_AD.137"; transcript_id "jcn_only_AD.137"; gene_name "CUFF.1975"; flanks "52264483-,52271898-"; structure "1^,2^"; splice_chain "52264483^,52266770^"; psi "0.901040";
chr19	juncbase	jcn_only_AD	52265788	52271898	.	-	.	gene_id "jcn_only_AD.138"; transcript_id "jcn_only_AD.138"; gene_name "CUFF.1975"; flanks "52265788-,52271898-"; structure "1^,2^"; splice_chain "52265788^,52266770^"; psi "0.635033";
chr11	juncbase	intron_retention	3405514	3422989	.	-	.	gene_id "intron_retention.135"; transcript_id "intron_retention.135"; gene_name "CUFF.1975"; flanks "3405514-,3422989^"; structure "0,1^2-"; splice_chain ",3405514^3422989-"; psi "0.835600";
chr18	juncbase	jcn_only_AD	76738786	76737429	.	-	.	gene_id "jcn_only_AD.139"; transcript_id "jcn_only_AD.139"; gene_name "CUFF.1975"; flanks "76738786-,76737429-"; structure "1^,2^"; splice_chain "76738786^,76737555^"; psi "0.148165";
chr18	juncbase	jcn_only_AD	76738463	76737429	.	-	.	gene_id "jcn_only_AD.140"; transcript_id "jcn_only_AD.140"; gene_name "CUFF.1975"; flanks "76738463-,76737429-"; structure "1^,2^"; splice_chain "76738463^,76737555^"; psi "0.135589";
chr11	juncbase	intron_retention	119058367	119058649	.	-	.	gene_id "intron_retention.136"; transcript_id "intron_retention.136"; gene_name "CUFF.1975"; flanks "119058367-,119058649^"; structure "0,1^2-"; splice_chain ",119058367^119058649-"; psi "0.663900";
chr2	juncbase	intron_retention	219457430	219458892	.	-	.	gene_id "intron_retention.137"; transcript_id "intron_retention.137"; gene_name "CUFF.1975"; flanks "219457430-,219458892^"; structure "0,1^2-"; splice_chain ",219457430^219458892-"; psi "0.274900";
chr6	juncbase	jcn_only_AA	128643184	128540241	.	-	.	gene_id "jcn_only_AA.118"; transcript_id "jcn_only_AA.118"; gene_name "CUFF.1975"; flanks "128643184^,128540241^"; structure "1-,2-"; splice_chain "128563747-,128540241-"; psi "0.020100";
chr11	juncbase	intron_retention	94704141	94703260	.	-	.	gene_id "intron_retention.138"; transcript_id "intron_retention.138"; gene_name "CUFF.1975"; flanks "94704141-,94703260^"; structure "0,1^2-"; splice_chain ",94704141^94703260-"; psi "0.163900";
chr2	juncbase	intron_retention	263564	263372	.	-	.	gene_id "intron_retention.139"; transcript_id "intron_retention.139"; gene_name "CUFF.1975"; flanks "263564-,263372^"; structure "0,1^2-"; splice_chain ",263564^263372-"; psi "0.015600";
chr11	juncbase	intron_retention	115268246	115268301	.	-	.	gene_id "intron_retention.140"; transcript_id "intron_retention.140"; gene_name "CUFF.1975"; flanks "115268246-,115268301^"; structure "0,1^2-"; splice_chain ",115268246^115268301-"; psi "0.460500";
chr11	juncbase	cassette	8615291	8496613	.	-	.	gene_id "cassette.121"; transcript_id "cassette.121"; gene_name "CUFF.1975"; flanks "8615291^,8496613-"; structure "0,1-2^"; splice_chain ",8555043-8554895^"; psi "0.764700";
chr6	juncbase	jcn_only_AD	112604369	112627531	.	-	.	gene_id "jcn_only_AD.141"; transcript_id "jcn_only_AD.141"; gene_name "CUFF.1975"; flanks "112604369-,112627531-"; structure "1^,2^"; splice_chain "112604369^,112604394^"; psi "0.785714";
chr6	juncbase	jcn_only_AD	112558117	112627531	.	-	.	gene_id "jcn_only_AD.142"; transcript_id "jcn_only_AD.142"; gene_name "CUFF.1975"; flanks "112558117-,112627531-"; structure "1^,2^"; splice_chain "112558117^,112604394^"; psi "0.619078";
chr3	juncbase	intron_retention	33481951	33481348	.	-	.	gene_id "intron_retention.141"; transcript_id "intron_retention.141"; gene_name "CUFF.1975"; flanks "33481951-,33481348^"; structure "0,1^2-"; splice_chain ",33481951^33481348-"; psi "0.650000";
chr11	juncbase	intron_retention	2906432	2905364	.	-	.	gene_id "intron_retention.142"; transcript_id "intron_retention.142"; gene_name "CUFF.1975"; flanks "2906432-,2905364^"; structure "0,1^2-"; splice_chain ",2906432^2905364-"; psi "0.690800";
chr8	juncbase	jcn_only_AD	56663523	56652777	.	-	.	gene_id "jcn_only_AD.143"; transcript_id "jcn_only_AD.143"; gene_name "CUFF.1975"; flanks "56663523-,56652777-"; structure "1^,2^"; splice_chain "56663523^,56657620^"; psi "0.462330";
chr16	juncbase	jcn_only_AD	583998	596817	.	-	.	gene_id "jcn_only_AD.144"; transcript_id "jcn_only_AD.144"; gene_name "CUFF.1975"; flanks "583998-,596817-"; structure "1^,2^"; splice_chain "583998^,586142^"; psi "0.857100";
chr3	juncbase	jcn_only_AD	27243001	27233733	.	-	.	gene_id "jcn_only_AD.145"; transcript_id "jcn_only_AD.145"; gene_name "CUFF.1975"; flanks "27243001-,27233733-"; structure "1^,2^"; splice_chain "27243001^,27235552^"; psi "0.939498";
chr3	juncbase	jcn_only_AD	27236028	27233733	.	-	.	gene_id "jcn_only_AD.146"; transcript_id "jcn_only_AD.146"; gene_name "CUFF.1975"; flanks "27236028-,27233733-"; structure "1^,2^"; splice_chain "27236028^,27235552^"; psi "0.558870";
chr3	juncbase	jcn_only_AD	107596749	107595033	.	-	.	gene_id "jcn_only_AD.147"; transcript_id "jcn_only_AD.147"; gene_name "CUFF.1975"; flanks "107596749-,107595033-"; structure "1^,2^"; splice_chain "107596749^,107596160^"; psi "0.808067";
chr2	juncbase	intron_retention	242440943	242440211	.	-	.	gene_id "intron_retention.143"; transcript_id "intron_retention.143"; gene_name "CUFF.1975"; flanks "242440943-,242440211^"; structure "0,1^2-"; splice_chain ",242440943^242440211-"; psi "0.726900";
chr19	juncbase	intron_retention	1440240	1440348	.	-	.	gene_id "intron_retention.144"; transcript_id "intron_retention.144"; gene_name "CUFF.1975"; flanks "1440240-,1440348^"; structure "0,1^2-"; splice_chain ",1440240^1440348-"; psi "0.492500";
chr11	juncbase	cassette	36459026	36472759	.	-	.	gene_id "cassette.122"; transcript_id "cassette.122"; gene_name "CUFF.1975"; flanks "36459026^,36472759-"; structure "0,1-2^"; splice_chain ",36467850-36467990^"; psi "0.918900";
chr11	juncbase	intron_retention	10828802	10827594	.	-	.	gene_id "intron_retention.145"; transcript_id "intron_retention.145"; gene_name "CUFF.1975"; flanks "10828802-,10827594^"; structure "0,1^2-"; splice_chain ",10828802^10827594-"; psi "0.179600";
chr15	juncbase	jcn_only_AD	91304485	91306196	.	-	.	gene_id "jcn_only_AD.148"; transcript_id "jcn_only_AD.148"; gene_name "CUFF.1975"; flanks "91304485-,91306196-"; structure "1^,2^"; splice_chain "91304485^,91305652^"; psi "0.402400";
chr22	juncbase	jcn_only_AA	51012764	51012144	.	-	.	gene_id "jcn_only_AA.119"; transcript_id "jcn_only_AA.119"; gene_name "CUFF.1975"; flanks "51012764^,51012144^"; structure "1-,2-"; splice_chain "51012350-,51012144-"; psi "0.817100";
chr11	juncbase	intron_retention	119056219	119056634	.	-	.	gene_id "intron_retention.146"; transcript_id "intron_retention.146"; gene_name "CUFF.1975"; flanks "119056219-,119056634^"; structure "0,1^2-"; splice_chain ",119056219^119056634-"; psi "0.080200";
chr4	juncbase	cassette	99407889	99403326	.	-	.	gene_id "cassette.123"; transcript_id "cassette.123"; gene_name "CUFF.1975"; flanks "99407889^,99403326-"; structure "0,1-2^"; splice_chain ",99405749-99405550^"; psi "0.218000";
chr3	juncbase	cassette	126114892	126126015	.	-	.	gene_id "cassette.124"; transcript_id "cassette.124"; gene_name "CUFF.1975"; flanks "126114892^,126126015-"; structure "0,1-2^"; splice_chain ",126115333-126115522^"; psi "0.256900";
chr17	juncbase	jcn_only_AD	29667601	29670027	.	-	.	gene_id "jcn_only_AD.149"; transcript_id "jcn_only_AD.149"; gene_name "CUFF.1975"; flanks "29667601-,29670027-"; structure "1^,2^"; splice_chain "29667601^,29667663^"; psi "0.175300";
chr14	juncbase	jcn_only_AA	92076824	92074747	.	-	.	gene_id "jcn_only_AA.120"; transcript_id "jcn_only_AA.120"; gene_name "CUFF.1975"; flanks "92076824^,92074747^"; structure "1-,2-"; splice_chain "92074748-,92074747-"; psi "0.003900";
chr2	juncbase	cassette	73250317	73247393	.	-	.	gene_id "cassette.125"; transcript_id "cassette.125"; gene_name "CUFF.1975"; flanks "73250317^,73247393-"; structure "0,1-2^"; splice_chain ",73249705-73249651^"; psi "0.436300";
chr12	juncbase	intron_retention	133182733	133181417	.	-	.	gene_id "intron_retention.147"; transcript_id "intron_retention.147"; gene_name "CUFF.1975"; flanks "133182733-,133181417^"; structure "0,1^2-"; splice_chain ",133182733^133181417-"; psi "0.686300";
chr19	juncbase	intron_retention	4310593	4311839	.	-	.	gene_id "intron_retention.148"; transcript_id "intron_retention.148"; gene_name "CUFF.1975"; flanks "4310593-,4311839^"; structure "0,1^2-"; splice_chain ",4310593^4311839-"; psi "0.367600";
chr12	juncbase	cassette	69207408	69222551	.	-	.	gene_id "cassette.126"; transcript_id "cassette.126"; gene_name "CUFF.1975"; flanks "69207408^,69222551-"; structure "0,1-2^"; splice_chain ",69214105-69214154^"; psi "0.560900";
chr12	juncbase	cassette	69207408	69233054	.	-	.	gene_id "cassette.127"; transcript_id "cassette.127"; gene_name "CUFF.1975"; flanks "69207408^,69233054-"; structure "0,1-2^"; splice_chain ",69214105-69214154^"; psi "0.560900";
chr12	juncbase	cassette	69207408	69218143	.	-	.	gene_id "cassette.128"; transcript_id "cassette.128"; gene_name "CUFF.1975"; flanks "69207408^,69218143-"; structure "0,1-2^"; splice_chain ",69214105-69214154^"; psi "0.560900";
chr12	juncbase	cassette	69203072	69218143	.	-	.	gene_id "cassette.129"; transcript_id "cassette.129"; gene_name "CUFF.1975"; flanks "69203072^,69218143-"; structure "0,1-2^"; splice_chain ",69214105-69214154^"; psi "0.560900";
chr12	juncbase	cassette	69203072	69233054	.	-	.	gene_id "cassette.130"; transcript_id "cassette.130"; gene_name "CUFF.1975"; flanks "69203072^,69233054-"; structure "0,1-2^"; splice_chain ",69214105-69214154^"; psi "0.560900";
chr2	juncbase	jcn_only_AD	208030191	207989128	.	-	.	gene_id "jcn_only_AD.150"; transcript_id "jcn_only_AD.150"; gene_name "CUFF.1975"; flanks "208030191-,207989128-"; structure "1^,2^"; splice_chain "208030191^,208013706^"; psi "0.932987";
chr2	juncbase	jcn_only_AD	208031864	207989128	.	-	.	gene_id "jcn_only_AD.151"; transcript_id "jcn_only_AD.151"; gene_name "CUFF.1975"; flanks "208031864-,207989128-"; structure "1^,2^"; splice_chain "208031864^,208013706^"; psi "0.500497";
chr7	juncbase	intron_retention	44247797	44250441	.	-	.	gene_id "intron_retention.149"; transcript_id "intron_retention.149"; gene_name "CUFF.1975"; flanks "44247797-,44250441^"; structure "0,1^2-"; splice_chain ",44247797^44250441-"; psi "0.542900";
chr14	juncbase	cassette	50247040	50249088	.	-	.	gene_id "cassette.131"; transcript_id "cassette.131"; gene_name "CUFF.1975"; flanks "50247040^,50249088-"; structure "0,1-2^"; splice_chain ",50247421-50247493^"; psi "0.871000";
chr11	juncbase	intron_retention	119291579	119291096	.	-	.	gene_id "intron_retention.150"; transcript_id "intron_retention.150"; gene_name "CUFF.1975"; flanks "119291579-,119291096^"; structure "0,1^2-"; splice_chain ",119291579^119291096-"; psi "0.100100";
chr21	juncbase	intron_retention	15660867	15663891	.	-	.	gene_id "intron_retention.151"; transcript_id "intron_retention.151"; gene_name "CUFF.1975"; flanks "15660867-,15663891^"; structure "0,1^2-"; splice_chain ",15660867^15663891-"; psi "0.084700";
chr3	juncbase	jcn_only_AD	107586158	107576049	.	-	.	gene_id "jcn_only_AD.152"; transcript_id "jcn_only_AD.152"; gene_name "CUFF.1975"; flanks "107586158-,107576049-"; structure "1^,2^"; splice_chain "107586158^,107585499^"; psi "0.916719";
chr3	juncbase	jcn_only_AD	107591815	107576049	.	-	.	gene_id "jcn_only_AD.153"; transcript_id "jcn_only_AD.153"; gene_name "CUFF.1975"; flanks "107591815-,107576049-"; structure "1^,2^"; splice_chain "107591815^,107585499^"; psi "0.924315";
chr7	juncbase	cassette	150817232	150819812	.	-	.	gene_id "cassette.132"; transcript_id "cassette.132"; gene_name "CUFF.1975"; flanks "150817232^,150819812-"; structure "0,1-2^"; splice_chain ",150817607-150817832^"; psi "0.825900";
chr7	juncbase	cassette	150817232	150820881	.	-	.	gene_id "cassette.133"; transcript_id "cassette.133"; gene_name "CUFF.1975"; flanks "150817232^,150820881-"; structure "0,1-2^"; splice_chain ",150817607-150817832^"; psi "0.825900";
chr1	juncbase	intron_retention	41487288	41486450	.	-	.	gene_id "intron_retention.152"; transcript_id "intron_retention.152"; gene_name "CUFF.1975"; flanks "41487288-,41486450^"; structure "0,1^2-"; splice_chain ",41487288^41486450-"; psi "0.920000";
chr9	juncbase	jcn_only_AA	125028059	125033232	.	-	.	gene_id "jcn_only_AA.121"; transcript_id "jcn_only_AA.121"; gene_name "CUFF.1975"; flanks "125028059^,125033232^"; structure "1-,2-"; splice_chain "125033143-,125033232-"; psi "0.536600";
chr3	juncbase	jcn_only_AA	33700999	33686395	.	-	.	gene_id "jcn_only_AA.122"; transcript_id "jcn_only_AA.122"; gene_name "CUFF.1975"; flanks "33700999^,33686395^"; structure "1-,2-"; splice_chain "33700501-,33686395-"; psi "0.621200";
chr17	juncbase	intron_retention	79225995	79225412	.	-	.	gene_id "intron_retention.153"; transcript_id "intron_retention.153"; gene_name "CUFF.1975"; flanks "79225995-,79225412^"; structure "0,1^2-"; splice_chain ",79225995^79225412-"; psi "0.455800";
chr16	juncbase	intron_retention	57514242	57513600	.	-	.	gene_id "intron_retention.154"; transcript_id "intron_retention.154"; gene_name "CUFF.1975"; flanks "57514242-,57513600^"; structure "0,1^2-"; splice_chain ",57514242^57513600-"; psi "0.220300";
chr12	juncbase	jcn_only_AD	4658002	4662149	.	-	.	gene_id "jcn_only_AD.154"; transcript_id "jcn_only_AD.154"; gene_name "CUFF.1975"; flanks "4658002-,4662149-"; structure "1^,2^"; splice_chain "4658002^,4659713^"; psi "0.986300";
chr6	juncbase	jcn_only_AA	128322341	128320049	.	-	.	gene_id "jcn_only_AA.123"; transcript_id "jcn_only_AA.123"; gene_name "CUFF.1975"; flanks "128322341^,128320049^"; structure "1-,2-"; splice_chain "128321475-,128320049-"; psi "0.161900";
chr1	juncbase	jcn_only_AA	167382351	167385286	.	-	.	gene_id "jcn_only_AA.124"; transcript_id "jcn_only_AA.124"; gene_name "CUFF.1975"; flanks "167382351^,167385286^"; structure "1-,2-"; splice_chain "167384737-,167385286-"; psi "0.684200";
chr1	juncbase	jcn_only_AD	174129055	174124835	.	-	.	gene_id "jcn_only_AD.155"; transcript_id "jcn_only_AD.155"; gene_name "CUFF.1975"; flanks "174129055-,174124835-"; structure "1^,2^"; splice_chain "174129055^,174128025^"; psi "0.071300";
chr11	juncbase	cassette	8494710	8483456	.	-	.	gene_id "cassette.134"; transcript_id "cassette.134"; gene_name "CUFF.1975"; flanks "8494710^,8483456-"; structure "0,1-2^"; splice_chain ",8486369-8486256^"; psi "0.864300";
chr17	juncbase	cassette	15638384	15638911	.	-	.	gene_id "cassette.135"; transcript_id "cassette.135"; gene_name "CUFF.1975"; flanks "15638384^,15638911-"; structure "0,1-2^"; splice_chain ",15638662-15638737^"; psi "0.197800";
chr19	juncbase	jcn_only_AD	10213244	10207249	.	-	.	gene_id "jcn_only_AD.156"; transcript_id "jcn_only_AD.156"; gene_name "CUFF.1975"; flanks "10213244-,10207249-"; structure "1^,2^"; splice_chain "10213244^,10213228^"; psi "0.382700";
chr14	juncbase	jcn_only_AD	81837332	81745083	.	-	.	gene_id "jcn_only_AD.157"; transcript_id "jcn_only_AD.157"; gene_name "CUFF.1975"; flanks "81837332-,81745083-"; structure "1^,2^"; splice_chain "81837332^,81772976^"; psi "0.771800";
chr4	juncbase	jcn_only_AD	83821525	83821376	.	-	.	gene_id "jcn_only_AD.158"; transcript_id "jcn_only_AD.158"; gene_name "CUFF.1975"; flanks "83821525-,83821376-"; structure "1^,2^"; splice_chain "83821525^,83821487^"; psi "0.055900";
chr13	juncbase	jcn_only_AA	21205241	21228015	.	-	.	gene_id "jcn_only_AA.125"; transcript_id "jcn_only_AA.125"; gene_name "CUFF.1975"; flanks "21205241^,21228015^"; structure "1-,2-"; splice_chain "21212471-,21228015-"; psi "0.804900";
chr7	juncbase	jcn_only_AA	73275596	73279323	.	-	.	gene_id "jcn_only_AA.126"; transcript_id "jcn_only_AA.126"; gene_name "CUFF.1975"; flanks "73275596^,73279323^"; structure "1-,2-"; splice_chain "73275799-,73279323-"; psi "0.402300";
chr6	juncbase	jcn_only_AD	112664980	112668494	.	-	.	gene_id "jcn_only_AD.159"; transcript_id "jcn_only_AD.159"; gene_name "CUFF.1975"; flanks "112664980-,112668494-"; structure "1^,2^"; splice_chain "112664980^,112666361^"; psi "0.542569";
chr6	juncbase	jcn_only_AD	112558117	112668494	.	-	.	gene_id "jcn_only_AD.160"; transcript_id "jcn_only_AD.160"; gene_name "CUFF.1975"; flanks "112558117-,112668494-"; structure "1^,2^"; splice_chain "112558117^,112666361^"; psi "0.706936";
chr7	juncbase	intron_retention	75040009	75040938	.	-	.	gene_id "intron_retention.155"; transcript_id "intron_retention.155"; gene_name "CUFF.1975"; flanks "75040009-,75040938^"; structure "0,1^2-"; splice_chain ",75040009^75040938-"; psi "0.727300";
chr11	juncbase	intron_retention	2906864	2906696	.	-	.	gene_id "intron_retention.156"; transcript_id "intron_retention.156"; gene_name "CUFF.1975"; flanks "2906864-,2906696^"; structure "0,1^2-"; splice_chain ",2906864^2906696-"; psi "0.714900";
chr2	juncbase	jcn_only_AA	38231359	38244329	.	-	.	gene_id "jcn_only_AA.127"; transcript_id "jcn_only_AA.127"; gene_name "CUFF.1975"; flanks "38231359^,38244329^"; structure "1-,2-"; splice_chain "38239746-,38244329-"; psi "0.919806";
chr2	juncbase	jcn_only_AA	38231359	38294125	.	-	.	gene_id "jcn_only_AA.128"; transcript_id "jcn_only_AA.128"; gene_name "CUFF.1975"; flanks "38231359^,38294125^"; structure "1-,2-"; splice_chain "38239746-,38294125-"; psi "0.841868";
chr17	juncbase	jcn_only_AD	1617150	1616189	.	-	.	gene_id "jcn_only_AD.161"; transcript_id "jcn_only_AD.161"; gene_name "CUFF.1975"; flanks "1617150-,1616189-"; structure "1^,2^"; splice_chain "1617150^,1616997^"; psi "0.387400";
chr2	juncbase	jcn_only_AA	73285657	73268060	.	-	.	gene_id "jcn_only_AA.129"; transcript_id "jcn_only_AA.129"; gene_name "CUFF.1975"; flanks "73285657^,73268060^"; structure "1-,2-"; splice_chain "73268790-,73268060-"; psi "0.934031";
chr3	juncbase	jcn_only_AD	33600799	33592887	.	-	.	gene_id "jcn_only_AD.162"; transcript_id "jcn_only_AD.162"; gene_name "CUFF.1975"; flanks "33600799-,33592887-"; structure "1^,2^"; splice_chain "33600799^,33600617^"; psi "0.651500";
chr5	juncbase	jcn_only_AD	139917819	139918504	.	-	.	gene_id "jcn_only_AD.163"; transcript_id "jcn_only_AD.163"; gene_name "CUFF.1975"; flanks "139917819-,139918504-"; structure "1^,2^"; splice_chain "139917819^,139917846^"; psi "0.055800";
chr14	juncbase	jcn_only_AD	71206759	71205115	.	-	.	gene_id "jcn_only_AD.164"; transcript_id "jcn_only_AD.164"; gene_name "CUFF.1975"; flanks "71206759-,71205115-"; structure "1^,2^"; splice_chain "71206759^,71206615^"; psi "0.760000";
chr11	juncbase	cassette	2466714	2549158	.	-	.	gene_id "cassette.136"; transcript_id "cassette.136"; gene_name "CUFF.1975"; flanks "2466714^,2549158-"; structure "0,1-2^"; splice_chain ",2542709-2542800^"; psi "0.534100";
chr12	juncbase	jcn_only_AA	58019247	58019408	.	-	.	gene_id "jcn_only_AA.130"; transcript_id "jcn_only_AA.130"; gene_name "CUFF.1975"; flanks "58019247^,58019408^"; structure "1-,2-"; splice_chain "58019365-,58019408-"; psi "0.290800";
chr7	juncbase	jcn_only_AD	65579901	65592691	.	-	.	gene_id "jcn_only_AD.165"; transcript_id "jcn_only_AD.165"; gene_name "CUFF.1975"; flanks "65579901-,65592691-"; structure "1^,2^"; splice_chain "65579901^,65579957^"; psi "0.395695";
chr8	juncbase	intron_retention	38003481	38001904	.	-	.	gene_id "intron_retention.157"; transcript_id "intron_retention.157"; gene_name "CUFF.1975"; flanks "38003481-,38001904^"; structure "0,1^2-"; splice_chain ",38003481^38001904-"; psi "0.192300";
chr12	juncbase	cassette	25706003	25702480	.	-	.	gene_id "cassette.137"; transcript_id "cassette.137"; gene_name "CUFF.1975"; flanks "25706003^,25702480-"; structure "0,1-2^"; splice_chain ",25705923-25705805^"; psi "0.750000";
chr7	juncbase	jcn_only_AA	156526871	156516872	.	-	.	gene_id "jcn_only_AA.131"; transcript_id "jcn_only_AA.131"; gene_name "CUFF.1975"; flanks "156526871^,156516872^"; structure "1-,2-"; splice_chain "156521414-,156516872-"; psi "0.488500";
chr2	juncbase	intron_retention	220097913	220098008	.	-	.	gene_id "intron_retention.158"; transcript_id "intron_retention.158"; gene_name "CUFF.1975"; flanks "220097913-,220098008^"; structure "0,1^2-"; splice_chain ",220097913^220098008-"; psi "0.216300";
chrX	juncbase	jcn_only_AA	85282495	85118099	.	-	.	gene_id "jcn_only_AA.132"; transcript_id "jcn_only_AA.132"; gene_name "CUFF.1975"; flanks "85282495^,85118099^"; structure "1-,2-"; splice_chain "85236813-,85118099-"; psi "0.500000";
chr3	juncbase	cassette	141868025	141724386	.	-	.	gene_id "cassette.138"; transcript_id "cassette.138"; gene_name "CUFF.1975"; flanks "141868025^,141724386-"; structure "0,1-2^"; splice_chain ",141772991-141772957^"; psi "0.628200";
chr3	juncbase	cassette	141811903	141724386	.	-	.	gene_id "cassette.139"; transcript_id "cassette.139"; gene_name "CUFF.1975"; flanks "141811903^,141724386-"; structure "0,1-2^"; splice_chain ",141772991-141772957^"; psi "0.628200";
chr12	juncbase	intron_retention	7086760	7086687	.	-	.	gene_id "intron_retention.159"; transcript_id "intron_retention.159"; gene_name "CUFF.1975"; flanks "7086760-,7086687^"; structure "0,1^2-"; splice_chain ",7086760^7086687-"; psi "0.363600";
chr7	juncbase	jcn_only_AD	22259485	22233651	.	-	.	gene_id "jcn_only_AD.166"; transcript_id "jcn_only_AD.166"; gene_name "CUFF.1975"; flanks "22259485-,22233651-"; structure "1^,2^"; splice_chain "22259485^,22234188^"; psi "0.888400";
chr12	juncbase	intron_retention	7090756	7090344	.	-	.	gene_id "intron_retention.160"; transcript_id "intron_retention.160"; gene_name "CUFF.1975"; flanks "7090756-,7090344^"; structure "0,1^2-"; splice_chain ",7090756^7090344-"; psi "0.220700";
chr17	juncbase	jcn_only_AD	80417948	80422163	.	-	.	gene_id "jcn_only_AD.167"; transcript_id "jcn_only_AD.167"; gene_name "CUFF.1975"; flanks "80417948-,80422163-"; structure "1^,2^"; splice_chain "80417948^,80418199^"; psi "0.971600";
chr6	juncbase	intron_retention	31938689	31938602	.	-	.	gene_id "intron_retention.161"; transcript_id "intron_retention.161"; gene_name "CUFF.1975"; flanks "31938689-,31938602^"; structure "0,1^2-"; splice_chain ",31938689^31938602-"; psi "0.340700";
chr12	juncbase	jcn_only_AA	57854338	57858456	.	-	.	gene_id "jcn_only_AA.133"; transcript_id "jcn_only_AA.133"; gene_name "CUFF.1975"; flanks "57854338^,57858456^"; structure "1-,2-"; splice_chain "57857448-,57858456-"; psi "0.653800";
chr11	juncbase	jcn_only_AD	65480526	65480819	.	-	.	gene_id "jcn_only_AD.168"; transcript_id "jcn_only_AD.168"; gene_name "CUFF.1975"; flanks "65480526-,65480819-"; structure "1^,2^"; splice_chain "65480526^,65480529^"; psi "0.076600";
chr2	juncbase	jcn_only_AD	109102363	109102891	.	-	.	gene_id "jcn_only_AD.169"; transcript_id "jcn_only_AD.169"; gene_name "CUFF.1975"; flanks "109102363-,109102891-"; structure "1^,2^"; splice_chain "109102363^,109102364^"; psi "0.002600";
chr15	juncbase	intron_retention	84873352	84873268	.	-	.	gene_id "intron_retention.162"; transcript_id "intron_retention.162"; gene_name "CUFF.1975"; flanks "84873352-,84873268^"; structure "0,1^2-"; splice_chain ",84873352^84873268-"; psi "0.625000";
chr5	juncbase	intron_retention	54456071	54456158	.	-	.	gene_id "intron_retention.163"; transcript_id "intron_retention.163"; gene_name "CUFF.1975"; flanks "54456071-,54456158^"; structure "0,1^2-"; splice_chain ",54456071^54456158-"; psi "0.114000";
chr10	juncbase	jcn_only_AA	78832855	78799395	.	-	.	gene_id "jcn_only_AA.134"; transcript_id "jcn_only_AA.134"; gene_name "CUFF.1975"; flanks "78832855^,78799395^"; structure "1-,2-"; splice_chain "78831403-,78799395-"; psi "0.803032";
chr10	juncbase	jcn_only_AA	78832855	78823901	.	-	.	gene_id "jcn_only_AA.135"; transcript_id "jcn_only_AA.135"; gene_name "CUFF.1975"; flanks "78832855^,78823901^"; structure "1-,2-"; splice_chain "78831403-,78823901-"; psi "0.541595";
chr19	juncbase	intron_retention	18121167	18121381	.	-	.	gene_id "intron_retention.164"; transcript_id "intron_retention.164"; gene_name "CUFF.1975"; flanks "18121167-,18121381^"; structure "0,1^2-"; splice_chain ",18121167^18121381-"; psi "0.482800";
chr15	juncbase	jcn_only_AD	45467417	45464516	.	-	.	gene_id "jcn_only_AD.170"; transcript_id "jcn_only_AD.170"; gene_name "CUFF.1975"; flanks "45467417-,45464516-"; structure "1^,2^"; splice_chain "45467417^,45465774^"; psi "0.458100";
chr6	juncbase	intron_retention	43483333	43481371	.	-	.	gene_id "intron_retention.165"; transcript_id "intron_retention.165"; gene_name "CUFF.1975"; flanks "43483333-,43481371^"; structure "0,1^2-"; splice_chain ",43483333^43481371-"; psi "0.110800";
chr19	juncbase	intron_retention	17452542	17452965	.	-	.	gene_id "intron_retention.166"; transcript_id "intron_retention.166"; gene_name "CUFF.1975"; flanks "17452542-,17452965^"; structure "0,1^2-"; splice_chain ",17452542^17452965-"; psi "0.369600";
chr16	juncbase	jcn_only_AA	2203223	2203579	.	-	.	gene_id "jcn_only_AA.136"; transcript_id "jcn_only_AA.136"; gene_name "CUFF.1975"; flanks "2203223^,2203579^"; structure "1-,2-"; splice_chain "2203320-,2203579-"; psi "0.101400";
chr12	juncbase	intron_retention	53861077	53862561	.	-	.	gene_id "intron_retention.167"; transcript_id "intron_retention.167"; gene_name "CUFF.1975"; flanks "53861077-,53862561^"; structure "0,1^2-"; splice_chain ",53861077^53862561-"; psi "0.442800";
chr19	juncbase	jcn_only_AA	4304758	4306021	.	-	.	gene_id "jcn_only_AA.137"; transcript_id "jcn_only_AA.137"; gene_name "CUFF.1975"; flanks "4304758^,4306021^"; structure "1-,2-"; splice_chain "4305943-,4306021-"; psi "0.048812";
chr19	juncbase	jcn_only_AA	4304758	4305982	.	-	.	gene_id "jcn_only_AA.138"; transcript_id "jcn_only_AA.138"; gene_name "CUFF.1975"; flanks "4304758^,4305982^"; structure "1-,2-"; splice_chain "4305943-,4305982-"; psi "0.061852";
chr17	juncbase	intron_retention	25969374	25972340	.	-	.	gene_id "intron_retention.168"; transcript_id "intron_retention.168"; gene_name "CUFF.1975"; flanks "25969374-,25972340^"; structure "0,1^2-"; splice_chain ",25969374^25972340-"; psi "0.571400";
chr12	juncbase	cassette	56558432	56557549	.	-	.	gene_id "cassette.140"; transcript_id "cassette.140"; gene_name "CUFF.1975"; flanks "56558432^,56557549-"; structure "0,1-2^"; splice_chain ",56558152-56558087^"; psi "0.285200";
chr4	juncbase	intron_retention	2934833	2934417	.	-	.	gene_id "intron_retention.169"; transcript_id "intron_retention.169"; gene_name "CUFF.1975"; flanks "2934833-,2934417^"; structure "0,1^2-"; splice_chain ",2934833^2934417-"; psi "0.852800";
chr15	juncbase	jcn_only_AD	29213952	29287956	.	-	.	gene_id "jcn_only_AD.171"; transcript_id "jcn_only_AD.171"; gene_name "CUFF.1975"; flanks "29213952-,29287956-"; structure "1^,2^"; splice_chain "29213952^,29282999^"; psi "0.963122";
chr15	juncbase	jcn_only_AD	29213921	29287956	.	-	.	gene_id "jcn_only_AD.172"; transcript_id "jcn_only_AD.172"; gene_name "CUFF.1975"; flanks "29213921-,29287956-"; structure "1^,2^"; splice_chain "29213921^,29282999^"; psi "0.409949";
chr15	juncbase	jcn_only_AD	29253787	29287956	.	-	.	gene_id "jcn_only_AD.173"; transcript_id "jcn_only_AD.173"; gene_name "CUFF.1975"; flanks "29253787-,29287956-"; structure "1^,2^"; splice_chain "29253787^,29282999^"; psi "0.557272";
chr2	juncbase	intron_retention	99225189	99226219	.	-	.	gene_id "intron_retention.170"; transcript_id "intron_retention.170"; gene_name "CUFF.1975"; flanks "99225189-,99226219^"; structure "0,1^2-"; splice_chain ",99225189^99226219-"; psi "0.541700";
chr12	juncbase	intron_retention	56708635	56705237	.	-	.	gene_id "intron_retention.171"; transcript_id "intron_retention.171"; gene_name "CUFF.1975"; flanks "56708635-,56705237^"; structure "0,1^2-"; splice_chain ",56708635^56705237-"; psi "0.814600";
chr22	juncbase	cassette	45148507	45182337	.	-	.	gene_id "cassette.141"; transcript_id "cassette.141"; gene_name "CUFF.1975"; flanks "45148507^,45182337-"; structure "0,1-2^"; splice_chain ",45173042-45173109^"; psi "0.283600";
chr7	juncbase	jcn_only_AA	37262220	37256300	.	-	.	gene_id "jcn_only_AA.139"; transcript_id "jcn_only_AA.139"; gene_name "CUFF.1975"; flanks "37262220^,37256300^"; structure "1-,2-"; splice_chain "37257361-,37256300-"; psi "0.703500";
chr16	juncbase	intron_retention	19584563	19590374	.	-	.	gene_id "intron_retention.172"; transcript_id "intron_retention.172"; gene_name "CUFF.1975"; flanks "19584563-,19590374^"; structure "0,1^2-"; splice_chain ",19584563^19590374-"; psi "0.452200";
chr20	juncbase	intron_retention	33589152	33589234	.	-	.	gene_id "intron_retention.173"; transcript_id "intron_retention.173"; gene_name "CUFF.1975"; flanks "33589152-,33589234^"; structure "0,1^2-"; splice_chain ",33589152^33589234-"; psi "0.702300";
chr15	juncbase	jcn_only_AA	77713346	77750746	.	-	.	gene_id "jcn_only_AA.140"; transcript_id "jcn_only_AA.140"; gene_name "CUFF.1975"; flanks "77713346^,77750746^"; structure "1-,2-"; splice_chain "77740061-,77750746-"; psi "0.991500";
chr7	juncbase	cassette	65592727	65595731	.	-	.	gene_id "cassette.142"; transcript_id "cassette.142"; gene_name "CUFF.1975"; flanks "65592727^,65595731-"; structure "0,1-2^"; splice_chain ",65595114-65595235^"; psi "0.430700";
chr8	juncbase	jcn_only_AA	38006159	38005845	.	-	.	gene_id "jcn_only_AA.141"; transcript_id "jcn_only_AA.141"; gene_name "CUFF.1975"; flanks "38006159^,38005845^"; structure "1-,2-"; splice_chain "38005877-,38005845-"; psi "0.728400";
chr3	juncbase	cassette	155523386	155520380	.	-	.	gene_id "cassette.143"; transcript_id "cassette.143"; gene_name "CUFF.1975"; flanks "155523386^,155520380-"; structure "0,1-2^"; splice_chain ",155521962-155521840^"; psi "0.401100";
chr1	juncbase	intron_retention	41487202	41486605	.	-	.	gene_id "intron_retention.174"; transcript_id "intron_retention.174"; gene_name "CUFF.1975"; flanks "41487202-,41486605^"; structure "0,1^2-"; splice_chain ",41487202^41486605-"; psi "0.355600";
chr19	juncbase	jcn_only_AA	20243270	20236318	.	-	.	gene_id "jcn_only_AA.142"; transcript_id "jcn_only_AA.142"; gene_name "CUFF.1975"; flanks "20243270^,20236318^"; structure "1-,2-"; splice_chain "20236592-,20236318-"; psi "0.105700";
chr19	juncbase	jcn_only_AD	16187507	16192723	.	-	.	gene_id "jcn_only_AD.174"; transcript_id "jcn_only_AD.174"; gene_name "CUFF.1975"; flanks "16187507-,16192723-"; structure "1^,2^"; splice_chain "16187507^,16191252^"; psi "0.480115";
chr19	juncbase	jcn_only_AD	16186982	16192723	.	-	.	gene_id "jcn_only_AD.175"; transcript_id "jcn_only_AD.175"; gene_name "CUFF.1975"; flanks "16186982-,16192723-"; structure "1^,2^"; splice_chain "16186982^,16191252^"; psi "0.757367";
chr7	juncbase	cassette	100823323	100818092	.	-	.	gene_id "cassette.144"; transcript_id "cassette.144"; gene_name "CUFF.1975"; flanks "100823323^,100818092-"; structure "0,1-2^"; splice_chain ",100822417-100822378^"; psi "0.914400";
chr14	juncbase	jcn_only_AD	50235339	50238312	.	-	.	gene_id "jcn_only_AD.176"; transcript_id "jcn_only_AD.176"; gene_name "CUFF.1975"; flanks "50235339-,50238312-"; structure "1^,2^"; splice_chain "50235339^,50235809^"; psi "0.716300";
chr9	juncbase	jcn_only_AD	130966465	130953141	.	-	.	gene_id "jcn_only_AD.177"; transcript_id "jcn_only_AD.177"; gene_name "CUFF.1975"; flanks "130966465-,130953141-"; structure "1^,2^"; splice_chain "130966465^,130954134^"; psi "0.844720";
chr18	juncbase	cassette	61067281	61064486	.	-	.	gene_id "cassette.145"; transcript_id "cassette.145"; gene_name "CUFF.1975"; flanks "61067281^,61064486-"; structure "0,1-2^"; splice_chain ",61066556-61066475^"; psi "0.136500";
chr9	juncbase	cassette	133320382	133327611	.	-	.	gene_id "cassette.146"; transcript_id "cassette.146"; gene_name "CUFF.1975"; flanks "133320382^,133327611-"; structure "0,1-2^"; splice_chain ",133325659-133325720^"; psi "0.902400";
chr15	juncbase	cassette	78526713	78487068	.	-	.	gene_id "cassette.147"; transcript_id "cassette.147"; gene_name "CUFF.1975"; flanks "78526713^,78487068-"; structure "0,1-2^"; splice_chain ",78518947-78518797^"; psi "0.854000";
chr17	juncbase	intron_retention	29684387	29685498	.	-	.	gene_id "intron_retention.175"; transcript_id "intron_retention.175"; gene_name "CUFF.1975"; flanks "29684387-,29685498^"; structure "0,1^2-"; splice_chain ",29684387^29685498-"; psi "0.015900";
chr4	juncbase	intron_retention	120379232	120381898	.	-	.	gene_id "intron_retention.176"; transcript_id "intron_retention.176"; gene_name "CUFF.1975"; flanks "120379232-,120381898^"; structure "0,1^2-"; splice_chain ",120379232^120381898-"; psi "0.541700";
chr3	juncbase	jcn_only_AA	49462800	49462486	.	-	.	gene_id "jcn_only_AA.143"; transcript_id "jcn_only_AA.143"; gene_name "CUFF.1975"; flanks "49462800^,49462486^"; structure "1-,2-"; splice_chain "49462579-,49462486-"; psi "0.956800";
chr7	juncbase	intron_retention	129028781	129028897	.	-	.	gene_id "intron_retention.177"; transcript_id "intron_retention.177"; gene_name "CUFF.1975"; flanks "129028781-,129028897^"; structure "0,1^2-"; splice_chain ",129028781^129028897-"; psi "0.832200";
chr9	juncbase	jcn_only_AA	116791252	116794928	.	-	.	gene_id "jcn_only_AA.144"; transcript_id "jcn_only_AA.144"; gene_name "CUFF.1975"; flanks "116791252^,116794928^"; structure "1-,2-"; splice_chain "116794925-,116794928-"; psi "0.857100";
chr11	juncbase	intron_retention	10829081	10828928	.	-	.	gene_id "intron_retention.178"; transcript_id "intron_retention.178"; gene_name "CUFF.1975"; flanks "10829081-,10828928^"; structure "0,1^2-"; splice_chain ",10829081^10828928-"; psi "0.930300";
chr11	juncbase	cassette	63672515	63676349	.	-	.	gene_id "cassette.148"; transcript_id "cassette.148"; gene_name "CUFF.1975"; flanks "63672515^,63676349-"; structure "0,1-2^"; splice_chain ",63673560-63673586^"; psi "0.283000";
chr11	juncbase	cassette	63672515	63675732	.	-	.	gene_id "cassette.149"; transcript_id "cassette.149"; gene_name "CUFF.1975"; flanks "63672515^,63675732-"; structure "0,1-2^"; splice_chain ",63673560-63673586^"; psi "0.283000";
chr17	juncbase	jcn_only_AA	5433801	5425106	.	-	.	gene_id "jcn_only_AA.145"; transcript_id "jcn_only_AA.145"; gene_name "CUFF.1975"; flanks "5433801^,5425106^"; structure "1-,2-"; splice_chain "5433378-,5425106-"; psi "0.792100";
chr9	juncbase	intron_retention	131486273	131484853	.	-	.	gene_id "intron_retention.179"; transcript_id "intron_retention.179"; gene_name "CUFF.1975"; flanks "131486273-,131484853^"; structure "0,1^2-"; splice_chain ",131486273^131484853-"; psi "0.304000";
chr6	juncbase	jcn_only_AD	112375364	112375538	.	-	.	gene_id "jcn_only_AD.178"; transcript_id "jcn_only_AD.178"; gene_name "CUFF.1975"; flanks "112375364-,112375538-"; structure "1^,2^"; splice_chain "112375364^,112375373^"; psi "0.809500";
chr12	juncbase	jcn_only_AA	53473095	53471045	.	-	.	gene_id "jcn_only_AA.146"; transcript_id "jcn_only_AA.146"; gene_name "CUFF.1975"; flanks "53473095^,53471045^"; structure "1-,2-"; splice_chain "53471955-,53471045-"; psi "0.889300";
chr12	juncbase	jcn_only_AA	21220317	21229386	.	-	.	gene_id "jcn_only_AA.147"; transcript_id "jcn_only_AA.147"; gene_name "CUFF.1975"; flanks "21220317^,21229386^"; structure "1-,2-"; splice_chain "21228194-,21229386-"; psi "0.936600";
chr17	juncbase	jcn_only_AD	79895138	79894737	.	-	.	gene_id "jcn_only_AD.179"; transcript_id "jcn_only_AD.179"; gene_name "CUFF.1975"; flanks "79895138-,79894737-"; structure "1^,2^"; splice_chain "79895138^,79895134^"; psi "0.547869";
chr17	juncbase	jcn_only_AD	79895404	79894737	.	-	.	gene_id "jcn_only_AD.180"; transcript_id "jcn_only_AD.180"; gene_name "CUFF.1975"; flanks "79895404-,79894737-"; structure "1^,2^"; splice_chain "79895404^,79895134^"; psi "0.132370";
chr2	juncbase	cassette	27668796	27668316	.	-	.	gene_id "cassette.150"; transcript_id "cassette.150"; gene_name "CUFF.1975"; flanks "27668796^,27668316-"; structure "0,1-2^"; splice_chain ",27668710-27668612^"; psi "0.949200";
chr3	juncbase	jcn_only_AD	125042153	125032500	.	-	.	gene_id "jcn_only_AD.181"; transcript_id "jcn_only_AD.181"; gene_name "CUFF.1975"; flanks "125042153-,125032500-"; structure "1^,2^"; splice_chain "125042153^,125033781^"; psi "0.941570";
chr3	juncbase	jcn_only_AD	125042232	125032500	.	-	.	gene_id "jcn_only_AD.182"; transcript_id "jcn_only_AD.182"; gene_name "CUFF.1975"; flanks "125042232-,125032500-"; structure "1^,2^"; splice_chain "125042232^,125033781^"; psi "0.799915";
chr9	juncbase	jcn_only_AD	35162302	35228012	.	-	.	gene_id "jcn_only_AD.183"; transcript_id "jcn_only_AD.183"; gene_name "CUFF.1975"; flanks "35162302-,35228012-"; structure "1^,2^"; splice_chain "35162302^,35227930^"; psi "0.257100";
chr7	juncbase	intron_retention	75045694	75045765	.	-	.	gene_id "intron_retention.180"; transcript_id "intron_retention.180"; gene_name "CUFF.1975"; flanks "75045694-,75045765^"; structure "0,1^2-"; splice_chain ",75045694^75045765-"; psi "0.686300";
chr3	juncbase	cassette	126113821	126114785	.	-	.	gene_id "cassette.151"; transcript_id "cassette.151"; gene_name "CUFF.1975"; flanks "126113821^,126114785-"; structure "0,1-2^"; splice_chain ",126114168-126114272^"; psi "0.367900";
chr8	juncbase	cassette	107726213	107752571	.	-	.	gene_id "cassette.152"; transcript_id "cassette.152"; gene_name "CUFF.1975"; flanks "107726213^,107752571-"; structure "0,1-2^"; splice_chain ",107751686-107751811^"; psi "0.745900";
chr1	juncbase	cassette	27480474	27436268	.	-	.	gene_id "cassette.153"; transcript_id "cassette.153"; gene_name "CUFF.1975"; flanks "27480474^,27436268-"; structure "0,1-2^"; splice_chain ",27440777-27440317^"; psi "0.895500";
chr20	juncbase	jcn_only_AD	33142153	32815999	.	-	.	gene_id "jcn_only_AD.184"; transcript_id "jcn_only_AD.184"; gene_name "CUFF.1975"; flanks "33142153-,32815999-"; structure "1^,2^"; splice_chain "33142153^,33087068^"; psi "0.476200";
chr11	juncbase	jcn_only_AA	826266	828260	.	-	.	gene_id "jcn_only_AA.148"; transcript_id "jcn_only_AA.148"; gene_name "CUFF.1975"; flanks "826266^,828260^"; structure "1-,2-"; splice_chain "828230-,828260-"; psi "0.288100";
chr19	juncbase	intron_retention	1438891	1440025	.	-	.	gene_id "intron_retention.181"; transcript_id "intron_retention.181"; gene_name "CUFF.1975"; flanks "1438891-,1440025^"; structure "0,1^2-"; splice_chain ",1438891^1440025-"; psi "0.811000";
chr11	juncbase	intron_retention	59861031	59861437	.	-	.	gene_id "intron_retention.182"; transcript_id "intron_retention.182"; gene_name "CUFF.1975"; flanks "59861031-,59861437^"; structure "0,1^2-"; splice_chain ",59861031^59861437-"; psi "0.824000";
chr18	juncbase	jcn_only_AD	14784362	14784462	.	-	.	gene_id "jcn_only_AD.185"; transcript_id "jcn_only_AD.185"; gene_name "CUFF.1975"; flanks "14784362-,14784462-"; structure "1^,2^"; splice_chain "14784362^,14784363^"; psi "0.002000";
chr16	juncbase	intron_retention	2203046	2203147	.	-	.	gene_id "intron_retention.183"; transcript_id "intron_retention.183"; gene_name "CUFF.1975"; flanks "2203046-,2203147^"; structure "0,1^2-"; splice_chain ",2203046^2203147-"; psi "0.533300";
chr6	juncbase	intron_retention	114270143	114267312	.	-	.	gene_id "intron_retention.184"; transcript_id "intron_retention.184"; gene_name "CUFF.1975"; flanks "114270143-,114267312^"; structure "0,1^2-"; splice_chain ",114270143^114267312-"; psi "0.092400";
chr5	juncbase	jcn_only_AA	178050257	178046897	.	-	.	gene_id "jcn_only_AA.149"; transcript_id "jcn_only_AA.149"; gene_name "CUFF.1975"; flanks "178050257^,178046897^"; structure "1-,2-"; splice_chain "178049460-,178046897-"; psi "0.324702";
chr5	juncbase	jcn_only_AA	178050257	178047674	.	-	.	gene_id "jcn_only_AA.150"; transcript_id "jcn_only_AA.150"; gene_name "CUFF.1975"; flanks "178050257^,178047674^"; structure "1-,2-"; splice_chain "178049460-,178047674-"; psi "0.738714";
chr14	juncbase	cassette	60018073	60010172	.	-	.	gene_id "cassette.154"; transcript_id "cassette.154"; gene_name "CUFF.1975"; flanks "60018073^,60010172-"; structure "0,1-2^"; splice_chain ",60012017-60011881^"; psi "0.226300";
chr6	juncbase	cassette	32823982	32825782	.	-	.	gene_id "cassette.155"; transcript_id "cassette.155"; gene_name "CUFF.1975"; flanks "32823982^,32825782-"; structure "0,1-2^"; splice_chain ",32825040-32825171^"; psi "0.948900";
chr7	juncbase	cassette	102603980	102566821	.	-	.	gene_id "cassette.156"; transcript_id "cassette.156"; gene_name "CUFF.1975"; flanks "102603980^,102566821-"; structure "0,1-2^"; splice_chain ",102572380-102572328^"; psi "0.894400";
chr2	juncbase	cassette	33505225	33525518	.	-	.	gene_id "cassette.157"; transcript_id "cassette.157"; gene_name "CUFF.1975"; flanks "33505225^,33525518-"; structure "0,1-2^"; splice_chain ",33518227-33518349^"; psi "0.523200";
chr4	juncbase	cassette	120376288	120381338	.	-	.	gene_id "cassette.158"; transcript_id "cassette.158"; gene_name "CUFF.1975"; flanks "120376288^,120381338-"; structure "0,1-2^"; splice_chain ",120379126-120379325^"; psi "0.206000";
chr3	juncbase	intron_retention	125745178	125743748	.	-	.	gene_id "intron_retention.185"; transcript_id "intron_retention.185"; gene_name "CUFF.1975"; flanks "125745178-,125743748^"; structure "0,1^2-"; splice_chain ",125745178^125743748-"; psi "0.230500";
chr2	juncbase	jcn_only_AD	191302287	191334484	.	-	.	gene_id "jcn_only_AD.186"; transcript_id "jcn_only_AD.186"; gene_name "CUFF.1975"; flanks "191302287-,191334484-"; structure "1^,2^"; splice_chain "191302287^,191334375^"; psi "0.423907";
chr2	juncbase	jcn_only_AD	191307731	191334484	.	-	.	gene_id "jcn_only_AD.187"; transcript_id "jcn_only_AD.187"; gene_name "CUFF.1975"; flanks "191307731-,191334484-"; structure "1^,2^"; splice_chain "191307731^,191334375^"; psi "0.746377";
chr16	juncbase	cassette	57509762	57509131	.	-	.	gene_id "cassette.159"; transcript_id "cassette.159"; gene_name "CUFF.1975"; flanks "57509762^,57509131-"; structure "0,1-2^"; splice_chain ",57509532-57509418^"; psi "0.868200";
chr16	juncbase	jcn_only_AD	75576500	75575353	.	-	.	gene_id "jcn_only_AD.188"; transcript_id "jcn_only_AD.188"; gene_name "CUFF.1975"; flanks "75576500-,75575353-"; structure "1^,2^"; splice_chain "75576500^,75576453^"; psi "0.735800";
chr16	juncbase	intron_retention	3115495	3115622	.	-	.	gene_id "intron_retention.186"; transcript_id "intron_retention.186"; gene_name "CUFF.1975"; flanks "3115495-,3115622^"; structure "0,1^2-"; splice_chain ",3115495^3115622-"; psi "0.741200";
chr22	juncbase	jcn_only_AA	25170289	25158488	.	-	.	gene_id "jcn_only_AA.151"; transcript_id "jcn_only_AA.151"; gene_name "CUFF.1975"; flanks "25170289^,25158488^"; structure "1-,2-"; splice_chain "25165756-,25158488-"; psi "0.960000";
chr12	juncbase	intron_retention	22672049	22666313	.	-	.	gene_id "intron_retention.187"; transcript_id "intron_retention.187"; gene_name "CUFF.1975"; flanks "22672049-,22666313^"; structure "0,1^2-"; splice_chain ",22672049^22666313-"; psi "0.067800";
chr10	juncbase	cassette	60037082	60047321	.	-	.	gene_id "cassette.160"; transcript_id "cassette.160"; gene_name "CUFF.1975"; flanks "60037082^,60047321-"; structure "0,1-2^"; splice_chain ",60042659-60042842^"; psi "0.703800";
chr9	juncbase	jcn_only_AD	130931331	130929443	.	-	.	gene_id "jcn_only_AD.189"; transcript_id "jcn_only_AD.189"; gene_name "CUFF.1975"; flanks "130931331-,130929443-"; structure "1^,2^"; splice_chain "130931331^,130929818^"; psi "0.946797";
chr9	juncbase	jcn_only_AD	130931355	130929443	.	-	.	gene_id "jcn_only_AD.190"; transcript_id "jcn_only_AD.190"; gene_name "CUFF.1975"; flanks "130931355-,130929443-"; structure "1^,2^"; splice_chain "130931355^,130929818^"; psi "0.858749";
chr14	juncbase	jcn_only_AD	31358349	31355532	.	-	.	gene_id "jcn_only_AD.191"; transcript_id "jcn_only_AD.191"; gene_name "CUFF.1975"; flanks "31358349-,31355532-"; structure "1^,2^"; splice_chain "31358349^,31358326^"; psi "0.950100";
chr15	juncbase	jcn_only_AA	78471892	78471173	.	-	.	gene_id "jcn_only_AA.152"; transcript_id "jcn_only_AA.152"; gene_name "CUFF.1975"; flanks "78471892^,78471173^"; structure "1-,2-"; splice_chain "78471322-,78471173-"; psi "0.976500";
chr6	juncbase	cassette	39864973	39859155	.	-	.	gene_id "cassette.161"; transcript_id "cassette.161"; gene_name "CUFF.1975"; flanks "39864973^,39859155-"; structure "0,1-2^"; splice_chain ",39859539-39859399^"; psi "0.224100";
chr11	juncbase	intron_retention	65479750	65479850	.	-	.	gene_id "intron_retention.188"; transcript_id "intron_retention.188"; gene_name "CUFF.1975"; flanks "65479750-,65479850^"; structure "0,1^2-"; splice_chain ",65479750^65479850-"; psi "0.817000";
chr11	juncbase	jcn_only_AA	118401949	118402493	.	-	.	gene_id "jcn_only_AA.153"; transcript_id "jcn_only_AA.153"; gene_name "CUFF.1975"; flanks "118401949^,118402493^"; structure "1-,2-"; splice_chain "118402490-,118402493-"; psi "0.516800";
chr7	juncbase	intron_retention	37488463	37382367	.	-	.	gene_id "intron_retention.189"; transcript_id "intron_retention.189"; gene_name "CUFF.1975"; flanks "37488463-,37382367^"; structure "0,1^2-"; splice_chain ",37488463^37382367-"; psi "0.910400";
chr2	juncbase	intron_retention	46844109	46842324	.	-	.	gene_id "intron_retention.190"; transcript_id "intron_retention.190"; gene_name "CUFF.1975"; flanks "46844109-,46842324^"; structure "0,1^2-"; splice_chain ",46844109^46842324-"; psi "0.041300";
chr11	juncbase	intron_retention	1775224	1775131	.	-	.	gene_id "intron_retention.191"; transcript_id "intron_retention.191"; gene_name "CUFF.1975"; flanks "1775224-,1775131^"; structure "0,1^2-"; splice_chain ",1775224^1775131-"; psi "0.341200";
chr2	juncbase	cassette	204341799	204326648	.	-	.	gene_id "cassette.162"; transcript_id "cassette.162"; gene_name "CUFF.1975"; flanks "204341799^,204326648-"; structure "0,1-2^"; splice_chain ",204335036-204334962^"; psi "0.449000";
chr2	juncbase	cassette	204354307	204326648	.	-	.	gene_id "cassette.163"; transcript_id "cassette.163"; gene_name "CUFF.1975"; flanks "204354307^,204326648-"; structure "0,1-2^"; splice_chain ",204335036-204334962^"; psi "0.449000";
chr3	juncbase	jcn_only_AA	49362135	49349087	.	-	.	gene_id "jcn_only_AA.154"; transcript_id "jcn_only_AA.154"; gene_name "CUFF.1975"; flanks "49362135^,49349087^"; structure "1-,2-"; splice_chain "49354911-,49349087-"; psi "0.685702";
chr3	juncbase	jcn_only_AA	49362135	49348170	.	-	.	gene_id "jcn_only_AA.155"; transcript_id "jcn_only_AA.155"; gene_name "CUFF.1975"; flanks "49362135^,49348170^"; structure "1-,2-"; splice_chain "49354911-,49348170-"; psi "0.067933";
chr3	juncbase	jcn_only_AA	49362135	49350046	.	-	.	gene_id "jcn_only_AA.156"; transcript_id "jcn_only_AA.156"; gene_name "CUFF.1975"; flanks "49362135^,49350046^"; structure "1-,2-"; splice_chain "49354911-,49350046-"; psi "0.166667";
chr2	juncbase	intron_retention	61764154	61761038	.	-	.	gene_id "intron_retention.192"; transcript_id "intron_retention.192"; gene_name "CUFF.1975"; flanks "61764154-,61761038^"; structure "0,1^2-"; splice_chain ",61764154^61761038-"; psi "0.414100";
chr7	juncbase	jcn_only_AA	117431345	117424508	.	-	.	gene_id "jcn_only_AA.157"; transcript_id "jcn_only_AA.157"; gene_name "CUFF.1975"; flanks "117431345^,117424508^"; structure "1-,2-"; splice_chain "117426479-,117424508-"; psi "0.750000";
chr3	juncbase	jcn_only_AD	186649183	186681573	.	-	.	gene_id "jcn_only_AD.192"; transcript_id "jcn_only_AD.192"; gene_name "CUFF.1975"; flanks "186649183-,186681573-"; structure "1^,2^"; splice_chain "186649183^,186660215^"; psi "0.246799";
chr3	juncbase	jcn_only_AD	186648623	186681573	.	-	.	gene_id "jcn_only_AD.193"; transcript_id "jcn_only_AD.193"; gene_name "CUFF.1975"; flanks "186648623-,186681573-"; structure "1^,2^"; splice_chain "186648623^,186660215^"; psi "0.836265";
chr3	juncbase	jcn_only_AD	186648927	186681573	.	-	.	gene_id "jcn_only_AD.194"; transcript_id "jcn_only_AD.194"; gene_name "CUFF.1975"; flanks "186648927-,186681573-"; structure "1^,2^"; splice_chain "186648927^,186660215^"; psi "0.544366";
chr17	juncbase	jcn_only_AD	79478929	79478652	.	-	.	gene_id "jcn_only_AD.195"; transcript_id "jcn_only_AD.195"; gene_name "CUFF.1975"; flanks "79478929-,79478652-"; structure "1^,2^"; splice_chain "79478929^,79478789^"; psi "0.878400";
chr17	juncbase	intron_retention	76993922	76993726	.	-	.	gene_id "intron_retention.193"; transcript_id "intron_retention.193"; gene_name "CUFF.1975"; flanks "76993922-,76993726^"; structure "0,1^2-"; splice_chain ",76993922^76993726-"; psi "0.165600";
chr1	juncbase	jcn_only_AD	11159871	11161858	.	-	.	gene_id "jcn_only_AD.196"; transcript_id "jcn_only_AD.196"; gene_name "CUFF.1975"; flanks "11159871-,11161858-"; structure "1^,2^"; splice_chain "11159871^,11159967^"; psi "0.117500";
chr16	juncbase	cassette	30006424	30005129	.	-	.	gene_id "cassette.164"; transcript_id "cassette.164"; gene_name "CUFF.1975"; flanks "30006424^,30005129-"; structure "0,1-2^"; splice_chain ",30006164-30005227^"; psi "0.126100";
chr12	juncbase	intron_retention	53854209	53854799	.	-	.	gene_id "intron_retention.194"; transcript_id "intron_retention.194"; gene_name "CUFF.1975"; flanks "53854209-,53854799^"; structure "0,1^2-"; splice_chain ",53854209^53854799-"; psi "0.812700";
chr19	juncbase	cassette	17445931	17448817	.	-	.	gene_id "cassette.165"; transcript_id "cassette.165"; gene_name "CUFF.1975"; flanks "17445931^,17448817-"; structure "0,1-2^"; splice_chain ",17447629-17448473^"; psi "0.948600";
chr2	juncbase	jcn_only_AD	1263213	1271137	.	-	.	gene_id "jcn_only_AD.197"; transcript_id "jcn_only_AD.197"; gene_name "CUFF.1975"; flanks "1263213-,1271137-"; structure "1^,2^"; splice_chain "1263213^,1266721^"; psi "0.826500";
chr11	juncbase	jcn_only_AA	8502081	8496363	.	-	.	gene_id "jcn_only_AA.158"; transcript_id "jcn_only_AA.158"; gene_name "CUFF.1975"; flanks "8502081^,8496363^"; structure "1-,2-"; splice_chain "8496613-,8496363-"; psi "0.273338";
chr7	juncbase	jcn_only_AD	150784159	150813880	.	-	.	gene_id "jcn_only_AD.198"; transcript_id "jcn_only_AD.198"; gene_name "CUFF.1975"; flanks "150784159-,150813880-"; structure "1^,2^"; splice_chain "150784159^,150787634^"; psi "0.890926";
chr7	juncbase	jcn_only_AD	150784291	150813880	.	-	.	gene_id "jcn_only_AD.199"; transcript_id "jcn_only_AD.199"; gene_name "CUFF.1975"; flanks "150784291-,150813880-"; structure "1^,2^"; splice_chain "150784291^,150787634^"; psi "0.666667";
chr7	juncbase	jcn_only_AD	150783147	150813880	.	-	.	gene_id "jcn_only_AD.200"; transcript_id "jcn_only_AD.200"; gene_name "CUFF.1975"; flanks "150783147-,150813880-"; structure "1^,2^"; splice_chain "150783147^,150787634^"; psi "0.699495";
chr7	juncbase	jcn_only_AD	150783096	150813880	.	-	.	gene_id "jcn_only_AD.201"; transcript_id "jcn_only_AD.201"; gene_name "CUFF.1975"; flanks "150783096-,150813880-"; structure "1^,2^"; splice_chain "150783096^,150787634^"; psi "0.571171";
chr19	juncbase	jcn_only_AD	33968953	33954968	.	-	.	gene_id "jcn_only_AD.202"; transcript_id "jcn_only_AD.202"; gene_name "CUFF.1975"; flanks "33968953-,33954968-"; structure "1^,2^"; splice_chain "33968953^,33968952^"; psi "0.000201";
chr19	juncbase	jcn_only_AA	1438427	1438810	.	-	.	gene_id "jcn_only_AA.159"; transcript_id "jcn_only_AA.159"; gene_name "CUFF.1975"; flanks "1438427^,1438810^"; structure "1-,2-"; splice_chain "1438806-,1438810-"; psi "0.109800";
chr5	juncbase	jcn_only_AD	149785822	149782875	.	-	.	gene_id "jcn_only_AD.203"; transcript_id "jcn_only_AD.203"; gene_name "CUFF.1975"; flanks "149785822-,149782875-"; structure "1^,2^"; splice_chain "149785822^,149784243^"; psi "0.198200";
chr7	juncbase	cassette	117368143	117364786	.	-	.	gene_id "cassette.166"; transcript_id "cassette.166"; gene_name "CUFF.1975"; flanks "117368143^,117364786-"; structure "0,1-2^"; splice_chain ",117365311-117365106^"; psi "0.339400";
chr11	juncbase	intron_retention	67771127	67770645	.	-	.	gene_id "intron_retention.195"; transcript_id "intron_retention.195"; gene_name "CUFF.1975"; flanks "67771127-,67770645^"; structure "0,1^2-"; splice_chain ",67771127^67770645-"; psi "0.097800";
chr1	juncbase	intron_retention	200882751	200882989	.	-	.	gene_id "intron_retention.196"; transcript_id "intron_retention.196"; gene_name "CUFF.1975"; flanks "200882751-,200882989^"; structure "0,1^2-"; splice_chain ",200882751^200882989-"; psi "0.513900";
chr16	juncbase	cassette	70380951	70389388	.	-	.	gene_id "cassette.167"; transcript_id "cassette.167"; gene_name "CUFF.1975"; flanks "70380951^,70389388-"; structure "0,1-2^"; splice_chain ",70384460-70384508^"; psi "0.759300";
chrX	juncbase	intron_retention	107335066	107369307	.	-	.	gene_id "intron_retention.197"; transcript_id "intron_retention.197"; gene_name "CUFF.1975"; flanks "107335066-,107369307^"; structure "0,1^2-"; splice_chain ",107335066^107369307-"; psi "0.234400";
chr11	juncbase	intron_retention	119291579	119291045	.	-	.	gene_id "intron_retention.198"; transcript_id "intron_retention.198"; gene_name "CUFF.1975"; flanks "119291579-,119291045^"; structure "0,1^2-"; splice_chain ",119291579^119291045-"; psi "0.966700";
chr15	juncbase	jcn_only_AD	66789980	66787757	.	-	.	gene_id "jcn_only_AD.204"; transcript_id "jcn_only_AD.204"; gene_name "CUFF.1975"; flanks "66789980-,66787757-"; structure "1^,2^"; splice_chain "66789980^,66789828^"; psi "0.967500";
chr11	juncbase	intron_retention	65479750	65479821	.	-	.	gene_id "intron_retention.199"; transcript_id "intron_retention.199"; gene_name "CUFF.1975"; flanks "65479750-,65479821^"; structure "0,1^2-"; splice_chain ",65479750^65479821-"; psi "0.947000";
chr7	juncbase	jcn_only_AA	22396449	22357656	.	-	.	gene_id "jcn_only_AA.160"; transcript_id "jcn_only_AA.160"; gene_name "CUFF.1975"; flanks "22396449^,22357656^"; structure "1-,2-"; splice_chain "22396230-,22357656-"; psi "0.239400";
chr7	juncbase	jcn_only_AD	150784159	150813880	.	-	.	gene_id "jcn_only_AD.205"; transcript_id "jcn_only_AD.205"; gene_name "CUFF.1975"; flanks "150784159-,150813880-"; structure "1^,2^"; splice_chain "150784159^,150809331^"; psi "0.427911";
chr7	juncbase	jcn_only_AD	150784291	150813880	.	-	.	gene_id "jcn_only_AD.206"; transcript_id "jcn_only_AD.206"; gene_name "CUFF.1975"; flanks "150784291-,150813880-"; structure "1^,2^"; splice_chain "150784291^,150809331^"; psi "0.154797";
chr7	juncbase	jcn_only_AD	150783147	150813880	.	-	.	gene_id "jcn_only_AD.207"; transcript_id "jcn_only_AD.207"; gene_name "CUFF.1975"; flanks "150783147-,150813880-"; structure "1^,2^"; splice_chain "150783147^,150809331^"; psi "0.175706";
chr7	juncbase	jcn_only_AD	150787634	150813880	.	-	.	gene_id "jcn_only_AD.208"; transcript_id "jcn_only_AD.208"; gene_name "CUFF.1975"; flanks "150787634-,150813880-"; structure "1^,2^"; splice_chain "150787634^,150809331^"; psi "0.083891";
chr7	juncbase	jcn_only_AD	150783096	150813880	.	-	.	gene_id "jcn_only_AD.209"; transcript_id "jcn_only_AD.209"; gene_name "CUFF.1975"; flanks "150783096-,150813880-"; structure "1^,2^"; splice_chain "150783096^,150809331^"; psi "0.108711";
chr12	juncbase	intron_retention	13364474	13367970	.	-	.	gene_id "intron_retention.200"; transcript_id "intron_retention.200"; gene_name "CUFF.1975"; flanks "13364474-,13367970^"; structure "0,1^2-"; splice_chain ",13364474^13367970-"; psi "0.114000";
chrX	juncbase	jcn_only_AD	106235518	106224707	.	-	.	gene_id "jcn_only_AD.210"; transcript_id "jcn_only_AD.210"; gene_name "CUFF.1975"; flanks "106235518-,106224707-"; structure "1^,2^"; splice_chain "106235518^,106228326^"; psi "0.117600";
chr11	juncbase	intron_retention	119059576	119059714	.	-	.	gene_id "intron_retention.201"; transcript_id "intron_retention.201"; gene_name "CUFF.1975"; flanks "119059576-,119059714^"; structure "0,1^2-"; splice_chain ",119059576^119059714-"; psi "0.030400";
chr17	juncbase	jcn_only_AA	1617665	1617308	.	-	.	gene_id "jcn_only_AA.161"; transcript_id "jcn_only_AA.161"; gene_name "CUFF.1975"; flanks "1617665^,1617308^"; structure "1-,2-"; splice_chain "1617339-,1617308-"; psi "0.954900";
chr20	juncbase	cassette	30137924	30147414	.	-	.	gene_id "cassette.168"; transcript_id "cassette.168"; gene_name "CUFF.1975"; flanks "30137924^,30147414-"; structure "0,1-2^"; splice_chain ",30142549-30142632^"; psi "0.598700";
chr15	juncbase	jcn_only_AA	83357488	83350332	.	-	.	gene_id "jcn_only_AA.162"; transcript_id "jcn_only_AA.162"; gene_name "CUFF.1975"; flanks "83357488^,83350332^"; structure "1-,2-"; splice_chain "83355771-,83350332-"; psi "0.947683";
chr11	juncbase	jcn_only_AA	124767622	124766951	.	-	.	gene_id "jcn_only_AA.163"; transcript_id "jcn_only_AA.163"; gene_name "CUFF.1975"; flanks "124767622^,124766951^"; structure "1-,2-"; splice_chain "124767157-,124766951-"; psi "0.039143";
chr1	juncbase	jcn_only_AA	41485898	41483651	.	-	.	gene_id "jcn_only_AA.164"; transcript_id "jcn_only_AA.164"; gene_name "CUFF.1975"; flanks "41485898^,41483651^"; structure "1-,2-"; splice_chain "41483828-,41483651-"; psi "0.255800";
chr1	juncbase	jcn_only_AA	32541423	32557273	.	-	.	gene_id "jcn_only_AA.165"; transcript_id "jcn_only_AA.165"; gene_name "CUFF.1975"; flanks "32541423^,32557273^"; structure "1-,2-"; splice_chain "32542165-,32557273-"; psi "0.608300";
chr7	juncbase	cassette	37298786	37272799	.	-	.	gene_id "cassette.169"; transcript_id "cassette.169"; gene_name "CUFF.1975"; flanks "37298786^,37272799-"; structure "0,1-2^"; splice_chain ",37283996-37283961^"; psi "0.623700";
chr19	juncbase	intron_retention	39924158	39924058	.	-	.	gene_id "intron_retention.202"; transcript_id "intron_retention.202"; gene_name "CUFF.1975"; flanks "39924158-,39924058^"; structure "0,1^2-"; splice_chain ",39924158^39924058-"; psi "0.323700";
chr19	juncbase	jcn_only_AA	20349097	20243396	.	-	.	gene_id "jcn_only_AA.166"; transcript_id "jcn_only_AA.166"; gene_name "CUFF.1975"; flanks "20349097^,20243396^"; structure "1-,2-"; splice_chain "20287618-,20243396-"; psi "0.750042";
chr9	juncbase	cassette	137772767	137775148	.	-	.	gene_id "cassette.170"; transcript_id "cassette.170"; gene_name "CUFF.1975"; flanks "137772767^,137775148-"; structure "0,1-2^"; splice_chain ",137774372-137774485^"; psi "0.769200";
chr1	juncbase	jcn_only_AA	160137219	160141041	.	-	.	gene_id "jcn_only_AA.167"; transcript_id "jcn_only_AA.167"; gene_name "CUFF.1975"; flanks "160137219^,160141041^"; structure "1-,2-"; splice_chain "160139463-,160141041-"; psi "0.750000";
chr15	juncbase	jcn_only_AA	50830906	50822126	.	-	.	gene_id "jcn_only_AA.168"; transcript_id "jcn_only_AA.168"; gene_name "CUFF.1975"; flanks "50830906^,50822126^"; structure "1-,2-"; splice_chain "50824424-,50822126-"; psi "0.948600";
chr11	juncbase	intron_retention	102962516	102960047	.	-	.	gene_id "intron_retention.203"; transcript_id "intron_retention.203"; gene_name "CUFF.1975"; flanks "102962516-,102960047^"; structure "0,1^2-"; splice_chain ",102962516^102960047-"; psi "0.644700";
chr22	juncbase	jcn_only_AA	21829500	21828969	.	-	.	gene_id "jcn_only_AA.169"; transcript_id "jcn_only_AA.169"; gene_name "CUFF.1975"; flanks "21829500^,21828969^"; structure "1-,2-"; splice_chain "21829089-,21828969-"; psi "0.869600";
chr7	juncbase	intron_retention	117400489	117398024	.	-	.	gene_id "intron_retention.204"; transcript_id "intron_retention.204"; gene_name "CUFF.1975"; flanks "117400489-,117398024^"; structure "0,1^2-"; splice_chain ",117400489^117398024-"; psi "0.557700";
chr17	juncbase	intron_retention	6348662	6350783	.	-	.	gene_id "intron_retention.205"; transcript_id "intron_retention.205"; gene_name "CUFF.1975"; flanks "6348662-,6350783^"; structure "0,1^2-"; splice_chain ",6348662^6350783-"; psi "0.560900";
chr14	juncbase	jcn_only_AA	23390329	23392181	.	-	.	gene_id "jcn_only_AA.170"; transcript_id "jcn_only_AA.170"; gene_name "CUFF.1975"; flanks "23390329^,23392181^"; structure "1-,2-"; splice_chain "23392178-,23392181-"; psi "0.343300";
chr5	juncbase	jcn_only_AA	60240759	60224786	.	-	.	gene_id "jcn_only_AA.171"; transcript_id "jcn_only_AA.171"; gene_name "CUFF.1975"; flanks "60240759^,60224786^"; structure "1-,2-"; splice_chain "60227975-,60224786-"; psi "0.913400";
chr16	juncbase	intron_retention	57507525	57507407	.	-	.	gene_id "intron_retention.206"; transcript_id "intron_retention.206"; gene_name "CUFF.1975"; flanks "57507525-,57507407^"; structure "0,1^2-"; splice_chain ",57507525^57507407-"; psi "0.560000";
chr17	juncbase	jcn_only_AA	33640725	33648756	.	-	.	gene_id "jcn_only_AA.172"; transcript_id "jcn_only_AA.172"; gene_name "CUFF.1975"; flanks "33640725^,33648756^"; structure "1-,2-"; splice_chain "33648754-,33648756-"; psi "0.357800";
chr6	juncbase	jcn_only_AD	161514871	161518112	.	-	.	gene_id "jcn_only_AD.211"; transcript_id "jcn_only_AD.211"; gene_name "CUFF.1975"; flanks "161514871-,161518112-"; structure "1^,2^"; splice_chain "161514871^,161514883^"; psi "0.582700";
chr2	juncbase	intron_retention	677473	680044	.	-	.	gene_id "intron_retention.207"; transcript_id "intron_retention.207"; gene_name "CUFF.1975"; flanks "677473-,680044^"; structure "0,1^2-"; splice_chain ",677473^680044-"; psi "0.035100";
chr12	juncbase	jcn_only_AA	333567	333282	.	-	.	gene_id "jcn_only_AA.173"; transcript_id "jcn_only_AA.173"; gene_name "CUFF.1975"; flanks "333567^,333282^"; structure "1-,2-"; splice_chain "333295-,333282-"; psi "0.815900";
chr1	juncbase	cassette	158464192	158444457	.	-	.	gene_id "cassette.171"; transcript_id "cassette.171"; gene_name "CUFF.1975"; flanks "158464192^,158444457-"; structure "0,1-2^"; splice_chain ",158451592-158449695^"; psi "0.567300";
chr10	juncbase	cassette	5077808	5138602	.	-	.	gene_id "cassette.172"; transcript_id "cassette.172"; gene_name "CUFF.1975"; flanks "5077808^,5138602-"; structure "0,1-2^"; splice_chain ",5120062-5120169^"; psi "0.459600";
chr10	juncbase	jcn_only_AD	73887840	73862170	.	-	.	gene_id "jcn_only_AD.212"; transcript_id "jcn_only_AD.212"; gene_name "CUFF.1975"; flanks "73887840-,73862170-"; structure "1^,2^"; splice_chain "73887840^,73862608^"; psi "0.534900";
chr22	juncbase	cassette	47193517	47287162	.	-	.	gene_id "cassette.173"; transcript_id "cassette.173"; gene_name "CUFF.1975"; flanks "47193517^,47287162-"; structure "0,1-2^"; splice_chain ",47274549-47274619^"; psi "0.926300";
chr4	juncbase	cassette	77116860	77102254	.	-	.	gene_id "cassette.174"; transcript_id "cassette.174"; gene_name "CUFF.1975"; flanks "77116860^,77102254-"; structure "0,1-2^"; splice_chain ",77105933-77105810^"; psi "0.613600";
chr7	juncbase	jcn_only_AD	117431345	117424508	.	-	.	gene_id "jcn_only_AD.213"; transcript_id "jcn_only_AD.213"; gene_name "CUFF.1975"; flanks "117431345-,117424508-"; structure "1^,2^"; splice_chain "117431345^,117431182^"; psi "0.545500";
chr21	juncbase	jcn_only_AA	15664068	15678017	.	-	.	gene_id "jcn_only_AA.174"; transcript_id "jcn_only_AA.174"; gene_name "CUFF.1975"; flanks "15664068^,15678017^"; structure "1-,2-"; splice_chain "15671759-,15678017-"; psi "0.335300";
chr3	juncbase	intron_retention	125745178	125741775	.	-	.	gene_id "intron_retention.208"; transcript_id "intron_retention.208"; gene_name "CUFF.1975"; flanks "125745178-,125741775^"; structure "0,1^2-"; splice_chain ",125745178^125741775-"; psi "0.512500";
chr9	juncbase	intron_retention	130940988	130940769	.	-	.	gene_id "intron_retention.209"; transcript_id "intron_retention.209"; gene_name "CUFF.1975"; flanks "130940988-,130940769^"; structure "0,1^2-"; splice_chain ",130940988^130940769-"; psi "0.083300";
chr4	juncbase	cassette	70464964	70460967	.	-	.	gene_id "cassette.175"; transcript_id "cassette.175"; gene_name "CUFF.1975"; flanks "70464964^,70460967-"; structure "0,1-2^"; splice_chain ",70462099-70461968^"; psi "0.315300";
chr16	juncbase	intron_retention	3119110	3119282	.	-	.	gene_id "intron_retention.210"; transcript_id "intron_retention.210"; gene_name "CUFF.1975"; flanks "3119110-,3119282^"; structure "0,1^2-"; splice_chain ",3119110^3119282-"; psi "0.632100";
chr16	juncbase	jcn_only_AD	4411986	4411470	.	-	.	gene_id "jcn_only_AD.214"; transcript_id "jcn_only_AD.214"; gene_name "CUFF.1975"; flanks "4411986-,4411470-"; structure "1^,2^"; splice_chain "4411986^,4411750^"; psi "0.780100";
chr17	juncbase	intron_retention	79895069	79894737	.	-	.	gene_id "intron_retention.211"; transcript_id "intron_retention.211"; gene_name "CUFF.1975"; flanks "79895069-,79894737^"; structure "0,1^2-"; splice_chain ",79895069^79894737-"; psi "0.566300";
chr1	juncbase	cassette	167190195	167301707	.	-	.	gene_id "cassette.176"; transcript_id "cassette.176"; gene_name "CUFF.1975"; flanks "167190195^,167301707-"; structure "0,1-2^"; splice_chain ",167272711-167272811^"; psi "0.504200";
chr1	juncbase	cassette	167210847	167301707	.	-	.	gene_id "cassette.177"; transcript_id "cassette.177"; gene_name "CUFF.1975"; flanks "167210847^,167301707-"; structure "0,1-2^"; splice_chain ",167272711-167272811^"; psi "0.504200";
chr2	juncbase	intron_retention	27700084	27699593	.	-	.	gene_id "intron_retention.212"; transcript_id "intron_retention.212"; gene_name "CUFF.1975"; flanks "27700084-,27699593^"; structure "0,1^2-"; splice_chain ",27700084^27699593-"; psi "0.152300";
chr3	juncbase	cassette	33557515	33543260	.	-	.	gene_id "cassette.178"; transcript_id "cassette.178"; gene_name "CUFF.1975"; flanks "33557515^,33543260-"; structure "0,1-2^"; splice_chain ",33552256-33552050^"; psi "0.625700";
chr11	juncbase	intron_retention	10823596	10823321	.	-	.	gene_id "intron_retention.213"; transcript_id "intron_retention.213"; gene_name "CUFF.1975"; flanks "10823596-,10823321^"; structure "0,1^2-"; splice_chain ",10823596^10823321-"; psi "0.492800";
chr16	juncbase	cassette	66613795	66620900	.	-	.	gene_id "cassette.179"; transcript_id "cassette.179"; gene_name "CUFF.1975"; flanks "66613795^,66620900-"; structure "0,1-2^"; splice_chain ",66613929-66614087^"; psi "0.832900";
chr4	juncbase	jcn_only_AA	661795	663838	.	-	.	gene_id "jcn_only_AA.175"; transcript_id "jcn_only_AA.175"; gene_name "CUFF.1975"; flanks "661795^,663838^"; structure "1-,2-"; splice_chain "663835-,663838-"; psi "0.138600";
chr7	juncbase	intron_retention	107204654	107205033	.	-	.	gene_id "intron_retention.214"; transcript_id "intron_retention.214"; gene_name "CUFF.1975"; flanks "107204654-,107205033^"; structure "0,1^2-"; splice_chain ",107204654^107205033-"; psi "0.023500";
chr4	juncbase	intron_retention	57302094	57302428	.	-	.	gene_id "intron_retention.215"; transcript_id "intron_retention.215"; gene_name "CUFF.1975"; flanks "57302094-,57302428^"; structure "0,1^2-"; splice_chain ",57302094^57302428-"; psi "0.737200";
chr9	juncbase	jcn_only_AD	139794972	139802522	.	-	.	gene_id "jcn_only_AD.215"; transcript_id "jcn_only_AD.215"; gene_name "CUFF.1975"; flanks "139794972-,139802522-"; structure "1^,2^"; splice_chain "139794972^,139795128^"; psi "0.977699";
chr6	juncbase	cassette	112386200	112389408	.	-	.	gene_id "cassette.180"; transcript_id "cassette.180"; gene_name "CUFF.1975"; flanks "112386200^,112389408-"; structure "0,1-2^"; splice_chain ",112388172-112388235^"; psi "0.400700";
chr11	juncbase	jcn_only_AD	104916018	104915385	.	-	.	gene_id "jcn_only_AD.216"; transcript_id "jcn_only_AD.216"; gene_name "CUFF.1975"; flanks "104916018-,104915385-"; structure "1^,2^"; splice_chain "104916018^,104915918^"; psi "0.872685";
chr11	juncbase	jcn_only_AD	104972135	104915385	.	-	.	gene_id "jcn_only_AD.217"; transcript_id "jcn_only_AD.217"; gene_name "CUFF.1975"; flanks "104972135-,104915385-"; structure "1^,2^"; splice_chain "104972135^,104915918^"; psi "0.461538";
chr11	juncbase	intron_retention	829540	829968	.	-	.	gene_id "intron_retention.216"; transcript_id "intron_retention.216"; gene_name "CUFF.1975"; flanks "829540-,829968^"; structure "0,1^2-"; splice_chain ",829540^829968-"; psi "0.093200";
chr12	juncbase	cassette	113603449	113601079	.	-	.	gene_id "cassette.181"; transcript_id "cassette.181"; gene_name "CUFF.1975"; flanks "113603449^,113601079-"; structure "0,1-2^"; splice_chain ",113602090-113601872^"; psi "0.957400";
chr1	juncbase	cassette	11074022	11076901	.	-	.	gene_id "cassette.182"; transcript_id "cassette.182"; gene_name "CUFF.1975"; flanks "11074022^,11076901-"; structure "0,1-2^"; splice_chain ",11075581-11075703^"; psi "0.135200";
chr4	juncbase	jcn_only_AA	74486156	74477546	.	-	.	gene_id "jcn_only_AA.176"; transcript_id "jcn_only_AA.176"; gene_name "CUFF.1975"; flanks "74486156^,74477546^"; structure "1-,2-"; splice_chain "74481653-,74477546-"; psi "0.029000";
chr17	juncbase	jcn_only_AA	79995326	79994889	.	-	.	gene_id "jcn_only_AA.177"; transcript_id "jcn_only_AA.177"; gene_name "CUFF.1975"; flanks "79995326^,79994889^"; structure "1-,2-"; splice_chain "79994964-,79994889-"; psi "0.579500";
chr7	juncbase	jcn_only_AD	65579901	65592691	.	-	.	gene_id "jcn_only_AD.218"; transcript_id "jcn_only_AD.218"; gene_name "CUFF.1975"; flanks "65579901-,65592691-"; structure "1^,2^"; splice_chain "65579901^,65591630^"; psi "0.919452";
chr7	juncbase	jcn_only_AD	65579957	65592691	.	-	.	gene_id "jcn_only_AD.219"; transcript_id "jcn_only_AD.219"; gene_name "CUFF.1975"; flanks "65579957-,65592691-"; structure "1^,2^"; splice_chain "65579957^,65591630^"; psi "0.945749";
chr10	juncbase	cassette	119798483	119774621	.	-	.	gene_id "cassette.183"; transcript_id "cassette.183"; gene_name "CUFF.1975"; flanks "119798483^,119774621-"; structure "0,1-2^"; splice_chain ",119793552-119793493^"; psi "0.892900";
chr12	juncbase	cassette	22659645	22643152	.	-	.	gene_id "cassette.184"; transcript_id "cassette.184"; gene_name "CUFF.1975"; flanks "22659645^,22643152-"; structure "0,1-2^"; splice_chain ",22646271-22646157^"; psi "0.923500";
chr19	juncbase	intron_retention	54657577	54659047	.	-	.	gene_id "intron_retention.217"; transcript_id "intron_retention.217"; gene_name "CUFF.1975"; flanks "54657577-,54659047^"; structure "0,1^2-"; splice_chain ",54657577^54659047-"; psi "0.037000";
chr2	juncbase	intron_retention	260085	253115	.	-	.	gene_id "intron_retention.218"; transcript_id "intron_retention.218"; gene_name "CUFF.1975"; flanks "260085-,253115^"; structure "0,1^2-"; splice_chain ",260085^253115-"; psi "0.723400";
chr1	juncbase	intron_retention	110212193	110213936	.	-	.	gene_id "intron_retention.219"; transcript_id "intron_retention.219"; gene_name "CUFF.1975"; flanks "110212193-,110213936^"; structure "0,1^2-"; splice_chain ",110212193^110213936-"; psi "0.233300";
chr7	juncbase	cassette	54617863	54636824	.	-	.	gene_id "cassette.185"; transcript_id "cassette.185"; gene_name "CUFF.1975"; flanks "54617863^,54636824-"; structure "0,1-2^"; splice_chain ",54621560-54621766^"; psi "0.200800";
chr18	juncbase	jcn_only_AA	77875533	77905318	.	-	.	gene_id "jcn_only_AA.178"; transcript_id "jcn_only_AA.178"; gene_name "CUFF.1975"; flanks "77875533^,77905318^"; structure "1-,2-"; splice_chain "77890986-,77905318-"; psi "0.132600";
chr1	juncbase	jcn_only_AD	31769922	31782891	.	-	.	gene_id "jcn_only_AD.220"; transcript_id "jcn_only_AD.220"; gene_name "CUFF.1975"; flanks "31769922-,31782891-"; structure "1^,2^"; splice_chain "31769922^,31769943^"; psi "0.811325";
chr14	juncbase	jcn_only_AA	69558391	69542128	.	-	.	gene_id "jcn_only_AA.179"; transcript_id "jcn_only_AA.179"; gene_name "CUFF.1975"; flanks "69558391^,69542128^"; structure "1-,2-"; splice_chain "69557873-,69542128-"; psi "0.930600";
chr16	juncbase	intron_retention	30004961	30004878	.	-	.	gene_id "intron_retention.220"; transcript_id "intron_retention.220"; gene_name "CUFF.1975"; flanks "30004961-,30004878^"; structure "0,1^2-"; splice_chain ",30004961^30004878-"; psi "0.252100";
chr8	juncbase	jcn_only_AD	56685828	56676539	.	-	.	gene_id "jcn_only_AD.221"; transcript_id "jcn_only_AD.221"; gene_name "CUFF.1975"; flanks "56685828-,56676539-"; structure "1^,2^"; splice_chain "56685828^,56685786^"; psi "0.672024";
chr5	juncbase	intron_retention	139915123	139916923	.	-	.	gene_id "intron_retention.221"; transcript_id "intron_retention.221"; gene_name "CUFF.1975"; flanks "139915123-,139916923^"; structure "0,1^2-"; splice_chain ",139915123^139916923-"; psi "0.329000";
chr18	juncbase	jcn_only_AA	11999186	12009882	.	-	.	gene_id "jcn_only_AA.180"; transcript_id "jcn_only_AA.180"; gene_name "CUFF.1975"; flanks "11999186^,12009882^"; structure "1-,2-"; splice_chain "12008332-,12009882-"; psi "0.948500";
chr11	juncbase	jcn_only_AD	8615630	8502161	.	-	.	gene_id "jcn_only_AD.222"; transcript_id "jcn_only_AD.222"; gene_name "CUFF.1975"; flanks "8615630-,8502161-"; structure "1^,2^"; splice_chain "8615630^,8615291^"; psi "0.676474";
chr3	juncbase	jcn_only_AA	107560952	107559251	.	-	.	gene_id "jcn_only_AA.181"; transcript_id "jcn_only_AA.181"; gene_name "CUFF.1975"; flanks "107560952^,107559251^"; structure "1-,2-"; splice_chain "107560866-,107559251-"; psi "0.511900";
chrX	juncbase	jcn_only_AD	46387785	46382560	.	-	.	gene_id "jcn_only_AD.223"; transcript_id "jcn_only_AD.223"; gene_name "CUFF.1975"; flanks "46387785-,46382560-"; structure "1^,2^"; splice_chain "46387785^,46387770^"; psi "0.867100";
chr19	juncbase	intron_retention	4306209	4323021	.	-	.	gene_id "intron_retention.222"; transcript_id "intron_retention.222"; gene_name "CUFF.1975"; flanks "4306209-,4323021^"; structure "0,1^2-"; splice_chain ",4306209^4323021-"; psi "0.359000";
chr3	juncbase	cassette	125786790	125752521	.	-	.	gene_id "cassette.186"; transcript_id "cassette.186"; gene_name "CUFF.1975"; flanks "125786790^,125752521-"; structure "0,1-2^"; splice_chain ",125769893-125769786^"; psi "0.689900";
chr6	juncbase	cassette	145142154	145148747	.	-	.	gene_id "cassette.187"; transcript_id "cassette.187"; gene_name "CUFF.1975"; flanks "145142154^,145148747-"; structure "0,1-2^"; splice_chain ",145148484-145148522^"; psi "0.611100";
chr7	juncbase	intron_retention	107204504	107205033	.	-	.	gene_id "intron_retention.223"; transcript_id "intron_retention.223"; gene_name "CUFF.1975"; flanks "107204504-,107205033^"; structure "0,1^2-"; splice_chain ",107204504^107205033-"; psi "0.967700";
chr2	juncbase	cassette	46819614	46808730	.	-	.	gene_id "cassette.188"; transcript_id "cassette.188"; gene_name "CUFF.1975"; flanks "46819614^,46808730-"; structure "0,1-2^"; splice_chain ",46815318-46815214^"; psi "0.872500";
chr21	juncbase	jcn_only_AA	30949284	30934169	.	-	.	gene_id "jcn_only_AA.182"; transcript_id "jcn_only_AA.182"; gene_name "CUFF.1975"; flanks "30949284^,30934169^"; structure "1-,2-"; splice_chain "30934170-,30934169-"; psi "0.002500";
chr17	juncbase	jcn_only_AD	79994058	79993939	.	-	.	gene_id "jcn_only_AD.224"; transcript_id "jcn_only_AD.224"; gene_name "CUFF.1975"; flanks "79994058-,79993939-"; structure "1^,2^"; splice_chain "79994058^,79994023^"; psi "0.876905";
chr17	juncbase	jcn_only_AD	79994067	79993939	.	-	.	gene_id "jcn_only_AD.225"; transcript_id "jcn_only_AD.225"; gene_name "CUFF.1975"; flanks "79994067-,79993939-"; structure "1^,2^"; splice_chain "79994067^,79994023^"; psi "0.959386";
chr15	juncbase	jcn_only_AA	44881450	44878048	.	-	.	gene_id "jcn_only_AA.183"; transcript_id "jcn_only_AA.183"; gene_name "CUFF.1975"; flanks "44881450^,44878048^"; structure "1-,2-"; splice_chain "44880836-,44878048-"; psi "0.539600";
chr15	juncbase	jcn_only_AD	74754368	74758377	.	-	.	gene_id "jcn_only_AD.226"; transcript_id "jcn_only_AD.226"; gene_name "CUFF.1975"; flanks "74754368-,74758377-"; structure "1^,2^"; splice_chain "74754368^,74754372^"; psi "0.153488";
chr15	juncbase	cassette	29131424	29140666	.	-	.	gene_id "cassette.189"; transcript_id "cassette.189"; gene_name "CUFF.1975"; flanks "29131424^,29140666-"; structure "0,1-2^"; splice_chain ",29139020-29139190^"; psi "0.940000";
chr16	juncbase	intron_retention	4466786	4445340	.	-	.	gene_id "intron_retention.224"; transcript_id "intron_retention.224"; gene_name "CUFF.1975"; flanks "4466786-,4445340^"; structure "0,1^2-"; splice_chain ",4466786^4445340-"; psi "0.725800";
chr12	juncbase	jcn_only_AA	26148063	26208212	.	-	.	gene_id "jcn_only_AA.184"; transcript_id "jcn_only_AA.184"; gene_name "CUFF.1975"; flanks "26148063^,26208212^"; structure "1-,2-"; splice_chain "26208169-,26208212-"; psi "0.922100";
chr10	juncbase	jcn_only_AA	78647049	78637648	.	-	.	gene_id "jcn_only_AA.185"; transcript_id "jcn_only_AA.185"; gene_name "CUFF.1975"; flanks "78647049^,78637648^"; structure "1-,2-"; splice_chain "78644775-,78637648-"; psi "0.486546";
chr10	juncbase	jcn_only_AA	78647049	78637651	.	-	.	gene_id "jcn_only_AA.186"; transcript_id "jcn_only_AA.186"; gene_name "CUFF.1975"; flanks "78647049^,78637651^"; structure "1-,2-"; splice_chain "78644775-,78637651-"; psi "0.739028";
chr1	juncbase	intron_retention	245133100	245180544	.	-	.	gene_id "intron_retention.225"; transcript_id "intron_retention.225"; gene_name "CUFF.1975"; flanks "245133100-,245180544^"; structure "0,1^2-"; splice_chain ",245133100^245180544-"; psi "0.867600";
chr7	juncbase	intron_retention	107215755	107216854	.	-	.	gene_id "intron_retention.226"; transcript_id "intron_retention.226"; gene_name "CUFF.1975"; flanks "107215755-,107216854^"; structure "0,1^2-"; splice_chain ",107215755^107216854-"; psi "0.027900";
chr8	juncbase	jcn_only_AD	81083660	80976828	.	-	.	gene_id "jcn_only_AD.227"; transcript_id "jcn_only_AD.227"; gene_name "CUFF.1975"; flanks "81083660-,80976828-"; structure "1^,2^"; splice_chain "81083660^,81083442^"; psi "0.610915";
chr8	juncbase	jcn_only_AD	81130704	80976828	.	-	.	gene_id "jcn_only_AD.228"; transcript_id "jcn_only_AD.228"; gene_name "CUFF.1975"; flanks "81130704-,80976828-"; structure "1^,2^"; splice_chain "81130704^,81083442^"; psi "0.500000";
chr17	juncbase	jcn_only_AD	46990327	46993438	.	-	.	gene_id "jcn_only_AD.229"; transcript_id "jcn_only_AD.229"; gene_name "CUFF.1975"; flanks "46990327-,46993438-"; structure "1^,2^"; splice_chain "46990327^,46990383^"; psi "0.497400";
chrX	juncbase	intron_retention	152989471	152988743	.	-	.	gene_id "intron_retention.227"; transcript_id "intron_retention.227"; gene_name "CUFF.1975"; flanks "152989471-,152988743^"; structure "0,1^2-"; splice_chain ",152989471^152988743-"; psi "0.896000";
chr8	juncbase	jcn_only_AA	98817692	98827556	.	-	.	gene_id "jcn_only_AA.187"; transcript_id "jcn_only_AA.187"; gene_name "CUFF.1975"; flanks "98817692^,98827556^"; structure "1-,2-"; splice_chain "98827532-,98827556-"; psi "0.707100";
chr6	juncbase	jcn_only_AD	150206809	150240323	.	-	.	gene_id "jcn_only_AD.230"; transcript_id "jcn_only_AD.230"; gene_name "CUFF.1975"; flanks "150206809-,150240323-"; structure "1^,2^"; splice_chain "150206809^,150217375^"; psi "0.275900";
chr12	juncbase	intron_retention	56575266	56574885	.	-	.	gene_id "intron_retention.228"; transcript_id "intron_retention.228"; gene_name "CUFF.1975"; flanks "56575266-,56574885^"; structure "0,1^2-"; splice_chain ",56575266^56574885-"; psi "0.585500";
chr12	juncbase	cassette	120148345	120146123	.	-	.	gene_id "cassette.190"; transcript_id "cassette.190"; gene_name "CUFF.1975"; flanks "120148345^,120146123-"; structure "0,1-2^"; splice_chain ",120148191-120148056^"; psi "0.580600";
chr17	juncbase	intron_retention	79358929	79358832	.	-	.	gene_id "intron_retention.229"; transcript_id "intron_retention.229"; gene_name "CUFF.1975"; flanks "79358929-,79358832^"; structure "0,1^2-"; splice_chain ",79358929^79358832-"; psi "0.008900";
chr5	juncbase	jcn_only_AA	178050257	178046897	.	-	.	gene_id "jcn_only_AA.188"; transcript_id "jcn_only_AA.188"; gene_name "CUFF.1975"; flanks "178050257^,178046897^"; structure "1-,2-"; splice_chain "178047674-,178046897-"; psi "0.145350";
chr12	juncbase	cassette	12765121	12788711	.	-	.	gene_id "cassette.191"; transcript_id "cassette.191"; gene_name "CUFF.1975"; flanks "12765121^,12788711-"; structure "0,1-2^"; splice_chain ",12785423-12785525^"; psi "0.842100";
chr12	juncbase	intron_retention	56579939	56578895	.	-	.	gene_id "intron_retention.230"; transcript_id "intron_retention.230"; gene_name "CUFF.1975"; flanks "56579939-,56578895^"; structure "0,1^2-"; splice_chain ",56579939^56578895-"; psi "0.665200";
chr2	juncbase	intron_retention	109111941	109113426	.	-	.	gene_id "intron_retention.231"; transcript_id "intron_retention.231"; gene_name "CUFF.1975"; flanks "109111941-,109113426^"; structure "0,1^2-"; splice_chain ",109111941^109113426-"; psi "0.166700";
chr4	juncbase	jcn_only_AA	20525800	20530572	.	-	.	gene_id "jcn_only_AA.189"; transcript_id "jcn_only_AA.189"; gene_name "CUFF.1975"; flanks "20525800^,20530572^"; structure "1-,2-"; splice_chain "20526772-,20530572-"; psi "0.321400";
chr15	juncbase	cassette	47687758	47672792	.	-	.	gene_id "cassette.192"; transcript_id "cassette.192"; gene_name "CUFF.1975"; flanks "47687758^,47672792-"; structure "0,1-2^"; splice_chain ",47685682-47685519^"; psi "0.263200";
chr17	juncbase	jcn_only_AA	46986182	46993438	.	-	.	gene_id "jcn_only_AA.190"; transcript_id "jcn_only_AA.190"; gene_name "CUFF.1975"; flanks "46986182^,46993438^"; structure "1-,2-"; splice_chain "46988170-,46993438-"; psi "0.277300";
chr12	juncbase	cassette	58017881	58018649	.	-	.	gene_id "cassette.193"; transcript_id "cassette.193"; gene_name "CUFF.1975"; flanks "58017881^,58018649-"; structure "0,1-2^"; splice_chain ",58018283-58018389^"; psi "0.963000";
chr3	juncbase	cassette	38315866	38316480	.	-	.	gene_id "cassette.194"; transcript_id "cassette.194"; gene_name "CUFF.1975"; flanks "38315866^,38316480-"; structure "0,1-2^"; splice_chain ",38316095-38316249^"; psi "0.203700";
chr7	juncbase	jcn_only_AD	156685622	156619438	.	-	.	gene_id "jcn_only_AD.231"; transcript_id "jcn_only_AD.231"; gene_name "CUFF.1975"; flanks "156685622-,156619438-"; structure "1^,2^"; splice_chain "156685622^,156626447^"; psi "0.402988";
chr3	juncbase	cassette	49377357	49365249	.	-	.	gene_id "cassette.195"; transcript_id "cassette.195"; gene_name "CUFF.1975"; flanks "49377357^,49365249-"; structure "0,1-2^"; splice_chain ",49373029-49372902^"; psi "0.830300";
chr17	juncbase	jcn_only_AD	79898626	79894069	.	-	.	gene_id "jcn_only_AD.232"; transcript_id "jcn_only_AD.232"; gene_name "CUFF.1975"; flanks "79898626-,79894069-"; structure "1^,2^"; splice_chain "79898626^,79894624^"; psi "0.028311";
chr17	juncbase	jcn_only_AD	79900172	79894069	.	-	.	gene_id "jcn_only_AD.233"; transcript_id "jcn_only_AD.233"; gene_name "CUFF.1975"; flanks "79900172-,79894069-"; structure "1^,2^"; splice_chain "79900172^,79894624^"; psi "0.014916";
chr12	juncbase	jcn_only_AD	22631247	22627825	.	-	.	gene_id "jcn_only_AD.234"; transcript_id "jcn_only_AD.234"; gene_name "CUFF.1975"; flanks "22631247-,22627825-"; structure "1^,2^"; splice_chain "22631247^,22630196^"; psi "0.750800";
chr1	juncbase	cassette	15753780	15755089	.	-	.	gene_id "cassette.196"; transcript_id "cassette.196"; gene_name "CUFF.1975"; flanks "15753780^,15755089-"; structure "0,1-2^"; splice_chain ",15754394-15754505^"; psi "0.581400";
chr5	juncbase	jcn_only_AD	178050257	178047674	.	-	.	gene_id "jcn_only_AD.235"; transcript_id "jcn_only_AD.235"; gene_name "CUFF.1975"; flanks "178050257-,178047674-"; structure "1^,2^"; splice_chain "178050257^,178049394^"; psi "0.859600";
chr19	juncbase	jcn_only_AA	11468415	11470283	.	-	.	gene_id "jcn_only_AA.191"; transcript_id "jcn_only_AA.191"; gene_name "CUFF.1975"; flanks "11468415^,11470283^"; structure "1-,2-"; splice_chain "11470147-,11470283-"; psi "0.507030";
chr19	juncbase	jcn_only_AA	11468415	11470208	.	-	.	gene_id "jcn_only_AA.192"; transcript_id "jcn_only_AA.192"; gene_name "CUFF.1975"; flanks "11468415^,11470208^"; structure "1-,2-"; splice_chain "11470147-,11470208-"; psi "0.801804";
chr11	juncbase	intron_retention	417325	410027	.	-	.	gene_id "intron_retention.232"; transcript_id "intron_retention.232"; gene_name "CUFF.1975"; flanks "417325-,410027^"; structure "0,1^2-"; splice_chain ",417325^410027-"; psi "0.691500";
chr11	juncbase	jcn_only_AD	61588940	61593755	.	-	.	gene_id "jcn_only_AD.236"; transcript_id "jcn_only_AD.236"; gene_name "CUFF.1975"; flanks "61588940-,61593755-"; structure "1^,2^"; splice_chain "61588940^,61593609^"; psi "0.915000";
chr1	juncbase	intron_retention	110211993	110212258	.	-	.	gene_id "intron_retention.233"; transcript_id "intron_retention.233"; gene_name "CUFF.1975"; flanks "110211993-,110212258^"; structure "0,1^2-"; splice_chain ",110211993^110212258-"; psi "0.634900";
chr14	juncbase	intron_retention	77929102	77930941	.	-	.	gene_id "intron_retention.234"; transcript_id "intron_retention.234"; gene_name "CUFF.1975"; flanks "77929102-,77930941^"; structure "0,1^2-"; splice_chain ",77929102^77930941-"; psi "0.206200";
chr17	juncbase	jcn_only_AD	79995490	79994889	.	-	.	gene_id "jcn_only_AD.237"; transcript_id "jcn_only_AD.237"; gene_name "CUFF.1975"; flanks "79995490-,79994889-"; structure "1^,2^"; splice_chain "79995490^,79995326^"; psi "0.192683";
chr17	juncbase	jcn_only_AD	79995507	79994889	.	-	.	gene_id "jcn_only_AD.238"; transcript_id "jcn_only_AD.238"; gene_name "CUFF.1975"; flanks "79995507-,79994889-"; structure "1^,2^"; splice_chain "79995507^,79995326^"; psi "0.247729";
chr10	juncbase	cassette	46158990	46148507	.	-	.	gene_id "cassette.197"; transcript_id "cassette.197"; gene_name "CUFF.1975"; flanks "46158990^,46148507-"; structure "0,1-2^"; splice_chain ",46158129-46158028^"; psi "0.767200";
chr12	juncbase	cassette	49334731	49333562	.	-	.	gene_id "cassette.198"; transcript_id "cassette.198"; gene_name "CUFF.1975"; flanks "49334731^,49333562-"; structure "0,1-2^"; splice_chain ",49333890-49333780^"; psi "0.835100";
chr19	juncbase	jcn_only_AD	54656736	54657452	.	-	.	gene_id "jcn_only_AD.239"; transcript_id "jcn_only_AD.239"; gene_name "CUFF.1975"; flanks "54656736-,54657452-"; structure "1^,2^"; splice_chain "54656736^,54656819^"; psi "0.684900";
chr10	juncbase	cassette	18280232	18284585	.	-	.	gene_id "cassette.199"; transcript_id "cassette.199"; gene_name "CUFF.1975"; flanks "18280232^,18284585-"; structure "0,1-2^"; splice_chain ",18282113-18282220^"; psi "0.734700";
chr20	juncbase	jcn_only_AD	30132838	30136832	.	-	.	gene_id "jcn_only_AD.240"; transcript_id "jcn_only_AD.240"; gene_name "CUFF.1975"; flanks "30132838-,30136832-"; structure "1^,2^"; splice_chain "30132838^,30136596^"; psi "0.756300";
chr16	juncbase	jcn_only_AA	3115827	3117444	.	-	.	gene_id "jcn_only_AA.193"; transcript_id "jcn_only_AA.193"; gene_name "CUFF.1975"; flanks "3115827^,3117444^"; structure "1-,2-"; splice_chain "3117378-,3117444-"; psi "0.007700";
chr19	juncbase	intron_retention	16212219	16212870	.	-	.	gene_id "intron_retention.235"; transcript_id "intron_retention.235"; gene_name "CUFF.1975"; flanks "16212219-,16212870^"; structure "0,1^2-"; splice_chain ",16212219^16212870-"; psi "0.531700";
chr2	juncbase	jcn_only_AA	208030191	207989128	.	-	.	gene_id "jcn_only_AA.194"; transcript_id "jcn_only_AA.194"; gene_name "CUFF.1975"; flanks "208030191^,207989128^"; structure "1-,2-"; splice_chain "208013924-,207989128-"; psi "0.874200";
chr7	juncbase	jcn_only_AD	111202520	111201979	.	-	.	gene_id "jcn_only_AD.241"; transcript_id "jcn_only_AD.241"; gene_name "CUFF.1975"; flanks "111202520-,111201979-"; structure "1^,2^"; splice_chain "111202520^,111202500^"; psi "0.920800";
chr17	juncbase	cassette	80417948	80426640	.	-	.	gene_id "cassette.200"; transcript_id "cassette.200"; gene_name "CUFF.1975"; flanks "80417948^,80426640-"; structure "0,1-2^"; splice_chain ",80422163-80422306^"; psi "0.696800";
chr12	juncbase	intron_retention	53861077	53861589	.	-	.	gene_id "intron_retention.236"; transcript_id "intron_retention.236"; gene_name "CUFF.1975"; flanks "53861077-,53861589^"; structure "0,1^2-"; splice_chain ",53861077^53861589-"; psi "0.141000";
chr7	juncbase	intron_retention	54617863	54618446	.	-	.	gene_id "intron_retention.237"; transcript_id "intron_retention.237"; gene_name "CUFF.1975"; flanks "54617863-,54618446^"; structure "0,1^2-"; splice_chain ",54617863^54618446-"; psi "0.505500";
chr7	juncbase	jcn_only_AD	102256970	102251589	.	-	.	gene_id "jcn_only_AD.242"; transcript_id "jcn_only_AD.242"; gene_name "CUFF.1975"; flanks "102256970-,102251589-"; structure "1^,2^"; splice_chain "102256970^,102252519^"; psi "0.375000";
chr7	juncbase	jcn_only_AD	102257072	102251589	.	-	.	gene_id "jcn_only_AD.243"; transcript_id "jcn_only_AD.243"; gene_name "CUFF.1975"; flanks "102257072-,102251589-"; structure "1^,2^"; splice_chain "102257072^,102252519^"; psi "0.375000";
chr3	juncbase	jcn_only_AD	122786053	122808015	.	-	.	gene_id "jcn_only_AD.244"; transcript_id "jcn_only_AD.244"; gene_name "CUFF.1975"; flanks "122786053-,122808015-"; structure "1^,2^"; splice_chain "122786053^,122786422^"; psi "0.620000";
chr5	juncbase	jcn_only_AA	149784243	149782188	.	-	.	gene_id "jcn_only_AA.195"; transcript_id "jcn_only_AA.195"; gene_name "CUFF.1975"; flanks "149784243^,149782188^"; structure "1-,2-"; splice_chain "149782875-,149782188-"; psi "0.198200";
chr21	juncbase	cassette	30927373	30909706	.	-	.	gene_id "cassette.201"; transcript_id "cassette.201"; gene_name "CUFF.1975"; flanks "30927373^,30909706-"; structure "0,1-2^"; splice_chain ",30910205-30910119^"; psi "0.363600";
chr3	juncbase	cassette	27204192	27183073	.	-	.	gene_id "cassette.202"; transcript_id "cassette.202"; gene_name "CUFF.1975"; flanks "27204192^,27183073-"; structure "0,1-2^"; splice_chain ",27204092-27203952^"; psi "0.784000";
chr2	juncbase	jcn_only_AA	219222457	219222760	.	-	.	gene_id "jcn_only_AA.196"; transcript_id "jcn_only_AA.196"; gene_name "CUFF.1975"; flanks "219222457^,219222760^"; structure "1-,2-"; splice_chain "219222709-,219222760-"; psi "0.828700";
chr6	juncbase	jcn_only_AA	112375608	112382194	.	-	.	gene_id "jcn_only_AA.197"; transcript_id "jcn_only_AA.197"; gene_name "CUFF.1975"; flanks "112375608^,112382194^"; structure "1-,2-"; splice_chain "112375826-,112382194-"; psi "0.819900";
chr9	juncbase	jcn_only_AD	130966465	130953141	.	-	.	gene_id "jcn_only_AD.245"; transcript_id "jcn_only_AD.245"; gene_name "CUFF.1975"; flanks "130966465-,130953141-"; structure "1^,2^"; splice_chain "130966465^,130954011^"; psi "0.157407";
chr9	juncbase	jcn_only_AD	130954134	130953141	.	-	.	gene_id "jcn_only_AD.246"; transcript_id "jcn_only_AD.246"; gene_name "CUFF.1975"; flanks "130954134-,130953141-"; structure "1^,2^"; splice_chain "130954134^,130954011^"; psi "0.033201";
chr1	juncbase	intron_retention	27432376	27429803	.	-	.	gene_id "intron_retention.238"; transcript_id "intron_retention.238"; gene_name "CUFF.1975"; flanks "27432376-,27429803^"; structure "0,1^2-"; splice_chain ",27432376^27429803-"; psi "0.117600";
chr1	juncbase	cassette	31769922	31791956	.	-	.	gene_id "cassette.203"; transcript_id "cassette.203"; gene_name "CUFF.1975"; flanks "31769922^,31791956-"; structure "0,1-2^"; splice_chain ",31782891-31783011^"; psi "0.918800";
chrX	juncbase	jcn_only_AA	10422910	10417656	.	-	.	gene_id "jcn_only_AA.198"; transcript_id "jcn_only_AA.198"; gene_name "CUFF.1975"; flanks "10422910^,10417656^"; structure "1-,2-"; splice_chain "10417756-,10417656-"; psi "0.147100";
chr4	juncbase	cassette	162459318	162421286	.	-	.	gene_id "cassette.204"; transcript_id "cassette.204"; gene_name "CUFF.1975"; flanks "162459318^,162421286-"; structure "0,1-2^"; splice_chain ",162431576-162431550^"; psi "0.815800";
chr3	juncbase	jcn_only_AA	107596749	107586424	.	-	.	gene_id "jcn_only_AA.199"; transcript_id "jcn_only_AA.199"; gene_name "CUFF.1975"; flanks "107596749^,107586424^"; structure "1-,2-"; splice_chain "107596344-,107586424-"; psi "0.323239";
chr3	juncbase	jcn_only_AA	107596749	107595033	.	-	.	gene_id "jcn_only_AA.200"; transcript_id "jcn_only_AA.200"; gene_name "CUFF.1975"; flanks "107596749^,107595033^"; structure "1-,2-"; splice_chain "107596344-,107595033-"; psi "0.640434";
chr3	juncbase	jcn_only_AA	107596749	107591873	.	-	.	gene_id "jcn_only_AA.201"; transcript_id "jcn_only_AA.201"; gene_name "CUFF.1975"; flanks "107596749^,107591873^"; structure "1-,2-"; splice_chain "107596344-,107591873-"; psi "0.174399";
chr19	juncbase	intron_retention	39926298	39924401	.	-	.	gene_id "intron_retention.239"; transcript_id "intron_retention.239"; gene_name "CUFF.1975"; flanks "39926298-,39924401^"; structure "0,1^2-"; splice_chain ",39926298^39924401-"; psi "0.437200";
chr17	juncbase	intron_retention	79895138	79894737	.	-	.	gene_id "intron_retention.240"; transcript_id "intron_retention.240"; gene_name "CUFF.1975"; flanks "79895138-,79894737^"; structure "0,1^2-"; splice_chain ",79895138^79894737-"; psi "0.324200";
chr3	juncbase	jcn_only_AA	127309726	127299006	.	-	.	gene_id "jcn_only_AA.202"; transcript_id "jcn_only_AA.202"; gene_name "CUFF.1975"; flanks "127309726^,127299006^"; structure "1-,2-"; splice_chain "127309435-,127299006-"; psi "0.274200";
chr4	juncbase	jcn_only_AD	152097686	152096826	.	-	.	gene_id "jcn_only_AD.247"; transcript_id "jcn_only_AD.247"; gene_name "CUFF.1975"; flanks "152097686-,152096826-"; structure "1^,2^"; splice_chain "152097686^,152097677^"; psi "0.705900";
chr4	juncbase	intron_retention	2933282	2933192	.	-	.	gene_id "intron_retention.241"; transcript_id "intron_retention.241"; gene_name "CUFF.1975"; flanks "2933282-,2933192^"; structure "0,1^2-"; splice_chain ",2933282^2933192-"; psi "0.403900";
chr7	juncbase	jcn_only_AA	156629507	156556489	.	-	.	gene_id "jcn_only_AA.203"; transcript_id "jcn_only_AA.203"; gene_name "CUFF.1975"; flanks "156629507^,156556489^"; structure "1-,2-"; splice_chain "156627269-,156556489-"; psi "0.646492";
chr7	juncbase	jcn_only_AA	156629507	156626486	.	-	.	gene_id "jcn_only_AA.204"; transcript_id "jcn_only_AA.204"; gene_name "CUFF.1975"; flanks "156629507^,156626486^"; structure "1-,2-"; splice_chain "156627269-,156626486-"; psi "0.972996";
chr2	juncbase	jcn_only_AA	73285657	73269714	.	-	.	gene_id "jcn_only_AA.205"; transcript_id "jcn_only_AA.205"; gene_name "CUFF.1975"; flanks "73285657^,73269714^"; structure "1-,2-"; splice_chain "73280680-,73269714-"; psi "0.511869";
chr2	juncbase	jcn_only_AA	73285657	73277028	.	-	.	gene_id "jcn_only_AA.206"; transcript_id "jcn_only_AA.206"; gene_name "CUFF.1975"; flanks "73285657^,73277028^"; structure "1-,2-"; splice_chain "73280680-,73277028-"; psi "0.819032";
chr2	juncbase	jcn_only_AA	73285657	73268790	.	-	.	gene_id "jcn_only_AA.207"; transcript_id "jcn_only_AA.207"; gene_name "CUFF.1975"; flanks "73285657^,73268790^"; structure "1-,2-"; splice_chain "73280680-,73268790-"; psi "0.611111";
chr2	juncbase	jcn_only_AA	73285657	73268060	.	-	.	gene_id "jcn_only_AA.208"; transcript_id "jcn_only_AA.208"; gene_name "CUFF.1975"; flanks "73285657^,73268060^"; structure "1-,2-"; splice_chain "73280680-,73268060-"; psi "0.956988";
chr22	juncbase	intron_retention	21832079	21830449	.	-	.	gene_id "intron_retention.242"; transcript_id "intron_retention.242"; gene_name "CUFF.1975"; flanks "21832079-,21830449^"; structure "0,1^2-"; splice_chain ",21832079^21830449-"; psi "0.450000";
chr22	juncbase	jcn_only_AA	29684775	29687554	.	-	.	gene_id "jcn_only_AA.209"; transcript_id "jcn_only_AA.209"; gene_name "CUFF.1975"; flanks "29684775^,29687554^"; structure "1-,2-"; splice_chain "29687551-,29687554-"; psi "0.489700";
chr3	juncbase	cassette	93692518	93646251	.	-	.	gene_id "cassette.205"; transcript_id "cassette.205"; gene_name "CUFF.1975"; flanks "93692518^,93646251-"; structure "0,1-2^"; splice_chain ",93647641-93647546^"; psi "0.959200";
chr5	juncbase	jcn_only_AA	472794	472080	.	-	.	gene_id "jcn_only_AA.210"; transcript_id "jcn_only_AA.210"; gene_name "CUFF.1975"; flanks "472794^,472080^"; structure "1-,2-"; splice_chain "472708-,472080-"; psi "0.118717";
chr5	juncbase	jcn_only_AA	472794	466641	.	-	.	gene_id "jcn_only_AA.211"; transcript_id "jcn_only_AA.211"; gene_name "CUFF.1975"; flanks "472794^,466641^"; structure "1-,2-"; splice_chain "472708-,466641-"; psi "0.915772";
chr5	juncbase	jcn_only_AA	472794	471938	.	-	.	gene_id "jcn_only_AA.212"; transcript_id "jcn_only_AA.212"; gene_name "CUFF.1975"; flanks "472794^,471938^"; structure "1-,2-"; splice_chain "472708-,471938-"; psi "0.113978";
chr1	juncbase	jcn_only_AA	85724207	85718385	.	-	.	gene_id "jcn_only_AA.213"; transcript_id "jcn_only_AA.213"; gene_name "CUFF.1975"; flanks "85724207^,85718385^"; structure "1-,2-"; splice_chain "85723154-,85718385-"; psi "0.576700";
chr5	juncbase	intron_retention	54456071	54456948	.	-	.	gene_id "intron_retention.243"; transcript_id "intron_retention.243"; gene_name "CUFF.1975"; flanks "54456071-,54456948^"; structure "0,1^2-"; splice_chain ",54456071^54456948-"; psi "0.572600";
chr6	juncbase	jcn_only_AD	90193277	90276553	.	-	.	gene_id "jcn_only_AD.248"; transcript_id "jcn_only_AD.248"; gene_name "CUFF.1975"; flanks "90193277-,90276553-"; structure "1^,2^"; splice_chain "90193277^,90218677^"; psi "0.134361";
chr5	juncbase	intron_retention	140040400	140041205	.	-	.	gene_id "intron_retention.244"; transcript_id "intron_retention.244"; gene_name "CUFF.1975"; flanks "140040400-,140041205^"; structure "0,1^2-"; splice_chain ",140040400^140041205-"; psi "0.032700";
chr11	juncbase	jcn_only_AA	63999436	64001366	.	-	.	gene_id "jcn_only_AA.214"; transcript_id "jcn_only_AA.214"; gene_name "CUFF.1975"; flanks "63999436^,64001366^"; structure "1-,2-"; splice_chain "63999902-,64001366-"; psi "0.208488";
chr11	juncbase	jcn_only_AA	63999436	63999982	.	-	.	gene_id "jcn_only_AA.215"; transcript_id "jcn_only_AA.215"; gene_name "CUFF.1975"; flanks "63999436^,63999982^"; structure "1-,2-"; splice_chain "63999902-,63999982-"; psi "0.572027";
chr17	juncbase	cassette	42114780	42113668	.	-	.	gene_id "cassette.206"; transcript_id "cassette.206"; gene_name "CUFF.1975"; flanks "42114780^,42113668-"; structure "0,1-2^"; splice_chain ",42114470-42114230^"; psi "0.894400";
chr4	juncbase	jcn_only_AA	99003638	99399806	.	-	.	gene_id "jcn_only_AA.216"; transcript_id "jcn_only_AA.216"; gene_name "CUFF.1975"; flanks "99003638^,99399806^"; structure "1-,2-"; splice_chain "99393449-,99399806-"; psi "0.714300";
chr14	juncbase	intron_retention	75137465	75136829	.	-	.	gene_id "intron_retention.245"; transcript_id "intron_retention.245"; gene_name "CUFF.1975"; flanks "75137465-,75136829^"; structure "0,1^2-"; splice_chain ",75137465^75136829-"; psi "0.294100";
chr12	juncbase	jcn_only_AD	58019470	58019781	.	-	.	gene_id "jcn_only_AD.249"; transcript_id "jcn_only_AD.249"; gene_name "CUFF.1975"; flanks "58019470-,58019781-"; structure "1^,2^"; splice_chain "58019470^,58019535^"; psi "0.019300";
chr3	juncbase	intron_retention	33438537	33437772	.	-	.	gene_id "intron_retention.246"; transcript_id "intron_retention.246"; gene_name "CUFF.1975"; flanks "33438537-,33437772^"; structure "0,1^2-"; splice_chain ",33438537^33437772-"; psi "0.505300";
chr13	juncbase	cassette	21157158	21165106	.	-	.	gene_id "cassette.207"; transcript_id "cassette.207"; gene_name "CUFF.1975"; flanks "21157158^,21165106-"; structure "0,1-2^"; splice_chain ",21163950-21164006^"; psi "0.659600";
chr6	juncbase	jcn_only_AD	88066221	88074679	.	-	.	gene_id "jcn_only_AD.250"; transcript_id "jcn_only_AD.250"; gene_name "CUFF.1975"; flanks "88066221-,88074679-"; structure "1^,2^"; splice_chain "88066221^,88068919^"; psi "0.789400";
chr18	juncbase	jcn_only_AD	55711940	55833020	.	-	.	gene_id "jcn_only_AD.251"; transcript_id "jcn_only_AD.251"; gene_name "CUFF.1975"; flanks "55711940-,55833020-"; structure "1^,2^"; splice_chain "55711940^,55713020^"; psi "0.311923";
chr18	juncbase	jcn_only_AD	55712847	55833020	.	-	.	gene_id "jcn_only_AD.252"; transcript_id "jcn_only_AD.252"; gene_name "CUFF.1975"; flanks "55712847-,55833020-"; structure "1^,2^"; splice_chain "55712847^,55713020^"; psi "0.462021";
chr2	juncbase	intron_retention	9244289	9244565	.	-	.	gene_id "intron_retention.247"; transcript_id "intron_retention.247"; gene_name "CUFF.1975"; flanks "9244289-,9244565^"; structure "0,1^2-"; splice_chain ",9244289^9244565-"; psi "0.822500";
chr7	juncbase	jcn_only_AA	73101230	73105246	.	-	.	gene_id "jcn_only_AA.217"; transcript_id "jcn_only_AA.217"; gene_name "CUFF.1975"; flanks "73101230^,73105246^"; structure "1-,2-"; splice_chain "73101329-,73105246-"; psi "0.182956";
chr7	juncbase	jcn_only_AA	73101230	73106926	.	-	.	gene_id "jcn_only_AA.218"; transcript_id "jcn_only_AA.218"; gene_name "CUFF.1975"; flanks "73101230^,73106926^"; structure "1-,2-"; splice_chain "73101329-,73106926-"; psi "0.134774";
chr2	juncbase	jcn_only_AA	204355937	204354809	.	-	.	gene_id "jcn_only_AA.219"; transcript_id "jcn_only_AA.219"; gene_name "CUFF.1975"; flanks "204355937^,204354809^"; structure "1-,2-"; splice_chain "204354812-,204354809-"; psi "0.020900";
chr22	juncbase	cassette	21057410	21057921	.	-	.	gene_id "cassette.208"; transcript_id "cassette.208"; gene_name "CUFF.1975"; flanks "21057410^,21057921-"; structure "0,1-2^"; splice_chain ",21057756-21057812^"; psi "0.563500";
chr4	juncbase	cassette	70512648	70465112	.	-	.	gene_id "cassette.209"; transcript_id "cassette.209"; gene_name "CUFF.1975"; flanks "70512648^,70465112-"; structure "0,1-2^"; splice_chain ",70501540-70501409^"; psi "0.347200";
chr11	juncbase	intron_retention	62365994	62365862	.	-	.	gene_id "intron_retention.248"; transcript_id "intron_retention.248"; gene_name "CUFF.1975"; flanks "62365994-,62365862^"; structure "0,1^2-"; splice_chain ",62365994^62365862-"; psi "0.103200";
chr2	juncbase	jcn_only_AA	1251215	1263142	.	-	.	gene_id "jcn_only_AA.220"; transcript_id "jcn_only_AA.220"; gene_name "CUFF.1975"; flanks "1251215^,1263142^"; structure "1-,2-"; splice_chain "1260177-,1263142-"; psi "0.863300";
chr19	juncbase	intron_retention	50309034	50309129	.	-	.	gene_id "intron_retention.249"; transcript_id "intron_retention.249"; gene_name "CUFF.1975"; flanks "50309034-,50309129^"; structure "0,1^2-"; splice_chain ",50309034^50309129-"; psi "0.033200";
chr1	juncbase	jcn_only_AA	222837490	222838651	.	-	.	gene_id "jcn_only_AA.221"; transcript_id "jcn_only_AA.221"; gene_name "CUFF.1975"; flanks "222837490^,222838651^"; structure "1-,2-"; splice_chain "222838225-,222838651-"; psi "0.767800";
chr16	juncbase	intron_retention	3117614	3117985	.	-	.	gene_id "intron_retention.250"; transcript_id "intron_retention.250"; gene_name "CUFF.1975"; flanks "3117614-,3117985^"; structure "0,1^2-"; splice_chain ",3117614^3117985-"; psi "0.120100";
chr14	juncbase	cassette	24564054	24566101	.	-	.	gene_id "cassette.210"; transcript_id "cassette.210"; gene_name "CUFF.1975"; flanks "24564054^,24566101-"; structure "0,1-2^"; splice_chain ",24564352-24564587^"; psi "0.721300";
chr15	juncbase	intron_retention	97326974	97327383	.	-	.	gene_id "intron_retention.251"; transcript_id "intron_retention.251"; gene_name "CUFF.1975"; flanks "97326974-,97327383^"; structure "0,1^2-"; splice_chain ",97326974^97327383-"; psi "0.612500";
chr14	juncbase	cassette	69619661	69585947	.	-	.	gene_id "cassette.211"; transcript_id "cassette.211"; gene_name "CUFF.1975"; flanks "69619661^,69585947-"; structure "0,1-2^"; splice_chain ",69589077-69588934^"; psi "0.480500";
chr2	juncbase	jcn_only_AD	61753555	61749818	.	-	.	gene_id "jcn_only_AD.253"; transcript_id "jcn_only_AD.253"; gene_name "CUFF.1975"; flanks "61753555-,61749818-"; structure "1^,2^"; splice_chain "61753555^,61752405^"; psi "0.922969";
chr2	juncbase	jcn_only_AD	61753556	61749818	.	-	.	gene_id "jcn_only_AD.254"; transcript_id "jcn_only_AD.254"; gene_name "CUFF.1975"; flanks "61753556-,61749818-"; structure "1^,2^"; splice_chain "61753556^,61752405^"; psi "0.003881";
chr8	juncbase	cassette	80963762	80956443	.	-	.	gene_id "cassette.212"; transcript_id "cassette.212"; gene_name "CUFF.1975"; flanks "80963762^,80956443-"; structure "0,1-2^"; splice_chain ",80962706-80962680^"; psi "0.448500";
chr8	juncbase	cassette	80963762	80954903	.	-	.	gene_id "cassette.213"; transcript_id "cassette.213"; gene_name "CUFF.1975"; flanks "80963762^,80954903-"; structure "0,1-2^"; splice_chain ",80962706-80962680^"; psi "0.448500";
chr8	juncbase	cassette	80963487	80954903	.	-	.	gene_id "cassette.214"; transcript_id "cassette.214"; gene_name "CUFF.1975"; flanks "80963487^,80954903-"; structure "0,1-2^"; splice_chain ",80962706-80962680^"; psi "0.448500";
chr1	juncbase	intron_retention	161953386	161953195	.	-	.	gene_id "intron_retention.252"; transcript_id "intron_retention.252"; gene_name "CUFF.1975"; flanks "161953386-,161953195^"; structure "0,1^2-"; splice_chain ",161953386^161953195-"; psi "0.833300";
chr5	juncbase	jcn_only_AD	127418662	127398192	.	-	.	gene_id "jcn_only_AD.255"; transcript_id "jcn_only_AD.255"; gene_name "CUFF.1975"; flanks "127418662-,127398192-"; structure "1^,2^"; splice_chain "127418662^,127418427^"; psi "0.648400";
chr20	juncbase	intron_retention	2844729	2844825	.	-	.	gene_id "intron_retention.253"; transcript_id "intron_retention.253"; gene_name "CUFF.1975"; flanks "2844729-,2844825^"; structure "0,1^2-"; splice_chain ",2844729^2844825-"; psi "0.590700";
chr11	juncbase	jcn_only_AD	417325	410027	.	-	.	gene_id "jcn_only_AD.256"; transcript_id "jcn_only_AD.256"; gene_name "CUFF.1975"; flanks "417325-,410027-"; structure "1^,2^"; splice_chain "417325^,417294^"; psi "0.230200";
chr7	juncbase	jcn_only_AA	107643294	107642178	.	-	.	gene_id "jcn_only_AA.222"; transcript_id "jcn_only_AA.222"; gene_name "CUFF.1975"; flanks "107643294^,107642178^"; structure "1-,2-"; splice_chain "107642829-,107642178-"; psi "0.590900";
chr16	juncbase	jcn_only_AD	21716613	21721209	.	-	.	gene_id "jcn_only_AD.257"; transcript_id "jcn_only_AD.257"; gene_name "CUFF.1975"; flanks "21716613-,21721209-"; structure "1^,2^"; splice_chain "21716613^,21716765^"; psi "0.877800";
chr12	juncbase	intron_retention	53459486	53459058	.	-	.	gene_id "intron_retention.254"; transcript_id "intron_retention.254"; gene_name "CUFF.1975"; flanks "53459486-,53459058^"; structure "0,1^2-"; splice_chain ",53459486^53459058-"; psi "0.777800";
chr20	juncbase	jcn_only_AA	31123244	31115716	.	-	.	gene_id "jcn_only_AA.223"; transcript_id "jcn_only_AA.223"; gene_name "CUFF.1975"; flanks "31123244^,31115716^"; structure "1-,2-"; splice_chain "31121288-,31115716-"; psi "0.881800";
chr10	juncbase	jcn_only_AD	35437419	35467800	.	-	.	gene_id "jcn_only_AD.258"; transcript_id "jcn_only_AD.258"; gene_name "CUFF.1975"; flanks "35437419-,35467800-"; structure "1^,2^"; splice_chain "35437419^,35464633^"; psi "0.769500";
chr16	juncbase	cassette	4466460	4458252	.	-	.	gene_id "cassette.215"; transcript_id "cassette.215"; gene_name "CUFF.1975"; flanks "4466460^,4458252-"; structure "0,1-2^"; splice_chain ",4462431-4462357^"; psi "0.779200";
chr14	juncbase	cassette	24459568	24473546	.	-	.	gene_id "cassette.216"; transcript_id "cassette.216"; gene_name "CUFF.1975"; flanks "24459568^,24473546-"; structure "0,1-2^"; splice_chain ",24470593-24470726^"; psi "0.972900";
chr10	juncbase	cassette	69583072	69571421	.	-	.	gene_id "cassette.217"; transcript_id "cassette.217"; gene_name "CUFF.1975"; flanks "69583072^,69571421-"; structure "0,1-2^"; splice_chain ",69575891-69575798^"; psi "0.503500";
chr16	juncbase	intron_retention	19592975	19603112	.	-	.	gene_id "intron_retention.255"; transcript_id "intron_retention.255"; gene_name "CUFF.1975"; flanks "19592975-,19603112^"; structure "0,1^2-"; splice_chain ",19592975^19603112-"; psi "0.170600";
chr15	juncbase	intron_retention	83357488	83355771	.	-	.	gene_id "intron_retention.256"; transcript_id "intron_retention.256"; gene_name "CUFF.1975"; flanks "83357488-,83355771^"; structure "0,1^2-"; splice_chain ",83357488^83355771-"; psi "0.913600";
chr14	juncbase	jcn_only_AA	75179636	75165559	.	-	.	gene_id "jcn_only_AA.224"; transcript_id "jcn_only_AA.224"; gene_name "CUFF.1975"; flanks "75179636^,75165559^"; structure "1-,2-"; splice_chain "75168477-,75165559-"; psi "0.538941";
chr14	juncbase	jcn_only_AA	75179636	75159031	.	-	.	gene_id "jcn_only_AA.225"; transcript_id "jcn_only_AA.225"; gene_name "CUFF.1975"; flanks "75179636^,75159031^"; structure "1-,2-"; splice_chain "75168477-,75159031-"; psi "0.872930";
chr14	juncbase	jcn_only_AA	75179636	75152363	.	-	.	gene_id "jcn_only_AA.226"; transcript_id "jcn_only_AA.226"; gene_name "CUFF.1975"; flanks "75179636^,75152363^"; structure "1-,2-"; splice_chain "75168477-,75152363-"; psi "0.394860";
chr1	juncbase	jcn_only_AD	1987001	1987923	.	-	.	gene_id "jcn_only_AD.259"; transcript_id "jcn_only_AD.259"; gene_name "CUFF.1975"; flanks "1987001-,1987923-"; structure "1^,2^"; splice_chain "1987001^,1987315^"; psi "0.822000";
chr16	juncbase	intron_retention	70398548	70398920	.	-	.	gene_id "intron_retention.257"; transcript_id "intron_retention.257"; gene_name "CUFF.1975"; flanks "70398548-,70398920^"; structure "0,1^2-"; splice_chain ",70398548^70398920-"; psi "0.007400";
chr8	juncbase	intron_retention	118541048	118542962	.	-	.	gene_id "intron_retention.258"; transcript_id "intron_retention.258"; gene_name "CUFF.1975"; flanks "118541048-,118542962^"; structure "0,1^2-"; splice_chain ",118541048^118542962-"; psi "0.697700";
chr13	juncbase	jcn_only_AD	21205241	21228015	.	-	.	gene_id "jcn_only_AD.260"; transcript_id "jcn_only_AD.260"; gene_name "CUFF.1975"; flanks "21205241-,21228015-"; structure "1^,2^"; splice_chain "21205241^,21219097^"; psi "0.778700";
chr11	juncbase	jcn_only_AD	407852	407568	.	-	.	gene_id "jcn_only_AD.261"; transcript_id "jcn_only_AD.261"; gene_name "CUFF.1975"; flanks "407852-,407568-"; structure "1^,2^"; splice_chain "407852^,407817^"; psi "0.096700";
chr8	juncbase	intron_retention	23179643	23177565	.	-	.	gene_id "intron_retention.259"; transcript_id "intron_retention.259"; gene_name "CUFF.1975"; flanks "23179643-,23177565^"; structure "0,1^2-"; splice_chain ",23179643^23177565-"; psi "0.184700";
chr17	juncbase	jcn_only_AA	61561902	61562597	.	-	.	gene_id "jcn_only_AA.227"; transcript_id "jcn_only_AA.227"; gene_name "CUFF.1975"; flanks "61561902^,61562597^"; structure "1-,2-"; splice_chain "61562331-,61562597-"; psi "0.646800";
chr2	juncbase	jcn_only_AA	25186274	25180843	.	-	.	gene_id "jcn_only_AA.228"; transcript_id "jcn_only_AA.228"; gene_name "CUFF.1975"; flanks "25186274^,25180843^"; structure "1-,2-"; splice_chain "25181470-,25180843-"; psi "0.821200";
chr16	juncbase	jcn_only_AD	4466460	4463405	.	-	.	gene_id "jcn_only_AD.262"; transcript_id "jcn_only_AD.262"; gene_name "CUFF.1975"; flanks "4466460-,4463405-"; structure "1^,2^"; splice_chain "4466460^,4465716^"; psi "0.614813";
chr16	juncbase	jcn_only_AD	4465767	4463405	.	-	.	gene_id "jcn_only_AD.263"; transcript_id "jcn_only_AD.263"; gene_name "CUFF.1975"; flanks "4465767-,4463405-"; structure "1^,2^"; splice_chain "4465767^,4465716^"; psi "0.057429";
chr16	juncbase	jcn_only_AD	4466786	4463405	.	-	.	gene_id "jcn_only_AD.264"; transcript_id "jcn_only_AD.264"; gene_name "CUFF.1975"; flanks "4466786-,4463405-"; structure "1^,2^"; splice_chain "4466786^,4465716^"; psi "0.034017";
chr19	juncbase	cassette	55084902	55085543	.	-	.	gene_id "cassette.218"; transcript_id "cassette.218"; gene_name "CUFF.1975"; flanks "55084902^,55085543-"; structure "0,1-2^"; splice_chain ",55085165-55085379^"; psi "0.608000";
chr15	juncbase	jcn_only_AD	24793617	24811236	.	-	.	gene_id "jcn_only_AD.265"; transcript_id "jcn_only_AD.265"; gene_name "CUFF.1975"; flanks "24793617-,24811236-"; structure "1^,2^"; splice_chain "24793617^,24803468^"; psi "0.555600";
chr1	juncbase	intron_retention	11083386	11084121	.	-	.	gene_id "intron_retention.260"; transcript_id "intron_retention.260"; gene_name "CUFF.1975"; flanks "11083386-,11084121^"; structure "0,1^2-"; splice_chain ",11083386^11084121-"; psi "0.256900";
chr17	juncbase	jcn_only_AA	1939385	1939823	.	-	.	gene_id "jcn_only_AA.229"; transcript_id "jcn_only_AA.229"; gene_name "CUFF.1975"; flanks "1939385^,1939823^"; structure "1-,2-"; splice_chain "1939723-,1939823-"; psi "0.947200";
chr11	juncbase	intron_retention	61608003	61608096	.	-	.	gene_id "intron_retention.261"; transcript_id "intron_retention.261"; gene_name "CUFF.1975"; flanks "61608003-,61608096^"; structure "0,1^2-"; splice_chain ",61608003^61608096-"; psi "0.091800";
chr2	juncbase	intron_retention	256207	253115	.	-	.	gene_id "intron_retention.262"; transcript_id "intron_retention.262"; gene_name "CUFF.1975"; flanks "256207-,253115^"; structure "0,1^2-"; splice_chain ",256207^253115-"; psi "0.552200";
chr16	juncbase	jcn_only_AA	57513757	57513597	.	-	.	gene_id "jcn_only_AA.230"; transcript_id "jcn_only_AA.230"; gene_name "CUFF.1975"; flanks "57513757^,57513597^"; structure "1-,2-"; splice_chain "57513600-,57513597-"; psi "0.296500";
chr4	juncbase	cassette	1713601	1701797	.	-	.	gene_id "cassette.219"; transcript_id "cassette.219"; gene_name "CUFF.1975"; flanks "1713601^,1701797-"; structure "0,1-2^"; splice_chain ",1705427-1705323^"; psi "0.508800";
chrX	juncbase	jcn_only_AA	47035985	47040614	.	-	.	gene_id "jcn_only_AA.231"; transcript_id "jcn_only_AA.231"; gene_name "CUFF.1975"; flanks "47035985^,47040614^"; structure "1-,2-"; splice_chain "47038502-,47040614-"; psi "0.256400";
chr11	juncbase	intron_retention	118402586	118403005	.	-	.	gene_id "intron_retention.263"; transcript_id "intron_retention.263"; gene_name "CUFF.1975"; flanks "118402586-,118403005^"; structure "0,1^2-"; splice_chain ",118402586^118403005-"; psi "0.844800";
chr11	juncbase	jcn_only_AD	10829721	10828928	.	-	.	gene_id "jcn_only_AD.266"; transcript_id "jcn_only_AD.266"; gene_name "CUFF.1975"; flanks "10829721-,10828928-"; structure "1^,2^"; splice_chain "10829721^,10829081^"; psi "0.381811";
chr11	juncbase	jcn_only_AD	10829292	10828928	.	-	.	gene_id "jcn_only_AD.267"; transcript_id "jcn_only_AD.267"; gene_name "CUFF.1975"; flanks "10829292-,10828928-"; structure "1^,2^"; splice_chain "10829292^,10829081^"; psi "0.322970";
chr11	juncbase	jcn_only_AD	10829096	10828928	.	-	.	gene_id "jcn_only_AD.268"; transcript_id "jcn_only_AD.268"; gene_name "CUFF.1975"; flanks "10829096-,10828928-"; structure "1^,2^"; splice_chain "10829096^,10829081^"; psi "0.081000";
chr11	juncbase	jcn_only_AD	36475656	36483892	.	-	.	gene_id "jcn_only_AD.269"; transcript_id "jcn_only_AD.269"; gene_name "CUFF.1975"; flanks "36475656-,36483892-"; structure "1^,2^"; splice_chain "36475656^,36476996^"; psi "0.518537";
chr11	juncbase	jcn_only_AD	36476368	36483892	.	-	.	gene_id "jcn_only_AD.270"; transcript_id "jcn_only_AD.270"; gene_name "CUFF.1975"; flanks "36476368-,36483892-"; structure "1^,2^"; splice_chain "36476368^,36476996^"; psi "0.587318";
chr11	juncbase	jcn_only_AA	8947010	8941997	.	-	.	gene_id "jcn_only_AA.232"; transcript_id "jcn_only_AA.232"; gene_name "CUFF.1975"; flanks "8947010^,8941997^"; structure "1-,2-"; splice_chain "8943062-,8941997-"; psi "0.508200";
chr6	juncbase	intron_retention	161529891	161529983	.	-	.	gene_id "intron_retention.264"; transcript_id "intron_retention.264"; gene_name "CUFF.1975"; flanks "161529891-,161529983^"; structure "0,1^2-"; splice_chain ",161529891^161529983-"; psi "0.402400";
chr6	juncbase	cassette	28109807	28116094	.	-	.	gene_id "cassette.220"; transcript_id "cassette.220"; gene_name "CUFF.1975"; flanks "28109807^,28116094-"; structure "0,1-2^"; splice_chain ",28112109-28112202^"; psi "0.891600";
chr6	juncbase	intron_retention	31938689	31938529	.	-	.	gene_id "intron_retention.265"; transcript_id "intron_retention.265"; gene_name "CUFF.1975"; flanks "31938689-,31938529^"; structure "0,1^2-"; splice_chain ",31938689^31938529-"; psi "0.363000";
chr22	juncbase	intron_retention	25855482	25915890	.	-	.	gene_id "intron_retention.266"; transcript_id "intron_retention.266"; gene_name "CUFF.1975"; flanks "25855482-,25915890^"; structure "0,1^2-"; splice_chain ",25855482^25915890-"; psi "0.529400";
chr5	juncbase	jcn_only_AD	60214092	60200700	.	-	.	gene_id "jcn_only_AD.271"; transcript_id "jcn_only_AD.271"; gene_name "CUFF.1975"; flanks "60214092-,60200700-"; structure "1^,2^"; splice_chain "60214092^,60203107^"; psi "0.854100";
chr11	juncbase	jcn_only_AD	10821791	10821303	.	-	.	gene_id "jcn_only_AD.272"; transcript_id "jcn_only_AD.272"; gene_name "CUFF.1975"; flanks "10821791-,10821303-"; structure "1^,2^"; splice_chain "10821791^,10821637^"; psi "0.736600";
chr19	juncbase	intron_retention	21639263	21637274	.	-	.	gene_id "intron_retention.267"; transcript_id "intron_retention.267"; gene_name "CUFF.1975"; flanks "21639263-,21637274^"; structure "0,1^2-"; splice_chain ",21639263^21637274-"; psi "0.016500";
chr12	juncbase	jcn_only_AD	1742071	1754960	.	-	.	gene_id "jcn_only_AD.273"; transcript_id "jcn_only_AD.273"; gene_name "CUFF.1975"; flanks "1742071-,1754960-"; structure "1^,2^"; splice_chain "1742071^,1754227^"; psi "0.230957";
chr12	juncbase	jcn_only_AD	1749142	1754960	.	-	.	gene_id "jcn_only_AD.274"; transcript_id "jcn_only_AD.274"; gene_name "CUFF.1975"; flanks "1749142-,1754960-"; structure "1^,2^"; splice_chain "1749142^,1754227^"; psi "0.269611";
chr1	juncbase	intron_retention	54395712	54394113	.	-	.	gene_id "intron_retention.268"; transcript_id "intron_retention.268"; gene_name "CUFF.1975"; flanks "54395712-,54394113^"; structure "0,1^2-"; splice_chain ",54395712^54394113-"; psi "0.235300";
chr19	juncbase	cassette	6110404	6044293	.	-	.	gene_id "cassette.221"; transcript_id "cassette.221"; gene_name "CUFF.1975"; flanks "6110404^,6044293-"; structure "0,1-2^"; splice_chain ",6047515-6047418^"; psi "0.338500";
chr7	juncbase	jcn_only_AA	73107999	73111935	.	-	.	gene_id "jcn_only_AA.233"; transcript_id "jcn_only_AA.233"; gene_name "CUFF.1975"; flanks "73107999^,73111935^"; structure "1-,2-"; splice_chain "73108322-,73111935-"; psi "0.026300";
chr17	juncbase	intron_retention	61904874	61905498	.	-	.	gene_id "intron_retention.269"; transcript_id "intron_retention.269"; gene_name "CUFF.1975"; flanks "61904874-,61905498^"; structure "0,1^2-"; splice_chain ",61904874^61905498-"; psi "0.180400";
chr3	juncbase	jcn_only_AA	126135351	126137301	.	-	.	gene_id "jcn_only_AA.234"; transcript_id "jcn_only_AA.234"; gene_name "CUFF.1975"; flanks "126135351^,126137301^"; structure "1-,2-"; splice_chain "126137298-,126137301-"; psi "0.131856";
chr11	juncbase	jcn_only_AD	828963	829360	.	-	.	gene_id "jcn_only_AD.275"; transcript_id "jcn_only_AD.275"; gene_name "CUFF.1975"; flanks "828963-,829360-"; structure "1^,2^"; splice_chain "828963^,829183^"; psi "0.775100";
chr11	juncbase	jcn_only_AA	2905229	2905140	.	-	.	gene_id "jcn_only_AA.235"; transcript_id "jcn_only_AA.235"; gene_name "CUFF.1975"; flanks "2905229^,2905140^"; structure "1-,2-"; splice_chain "2905145-,2905140-"; psi "0.097700";
chr11	juncbase	intron_retention	10829096	10828928	.	-	.	gene_id "intron_retention.270"; transcript_id "intron_retention.270"; gene_name "CUFF.1975"; flanks "10829096-,10828928^"; structure "0,1^2-"; splice_chain ",10829096^10828928-"; psi "0.993600";
chr14	juncbase	jcn_only_AD	104216131	104212890	.	-	.	gene_id "jcn_only_AD.276"; transcript_id "jcn_only_AD.276"; gene_name "CUFF.1975"; flanks "104216131-,104212890-"; structure "1^,2^"; splice_chain "104216131^,104213270^"; psi "0.772335";
chr18	juncbase	jcn_only_AA	55713020	55833024	.	-	.	gene_id "jcn_only_AA.236"; transcript_id "jcn_only_AA.236"; gene_name "CUFF.1975"; flanks "55713020^,55833024^"; structure "1-,2-"; splice_chain "55833020-,55833024-"; psi "0.752200";
chr9	juncbase	cassette	34989828	34993197	.	-	.	gene_id "cassette.222"; transcript_id "cassette.222"; gene_name "CUFF.1975"; flanks "34989828^,34993197-"; structure "0,1-2^"; splice_chain ",34990345-34990608^"; psi "0.513100";
chr3	juncbase	intron_retention	133921574	133914026	.	-	.	gene_id "intron_retention.271"; transcript_id "intron_retention.271"; gene_name "CUFF.1975"; flanks "133921574-,133914026^"; structure "0,1^2-"; splice_chain ",133921574^133914026-"; psi "0.440000";
chr3	juncbase	intron_retention	125745236	125741775	.	-	.	gene_id "intron_retention.272"; transcript_id "intron_retention.272"; gene_name "CUFF.1975"; flanks "125745236-,125741775^"; structure "0,1^2-"; splice_chain ",125745236^125741775-"; psi "0.817600";
chr1	juncbase	cassette	169454801	169439424	.	-	.	gene_id "cassette.223"; transcript_id "cassette.223"; gene_name "CUFF.1975"; flanks "169454801^,169439424-"; structure "0,1-2^"; splice_chain ",169446995-169446393^"; psi "0.968300";
chr11	juncbase	intron_retention	64000337	64001366	.	-	.	gene_id "intron_retention.273"; transcript_id "intron_retention.273"; gene_name "CUFF.1975"; flanks "64000337-,64001366^"; structure "0,1^2-"; splice_chain ",64000337^64001366-"; psi "0.565300";
chr17	juncbase	jcn_only_AD	75543174	75557027	.	-	.	gene_id "jcn_only_AD.277"; transcript_id "jcn_only_AD.277"; gene_name "CUFF.1975"; flanks "75543174-,75557027-"; structure "1^,2^"; splice_chain "75543174^,75556925^"; psi "0.764700";
chr8	juncbase	jcn_only_AA	71521068	71564048	.	-	.	gene_id "jcn_only_AA.237"; transcript_id "jcn_only_AA.237"; gene_name "CUFF.1975"; flanks "71521068^,71564048^"; structure "1-,2-"; splice_chain "71543340-,71564048-"; psi "0.233600";
chr1	juncbase	jcn_only_AA	31783011	31791956	.	-	.	gene_id "jcn_only_AA.238"; transcript_id "jcn_only_AA.238"; gene_name "CUFF.1975"; flanks "31783011^,31791956^"; structure "1-,2-"; splice_chain "31791014-,31791956-"; psi "0.916400";
chr22	juncbase	intron_retention	51017465	51017088	.	-	.	gene_id "intron_retention.274"; transcript_id "intron_retention.274"; gene_name "CUFF.1975"; flanks "51017465-,51017088^"; structure "0,1^2-"; splice_chain ",51017465^51017088-"; psi "0.866700";
chr3	juncbase	jcn_only_AA	49355742	49349087	.	-	.	gene_id "jcn_only_AA.239"; transcript_id "jcn_only_AA.239"; gene_name "CUFF.1975"; flanks "49355742^,49349087^"; structure "1-,2-"; splice_chain "49354911-,49349087-"; psi "0.888000";
chr15	juncbase	jcn_only_AD	25223465	25225094	.	-	.	gene_id "jcn_only_AD.278"; transcript_id "jcn_only_AD.278"; gene_name "CUFF.1975"; flanks "25223465-,25225094-"; structure "1^,2^"; splice_chain "25223465^,25224789^"; psi "0.348400";
chr3	juncbase	jcn_only_AA	126135351	126137298	.	-	.	gene_id "jcn_only_AA.240"; transcript_id "jcn_only_AA.240"; gene_name "CUFF.1975"; flanks "126135351^,126137298^"; structure "1-,2-"; splice_chain "126135615-,126137298-"; psi "0.910157";
chr3	juncbase	jcn_only_AA	126135351	126137301	.	-	.	gene_id "jcn_only_AA.241"; transcript_id "jcn_only_AA.241"; gene_name "CUFF.1975"; flanks "126135351^,126137301^"; structure "1-,2-"; splice_chain "126135615-,126137301-"; psi "0.606091";
chr19	juncbase	intron_retention	18120503	18120592	.	-	.	gene_id "intron_retention.275"; transcript_id "intron_retention.275"; gene_name "CUFF.1975"; flanks "18120503-,18120592^"; structure "0,1^2-"; splice_chain ",18120503^18120592-"; psi "0.229500";
chr7	juncbase	cassette	148984867	148989302	.	-	.	gene_id "cassette.224"; transcript_id "cassette.224"; gene_name "CUFF.1975"; flanks "148984867^,148989302-"; structure "0,1-2^"; splice_chain ",148987029-148987129^"; psi "0.180900";
chr2	juncbase	intron_retention	263984	253115	.	-	.	gene_id "intron_retention.276"; transcript_id "intron_retention.276"; gene_name "CUFF.1975"; flanks "263984-,253115^"; structure "0,1^2-"; splice_chain ",263984^253115-"; psi "0.154900";
chr7	juncbase	intron_retention	107234550	107236312	.	-	.	gene_id "intron_retention.277"; transcript_id "intron_retention.277"; gene_name "CUFF.1975"; flanks "107234550-,107236312^"; structure "0,1^2-"; splice_chain ",107234550^107236312-"; psi "0.129300";
chr16	juncbase	jcn_only_AD	57513354	57509869	.	-	.	gene_id "jcn_only_AD.279"; transcript_id "jcn_only_AD.279"; gene_name "CUFF.1975"; flanks "57513354-,57509869-"; structure "1^,2^"; splice_chain "57513354^,57512456^"; psi "0.990800";
chr17	juncbase	jcn_only_AD	79994290	79994184	.	-	.	gene_id "jcn_only_AD.280"; transcript_id "jcn_only_AD.280"; gene_name "CUFF.1975"; flanks "79994290-,79994184-"; structure "1^,2^"; splice_chain "79994290^,79994260^"; psi "0.035800";
chr19	juncbase	intron_retention	45261730	45261981	.	-	.	gene_id "intron_retention.278"; transcript_id "intron_retention.278"; gene_name "CUFF.1975"; flanks "45261730-,45261981^"; structure "0,1^2-"; splice_chain ",45261730^45261981-"; psi "0.827300";
chr13	juncbase	jcn_only_AD	101133374	101132617	.	-	.	gene_id "jcn_only_AD.281"; transcript_id "jcn_only_AD.281"; gene_name "CUFF.1975"; flanks "101133374-,101132617-"; structure "1^,2^"; splice_chain "101133374^,101133234^"; psi "0.232800";
chr9	juncbase	jcn_only_AD	123555427	123550556	.	-	.	gene_id "jcn_only_AD.282"; transcript_id "jcn_only_AD.282"; gene_name "CUFF.1975"; flanks "123555427-,123550556-"; structure "1^,2^"; splice_chain "123555427^,123555165^"; psi "0.730800";
chr18	juncbase	jcn_only_AD	77891075	77893495	.	-	.	gene_id "jcn_only_AD.283"; transcript_id "jcn_only_AD.283"; gene_name "CUFF.1975"; flanks "77891075-,77893495-"; structure "1^,2^"; splice_chain "77891075^,77891689^"; psi "0.846500";
chr2	juncbase	cassette	3469466	3482617	.	-	.	gene_id "cassette.225"; transcript_id "cassette.225"; gene_name "CUFF.1975"; flanks "3469466^,3482617-"; structure "0,1-2^"; splice_chain ",3481466-3481566^"; psi "0.769500";
chr5	juncbase	jcn_only_AA	472794	466641	.	-	.	gene_id "jcn_only_AA.242"; transcript_id "jcn_only_AA.242"; gene_name "CUFF.1975"; flanks "472794^,466641^"; structure "1-,2-"; splice_chain "471938-,466641-"; psi "0.988307";
chr17	juncbase	jcn_only_AA	56082284	56081079	.	-	.	gene_id "jcn_only_AA.243"; transcript_id "jcn_only_AA.243"; gene_name "CUFF.1975"; flanks "56082284^,56081079^"; structure "1-,2-"; splice_chain "56081362-,56081079-"; psi "0.311700";
chr20	juncbase	intron_retention	3172411	3171884	.	-	.	gene_id "intron_retention.279"; transcript_id "intron_retention.279"; gene_name "CUFF.1975"; flanks "3172411-,3171884^"; structure "0,1^2-"; splice_chain ",3172411^3171884-"; psi "0.464300";
chr12	juncbase	intron_retention	72094658	72097757	.	-	.	gene_id "intron_retention.280"; transcript_id "intron_retention.280"; gene_name "CUFF.1975"; flanks "72094658-,72097757^"; structure "0,1^2-"; splice_chain ",72094658^72097757-"; psi "0.442400";
chr19	juncbase	intron_retention	52076654	52084644	.	-	.	gene_id "intron_retention.281"; transcript_id "intron_retention.281"; gene_name "CUFF.1975"; flanks "52076654-,52084644^"; structure "0,1^2-"; splice_chain ",52076654^52084644-"; psi "0.171600";
chr11	juncbase	intron_retention	10821637	10821303	.	-	.	gene_id "intron_retention.282"; transcript_id "intron_retention.282"; gene_name "CUFF.1975"; flanks "10821637-,10821303^"; structure "0,1^2-"; splice_chain ",10821637^10821303-"; psi "0.448000";
chr19	juncbase	jcn_only_AD	6199491	6176454	.	-	.	gene_id "jcn_only_AD.284"; transcript_id "jcn_only_AD.284"; gene_name "CUFF.1975"; flanks "6199491-,6176454-"; structure "1^,2^"; splice_chain "6199491^,6199487^"; psi "0.589700";
chrX	juncbase	jcn_only_AA	9130838	9050776	.	-	.	gene_id "jcn_only_AA.244"; transcript_id "jcn_only_AA.244"; gene_name "CUFF.1975"; flanks "9130838^,9050776^"; structure "1-,2-"; splice_chain "9130354-,9050776-"; psi "0.690500";
chr6	juncbase	cassette	90333776	90337302	.	-	.	gene_id "cassette.226"; transcript_id "cassette.226"; gene_name "CUFF.1975"; flanks "90333776^,90337302-"; structure "0,1-2^"; splice_chain ",90334258-90334410^"; psi "0.808000";
chr7	juncbase	jcn_only_AD	38768142	38766588	.	-	.	gene_id "jcn_only_AD.285"; transcript_id "jcn_only_AD.285"; gene_name "CUFF.1975"; flanks "38768142-,38766588-"; structure "1^,2^"; splice_chain "38768142^,38767941^"; psi "0.483400";
chr19	juncbase	jcn_only_AD	52266770	52271898	.	-	.	gene_id "jcn_only_AD.286"; transcript_id "jcn_only_AD.286"; gene_name "CUFF.1975"; flanks "52266770-,52271898-"; structure "1^,2^"; splice_chain "52266770^,52271785^"; psi "0.333180";
chr19	juncbase	jcn_only_AD	52264483	52271898	.	-	.	gene_id "jcn_only_AD.287"; transcript_id "jcn_only_AD.287"; gene_name "CUFF.1975"; flanks "52264483-,52271898-"; structure "1^,2^"; splice_chain "52264483^,52271785^"; psi "0.819801";
chr19	juncbase	jcn_only_AD	52265788	52271898	.	-	.	gene_id "jcn_only_AD.288"; transcript_id "jcn_only_AD.288"; gene_name "CUFF.1975"; flanks "52265788-,52271898-"; structure "1^,2^"; splice_chain "52265788^,52271785^"; psi "0.465065";
chr1	juncbase	cassette	213188955	213181808	.	-	.	gene_id "cassette.227"; transcript_id "cassette.227"; gene_name "CUFF.1975"; flanks "213188955^,213181808-"; structure "0,1-2^"; splice_chain ",213186760-213186435^"; psi "0.478300";
chr11	juncbase	jcn_only_AA	1776136	1775368	.	-	.	gene_id "jcn_only_AA.245"; transcript_id "jcn_only_AA.245"; gene_name "CUFF.1975"; flanks "1776136^,1775368^"; structure "1-,2-"; splice_chain "1775485-,1775368-"; psi "0.798500";
chr19	juncbase	intron_retention	50305398	50305791	.	-	.	gene_id "intron_retention.283"; transcript_id "intron_retention.283"; gene_name "CUFF.1975"; flanks "50305398-,50305791^"; structure "0,1^2-"; splice_chain ",50305398^50305791-"; psi "0.321400";
chr11	juncbase	intron_retention	10823596	10822634	.	-	.	gene_id "intron_retention.284"; transcript_id "intron_retention.284"; gene_name "CUFF.1975"; flanks "10823596-,10822634^"; structure "0,1^2-"; splice_chain ",10823596^10822634-"; psi "0.654300";
chr15	juncbase	jcn_only_AA	40752095	40754114	.	-	.	gene_id "jcn_only_AA.246"; transcript_id "jcn_only_AA.246"; gene_name "CUFF.1975"; flanks "40752095^,40754114^"; structure "1-,2-"; splice_chain "40754111-,40754114-"; psi "0.240000";
chr3	juncbase	intron_retention	28283303	28304782	.	-	.	gene_id "intron_retention.285"; transcript_id "intron_retention.285"; gene_name "CUFF.1975"; flanks "28283303-,28304782^"; structure "0,1^2-"; splice_chain ",28283303^28304782-"; psi "0.355300";
chr14	juncbase	cassette	52495440	52486896	.	-	.	gene_id "cassette.228"; transcript_id "cassette.228"; gene_name "CUFF.1975"; flanks "52495440^,52486896-"; structure "0,1-2^"; splice_chain ",52494062-52493919^"; psi "0.184200";
chr19	juncbase	intron_retention	11470396	11470497	.	-	.	gene_id "intron_retention.286"; transcript_id "intron_retention.286"; gene_name "CUFF.1975"; flanks "11470396-,11470497^"; structure "0,1^2-"; splice_chain ",11470396^11470497-"; psi "0.684200";
chr16	juncbase	intron_retention	89789591	89789668	.	-	.	gene_id "intron_retention.287"; transcript_id "intron_retention.287"; gene_name "CUFF.1975"; flanks "89789591-,89789668^"; structure "0,1^2-"; splice_chain ",89789591^89789668-"; psi "0.028700";
chr10	juncbase	intron_retention	74095538	74094375	.	-	.	gene_id "intron_retention.288"; transcript_id "intron_retention.288"; gene_name "CUFF.1975"; flanks "74095538-,74094375^"; structure "0,1^2-"; splice_chain ",74095538^74094375-"; psi "0.415400";
chr2	juncbase	intron_retention	86850939	86849950	.	-	.	gene_id "intron_retention.289"; transcript_id "intron_retention.289"; gene_name "CUFF.1975"; flanks "86850939-,86849950^"; structure "0,1^2-"; splice_chain ",86850939^86849950-"; psi "0.352900";
chr18	juncbase	intron_retention	56056424	56057878	.	-	.	gene_id "intron_retention.290"; transcript_id "intron_retention.290"; gene_name "CUFF.1975"; flanks "56056424-,56057878^"; structure "0,1^2-"; splice_chain ",56056424^56057878-"; psi "0.054500";
chr5	juncbase	cassette	141035188	141034002	.	-	.	gene_id "cassette.229"; transcript_id "cassette.229"; gene_name "CUFF.1975"; flanks "141035188^,141034002-"; structure "0,1-2^"; splice_chain ",141034967-141034929^"; psi "0.352600";
chr2	juncbase	jcn_only_AD	175740516	175711685	.	-	.	gene_id "jcn_only_AD.289"; transcript_id "jcn_only_AD.289"; gene_name "CUFF.1975"; flanks "175740516-,175711685-"; structure "1^,2^"; splice_chain "175740516^,175712447^"; psi "0.179448";
chr17	juncbase	intron_retention	79225293	79220858	.	-	.	gene_id "intron_retention.291"; transcript_id "intron_retention.291"; gene_name "CUFF.1975"; flanks "79225293-,79220858^"; structure "0,1^2-"; splice_chain ",79225293^79220858-"; psi "0.671000";
chr9	juncbase	intron_retention	131010214	131010862	.	-	.	gene_id "intron_retention.292"; transcript_id "intron_retention.292"; gene_name "CUFF.1975"; flanks "131010214-,131010862^"; structure "0,1^2-"; splice_chain ",131010214^131010862-"; psi "0.167100";
chr8	juncbase	jcn_only_AD	120790259	120774848	.	-	.	gene_id "jcn_only_AD.290"; transcript_id "jcn_only_AD.290"; gene_name "CUFF.1975"; flanks "120790259-,120774848-"; structure "1^,2^"; splice_chain "120790259^,120779243^"; psi "0.116300";
chr19	juncbase	cassette	56320135	56313105	.	-	.	gene_id "cassette.230"; transcript_id "cassette.230"; gene_name "CUFF.1975"; flanks "56320135^,56313105-"; structure "0,1-2^"; splice_chain ",56319380-56319219^"; psi "0.664700";
chr15	juncbase	intron_retention	97326819	97327383	.	-	.	gene_id "intron_retention.293"; transcript_id "intron_retention.293"; gene_name "CUFF.1975"; flanks "97326819-,97327383^"; structure "0,1^2-"; splice_chain ",97326819^97327383-"; psi "0.278700";
chr7	juncbase	jcn_only_AD	111031894	110603621	.	-	.	gene_id "jcn_only_AD.291"; transcript_id "jcn_only_AD.291"; gene_name "CUFF.1975"; flanks "111031894-,110603621-"; structure "1^,2^"; splice_chain "111031894^,111030627^"; psi "0.616361";
chr7	juncbase	jcn_only_AD	111127294	110603621	.	-	.	gene_id "jcn_only_AD.292"; transcript_id "jcn_only_AD.292"; gene_name "CUFF.1975"; flanks "111127294-,110603621-"; structure "1^,2^"; splice_chain "111127294^,111030627^"; psi "0.971539";
chr17	juncbase	jcn_only_AD	61562330	61562597	.	-	.	gene_id "jcn_only_AD.293"; transcript_id "jcn_only_AD.293"; gene_name "CUFF.1975"; flanks "61562330-,61562597-"; structure "1^,2^"; splice_chain "61562330^,61562427^"; psi "0.398818";
chr17	juncbase	jcn_only_AD	61561902	61562597	.	-	.	gene_id "jcn_only_AD.294"; transcript_id "jcn_only_AD.294"; gene_name "CUFF.1975"; flanks "61561902-,61562597-"; structure "1^,2^"; splice_chain "61561902^,61562427^"; psi "0.631802";
chr2	juncbase	jcn_only_AA	109102364	109102967	.	-	.	gene_id "jcn_only_AA.247"; transcript_id "jcn_only_AA.247"; gene_name "CUFF.1975"; flanks "109102364^,109102967^"; structure "1-,2-"; splice_chain "109102891-,109102967-"; psi "0.015200";
chr2	juncbase	jcn_only_AD	171376050	171399416	.	-	.	gene_id "jcn_only_AD.295"; transcript_id "jcn_only_AD.295"; gene_name "CUFF.1975"; flanks "171376050-,171399416-"; structure "1^,2^"; splice_chain "171376050^,171381136^"; psi "0.828100";
chr20	juncbase	jcn_only_AA	31099150	31062545	.	-	.	gene_id "jcn_only_AA.248"; transcript_id "jcn_only_AA.248"; gene_name "CUFF.1975"; flanks "31099150^,31062545^"; structure "1-,2-"; splice_chain "31097743-,31062545-"; psi "0.912652";
chr20	juncbase	jcn_only_AA	31099150	31074604	.	-	.	gene_id "jcn_only_AA.249"; transcript_id "jcn_only_AA.249"; gene_name "CUFF.1975"; flanks "31099150^,31074604^"; structure "1-,2-"; splice_chain "31097743-,31074604-"; psi "0.805589";
chr2	juncbase	jcn_only_AA	4021135	4009393	.	-	.	gene_id "jcn_only_AA.250"; transcript_id "jcn_only_AA.250"; gene_name "CUFF.1975"; flanks "4021135^,4009393^"; structure "1-,2-"; splice_chain "4020664-,4009393-"; psi "0.443984";
chr2	juncbase	jcn_only_AA	4021135	4015878	.	-	.	gene_id "jcn_only_AA.251"; transcript_id "jcn_only_AA.251"; gene_name "CUFF.1975"; flanks "4021135^,4015878^"; structure "1-,2-"; splice_chain "4020664-,4015878-"; psi "0.325716";
chr2	juncbase	jcn_only_AA	4021135	4009484	.	-	.	gene_id "jcn_only_AA.252"; transcript_id "jcn_only_AA.252"; gene_name "CUFF.1975"; flanks "4021135^,4009484^"; structure "1-,2-"; splice_chain "4020664-,4009484-"; psi "0.365998";
chr17	juncbase	cassette	15603482	15604466	.	-	.	gene_id "cassette.231"; transcript_id "cassette.231"; gene_name "CUFF.1975"; flanks "15603482^,15604466-"; structure "0,1-2^"; splice_chain ",15603587-15603680^"; psi "0.758600";
chr8	juncbase	intron_retention	30670302	30657164	.	-	.	gene_id "intron_retention.294"; transcript_id "intron_retention.294"; gene_name "CUFF.1975"; flanks "30670302-,30657164^"; structure "0,1^2-"; splice_chain ",30670302^30657164-"; psi "0.825500";
chr19	juncbase	intron_retention	42734831	42734543	.	-	.	gene_id "intron_retention.295"; transcript_id "intron_retention.295"; gene_name "CUFF.1975"; flanks "42734831-,42734543^"; structure "0,1^2-"; splice_chain ",42734831^42734543-"; psi "0.871800";
chr15	juncbase	jcn_only_AD	83378346	83358205	.	-	.	gene_id "jcn_only_AD.296"; transcript_id "jcn_only_AD.296"; gene_name "CUFF.1975"; flanks "83378346-,83358205-"; structure "1^,2^"; splice_chain "83378346^,83377524^"; psi "0.984279";
chr15	juncbase	jcn_only_AD	57384089	57458600	.	-	.	gene_id "jcn_only_AD.297"; transcript_id "jcn_only_AD.297"; gene_name "CUFF.1975"; flanks "57384089-,57458600-"; structure "1^,2^"; splice_chain "57384089^,57401515^"; psi "0.423479";
chr22	juncbase	intron_retention	51018486	51018231	.	-	.	gene_id "intron_retention.296"; transcript_id "intron_retention.296"; gene_name "CUFF.1975"; flanks "51018486-,51018231^"; structure "0,1^2-"; splice_chain ",51018486^51018231-"; psi "0.368300";
chr2	juncbase	jcn_only_AD	109066145	109067484	.	-	.	gene_id "jcn_only_AD.298"; transcript_id "jcn_only_AD.298"; gene_name "CUFF.1975"; flanks "109066145-,109067484-"; structure "1^,2^"; splice_chain "109066145^,109066450^"; psi "0.436200";
chr3	juncbase	cassette	33450728	33444396	.	-	.	gene_id "cassette.232"; transcript_id "cassette.232"; gene_name "CUFF.1975"; flanks "33450728^,33444396-"; structure "0,1-2^"; splice_chain ",33450289-33450182^"; psi "0.587800";
chr15	juncbase	cassette	64444049	64444837	.	-	.	gene_id "cassette.233"; transcript_id "cassette.233"; gene_name "CUFF.1975"; flanks "64444049^,64444837-"; structure "0,1-2^"; splice_chain ",64444442-64444525^"; psi "0.875000";
chr11	juncbase	intron_retention	556492	556375	.	-	.	gene_id "intron_retention.297"; transcript_id "intron_retention.297"; gene_name "CUFF.1975"; flanks "556492-,556375^"; structure "0,1^2-"; splice_chain ",556492^556375-"; psi "0.823500";
chr11	juncbase	cassette	77899619	77885629	.	-	.	gene_id "cassette.234"; transcript_id "cassette.234"; gene_name "CUFF.1975"; flanks "77899619^,77885629-"; structure "0,1-2^"; splice_chain ",77897862-77897727^"; psi "0.932600";
chr11	juncbase	jcn_only_AA	119291579	119291088	.	-	.	gene_id "jcn_only_AA.253"; transcript_id "jcn_only_AA.253"; gene_name "CUFF.1975"; flanks "119291579^,119291088^"; structure "1-,2-"; splice_chain "119291096-,119291088-"; psi "0.015474";
chr11	juncbase	jcn_only_AA	119291579	119291045	.	-	.	gene_id "jcn_only_AA.254"; transcript_id "jcn_only_AA.254"; gene_name "CUFF.1975"; flanks "119291579^,119291045^"; structure "1-,2-"; splice_chain "119291096-,119291045-"; psi "0.014934";
chr12	juncbase	jcn_only_AA	49351093	49332630	.	-	.	gene_id "jcn_only_AA.255"; transcript_id "jcn_only_AA.255"; gene_name "CUFF.1975"; flanks "49351093^,49332630^"; structure "1-,2-"; splice_chain "49335360-,49332630-"; psi "0.646817";
chr22	juncbase	intron_retention	45148507	45182337	.	-	.	gene_id "intron_retention.298"; transcript_id "intron_retention.298"; gene_name "CUFF.1975"; flanks "45148507-,45182337^"; structure "0,1^2-"; splice_chain ",45148507^45182337-"; psi "0.017300";
chr5	juncbase	cassette	139886562	139889222	.	-	.	gene_id "cassette.235"; transcript_id "cassette.235"; gene_name "CUFF.1975"; flanks "139886562^,139889222-"; structure "0,1-2^"; splice_chain ",139887370-139887583^"; psi "0.750000";
chr16	juncbase	intron_retention	23505624	23504842	.	-	.	gene_id "intron_retention.299"; transcript_id "intron_retention.299"; gene_name "CUFF.1975"; flanks "23505624-,23504842^"; structure "0,1^2-"; splice_chain ",23505624^23504842-"; psi "0.743800";
chr6	juncbase	cassette	133055392	133047977	.	-	.	gene_id "cassette.236"; transcript_id "cassette.236"; gene_name "CUFF.1975"; flanks "133055392^,133047977-"; structure "0,1-2^"; splice_chain ",133050118-133049880^"; psi "0.655900";
chr6	juncbase	cassette	133055392	133046118	.	-	.	gene_id "cassette.237"; transcript_id "cassette.237"; gene_name "CUFF.1975"; flanks "133055392^,133046118-"; structure "0,1-2^"; splice_chain ",133050118-133049880^"; psi "0.655900";
chr6	juncbase	cassette	133055392	133048151	.	-	.	gene_id "cassette.238"; transcript_id "cassette.238"; gene_name "CUFF.1975"; flanks "133055392^,133048151-"; structure "0,1-2^"; splice_chain ",133050118-133049880^"; psi "0.655900";
chr2	juncbase	jcn_only_AA	191362445	191364741	.	-	.	gene_id "jcn_only_AA.256"; transcript_id "jcn_only_AA.256"; gene_name "CUFF.1975"; flanks "191362445^,191364741^"; structure "1-,2-"; splice_chain "191364558-,191364741-"; psi "0.990900";
chr1	juncbase	jcn_only_AD	32560572	32566043	.	-	.	gene_id "jcn_only_AD.299"; transcript_id "jcn_only_AD.299"; gene_name "CUFF.1975"; flanks "32560572-,32566043-"; structure "1^,2^"; splice_chain "32560572^,32561363^"; psi "0.957600";
chr4	juncbase	jcn_only_AA	1126228	1126515	.	-	.	gene_id "jcn_only_AA.257"; transcript_id "jcn_only_AA.257"; gene_name "CUFF.1975"; flanks "1126228^,1126515^"; structure "1-,2-"; splice_chain "1126497-,1126515-"; psi "0.228600";
chr11	juncbase	jcn_only_AD	2192927	2192000	.	-	.	gene_id "jcn_only_AD.300"; transcript_id "jcn_only_AD.300"; gene_name "CUFF.1975"; flanks "2192927-,2192000-"; structure "1^,2^"; splice_chain "2192927^,2192915^"; psi "0.700000";
chr5	juncbase	jcn_only_AA	54456224	54456880	.	-	.	gene_id "jcn_only_AA.258"; transcript_id "jcn_only_AA.258"; gene_name "CUFF.1975"; flanks "54456224^,54456880^"; structure "1-,2-"; splice_chain "54456822-,54456880-"; psi "0.623400";
chr7	juncbase	jcn_only_AD	86554844	86548626	.	-	.	gene_id "jcn_only_AD.301"; transcript_id "jcn_only_AD.301"; gene_name "CUFF.1975"; flanks "86554844-,86548626-"; structure "1^,2^"; splice_chain "86554844^,86549024^"; psi "0.642848";
chr7	juncbase	jcn_only_AD	86550079	86548626	.	-	.	gene_id "jcn_only_AD.302"; transcript_id "jcn_only_AD.302"; gene_name "CUFF.1975"; flanks "86550079-,86548626-"; structure "1^,2^"; splice_chain "86550079^,86549024^"; psi "0.433993";
chr3	juncbase	jcn_only_AD	125032152	125007072	.	-	.	gene_id "jcn_only_AD.303"; transcript_id "jcn_only_AD.303"; gene_name "CUFF.1975"; flanks "125032152-,125007072-"; structure "1^,2^"; splice_chain "125032152^,125011309^"; psi "0.644900";
chr17	juncbase	cassette	5424844	5421207	.	-	.	gene_id "cassette.239"; transcript_id "cassette.239"; gene_name "CUFF.1975"; flanks "5424844^,5421207-"; structure "0,1-2^"; splice_chain ",5424332-5424201^"; psi "0.424500";
chr16	juncbase	intron_retention	57513773	57513600	.	-	.	gene_id "intron_retention.300"; transcript_id "intron_retention.300"; gene_name "CUFF.1975"; flanks "57513773-,57513600^"; structure "0,1^2-"; splice_chain ",57513773^57513600-"; psi "0.209600";
chr1	juncbase	jcn_only_AA	110212193	110213936	.	-	.	gene_id "jcn_only_AA.259"; transcript_id "jcn_only_AA.259"; gene_name "CUFF.1975"; flanks "110212193^,110213936^"; structure "1-,2-"; splice_chain "110213909-,110213936-"; psi "0.103800";
chr17	juncbase	jcn_only_AA	15499828	15498140	.	-	.	gene_id "jcn_only_AA.260"; transcript_id "jcn_only_AA.260"; gene_name "CUFF.1975"; flanks "15499828^,15498140^"; structure "1-,2-"; splice_chain "15498204-,15498140-"; psi "0.426600";
chr6	juncbase	jcn_only_AD	126307768	126314903	.	-	.	gene_id "jcn_only_AD.304"; transcript_id "jcn_only_AD.304"; gene_name "CUFF.1975"; flanks "126307768-,126314903-"; structure "1^,2^"; splice_chain "126307768^,126307836^"; psi "0.709545";
chr12	juncbase	jcn_only_AA	56708635	56705179	.	-	.	gene_id "jcn_only_AA.261"; transcript_id "jcn_only_AA.261"; gene_name "CUFF.1975"; flanks "56708635^,56705179^"; structure "1-,2-"; splice_chain "56706669-,56705179-"; psi "0.272170";
chr12	juncbase	jcn_only_AA	56708635	56705237	.	-	.	gene_id "jcn_only_AA.262"; transcript_id "jcn_only_AA.262"; gene_name "CUFF.1975"; flanks "56708635^,56705237^"; structure "1-,2-"; splice_chain "56706669-,56705237-"; psi "0.566831";
chr12	juncbase	jcn_only_AA	56708635	56705198	.	-	.	gene_id "jcn_only_AA.263"; transcript_id "jcn_only_AA.263"; gene_name "CUFF.1975"; flanks "56708635^,56705198^"; structure "1-,2-"; splice_chain "56706669-,56705198-"; psi "0.693813";
chr3	juncbase	jcn_only_AA	33612219	33602463	.	-	.	gene_id "jcn_only_AA.264"; transcript_id "jcn_only_AA.264"; gene_name "CUFF.1975"; flanks "33612219^,33602463^"; structure "1-,2-"; splice_chain "33605458-,33602463-"; psi "0.878800";
chr15	juncbase	cassette	78526713	78487068	.	-	.	gene_id "cassette.240"; transcript_id "cassette.240"; gene_name "CUFF.1975"; flanks "78526713^,78487068-"; structure "0,1-2^"; splice_chain ",78500444-78500344^"; psi "0.802000";
chr19	juncbase	jcn_only_AD	45261670	45261981	.	-	.	gene_id "jcn_only_AD.305"; transcript_id "jcn_only_AD.305"; gene_name "CUFF.1975"; flanks "45261670-,45261981-"; structure "1^,2^"; splice_chain "45261670^,45261730^"; psi "0.826100";
chr17	juncbase	intron_retention	25972375	25972887	.	-	.	gene_id "intron_retention.301"; transcript_id "intron_retention.301"; gene_name "CUFF.1975"; flanks "25972375-,25972887^"; structure "0,1^2-"; splice_chain ",25972375^25972887-"; psi "0.021500";
chr9	juncbase	jcn_only_AD	139795128	139802522	.	-	.	gene_id "jcn_only_AD.306"; transcript_id "jcn_only_AD.306"; gene_name "CUFF.1975"; flanks "139795128-,139802522-"; structure "1^,2^"; splice_chain "139795128^,139796848^"; psi "0.374564";
chr9	juncbase	jcn_only_AD	139794972	139802522	.	-	.	gene_id "jcn_only_AD.307"; transcript_id "jcn_only_AD.307"; gene_name "CUFF.1975"; flanks "139794972-,139802522-"; structure "1^,2^"; splice_chain "139794972^,139796848^"; psi "0.963311";
chr4	juncbase	cassette	77192921	77230297	.	-	.	gene_id "cassette.241"; transcript_id "cassette.241"; gene_name "CUFF.1975"; flanks "77192921^,77230297-"; structure "0,1-2^"; splice_chain ",77211055-77211213^"; psi "0.126100";
chr16	juncbase	intron_retention	21973837	21974082	.	-	.	gene_id "intron_retention.302"; transcript_id "intron_retention.302"; gene_name "CUFF.1975"; flanks "21973837-,21974082^"; structure "0,1^2-"; splice_chain ",21973837^21974082-"; psi "0.046300";
chr9	juncbase	jcn_only_AA	116795008	116798580	.	-	.	gene_id "jcn_only_AA.265"; transcript_id "jcn_only_AA.265"; gene_name "CUFF.1975"; flanks "116795008^,116798580^"; structure "1-,2-"; splice_chain "116797471-,116798580-"; psi "0.500000";
chr9	juncbase	jcn_only_AD	86498728	86485547	.	-	.	gene_id "jcn_only_AD.308"; transcript_id "jcn_only_AD.308"; gene_name "CUFF.1975"; flanks "86498728-,86485547-"; structure "1^,2^"; splice_chain "86498728^,86495212^"; psi "0.500000";
chr4	juncbase	jcn_only_AD	120381975	120382872	.	-	.	gene_id "jcn_only_AD.309"; transcript_id "jcn_only_AD.309"; gene_name "CUFF.1975"; flanks "120381975-,120382872-"; structure "1^,2^"; splice_chain "120381975^,120381982^"; psi "0.119700";
chr4	juncbase	intron_retention	83821230	83816000	.	-	.	gene_id "intron_retention.303"; transcript_id "intron_retention.303"; gene_name "CUFF.1975"; flanks "83821230-,83816000^"; structure "0,1^2-"; splice_chain ",83821230^83816000-"; psi "0.506700";
chr17	juncbase	jcn_only_AD	15586350	15584267	.	-	.	gene_id "jcn_only_AD.310"; transcript_id "jcn_only_AD.310"; gene_name "CUFF.1975"; flanks "15586350-,15584267-"; structure "1^,2^"; splice_chain "15586350^,15586175^"; psi "0.853115";
chr2	juncbase	jcn_only_AA	242440893	242440262	.	-	.	gene_id "jcn_only_AA.266"; transcript_id "jcn_only_AA.266"; gene_name "CUFF.1975"; flanks "242440893^,242440262^"; structure "1-,2-"; splice_chain "242440334-,242440262-"; psi "0.913145";
chr6	juncbase	jcn_only_AD	75993936	75977464	.	-	.	gene_id "jcn_only_AD.311"; transcript_id "jcn_only_AD.311"; gene_name "CUFF.1975"; flanks "75993936-,75977464-"; structure "1^,2^"; splice_chain "75993936^,75982180^"; psi "0.937500";
chr12	juncbase	jcn_only_AD	52404925	52407471	.	-	.	gene_id "jcn_only_AD.312"; transcript_id "jcn_only_AD.312"; gene_name "CUFF.1975"; flanks "52404925-,52407471-"; structure "1^,2^"; splice_chain "52404925^,52404991^"; psi "0.550600";
chr7	juncbase	jcn_only_AD	44247797	44250622	.	-	.	gene_id "jcn_only_AD.313"; transcript_id "jcn_only_AD.313"; gene_name "CUFF.1975"; flanks "44247797-,44250622-"; structure "1^,2^"; splice_chain "44247797^,44250530^"; psi "0.849800";
chr2	juncbase	jcn_only_AD	175243651	175216453	.	-	.	gene_id "jcn_only_AD.314"; transcript_id "jcn_only_AD.314"; gene_name "CUFF.1975"; flanks "175243651-,175216453-"; structure "1^,2^"; splice_chain "175243651^,175234715^"; psi "0.423100";
chr17	juncbase	intron_retention	1945169	1945899	.	-	.	gene_id "intron_retention.304"; transcript_id "intron_retention.304"; gene_name "CUFF.1975"; flanks "1945169-,1945899^"; structure "0,1^2-"; splice_chain ",1945169^1945899-"; psi "0.061500";
chr1	juncbase	cassette	11074022	11078790	.	-	.	gene_id "cassette.242"; transcript_id "cassette.242"; gene_name "CUFF.1975"; flanks "11074022^,11078790-"; structure "0,1-2^"; splice_chain ",11076901-11077064^"; psi "0.969800";
chr18	juncbase	cassette	158714	163308	.	-	.	gene_id "cassette.243"; transcript_id "cassette.243"; gene_name "CUFF.1975"; flanks "158714^,163308-"; structure "0,1-2^"; splice_chain ",162983-163174^"; psi "0.495400";
chr17	juncbase	intron_retention	61574346	61574498	.	-	.	gene_id "intron_retention.305"; transcript_id "intron_retention.305"; gene_name "CUFF.1975"; flanks "61574346-,61574498^"; structure "0,1^2-"; splice_chain ",61574346^61574498-"; psi "0.045800";
chr2	juncbase	intron_retention	4007506	4007364	.	-	.	gene_id "intron_retention.306"; transcript_id "intron_retention.306"; gene_name "CUFF.1975"; flanks "4007506-,4007364^"; structure "0,1^2-"; splice_chain ",4007506^4007364-"; psi "0.312100";
chr6	juncbase	jcn_only_AD	126342411	126359851	.	-	.	gene_id "jcn_only_AD.315"; transcript_id "jcn_only_AD.315"; gene_name "CUFF.1975"; flanks "126342411-,126359851-"; structure "1^,2^"; splice_chain "126342411^,126342426^"; psi "0.472200";
chr1	juncbase	intron_retention	153924494	153924142	.	-	.	gene_id "intron_retention.307"; transcript_id "intron_retention.307"; gene_name "CUFF.1975"; flanks "153924494-,153924142^"; structure "0,1^2-"; splice_chain ",153924494^153924142-"; psi "0.182400";
chr10	juncbase	cassette	6266176	6274858	.	-	.	gene_id "cassette.244"; transcript_id "cassette.244"; gene_name "CUFF.1975"; flanks "6266176^,6274858-"; structure "0,1-2^"; splice_chain ",6268155-6268328^"; psi "0.836200";
chr8	juncbase	cassette	107726213	107751686	.	-	.	gene_id "cassette.245"; transcript_id "cassette.245"; gene_name "CUFF.1975"; flanks "107726213^,107751686-"; structure "0,1-2^"; splice_chain ",107749748-107749828^"; psi "0.568000";
chr8	juncbase	cassette	107738537	107751686	.	-	.	gene_id "cassette.246"; transcript_id "cassette.246"; gene_name "CUFF.1975"; flanks "107738537^,107751686-"; structure "0,1-2^"; splice_chain ",107749748-107749828^"; psi "0.568000";
chr8	juncbase	jcn_only_AD	107371864	107531171	.	-	.	gene_id "jcn_only_AD.316"; transcript_id "jcn_only_AD.316"; gene_name "CUFF.1975"; flanks "107371864-,107531171-"; structure "1^,2^"; splice_chain "107371864^,107460276^"; psi "0.750000";
chr17	juncbase	jcn_only_AA	15586168	15584267	.	-	.	gene_id "jcn_only_AA.267"; transcript_id "jcn_only_AA.267"; gene_name "CUFF.1975"; flanks "15586168^,15584267^"; structure "1-,2-"; splice_chain "15584536-,15584267-"; psi "0.942000";
chr9	juncbase	jcn_only_AA	123555427	123550464	.	-	.	gene_id "jcn_only_AA.268"; transcript_id "jcn_only_AA.268"; gene_name "CUFF.1975"; flanks "123555427^,123550464^"; structure "1-,2-"; splice_chain "123550556-,123550464-"; psi "0.075700";
chr22	juncbase	jcn_only_AD	21832079	21830449	.	-	.	gene_id "jcn_only_AD.317"; transcript_id "jcn_only_AD.317"; gene_name "CUFF.1975"; flanks "21832079-,21830449-"; structure "1^,2^"; splice_chain "21832079^,21830933^"; psi "0.105800";
chr15	juncbase	jcn_only_AA	24820150	24832714	.	-	.	gene_id "jcn_only_AA.269"; transcript_id "jcn_only_AA.269"; gene_name "CUFF.1975"; flanks "24820150^,24832714^"; structure "1-,2-"; splice_chain "24825374-,24832714-"; psi "0.739100";
chr15	juncbase	cassette	102201915	102197239	.	-	.	gene_id "cassette.247"; transcript_id "cassette.247"; gene_name "CUFF.1975"; flanks "102201915^,102197239-"; structure "0,1-2^"; splice_chain ",102198060-102197988^"; psi "0.250000";
chr2	juncbase	jcn_only_AD	110922265	110920712	.	-	.	gene_id "jcn_only_AD.318"; transcript_id "jcn_only_AD.318"; gene_name "CUFF.1975"; flanks "110922265-,110920712-"; structure "1^,2^"; splice_chain "110922265^,110922097^"; psi "0.846200";
chr16	juncbase	intron_retention	30006862	30006164	.	-	.	gene_id "intron_retention.308"; transcript_id "intron_retention.308"; gene_name "CUFF.1975"; flanks "30006862-,30006164^"; structure "0,1^2-"; splice_chain ",30006862^30006164-"; psi "0.267900";
chr17	juncbase	intron_retention	1939385	1939723	.	-	.	gene_id "intron_retention.309"; transcript_id "intron_retention.309"; gene_name "CUFF.1975"; flanks "1939385-,1939723^"; structure "0,1^2-"; splice_chain ",1939385^1939723-"; psi "0.746000";
chr16	juncbase	jcn_only_AA	14020613	14021979	.	-	.	gene_id "jcn_only_AA.270"; transcript_id "jcn_only_AA.270"; gene_name "CUFF.1975"; flanks "14020613^,14021979^"; structure "1-,2-"; splice_chain "14021885-,14021979-"; psi "0.182800";
chr4	juncbase	intron_retention	6383504	6382821	.	-	.	gene_id "intron_retention.310"; transcript_id "intron_retention.310"; gene_name "CUFF.1975"; flanks "6383504-,6382821^"; structure "0,1^2-"; splice_chain ",6383504^6382821-"; psi "0.415300";
chr3	juncbase	jcn_only_AD	73610602	73453546	.	-	.	gene_id "jcn_only_AD.319"; transcript_id "jcn_only_AD.319"; gene_name "CUFF.1975"; flanks "73610602-,73453546-"; structure "1^,2^"; splice_chain "73610602^,73605851^"; psi "0.203512";
chr3	juncbase	jcn_only_AD	73651505	73453546	.	-	.	gene_id "jcn_only_AD.320"; transcript_id "jcn_only_AD.320"; gene_name "CUFF.1975"; flanks "73651505-,73453546-"; structure "1^,2^"; splice_chain "73651505^,73605851^"; psi "0.096014";
chr3	juncbase	jcn_only_AD	73618302	73453546	.	-	.	gene_id "jcn_only_AD.321"; transcript_id "jcn_only_AD.321"; gene_name "CUFF.1975"; flanks "73618302-,73453546-"; structure "1^,2^"; splice_chain "73618302^,73605851^"; psi "0.355713";
chr2	juncbase	intron_retention	219222457	219222760	.	-	.	gene_id "intron_retention.311"; transcript_id "intron_retention.311"; gene_name "CUFF.1975"; flanks "219222457-,219222760^"; structure "0,1^2-"; splice_chain ",219222457^219222760-"; psi "0.202100";
chr9	juncbase	jcn_only_AA	125617463	125616860	.	-	.	gene_id "jcn_only_AA.271"; transcript_id "jcn_only_AA.271"; gene_name "CUFF.1975"; flanks "125617463^,125616860^"; structure "1-,2-"; splice_chain "125616894-,125616860-"; psi "0.254200";
chr3	juncbase	jcn_only_AD	107596749	107595033	.	-	.	gene_id "jcn_only_AD.322"; transcript_id "jcn_only_AD.322"; gene_name "CUFF.1975"; flanks "107596749-,107595033-"; structure "1^,2^"; splice_chain "107596749^,107595282^"; psi "0.876540";
chr3	juncbase	jcn_only_AD	107595302	107595033	.	-	.	gene_id "jcn_only_AD.323"; transcript_id "jcn_only_AD.323"; gene_name "CUFF.1975"; flanks "107595302-,107595033-"; structure "1^,2^"; splice_chain "107595302^,107595282^"; psi "0.272593";
chr3	juncbase	jcn_only_AD	107596160	107595033	.	-	.	gene_id "jcn_only_AD.324"; transcript_id "jcn_only_AD.324"; gene_name "CUFF.1975"; flanks "107596160-,107595033-"; structure "1^,2^"; splice_chain "107596160^,107595282^"; psi "0.627748";
chr2	juncbase	jcn_only_AA	73285657	73268790	.	-	.	gene_id "jcn_only_AA.272"; transcript_id "jcn_only_AA.272"; gene_name "CUFF.1975"; flanks "73285657^,73268790^"; structure "1-,2-"; splice_chain "73269714-,73268790-"; psi "0.599768";
chr2	juncbase	jcn_only_AA	73285657	73268060	.	-	.	gene_id "jcn_only_AA.273"; transcript_id "jcn_only_AA.273"; gene_name "CUFF.1975"; flanks "73285657^,73268060^"; structure "1-,2-"; splice_chain "73269714-,73268060-"; psi "0.954990";
chr1	juncbase	jcn_only_AA	245180628	245222688	.	-	.	gene_id "jcn_only_AA.274"; transcript_id "jcn_only_AA.274"; gene_name "CUFF.1975"; flanks "245180628^,245222688^"; structure "1-,2-"; splice_chain "245193957-,245222688-"; psi "0.652800";
chr1	juncbase	cassette	213178375	213173725	.	-	.	gene_id "cassette.248"; transcript_id "cassette.248"; gene_name "CUFF.1975"; flanks "213178375^,213173725-"; structure "0,1-2^"; splice_chain ",213174254-213174128^"; psi "0.608700";
chr19	juncbase	intron_retention	50305856	50306206	.	-	.	gene_id "intron_retention.312"; transcript_id "intron_retention.312"; gene_name "CUFF.1975"; flanks "50305856-,50306206^"; structure "0,1^2-"; splice_chain ",50305856^50306206-"; psi "0.094300";
chr11	juncbase	intron_retention	36397708	36398179	.	-	.	gene_id "intron_retention.313"; transcript_id "intron_retention.313"; gene_name "CUFF.1975"; flanks "36397708-,36398179^"; structure "0,1^2-"; splice_chain ",36397708^36398179-"; psi "0.850400";
chr10	juncbase	cassette	6263490	6264818	.	-	.	gene_id "cassette.249"; transcript_id "cassette.249"; gene_name "CUFF.1975"; flanks "6263490^,6264818-"; structure "0,1-2^"; splice_chain ",6263604-6263708^"; psi "0.955300";
chr17	juncbase	cassette	37596876	37595446	.	-	.	gene_id "cassette.250"; transcript_id "cassette.250"; gene_name "CUFF.1975"; flanks "37596876^,37595446-"; structure "0,1-2^"; splice_chain ",37596771-37596639^"; psi "0.900000";
chr3	juncbase	jcn_only_AD	19992553	20017093	.	-	.	gene_id "jcn_only_AD.325"; transcript_id "jcn_only_AD.325"; gene_name "CUFF.1975"; flanks "19992553-,20017093-"; structure "1^,2^"; splice_chain "19992553^,20012209^"; psi "0.728500";
chr14	juncbase	jcn_only_AD	92958584	92959820	.	-	.	gene_id "jcn_only_AD.326"; transcript_id "jcn_only_AD.326"; gene_name "CUFF.1975"; flanks "92958584-,92959820-"; structure "1^,2^"; splice_chain "92958584^,92959268^"; psi "0.940900";
chr12	juncbase	jcn_only_AA	56708635	56705179	.	-	.	gene_id "jcn_only_AA.275"; transcript_id "jcn_only_AA.275"; gene_name "CUFF.1975"; flanks "56708635^,56705179^"; structure "1-,2-"; splice_chain "56705237-,56705179-"; psi "0.222255";
chr12	juncbase	jcn_only_AA	56708635	56705198	.	-	.	gene_id "jcn_only_AA.276"; transcript_id "jcn_only_AA.276"; gene_name "CUFF.1975"; flanks "56708635^,56705198^"; structure "1-,2-"; splice_chain "56705237-,56705198-"; psi "0.633920";
chr2	juncbase	jcn_only_AD	191362445	191364741	.	-	.	gene_id "jcn_only_AD.327"; transcript_id "jcn_only_AD.327"; gene_name "CUFF.1975"; flanks "191362445-,191364741-"; structure "1^,2^"; splice_chain "191362445^,191364582^"; psi "0.991900";
chr2	juncbase	jcn_only_AD	3405664	3425652	.	-	.	gene_id "jcn_only_AD.328"; transcript_id "jcn_only_AD.328"; gene_name "CUFF.1975"; flanks "3405664-,3425652-"; structure "1^,2^"; splice_chain "3405664^,3425557^"; psi "0.568100";
chr3	juncbase	jcn_only_AA	133901846	133894883	.	-	.	gene_id "jcn_only_AA.277"; transcript_id "jcn_only_AA.277"; gene_name "CUFF.1975"; flanks "133901846^,133894883^"; structure "1-,2-"; splice_chain "133896917-,133894883-"; psi "0.682700";
chr9	juncbase	jcn_only_AA	15267912	15226010	.	-	.	gene_id "jcn_only_AA.278"; transcript_id "jcn_only_AA.278"; gene_name "CUFF.1975"; flanks "15267912^,15226010^"; structure "1-,2-"; splice_chain "15250008-,15226010-"; psi "0.927414";
chr9	juncbase	jcn_only_AA	15267912	15211395	.	-	.	gene_id "jcn_only_AA.279"; transcript_id "jcn_only_AA.279"; gene_name "CUFF.1975"; flanks "15267912^,15211395^"; structure "1-,2-"; splice_chain "15250008-,15211395-"; psi "0.257862";
chr22	juncbase	cassette	18095578	18082861	.	-	.	gene_id "cassette.251"; transcript_id "cassette.251"; gene_name "CUFF.1975"; flanks "18095578^,18082861-"; structure "0,1-2^"; splice_chain ",18083947-18083858^"; psi "0.803500";
chr11	juncbase	intron_retention	124757254	124757109	.	-	.	gene_id "intron_retention.314"; transcript_id "intron_retention.314"; gene_name "CUFF.1975"; flanks "124757254-,124757109^"; structure "0,1^2-"; splice_chain ",124757254^124757109-"; psi "0.114000";
chr4	juncbase	jcn_only_AD	6565287	6537104	.	-	.	gene_id "jcn_only_AD.329"; transcript_id "jcn_only_AD.329"; gene_name "CUFF.1975"; flanks "6565287-,6537104-"; structure "1^,2^"; splice_chain "6565287^,6557261^"; psi "0.888900";
chr3	juncbase	jcn_only_AA	125042232	124996653	.	-	.	gene_id "jcn_only_AA.280"; transcript_id "jcn_only_AA.280"; gene_name "CUFF.1975"; flanks "125042232^,124996653^"; structure "1-,2-"; splice_chain "125032500-,124996653-"; psi "0.924400";
chr6	juncbase	jcn_only_AD	128316607	128313854	.	-	.	gene_id "jcn_only_AD.330"; transcript_id "jcn_only_AD.330"; gene_name "CUFF.1975"; flanks "128316607-,128313854-"; structure "1^,2^"; splice_chain "128316607^,128316394^"; psi "0.345118";
chr6	juncbase	jcn_only_AD	128316592	128313854	.	-	.	gene_id "jcn_only_AD.331"; transcript_id "jcn_only_AD.331"; gene_name "CUFF.1975"; flanks "128316592-,128313854-"; structure "1^,2^"; splice_chain "128316592^,128316394^"; psi "0.057044";
chr6	juncbase	cassette	39864973	39856831	.	-	.	gene_id "cassette.252"; transcript_id "cassette.252"; gene_name "CUFF.1975"; flanks "39864973^,39856831-"; structure "0,1-2^"; splice_chain ",39859155-39859082^"; psi "0.746700";
chr10	juncbase	cassette	6270181	6274858	.	-	.	gene_id "cassette.253"; transcript_id "cassette.253"; gene_name "CUFF.1975"; flanks "6270181^,6274858-"; structure "0,1-2^"; splice_chain ",6273226-6273277^"; psi "0.838800";
chr19	juncbase	cassette	41945379	41939578	.	-	.	gene_id "cassette.254"; transcript_id "cassette.254"; gene_name "CUFF.1975"; flanks "41945379^,41939578-"; structure "0,1-2^"; splice_chain ",41944319-41944123^"; psi "0.650200";
chr14	juncbase	jcn_only_AD	76368567	76420767	.	-	.	gene_id "jcn_only_AD.332"; transcript_id "jcn_only_AD.332"; gene_name "CUFF.1975"; flanks "76368567-,76420767-"; structure "1^,2^"; splice_chain "76368567^,76407837^"; psi "0.245826";
chr14	juncbase	jcn_only_AD	76373020	76420767	.	-	.	gene_id "jcn_only_AD.333"; transcript_id "jcn_only_AD.333"; gene_name "CUFF.1975"; flanks "76373020-,76420767-"; structure "1^,2^"; splice_chain "76373020^,76407837^"; psi "0.613444";
chr7	juncbase	intron_retention	150837203	150838985	.	-	.	gene_id "intron_retention.315"; transcript_id "intron_retention.315"; gene_name "CUFF.1975"; flanks "150837203-,150838985^"; structure "0,1^2-"; splice_chain ",150837203^150838985-"; psi "0.260300";
chr3	juncbase	jcn_only_AD	49355742	49349087	.	-	.	gene_id "jcn_only_AD.334"; transcript_id "jcn_only_AD.334"; gene_name "CUFF.1975"; flanks "49355742-,49349087-"; structure "1^,2^"; splice_chain "49355742^,49351304^"; psi "0.847289";
chr3	juncbase	jcn_only_AD	49362135	49349087	.	-	.	gene_id "jcn_only_AD.335"; transcript_id "jcn_only_AD.335"; gene_name "CUFF.1975"; flanks "49362135-,49349087-"; structure "1^,2^"; splice_chain "49362135^,49351304^"; psi "0.857117";
chr1	juncbase	intron_retention	27425703	27425495	.	-	.	gene_id "intron_retention.316"; transcript_id "intron_retention.316"; gene_name "CUFF.1975"; flanks "27425703-,27425495^"; structure "0,1^2-"; splice_chain ",27425703^27425495-"; psi "0.697100";
chr2	juncbase	jcn_only_AA	171400498	171508138	.	-	.	gene_id "jcn_only_AA.281"; transcript_id "jcn_only_AA.281"; gene_name "CUFF.1975"; flanks "171400498^,171508138^"; structure "1-,2-"; splice_chain "171503419-,171508138-"; psi "0.833300";
chr15	juncbase	jcn_only_AD	64445538	64445851	.	-	.	gene_id "jcn_only_AD.336"; transcript_id "jcn_only_AD.336"; gene_name "CUFF.1975"; flanks "64445538-,64445851-"; structure "1^,2^"; splice_chain "64445538^,64445585^"; psi "0.893300";
chr6	juncbase	jcn_only_AD	112558117	112627531	.	-	.	gene_id "jcn_only_AD.337"; transcript_id "jcn_only_AD.337"; gene_name "CUFF.1975"; flanks "112558117-,112627531-"; structure "1^,2^"; splice_chain "112558117^,112604369^"; psi "0.307114";
chr10	juncbase	jcn_only_AD	78647049	78637648	.	-	.	gene_id "jcn_only_AD.338"; transcript_id "jcn_only_AD.338"; gene_name "CUFF.1975"; flanks "78647049-,78637648-"; structure "1^,2^"; splice_chain "78647049^,78644747^"; psi "0.571400";
chr16	juncbase	intron_retention	14020613	14021979	.	-	.	gene_id "intron_retention.317"; transcript_id "intron_retention.317"; gene_name "CUFF.1975"; flanks "14020613-,14021979^"; structure "0,1^2-"; splice_chain ",14020613^14021979-"; psi "0.788800";
chr9	juncbase	cassette	133333976	133342112	.	-	.	gene_id "cassette.255"; transcript_id "cassette.255"; gene_name "CUFF.1975"; flanks "133333976^,133342112-"; structure "0,1-2^"; splice_chain ",133339498-133339554^"; psi "0.851200";
chr3	juncbase	jcn_only_AD	19989013	19992298	.	-	.	gene_id "jcn_only_AD.339"; transcript_id "jcn_only_AD.339"; gene_name "CUFF.1975"; flanks "19989013-,19992298-"; structure "1^,2^"; splice_chain "19989013^,19989355^"; psi "0.960500";
chr3	juncbase	cassette	47017843	46982555	.	-	.	gene_id "cassette.256"; transcript_id "cassette.256"; gene_name "CUFF.1975"; flanks "47017843^,46982555-"; structure "0,1-2^"; splice_chain ",47007619-47007474^"; psi "0.235700";
chr19	juncbase	intron_retention	6191876	6191605	.	-	.	gene_id "intron_retention.318"; transcript_id "intron_retention.318"; gene_name "CUFF.1975"; flanks "6191876-,6191605^"; structure "0,1^2-"; splice_chain ",6191876^6191605-"; psi "0.415900";
chr2	juncbase	intron_retention	242439588	242438829	.	-	.	gene_id "intron_retention.319"; transcript_id "intron_retention.319"; gene_name "CUFF.1975"; flanks "242439588-,242438829^"; structure "0,1^2-"; splice_chain ",242439588^242438829-"; psi "0.160900";
chr2	juncbase	intron_retention	675758	675630	.	-	.	gene_id "intron_retention.320"; transcript_id "intron_retention.320"; gene_name "CUFF.1975"; flanks "675758-,675630^"; structure "0,1^2-"; splice_chain ",675758^675630-"; psi "0.386400";
chr6	juncbase	cassette	126317186	126319369	.	-	.	gene_id "cassette.257"; transcript_id "cassette.257"; gene_name "CUFF.1975"; flanks "126317186^,126319369-"; structure "0,1-2^"; splice_chain ",126319199-126319280^"; psi "0.745400";
chr15	juncbase	cassette	57523455	57524910	.	-	.	gene_id "cassette.258"; transcript_id "cassette.258"; gene_name "CUFF.1975"; flanks "57523455^,57524910-"; structure "0,1-2^"; splice_chain ",57524489-57524628^"; psi "0.515600";
chr19	juncbase	intron_retention	1438891	1439967	.	-	.	gene_id "intron_retention.321"; transcript_id "intron_retention.321"; gene_name "CUFF.1975"; flanks "1438891-,1439967^"; structure "0,1^2-"; splice_chain ",1438891^1439967-"; psi "0.453500";
chr10	juncbase	jcn_only_AA	80827145	80825576	.	-	.	gene_id "jcn_only_AA.282"; transcript_id "jcn_only_AA.282"; gene_name "CUFF.1975"; flanks "80827145^,80825576^"; structure "1-,2-"; splice_chain "80826343-,80825576-"; psi "0.991200";
chr17	juncbase	jcn_only_AD	79225293	79220861	.	-	.	gene_id "jcn_only_AD.340"; transcript_id "jcn_only_AD.340"; gene_name "CUFF.1975"; flanks "79225293-,79220861-"; structure "1^,2^"; splice_chain "79225293^,79223870^"; psi "0.684200";
chr19	juncbase	jcn_only_AD	44764155	44768467	.	-	.	gene_id "jcn_only_AD.341"; transcript_id "jcn_only_AD.341"; gene_name "CUFF.1975"; flanks "44764155-,44768467-"; structure "1^,2^"; splice_chain "44764155^,44764361^"; psi "0.516146";
chr19	juncbase	jcn_only_AD	44764091	44768467	.	-	.	gene_id "jcn_only_AD.342"; transcript_id "jcn_only_AD.342"; gene_name "CUFF.1975"; flanks "44764091-,44768467-"; structure "1^,2^"; splice_chain "44764091^,44764361^"; psi "0.102915";
chr11	juncbase	jcn_only_AD	119243417	119230944	.	-	.	gene_id "jcn_only_AD.343"; transcript_id "jcn_only_AD.343"; gene_name "CUFF.1975"; flanks "119243417-,119230944-"; structure "1^,2^"; splice_chain "119243417^,119234559^"; psi "0.046278";
chr11	juncbase	jcn_only_AD	119252183	119230944	.	-	.	gene_id "jcn_only_AD.344"; transcript_id "jcn_only_AD.344"; gene_name "CUFF.1975"; flanks "119252183-,119230944-"; structure "1^,2^"; splice_chain "119252183^,119234559^"; psi "0.076465";
chr17	juncbase	jcn_only_AD	77005746	77001563	.	-	.	gene_id "jcn_only_AD.345"; transcript_id "jcn_only_AD.345"; gene_name "CUFF.1975"; flanks "77005746-,77001563-"; structure "1^,2^"; splice_chain "77005746^,77004145^"; psi "0.852300";
chr12	juncbase	intron_retention	52979747	52979619	.	-	.	gene_id "intron_retention.322"; transcript_id "intron_retention.322"; gene_name "CUFF.1975"; flanks "52979747-,52979619^"; structure "0,1^2-"; splice_chain ",52979747^52979619-"; psi "0.270400";
chr15	juncbase	cassette	102241289	102226265	.	-	.	gene_id "cassette.259"; transcript_id "cassette.259"; gene_name "CUFF.1975"; flanks "102241289^,102226265-"; structure "0,1-2^"; splice_chain ",102239638-102239534^"; psi "0.661500";
chr3	juncbase	cassette	186681714	186769037	.	-	.	gene_id "cassette.260"; transcript_id "cassette.260"; gene_name "CUFF.1975"; flanks "186681714^,186769037-"; structure "0,1-2^"; splice_chain ",186756530-186756661^"; psi "0.937900";
chrX	juncbase	jcn_only_AA	13794357	13791149	.	-	.	gene_id "jcn_only_AA.283"; transcript_id "jcn_only_AA.283"; gene_name "CUFF.1975"; flanks "13794357^,13791149^"; structure "1-,2-"; splice_chain "13792743-,13791149-"; psi "0.271300";
chr11	juncbase	intron_retention	8950924	8949229	.	-	.	gene_id "intron_retention.323"; transcript_id "intron_retention.323"; gene_name "CUFF.1975"; flanks "8950924-,8949229^"; structure "0,1^2-"; splice_chain ",8950924^8949229-"; psi "0.886600";
chr3	juncbase	intron_retention	19992553	20017135	.	-	.	gene_id "intron_retention.324"; transcript_id "intron_retention.324"; gene_name "CUFF.1975"; flanks "19992553-,20017135^"; structure "0,1^2-"; splice_chain ",19992553^20017135-"; psi "0.939300";
chr3	juncbase	intron_retention	33481826	33481417	.	-	.	gene_id "intron_retention.325"; transcript_id "intron_retention.325"; gene_name "CUFF.1975"; flanks "33481826-,33481417^"; structure "0,1^2-"; splice_chain ",33481826^33481417-"; psi "0.285700";
chr22	juncbase	jcn_only_AA	21841854	21841216	.	-	.	gene_id "jcn_only_AA.284"; transcript_id "jcn_only_AA.284"; gene_name "CUFF.1975"; flanks "21841854^,21841216^"; structure "1-,2-"; splice_chain "21841264-,21841216-"; psi "0.919400";
chr9	juncbase	cassette	123550047	123538504	.	-	.	gene_id "cassette.261"; transcript_id "cassette.261"; gene_name "CUFF.1975"; flanks "123550047^,123538504-"; structure "0,1-2^"; splice_chain ",123540823-123540629^"; psi "0.660800";
chr8	juncbase	intron_retention	38003481	38002833	.	-	.	gene_id "intron_retention.326"; transcript_id "intron_retention.326"; gene_name "CUFF.1975"; flanks "38003481-,38002833^"; structure "0,1^2-"; splice_chain ",38003481^38002833-"; psi "0.528300";
chr17	juncbase	intron_retention	66511293	66511535	.	-	.	gene_id "intron_retention.327"; transcript_id "intron_retention.327"; gene_name "CUFF.1975"; flanks "66511293-,66511535^"; structure "0,1^2-"; splice_chain ",66511293^66511535-"; psi "0.564600";
chr7	juncbase	jcn_only_AD	136554165	136699567	.	-	.	gene_id "jcn_only_AD.346"; transcript_id "jcn_only_AD.346"; gene_name "CUFF.1975"; flanks "136554165-,136699567-"; structure "1^,2^"; splice_chain "136554165^,136677011^"; psi "0.830600";
chr9	juncbase	jcn_only_AD	125613379	125612101	.	-	.	gene_id "jcn_only_AD.347"; transcript_id "jcn_only_AD.347"; gene_name "CUFF.1975"; flanks "125613379-,125612101-"; structure "1^,2^"; splice_chain "125613379^,125613360^"; psi "0.126600";
chr16	juncbase	jcn_only_AD	4475479	4466962	.	-	.	gene_id "jcn_only_AD.348"; transcript_id "jcn_only_AD.348"; gene_name "CUFF.1975"; flanks "4475479-,4466962-"; structure "1^,2^"; splice_chain "4475479^,4470360^"; psi "0.486500";
chr2	juncbase	jcn_only_AA	219457430	219458892	.	-	.	gene_id "jcn_only_AA.285"; transcript_id "jcn_only_AA.285"; gene_name "CUFF.1975"; flanks "219457430^,219458892^"; structure "1-,2-"; splice_chain "219458251-,219458892-"; psi "0.816669";
chr2	juncbase	jcn_only_AA	219457430	219458831	.	-	.	gene_id "jcn_only_AA.286"; transcript_id "jcn_only_AA.286"; gene_name "CUFF.1975"; flanks "219457430^,219458831^"; structure "1-,2-"; splice_chain "219458251-,219458831-"; psi "0.664671";
chr17	juncbase	intron_retention	15603482	15603587	.	-	.	gene_id "intron_retention.328"; transcript_id "intron_retention.328"; gene_name "CUFF.1975"; flanks "15603482-,15603587^"; structure "0,1^2-"; splice_chain ",15603482^15603587-"; psi "0.279400";
chr17	juncbase	intron_retention	61904874	61905189	.	-	.	gene_id "intron_retention.329"; transcript_id "intron_retention.329"; gene_name "CUFF.1975"; flanks "61904874-,61905189^"; structure "0,1^2-"; splice_chain ",61904874^61905189-"; psi "0.785100";
chr5	juncbase	cassette	127418427	127412785	.	-	.	gene_id "cassette.262"; transcript_id "cassette.262"; gene_name "CUFF.1975"; flanks "127418427^,127412785-"; structure "0,1-2^"; splice_chain ",127417883-127417665^"; psi "0.617200";
chr5	juncbase	cassette	127418427	127396936	.	-	.	gene_id "cassette.263"; transcript_id "cassette.263"; gene_name "CUFF.1975"; flanks "127418427^,127396936-"; structure "0,1-2^"; splice_chain ",127417883-127417665^"; psi "0.617200";
chr2	juncbase	intron_retention	46842076	46839483	.	-	.	gene_id "intron_retention.330"; transcript_id "intron_retention.330"; gene_name "CUFF.1975"; flanks "46842076-,46839483^"; structure "0,1^2-"; splice_chain ",46842076^46839483-"; psi "0.129600";
chr8	juncbase	jcn_only_AD	75233823	75272372	.	-	.	gene_id "jcn_only_AD.349"; transcript_id "jcn_only_AD.349"; gene_name "CUFF.1975"; flanks "75233823-,75272372-"; structure "1^,2^"; splice_chain "75233823^,75263701^"; psi "0.871348";
chr8	juncbase	jcn_only_AD	75233480	75272372	.	-	.	gene_id "jcn_only_AD.350"; transcript_id "jcn_only_AD.350"; gene_name "CUFF.1975"; flanks "75233480-,75272372-"; structure "1^,2^"; splice_chain "75233480^,75263701^"; psi "0.826778";
chr8	juncbase	jcn_only_AD	75263556	75272372	.	-	.	gene_id "jcn_only_AD.351"; transcript_id "jcn_only_AD.351"; gene_name "CUFF.1975"; flanks "75263556-,75272372-"; structure "1^,2^"; splice_chain "75263556^,75263701^"; psi "0.887975";
chr8	juncbase	jcn_only_AD	75262813	75272372	.	-	.	gene_id "jcn_only_AD.352"; transcript_id "jcn_only_AD.352"; gene_name "CUFF.1975"; flanks "75262813-,75272372-"; structure "1^,2^"; splice_chain "75262813^,75263701^"; psi "0.705405";
chr3	juncbase	cassette	27410716	27394410	.	-	.	gene_id "cassette.264"; transcript_id "cassette.264"; gene_name "CUFF.1975"; flanks "27410716^,27394410-"; structure "0,1-2^"; splice_chain ",27409053-27409014^"; psi "0.160000";
chr15	juncbase	jcn_only_AA	45492925	45470504	.	-	.	gene_id "jcn_only_AA.287"; transcript_id "jcn_only_AA.287"; gene_name "CUFF.1975"; flanks "45492925^,45470504^"; structure "1-,2-"; splice_chain "45491298-,45470504-"; psi "0.969434";
chr3	juncbase	jcn_only_AA	33644444	33638226	.	-	.	gene_id "jcn_only_AA.288"; transcript_id "jcn_only_AA.288"; gene_name "CUFF.1975"; flanks "33644444^,33638226^"; structure "1-,2-"; splice_chain "33644081-,33638226-"; psi "0.052400";
chr3	juncbase	jcn_only_AD	156262097	156261058	.	-	.	gene_id "jcn_only_AD.353"; transcript_id "jcn_only_AD.353"; gene_name "CUFF.1975"; flanks "156262097-,156261058-"; structure "1^,2^"; splice_chain "156262097^,156262083^"; psi "0.921900";
chr6	juncbase	cassette	111306341	111312950	.	-	.	gene_id "cassette.265"; transcript_id "cassette.265"; gene_name "CUFF.1975"; flanks "111306341^,111312950-"; structure "0,1-2^"; splice_chain ",111310191-111310268^"; psi "0.990400";
chr7	juncbase	jcn_only_AA	6630106	6631334	.	-	.	gene_id "jcn_only_AA.289"; transcript_id "jcn_only_AA.289"; gene_name "CUFF.1975"; flanks "6630106^,6631334^"; structure "1-,2-"; splice_chain "6631277-,6631334-"; psi "0.472700";
chr5	juncbase	intron_retention	178050257	178046897	.	-	.	gene_id "intron_retention.331"; transcript_id "intron_retention.331"; gene_name "CUFF.1975"; flanks "178050257-,178046897^"; structure "0,1^2-"; splice_chain ",178050257^178046897-"; psi "0.778800";
chr2	juncbase	jcn_only_AA	169787175	169783800	.	-	.	gene_id "jcn_only_AA.290"; transcript_id "jcn_only_AA.290"; gene_name "CUFF.1975"; flanks "169787175^,169783800^"; structure "1-,2-"; splice_chain "169783872-,169783800-"; psi "0.842100";
chr2	juncbase	intron_retention	262631	260897	.	-	.	gene_id "intron_retention.332"; transcript_id "intron_retention.332"; gene_name "CUFF.1975"; flanks "262631-,260897^"; structure "0,1^2-"; splice_chain ",262631^260897-"; psi "0.237300";
chr19	juncbase	intron_retention	36139795	36142135	.	-	.	gene_id "intron_retention.333"; transcript_id "intron_retention.333"; gene_name "CUFF.1975"; flanks "36139795-,36142135^"; structure "0,1^2-"; splice_chain ",36139795^36142135-"; psi "0.646500";
chrX	juncbase	jcn_only_AD	19953927	19948058	.	-	.	gene_id "jcn_only_AD.354"; transcript_id "jcn_only_AD.354"; gene_name "CUFF.1975"; flanks "19953927-,19948058-"; structure "1^,2^"; splice_chain "19953927^,19953476^"; psi "0.826100";
chr19	juncbase	intron_retention	51538062	51537896	.	-	.	gene_id "intron_retention.334"; transcript_id "intron_retention.334"; gene_name "CUFF.1975"; flanks "51538062-,51537896^"; structure "0,1^2-"; splice_chain ",51538062^51537896-"; psi "0.019600";
chr14	juncbase	jcn_only_AD	104245082	104224088	.	-	.	gene_id "jcn_only_AD.355"; transcript_id "jcn_only_AD.355"; gene_name "CUFF.1975"; flanks "104245082-,104224088-"; structure "1^,2^"; splice_chain "104245082^,104230200^"; psi "0.865136";
chr6	juncbase	intron_retention	33244044	33244168	.	-	.	gene_id "intron_retention.335"; transcript_id "intron_retention.335"; gene_name "CUFF.1975"; flanks "33244044-,33244168^"; structure "0,1^2-"; splice_chain ",33244044^33244168-"; psi "0.030500";
chr5	juncbase	intron_retention	54456224	54456880	.	-	.	gene_id "intron_retention.336"; transcript_id "intron_retention.336"; gene_name "CUFF.1975"; flanks "54456224-,54456880^"; structure "0,1^2-"; splice_chain ",54456224^54456880-"; psi "0.478300";
chr19	juncbase	jcn_only_AA	6199491	6192040	.	-	.	gene_id "jcn_only_AA.291"; transcript_id "jcn_only_AA.291"; gene_name "CUFF.1975"; flanks "6199491^,6192040^"; structure "1-,2-"; splice_chain "6192064-,6192040-"; psi "0.675009";
chr19	juncbase	jcn_only_AA	6199491	6176454	.	-	.	gene_id "jcn_only_AA.292"; transcript_id "jcn_only_AA.292"; gene_name "CUFF.1975"; flanks "6199491^,6176454^"; structure "1-,2-"; splice_chain "6192064-,6176454-"; psi "0.369334";
chr7	juncbase	jcn_only_AA	19156294	19153546	.	-	.	gene_id "jcn_only_AA.293"; transcript_id "jcn_only_AA.293"; gene_name "CUFF.1975"; flanks "19156294^,19153546^"; structure "1-,2-"; splice_chain "19155754-,19153546-"; psi "0.932400";
chr15	juncbase	cassette	40565877	40568128	.	-	.	gene_id "cassette.266"; transcript_id "cassette.266"; gene_name "CUFF.1975"; flanks "40565877^,40568128-"; structure "0,1-2^"; splice_chain ",40566343-40566477^"; psi "0.680900";
chr22	juncbase	jcn_only_AD	29664338	29668205	.	-	.	gene_id "jcn_only_AD.356"; transcript_id "jcn_only_AD.356"; gene_name "CUFF.1975"; flanks "29664338-,29668205-"; structure "1^,2^"; splice_chain "29664338^,29665651^"; psi "0.967600";
chr2	juncbase	jcn_only_AD	171034799	171055718	.	-	.	gene_id "jcn_only_AD.357"; transcript_id "jcn_only_AD.357"; gene_name "CUFF.1975"; flanks "171034799-,171055718-"; structure "1^,2^"; splice_chain "171034799^,171036691^"; psi "0.529400";
chr19	juncbase	jcn_only_AD	33980902	33968996	.	-	.	gene_id "jcn_only_AD.358"; transcript_id "jcn_only_AD.358"; gene_name "CUFF.1975"; flanks "33980902-,33968996-"; structure "1^,2^"; splice_chain "33980902^,33978156^"; psi "0.142286";
chr2	juncbase	cassette	73297589	73268060	.	-	.	gene_id "cassette.267"; transcript_id "cassette.267"; gene_name "CUFF.1975"; flanks "73297589^,73268060-"; structure "0,1-2^"; splice_chain ",73285725-73285657^"; psi "0.824300";
chr11	juncbase	intron_retention	62363930	62363809	.	-	.	gene_id "intron_retention.337"; transcript_id "intron_retention.337"; gene_name "CUFF.1975"; flanks "62363930-,62363809^"; structure "0,1^2-"; splice_chain ",62363930^62363809-"; psi "0.189200";
chr9	juncbase	cassette	34989828	34993197	.	-	.	gene_id "cassette.268"; transcript_id "cassette.268"; gene_name "CUFF.1975"; flanks "34989828^,34993197-"; structure "0,1-2^"; splice_chain ",34990665-34990809^"; psi "0.192500";
chr4	juncbase	jcn_only_AA	99403156	99399897	.	-	.	gene_id "jcn_only_AA.294"; transcript_id "jcn_only_AA.294"; gene_name "CUFF.1975"; flanks "99403156^,99399897^"; structure "1-,2-"; splice_chain "99399961-,99399897-"; psi "0.040000";
chr22	juncbase	jcn_only_AA	21832874	21832390	.	-	.	gene_id "jcn_only_AA.295"; transcript_id "jcn_only_AA.295"; gene_name "CUFF.1975"; flanks "21832874^,21832390^"; structure "1-,2-"; splice_chain "21832450-,21832390-"; psi "0.272700";
chr2	juncbase	intron_retention	27669127	27668855	.	-	.	gene_id "intron_retention.338"; transcript_id "intron_retention.338"; gene_name "CUFF.1975"; flanks "27669127-,27668855^"; structure "0,1^2-"; splice_chain ",27669127^27668855-"; psi "0.446400";
chr8	juncbase	jcn_only_AA	56663523	56652777	.	-	.	gene_id "jcn_only_AA.296"; transcript_id "jcn_only_AA.296"; gene_name "CUFF.1975"; flanks "56663523^,56652777^"; structure "1-,2-"; splice_chain "56657680-,56652777-"; psi "0.144225";
chr8	juncbase	jcn_only_AA	56663523	56637818	.	-	.	gene_id "jcn_only_AA.297"; transcript_id "jcn_only_AA.297"; gene_name "CUFF.1975"; flanks "56663523^,56637818^"; structure "1-,2-"; splice_chain "56657680-,56637818-"; psi "0.829537";
chr8	juncbase	jcn_only_AA	56663523	56656179	.	-	.	gene_id "jcn_only_AA.298"; transcript_id "jcn_only_AA.298"; gene_name "CUFF.1975"; flanks "56663523^,56656179^"; structure "1-,2-"; splice_chain "56657680-,56656179-"; psi "0.355537";
chr16	juncbase	intron_retention	89789591	89789687	.	-	.	gene_id "intron_retention.339"; transcript_id "intron_retention.339"; gene_name "CUFF.1975"; flanks "89789591-,89789687^"; structure "0,1^2-"; splice_chain ",89789591^89789687-"; psi "0.279100";
chr15	juncbase	intron_retention	64444525	64444837	.	-	.	gene_id "intron_retention.340"; transcript_id "intron_retention.340"; gene_name "CUFF.1975"; flanks "64444525-,64444837^"; structure "0,1^2-"; splice_chain ",64444525^64444837-"; psi "0.619700";
chr9	juncbase	intron_retention	123555427	123550464	.	-	.	gene_id "intron_retention.341"; transcript_id "intron_retention.341"; gene_name "CUFF.1975"; flanks "123555427-,123550464^"; structure "0,1^2-"; splice_chain ",123555427^123550464-"; psi "0.920000";
chr3	juncbase	jcn_only_AA	33458250	33454319	.	-	.	gene_id "jcn_only_AA.299"; transcript_id "jcn_only_AA.299"; gene_name "CUFF.1975"; flanks "33458250^,33454319^"; structure "1-,2-"; splice_chain "33457592-,33454319-"; psi "0.695100";
chr8	juncbase	intron_retention	30657233	30643505	.	-	.	gene_id "intron_retention.342"; transcript_id "intron_retention.342"; gene_name "CUFF.1975"; flanks "30657233-,30643505^"; structure "0,1^2-"; splice_chain ",30657233^30643505-"; psi "0.436200";
chr11	juncbase	cassette	8457041	8414257	.	-	.	gene_id "cassette.269"; transcript_id "cassette.269"; gene_name "CUFF.1975"; flanks "8457041^,8414257-"; structure "0,1-2^"; splice_chain ",8435239-8435042^"; psi "0.710200";
chr13	juncbase	jcn_only_AA	25542344	25525626	.	-	.	gene_id "jcn_only_AA.300"; transcript_id "jcn_only_AA.300"; gene_name "CUFF.1975"; flanks "25542344^,25525626^"; structure "1-,2-"; splice_chain "25541591-,25525626-"; psi "0.830900";
chr2	juncbase	jcn_only_AD	68384506	68374699	.	-	.	gene_id "jcn_only_AD.359"; transcript_id "jcn_only_AD.359"; gene_name "CUFF.1975"; flanks "68384506-,68374699-"; structure "1^,2^"; splice_chain "68384506^,68384393^"; psi "0.565287";
chr22	juncbase	jcn_only_AA	51018403	51018231	.	-	.	gene_id "jcn_only_AA.301"; transcript_id "jcn_only_AA.301"; gene_name "CUFF.1975"; flanks "51018403^,51018231^"; structure "1-,2-"; splice_chain "51018259-,51018231-"; psi "0.016600";
chr8	juncbase	jcn_only_AA	71564987	71572380	.	-	.	gene_id "jcn_only_AA.302"; transcript_id "jcn_only_AA.302"; gene_name "CUFF.1975"; flanks "71564987^,71572380^"; structure "1-,2-"; splice_chain "71565930-,71572380-"; psi "0.419600";
chr10	juncbase	intron_retention	73975965	73975867	.	-	.	gene_id "intron_retention.343"; transcript_id "intron_retention.343"; gene_name "CUFF.1975"; flanks "73975965-,73975867^"; structure "0,1^2-"; splice_chain ",73975965^73975867-"; psi "0.250000";
chr10	juncbase	cassette	80721011	80705746	.	-	.	gene_id "cassette.270"; transcript_id "cassette.270"; gene_name "CUFF.1975"; flanks "80721011^,80705746-"; structure "0,1-2^"; splice_chain ",80720473-80720262^"; psi "0.840900";
chr2	juncbase	intron_retention	110922097	110920712	.	-	.	gene_id "intron_retention.344"; transcript_id "intron_retention.344"; gene_name "CUFF.1975"; flanks "110922097-,110920712^"; structure "0,1^2-"; splice_chain ",110922097^110920712-"; psi "0.818200";
chr7	juncbase	jcn_only_AA	156619299	156589186	.	-	.	gene_id "jcn_only_AA.303"; transcript_id "jcn_only_AA.303"; gene_name "CUFF.1975"; flanks "156619299^,156589186^"; structure "1-,2-"; splice_chain "156616617-,156589186-"; psi "0.974400";
chr18	juncbase	intron_retention	210031	210386	.	-	.	gene_id "intron_retention.345"; transcript_id "intron_retention.345"; gene_name "CUFF.1975"; flanks "210031-,210386^"; structure "0,1^2-"; splice_chain ",210031^210386-"; psi "0.328600";
chr17	juncbase	jcn_only_AA	1617150	1616189	.	-	.	gene_id "jcn_only_AA.304"; transcript_id "jcn_only_AA.304"; gene_name "CUFF.1975"; flanks "1617150^,1616189^"; structure "1-,2-"; splice_chain "1616198-,1616189-"; psi "0.415477";
chr17	juncbase	jcn_only_AA	1617150	1615693	.	-	.	gene_id "jcn_only_AA.305"; transcript_id "jcn_only_AA.305"; gene_name "CUFF.1975"; flanks "1617150^,1615693^"; structure "1-,2-"; splice_chain "1616198-,1615693-"; psi "0.366449";
chr17	juncbase	jcn_only_AA	1617150	1615940	.	-	.	gene_id "jcn_only_AA.306"; transcript_id "jcn_only_AA.306"; gene_name "CUFF.1975"; flanks "1617150^,1615940^"; structure "1-,2-"; splice_chain "1616198-,1615940-"; psi "0.279675";
chr5	juncbase	jcn_only_AA	145651237	145694459	.	-	.	gene_id "jcn_only_AA.307"; transcript_id "jcn_only_AA.307"; gene_name "CUFF.1975"; flanks "145651237^,145694459^"; structure "1-,2-"; splice_chain "145664185-,145694459-"; psi "0.391300";
chr22	juncbase	jcn_only_AD	37699443	37705253	.	-	.	gene_id "jcn_only_AD.360"; transcript_id "jcn_only_AD.360"; gene_name "CUFF.1975"; flanks "37699443-,37705253-"; structure "1^,2^"; splice_chain "37699443^,37700327^"; psi "0.551000";
chr3	juncbase	cassette	186756661	186769037	.	-	.	gene_id "cassette.271"; transcript_id "cassette.271"; gene_name "CUFF.1975"; flanks "186756661^,186769037-"; structure "0,1-2^"; splice_chain ",186760442-186761098^"; psi "0.992500";
chr2	juncbase	intron_retention	61721029	61720188	.	-	.	gene_id "intron_retention.346"; transcript_id "intron_retention.346"; gene_name "CUFF.1975"; flanks "61721029-,61720188^"; structure "0,1^2-"; splice_chain ",61721029^61720188-"; psi "0.470000";
chr1	juncbase	jcn_only_AA	110211993	110212258	.	-	.	gene_id "jcn_only_AA.308"; transcript_id "jcn_only_AA.308"; gene_name "CUFF.1975"; flanks "110211993^,110212258^"; structure "1-,2-"; splice_chain "110212093-,110212258-"; psi "0.018700";
chr2	juncbase	jcn_only_AA	99232996	99234631	.	-	.	gene_id "jcn_only_AA.309"; transcript_id "jcn_only_AA.309"; gene_name "CUFF.1975"; flanks "99232996^,99234631^"; structure "1-,2-"; splice_chain "99234609-,99234631-"; psi "0.737800";
chr7	juncbase	jcn_only_AD	92158238	92158790	.	-	.	gene_id "jcn_only_AD.361"; transcript_id "jcn_only_AD.361"; gene_name "CUFF.1975"; flanks "92158238-,92158790-"; structure "1^,2^"; splice_chain "92158238^,92158497^"; psi "0.446200";
chr18	juncbase	intron_retention	44426670	44424802	.	-	.	gene_id "intron_retention.347"; transcript_id "intron_retention.347"; gene_name "CUFF.1975"; flanks "44426670-,44424802^"; structure "0,1^2-"; splice_chain ",44426670^44424802-"; psi "0.353500";
chr2	juncbase	jcn_only_AA	3461464	3464034	.	-	.	gene_id "jcn_only_AA.310"; transcript_id "jcn_only_AA.310"; gene_name "CUFF.1975"; flanks "3461464^,3464034^"; structure "1-,2-"; splice_chain "3461566-,3464034-"; psi "0.971500";
chr17	juncbase	jcn_only_AD	15586350	15584536	.	-	.	gene_id "jcn_only_AD.362"; transcript_id "jcn_only_AD.362"; gene_name "CUFF.1975"; flanks "15586350-,15584536-"; structure "1^,2^"; splice_chain "15586350^,15586168^"; psi "0.458300";
chr11	juncbase	jcn_only_AA	64000086	64000176	.	-	.	gene_id "jcn_only_AA.311"; transcript_id "jcn_only_AA.311"; gene_name "CUFF.1975"; flanks "64000086^,64000176^"; structure "1-,2-"; splice_chain "64000173-,64000176-"; psi "0.934700";
chr22	juncbase	intron_retention	51018403	51018259	.	-	.	gene_id "intron_retention.348"; transcript_id "intron_retention.348"; gene_name "CUFF.1975"; flanks "51018403-,51018259^"; structure "0,1^2-"; splice_chain ",51018403^51018259-"; psi "0.115300";
chr2	juncbase	cassette	11593708	11587900	.	-	.	gene_id "cassette.272"; transcript_id "cassette.272"; gene_name "CUFF.1975"; flanks "11593708^,11587900-"; structure "0,1-2^"; splice_chain ",11591932-11591328^"; psi "0.974100";
chr19	juncbase	jcn_only_AD	17608273	17611087	.	-	.	gene_id "jcn_only_AD.363"; transcript_id "jcn_only_AD.363"; gene_name "CUFF.1975"; flanks "17608273-,17611087-"; structure "1^,2^"; splice_chain "17608273^,17610763^"; psi "0.863400";
chrX	juncbase	intron_retention	19932270	19931597	.	-	.	gene_id "intron_retention.349"; transcript_id "intron_retention.349"; gene_name "CUFF.1975"; flanks "19932270-,19931597^"; structure "0,1^2-"; splice_chain ",19932270^19931597-"; psi "0.106000";
chr19	juncbase	intron_retention	40486053	40486193	.	-	.	gene_id "intron_retention.350"; transcript_id "intron_retention.350"; gene_name "CUFF.1975"; flanks "40486053-,40486193^"; structure "0,1^2-"; splice_chain ",40486053^40486193-"; psi "0.479000";
chr18	juncbase	intron_retention	61064267	61060782	.	-	.	gene_id "intron_retention.351"; transcript_id "intron_retention.351"; gene_name "CUFF.1975"; flanks "61064267-,61060782^"; structure "0,1^2-"; splice_chain ",61064267^61060782-"; psi "0.064500";
chr12	juncbase	jcn_only_AD	50236637	50232798	.	-	.	gene_id "jcn_only_AD.364"; transcript_id "jcn_only_AD.364"; gene_name "CUFF.1975"; flanks "50236637-,50232798-"; structure "1^,2^"; splice_chain "50236637^,50236169^"; psi "0.576900";
chr3	juncbase	cassette	27297787	27244048	.	-	.	gene_id "cassette.273"; transcript_id "cassette.273"; gene_name "CUFF.1975"; flanks "27297787^,27244048-"; structure "0,1-2^"; splice_chain ",27257371-27257223^"; psi "0.556800";
chr15	juncbase	jcn_only_AD	77750838	77756582	.	-	.	gene_id "jcn_only_AD.365"; transcript_id "jcn_only_AD.365"; gene_name "CUFF.1975"; flanks "77750838-,77756582-"; structure "1^,2^"; splice_chain "77750838^,77750900^"; psi "0.189800";
chr12	juncbase	intron_retention	7087583	7086687	.	-	.	gene_id "intron_retention.352"; transcript_id "intron_retention.352"; gene_name "CUFF.1975"; flanks "7087583-,7086687^"; structure "0,1^2-"; splice_chain ",7087583^7086687-"; psi "0.596200";
chr7	juncbase	jcn_only_AA	74982816	74981240	.	-	.	gene_id "jcn_only_AA.312"; transcript_id "jcn_only_AA.312"; gene_name "CUFF.1975"; flanks "74982816^,74981240^"; structure "1-,2-"; splice_chain "74982649-,74981240-"; psi "0.714300";
chr7	juncbase	jcn_only_AD	111127294	110603621	.	-	.	gene_id "jcn_only_AD.366"; transcript_id "jcn_only_AD.366"; gene_name "CUFF.1975"; flanks "111127294-,110603621-"; structure "1^,2^"; splice_chain "111127294^,111031894^"; psi "0.955050";
chr12	juncbase	cassette	25801428	25679889	.	-	.	gene_id "cassette.274"; transcript_id "cassette.274"; gene_name "CUFF.1975"; flanks "25801428^,25679889-"; structure "0,1-2^"; splice_chain ",25699488-25699308^"; psi "0.856200";
chr12	juncbase	jcn_only_AD	336731	335680	.	-	.	gene_id "jcn_only_AD.367"; transcript_id "jcn_only_AD.367"; gene_name "CUFF.1975"; flanks "336731-,335680-"; structure "1^,2^"; splice_chain "336731^,335819^"; psi "0.758900";
chr12	juncbase	intron_retention	77256590	77254193	.	-	.	gene_id "intron_retention.353"; transcript_id "intron_retention.353"; gene_name "CUFF.1975"; flanks "77256590-,77254193^"; structure "0,1^2-"; splice_chain ",77256590^77254193-"; psi "0.260900";
chr17	juncbase	jcn_only_AD	40744074	40738909	.	-	.	gene_id "jcn_only_AD.368"; transcript_id "jcn_only_AD.368"; gene_name "CUFF.1975"; flanks "40744074-,40738909-"; structure "1^,2^"; splice_chain "40744074^,40739852^"; psi "0.700400";
chr10	juncbase	intron_retention	73975965	73973089	.	-	.	gene_id "intron_retention.354"; transcript_id "intron_retention.354"; gene_name "CUFF.1975"; flanks "73975965-,73973089^"; structure "0,1^2-"; splice_chain ",73975965^73973089-"; psi "0.141700";
chr19	juncbase	intron_retention	50285226	50296293	.	-	.	gene_id "intron_retention.355"; transcript_id "intron_retention.355"; gene_name "CUFF.1975"; flanks "50285226-,50296293^"; structure "0,1^2-"; splice_chain ",50285226^50296293-"; psi "0.857100";
chr2	juncbase	jcn_only_AD	3453248	3461392	.	-	.	gene_id "jcn_only_AD.369"; transcript_id "jcn_only_AD.369"; gene_name "CUFF.1975"; flanks "3453248-,3461392-"; structure "1^,2^"; splice_chain "3453248^,3461000^"; psi "0.402187";
chr2	juncbase	jcn_only_AD	3447662	3461392	.	-	.	gene_id "jcn_only_AD.370"; transcript_id "jcn_only_AD.370"; gene_name "CUFF.1975"; flanks "3447662-,3461392-"; structure "1^,2^"; splice_chain "3447662^,3461000^"; psi "0.949116";
chr10	juncbase	jcn_only_AD	46147414	46143982	.	-	.	gene_id "jcn_only_AD.371"; transcript_id "jcn_only_AD.371"; gene_name "CUFF.1975"; flanks "46147414-,46143982-"; structure "1^,2^"; splice_chain "46147414^,46145180^"; psi "0.896000";
chr11	juncbase	intron_retention	5686399	5685403	.	-	.	gene_id "intron_retention.356"; transcript_id "intron_retention.356"; gene_name "CUFF.1975"; flanks "5686399-,5685403^"; structure "0,1^2-"; splice_chain ",5686399^5685403-"; psi "0.662500";
chr1	juncbase	intron_retention	11082298	11083250	.	-	.	gene_id "intron_retention.357"; transcript_id "intron_retention.357"; gene_name "CUFF.1975"; flanks "11082298-,11083250^"; structure "0,1^2-"; splice_chain ",11082298^11083250-"; psi "0.578100";
chr3	juncbase	intron_retention	107560952	107560866	.	-	.	gene_id "intron_retention.358"; transcript_id "intron_retention.358"; gene_name "CUFF.1975"; flanks "107560952-,107560866^"; structure "0,1^2-"; splice_chain ",107560952^107560866-"; psi "0.630600";
chrX	juncbase	intron_retention	13794357	13791149	.	-	.	gene_id "intron_retention.359"; transcript_id "intron_retention.359"; gene_name "CUFF.1975"; flanks "13794357-,13791149^"; structure "0,1^2-"; splice_chain ",13794357^13791149-"; psi "0.421200";
chrX	juncbase	jcn_only_AD	13801484	13798108	.	-	.	gene_id "jcn_only_AD.372"; transcript_id "jcn_only_AD.372"; gene_name "CUFF.1975"; flanks "13801484-,13798108-"; structure "1^,2^"; splice_chain "13801484^,13799034^"; psi "0.828000";
chr11	juncbase	jcn_only_AD	124767622	124767157	.	-	.	gene_id "jcn_only_AD.373"; transcript_id "jcn_only_AD.373"; gene_name "CUFF.1975"; flanks "124767622-,124767157-"; structure "1^,2^"; splice_chain "124767622^,124767484^"; psi "0.806045";
chr11	juncbase	jcn_only_AD	124768294	124767157	.	-	.	gene_id "jcn_only_AD.374"; transcript_id "jcn_only_AD.374"; gene_name "CUFF.1975"; flanks "124768294-,124767157-"; structure "1^,2^"; splice_chain "124768294^,124767484^"; psi "0.507613";
chr17	juncbase	jcn_only_AD	79895138	79894737	.	-	.	gene_id "jcn_only_AD.375"; transcript_id "jcn_only_AD.375"; gene_name "CUFF.1975"; flanks "79895138-,79894737-"; structure "1^,2^"; splice_chain "79895138^,79895104^"; psi "0.663148";
chr17	juncbase	jcn_only_AD	79895404	79894737	.	-	.	gene_id "jcn_only_AD.376"; transcript_id "jcn_only_AD.376"; gene_name "CUFF.1975"; flanks "79895404-,79894737-"; structure "1^,2^"; splice_chain "79895404^,79895104^"; psi "0.198630";
chr17	juncbase	jcn_only_AD	79895134	79894737	.	-	.	gene_id "jcn_only_AD.377"; transcript_id "jcn_only_AD.377"; gene_name "CUFF.1975"; flanks "79895134-,79894737-"; structure "1^,2^"; splice_chain "79895134^,79895104^"; psi "0.618996";
chr11	juncbase	intron_retention	831032	831224	.	-	.	gene_id "intron_retention.360"; transcript_id "intron_retention.360"; gene_name "CUFF.1975"; flanks "831032-,831224^"; structure "0,1^2-"; splice_chain ",831032^831224-"; psi "0.724100";
chr11	juncbase	intron_retention	2192927	2190925	.	-	.	gene_id "intron_retention.361"; transcript_id "intron_retention.361"; gene_name "CUFF.1975"; flanks "2192927-,2190925^"; structure "0,1^2-"; splice_chain ",2192927^2190925-"; psi "0.450000";
chr6	juncbase	intron_retention	43483344	43481371	.	-	.	gene_id "intron_retention.362"; transcript_id "intron_retention.362"; gene_name "CUFF.1975"; flanks "43483344-,43481371^"; structure "0,1^2-"; splice_chain ",43483344^43481371-"; psi "0.755300";
chr2	juncbase	intron_retention	676574	676238	.	-	.	gene_id "intron_retention.363"; transcript_id "intron_retention.363"; gene_name "CUFF.1975"; flanks "676574-,676238^"; structure "0,1^2-"; splice_chain ",676574^676238-"; psi "0.184200";
chr15	juncbase	jcn_only_AD	84898654	84874071	.	-	.	gene_id "jcn_only_AD.378"; transcript_id "jcn_only_AD.378"; gene_name "CUFF.1975"; flanks "84898654-,84874071-"; structure "1^,2^"; splice_chain "84898654^,84898604^"; psi "0.074100";
chr10	juncbase	jcn_only_AD	73887840	73857208	.	-	.	gene_id "jcn_only_AD.379"; transcript_id "jcn_only_AD.379"; gene_name "CUFF.1975"; flanks "73887840-,73857208-"; structure "1^,2^"; splice_chain "73887840^,73862608^"; psi "0.879838";
chr12	juncbase	jcn_only_AD	77272743	77260041	.	-	.	gene_id "jcn_only_AD.380"; transcript_id "jcn_only_AD.380"; gene_name "CUFF.1975"; flanks "77272743-,77260041-"; structure "1^,2^"; splice_chain "77272743^,77272718^"; psi "0.416300";
chr2	juncbase	intron_retention	242438054	242437764	.	-	.	gene_id "intron_retention.364"; transcript_id "intron_retention.364"; gene_name "CUFF.1975"; flanks "242438054-,242437764^"; structure "0,1^2-"; splice_chain ",242438054^242437764-"; psi "0.157800";
chrX	juncbase	intron_retention	153607897	153608050	.	-	.	gene_id "intron_retention.365"; transcript_id "intron_retention.365"; gene_name "CUFF.1975"; flanks "153607897-,153608050^"; structure "0,1^2-"; splice_chain ",153607897^153608050-"; psi "0.328600";
chr11	juncbase	cassette	118927731	118926879	.	-	.	gene_id "cassette.275"; transcript_id "cassette.275"; gene_name "CUFF.1975"; flanks "118927731^,118926879-"; structure "0,1-2^"; splice_chain ",118927116-118926991^"; psi "0.914300";
chr1	juncbase	jcn_only_AD	106146785	106132407	.	-	.	gene_id "jcn_only_AD.381"; transcript_id "jcn_only_AD.381"; gene_name "CUFF.1975"; flanks "106146785-,106132407-"; structure "1^,2^"; splice_chain "106146785^,106145899^"; psi "0.516370";
chr2	juncbase	jcn_only_AA	241404163	241404273	.	-	.	gene_id "jcn_only_AA.313"; transcript_id "jcn_only_AA.313"; gene_name "CUFF.1975"; flanks "241404163^,241404273^"; structure "1-,2-"; splice_chain "241404252-,241404273-"; psi "0.940100";
chr6	juncbase	intron_retention	31936573	31936648	.	-	.	gene_id "intron_retention.366"; transcript_id "intron_retention.366"; gene_name "CUFF.1975"; flanks "31936573-,31936648^"; structure "0,1^2-"; splice_chain ",31936573^31936648-"; psi "0.040200";
chr20	juncbase	jcn_only_AA	1532337	1517956	.	-	.	gene_id "jcn_only_AA.314"; transcript_id "jcn_only_AA.314"; gene_name "CUFF.1975"; flanks "1532337^,1517956^"; structure "1-,2-"; splice_chain "1517959-,1517956-"; psi "0.111500";
chr9	juncbase	intron_retention	123555632	123555535	.	-	.	gene_id "intron_retention.367"; transcript_id "intron_retention.367"; gene_name "CUFF.1975"; flanks "123555632-,123555535^"; structure "0,1^2-"; splice_chain ",123555632^123555535-"; psi "0.558700";
chr6	juncbase	jcn_only_AA	170118884	170117996	.	-	.	gene_id "jcn_only_AA.315"; transcript_id "jcn_only_AA.315"; gene_name "CUFF.1975"; flanks "170118884^,170117996^"; structure "1-,2-"; splice_chain "170118002-,170117996-"; psi "0.542100";
chr16	juncbase	intron_retention	2203223	2203579	.	-	.	gene_id "intron_retention.368"; transcript_id "intron_retention.368"; gene_name "CUFF.1975"; flanks "2203223-,2203579^"; structure "0,1^2-"; splice_chain ",2203223^2203579-"; psi "0.816700";
chr9	juncbase	cassette	15203821	15192693	.	-	.	gene_id "cassette.276"; transcript_id "cassette.276"; gene_name "CUFF.1975"; flanks "15203821^,15192693-"; structure "0,1-2^"; splice_chain ",15199923-15199859^"; psi "0.683300";
chrX	juncbase	intron_retention	152989789	152988743	.	-	.	gene_id "intron_retention.369"; transcript_id "intron_retention.369"; gene_name "CUFF.1975"; flanks "152989789-,152988743^"; structure "0,1^2-"; splice_chain ",152989789^152988743-"; psi "0.769900";
chr17	juncbase	jcn_only_AD	5436624	5436304	.	-	.	gene_id "jcn_only_AD.382"; transcript_id "jcn_only_AD.382"; gene_name "CUFF.1975"; flanks "5436624-,5436304-"; structure "1^,2^"; splice_chain "5436624^,5436612^"; psi "0.913000";
chr17	juncbase	jcn_only_AD	79895138	79894737	.	-	.	gene_id "jcn_only_AD.383"; transcript_id "jcn_only_AD.383"; gene_name "CUFF.1975"; flanks "79895138-,79894737-"; structure "1^,2^"; splice_chain "79895138^,79895069^"; psi "0.670223";
chr17	juncbase	jcn_only_AD	79895404	79894737	.	-	.	gene_id "jcn_only_AD.384"; transcript_id "jcn_only_AD.384"; gene_name "CUFF.1975"; flanks "79895404-,79894737-"; structure "1^,2^"; splice_chain "79895404^,79895069^"; psi "0.203747";
chr17	juncbase	jcn_only_AD	79895134	79894737	.	-	.	gene_id "jcn_only_AD.385"; transcript_id "jcn_only_AD.385"; gene_name "CUFF.1975"; flanks "79895134-,79894737-"; structure "1^,2^"; splice_chain "79895134^,79895069^"; psi "0.626476";
chr17	juncbase	jcn_only_AD	79895104	79894737	.	-	.	gene_id "jcn_only_AD.386"; transcript_id "jcn_only_AD.386"; gene_name "CUFF.1975"; flanks "79895104-,79894737-"; structure "1^,2^"; splice_chain "79895104^,79895069^"; psi "0.507959";
chr22	juncbase	jcn_only_AA	47188473	47189399	.	-	.	gene_id "jcn_only_AA.316"; transcript_id "jcn_only_AA.316"; gene_name "CUFF.1975"; flanks "47188473^,47189399^"; structure "1-,2-"; splice_chain "47189398-,47189399-"; psi "0.001633";
chr11	juncbase	intron_retention	2189096	2188746	.	-	.	gene_id "intron_retention.370"; transcript_id "intron_retention.370"; gene_name "CUFF.1975"; flanks "2189096-,2188746^"; structure "0,1^2-"; splice_chain ",2189096^2188746-"; psi "0.751900";
chr4	juncbase	jcn_only_AD	186253867	186260533	.	-	.	gene_id "jcn_only_AD.387"; transcript_id "jcn_only_AD.387"; gene_name "CUFF.1975"; flanks "186253867-,186260533-"; structure "1^,2^"; splice_chain "186253867^,186253913^"; psi "0.185600";
chr11	juncbase	intron_retention	8502081	8496363	.	-	.	gene_id "intron_retention.371"; transcript_id "intron_retention.371"; gene_name "CUFF.1975"; flanks "8502081-,8496363^"; structure "0,1^2-"; splice_chain ",8502081^8496363-"; psi "0.963800";
chr17	juncbase	intron_retention	79894846	79894737	.	-	.	gene_id "intron_retention.372"; transcript_id "intron_retention.372"; gene_name "CUFF.1975"; flanks "79894846-,79894737^"; structure "0,1^2-"; splice_chain ",79894846^79894737-"; psi "0.380800";
chr12	juncbase	intron_retention	3432618	3434256	.	-	.	gene_id "intron_retention.373"; transcript_id "intron_retention.373"; gene_name "CUFF.1975"; flanks "3432618-,3434256^"; structure "0,1^2-"; splice_chain ",3432618^3434256-"; psi "0.715300";
chr19	juncbase	cassette	55084902	55085543	.	-	.	gene_id "cassette.277"; transcript_id "cassette.277"; gene_name "CUFF.1975"; flanks "55084902^,55085543-"; structure "0,1-2^"; splice_chain ",55085298-55085379^"; psi "0.558600";
chr19	juncbase	jcn_only_AA	45251385	45254484	.	-	.	gene_id "jcn_only_AA.317"; transcript_id "jcn_only_AA.317"; gene_name "CUFF.1975"; flanks "45251385^,45254484^"; structure "1-,2-"; splice_chain "45251952-,45254484-"; psi "0.772700";
chr5	juncbase	jcn_only_AD	140027509	140028056	.	-	.	gene_id "jcn_only_AD.388"; transcript_id "jcn_only_AD.388"; gene_name "CUFF.1975"; flanks "140027509-,140028056-"; structure "1^,2^"; splice_chain "140027509^,140027592^"; psi "0.283400";
chr8	juncbase	jcn_only_AA	124629083	124646554	.	-	.	gene_id "jcn_only_AA.318"; transcript_id "jcn_only_AA.318"; gene_name "CUFF.1975"; flanks "124629083^,124646554^"; structure "1-,2-"; splice_chain "124637927-,124646554-"; psi "0.563800";
chr6	juncbase	jcn_only_AD	112382491	112385958	.	-	.	gene_id "jcn_only_AD.389"; transcript_id "jcn_only_AD.389"; gene_name "CUFF.1975"; flanks "112382491-,112385958-"; structure "1^,2^"; splice_chain "112382491^,112382598^"; psi "0.890500";
chr1	juncbase	cassette	245222760	245245385	.	-	.	gene_id "cassette.278"; transcript_id "cassette.278"; gene_name "CUFF.1975"; flanks "245222760^,245245385-"; structure "0,1-2^"; splice_chain ",245238876-245238913^"; psi "0.546200";
chr1	juncbase	cassette	167353188	167358825	.	-	.	gene_id "cassette.279"; transcript_id "cassette.279"; gene_name "CUFF.1975"; flanks "167353188^,167358825-"; structure "0,1-2^"; splice_chain ",167356418-167356484^"; psi "0.411100";
chr9	juncbase	intron_retention	130953004	130948014	.	-	.	gene_id "intron_retention.374"; transcript_id "intron_retention.374"; gene_name "CUFF.1975"; flanks "130953004-,130948014^"; structure "0,1^2-"; splice_chain ",130953004^130948014-"; psi "0.993700";
chr1	juncbase	cassette	2075780	2077466	.	-	.	gene_id "cassette.280"; transcript_id "cassette.280"; gene_name "CUFF.1975"; flanks "2075780^,2077466-"; structure "0,1-2^"; splice_chain ",2076828-2076950^"; psi "0.215400";
chr3	juncbase	jcn_only_AD	73651505	73453546	.	-	.	gene_id "jcn_only_AD.390"; transcript_id "jcn_only_AD.390"; gene_name "CUFF.1975"; flanks "73651505-,73453546-"; structure "1^,2^"; splice_chain "73651505^,73618302^"; psi "0.161339";
chr10	juncbase	intron_retention	80721656	80721164	.	-	.	gene_id "intron_retention.375"; transcript_id "intron_retention.375"; gene_name "CUFF.1975"; flanks "80721656-,80721164^"; structure "0,1^2-"; splice_chain ",80721656^80721164-"; psi "0.918900";
chr8	juncbase	jcn_only_AA	23190914	23186078	.	-	.	gene_id "jcn_only_AA.319"; transcript_id "jcn_only_AA.319"; gene_name "CUFF.1975"; flanks "23190914^,23186078^"; structure "1-,2-"; splice_chain "23186099-,23186078-"; psi "0.556679";
chr14	juncbase	cassette	39944159	39961459	.	-	.	gene_id "cassette.281"; transcript_id "cassette.281"; gene_name "CUFF.1975"; flanks "39944159^,39961459-"; structure "0,1-2^"; splice_chain ",39954221-39954461^"; psi "0.902200";
chr14	juncbase	cassette	50065921	50069088	.	-	.	gene_id "cassette.282"; transcript_id "cassette.282"; gene_name "CUFF.1975"; flanks "50065921^,50069088-"; structure "0,1-2^"; splice_chain ",50068260-50068367^"; psi "0.653800";
chr1	juncbase	intron_retention	2100556	2100957	.	-	.	gene_id "intron_retention.376"; transcript_id "intron_retention.376"; gene_name "CUFF.1975"; flanks "2100556-,2100957^"; structure "0,1^2-"; splice_chain ",2100556^2100957-"; psi "0.575800";
chr3	juncbase	cassette	141724283	141712427	.	-	.	gene_id "cassette.283"; transcript_id "cassette.283"; gene_name "CUFF.1975"; flanks "141724283^,141712427-"; structure "0,1-2^"; splice_chain ",141713983-141713862^"; psi "0.411400";
chr3	juncbase	cassette	141747421	141697524	.	-	.	gene_id "cassette.284"; transcript_id "cassette.284"; gene_name "CUFF.1975"; flanks "141747421^,141697524-"; structure "0,1-2^"; splice_chain ",141713983-141713862^"; psi "0.411400";
chr3	juncbase	cassette	141724283	141697524	.	-	.	gene_id "cassette.285"; transcript_id "cassette.285"; gene_name "CUFF.1975"; flanks "141724283^,141697524-"; structure "0,1-2^"; splice_chain ",141713983-141713862^"; psi "0.411400";
chr22	juncbase	intron_retention	20748952	20749623	.	-	.	gene_id "intron_retention.377"; transcript_id "intron_retention.377"; gene_name "CUFF.1975"; flanks "20748952-,20749623^"; structure "0,1^2-"; splice_chain ",20748952^20749623-"; psi "0.127700";
chr4	juncbase	cassette	77192921	77230297	.	-	.	gene_id "cassette.286"; transcript_id "cassette.286"; gene_name "CUFF.1975"; flanks "77192921^,77230297-"; structure "0,1-2^"; splice_chain ",77199222-77199377^"; psi "0.101900";
chr11	juncbase	intron_retention	5706246	5701468	.	-	.	gene_id "intron_retention.378"; transcript_id "intron_retention.378"; gene_name "CUFF.1975"; flanks "5706246-,5701468^"; structure "0,1^2-"; splice_chain ",5706246^5701468-"; psi "0.740000";
chr4	juncbase	cassette	83820866	83816927	.	-	.	gene_id "cassette.287"; transcript_id "cassette.287"; gene_name "CUFF.1975"; flanks "83820866^,83816927-"; structure "0,1-2^"; splice_chain ",83819215-83819142^"; psi "0.610100";
chr4	juncbase	cassette	83821230	83816927	.	-	.	gene_id "cassette.288"; transcript_id "cassette.288"; gene_name "CUFF.1975"; flanks "83821230^,83816927-"; structure "0,1-2^"; splice_chain ",83819215-83819142^"; psi "0.610100";
chr7	juncbase	cassette	102495224	102462650	.	-	.	gene_id "cassette.289"; transcript_id "cassette.289"; gene_name "CUFF.1975"; flanks "102495224^,102462650-"; structure "0,1-2^"; splice_chain ",102473421-102473287^"; psi "0.539500";
chr11	juncbase	cassette	8950924	8948721	.	-	.	gene_id "cassette.290"; transcript_id "cassette.290"; gene_name "CUFF.1975"; flanks "8950924^,8948721-"; structure "0,1-2^"; splice_chain ",8949255-8949050^"; psi "0.889200";
chr9	juncbase	intron_retention	34990608	34993197	.	-	.	gene_id "intron_retention.379"; transcript_id "intron_retention.379"; gene_name "CUFF.1975"; flanks "34990608-,34993197^"; structure "0,1^2-"; splice_chain ",34990608^34993197-"; psi "0.150800";
chr4	juncbase	intron_retention	20618570	20622027	.	-	.	gene_id "intron_retention.380"; transcript_id "intron_retention.380"; gene_name "CUFF.1975"; flanks "20618570-,20622027^"; structure "0,1^2-"; splice_chain ",20618570^20622027-"; psi "0.218200";
chr22	juncbase	intron_retention	29684775	29686402	.	-	.	gene_id "intron_retention.381"; transcript_id "intron_retention.381"; gene_name "CUFF.1975"; flanks "29684775-,29686402^"; structure "0,1^2-"; splice_chain ",29684775^29686402-"; psi "0.135400";
chr15	juncbase	jcn_only_AA	77471132	77451038	.	-	.	gene_id "jcn_only_AA.320"; transcript_id "jcn_only_AA.320"; gene_name "CUFF.1975"; flanks "77471132^,77451038^"; structure "1-,2-"; splice_chain "77470365-,77451038-"; psi "0.165500";
chr12	juncbase	jcn_only_AD	344256	332400	.	-	.	gene_id "jcn_only_AD.391"; transcript_id "jcn_only_AD.391"; gene_name "CUFF.1975"; flanks "344256-,332400-"; structure "1^,2^"; splice_chain "344256^,333158^"; psi "0.128079";
chr17	juncbase	intron_retention	20279444	20279148	.	-	.	gene_id "intron_retention.382"; transcript_id "intron_retention.382"; gene_name "CUFF.1975"; flanks "20279444-,20279148^"; structure "0,1^2-"; splice_chain ",20279444^20279148-"; psi "0.300800";
chr6	juncbase	jcn_only_AA	133049880	133047977	.	-	.	gene_id "jcn_only_AA.321"; transcript_id "jcn_only_AA.321"; gene_name "CUFF.1975"; flanks "133049880^,133047977^"; structure "1-,2-"; splice_chain "133048151-,133047977-"; psi "0.651200";
chrX	juncbase	jcn_only_AD	85302488	85282561	.	-	.	gene_id "jcn_only_AD.392"; transcript_id "jcn_only_AD.392"; gene_name "CUFF.1975"; flanks "85302488-,85282561-"; structure "1^,2^"; splice_chain "85302488^,85302251^"; psi "0.658500";
chr20	juncbase	jcn_only_AD	1532517	1517956	.	-	.	gene_id "jcn_only_AD.393"; transcript_id "jcn_only_AD.393"; gene_name "CUFF.1975"; flanks "1532517-,1517956-"; structure "1^,2^"; splice_chain "1532517^,1532337^"; psi "0.892600";
chr10	juncbase	jcn_only_AA	5123093	5138602	.	-	.	gene_id "jcn_only_AA.322"; transcript_id "jcn_only_AA.322"; gene_name "CUFF.1975"; flanks "5123093^,5138602^"; structure "1-,2-"; splice_chain "5123874-,5138602-"; psi "0.280400";
chrX	juncbase	cassette	15343142	15339894	.	-	.	gene_id "cassette.291"; transcript_id "cassette.291"; gene_name "CUFF.1975"; flanks "15343142^,15339894-"; structure "0,1-2^"; splice_chain ",15342993-15342787^"; psi "0.872800";
chr2	juncbase	cassette	197458232	197298182	.	-	.	gene_id "cassette.292"; transcript_id "cassette.292"; gene_name "CUFF.1975"; flanks "197458232^,197298182-"; structure "0,1-2^"; splice_chain ",197358099-197357968^"; psi "0.666700";
chr4	juncbase	jcn_only_AA	120434125	120449895	.	-	.	gene_id "jcn_only_AA.323"; transcript_id "jcn_only_AA.323"; gene_name "CUFF.1975"; flanks "120434125^,120449895^"; structure "1-,2-"; splice_chain "120440644-,120449895-"; psi "0.871300";
chr3	juncbase	intron_retention	49461508	49460996	.	-	.	gene_id "intron_retention.383"; transcript_id "intron_retention.383"; gene_name "CUFF.1975"; flanks "49461508-,49460996^"; structure "0,1^2-"; splice_chain ",49461508^49460996-"; psi "0.809200";
chr14	juncbase	jcn_only_AD	58894575	58896081	.	-	.	gene_id "jcn_only_AD.394"; transcript_id "jcn_only_AD.394"; gene_name "CUFF.1975"; flanks "58894575-,58896081-"; structure "1^,2^"; splice_chain "58894575^,58895181^"; psi "0.978145";
chr14	juncbase	jcn_only_AD	58894531	58896081	.	-	.	gene_id "jcn_only_AD.395"; transcript_id "jcn_only_AD.395"; gene_name "CUFF.1975"; flanks "58894531-,58896081-"; structure "1^,2^"; splice_chain "58894531^,58895181^"; psi "0.986048";
chr7	juncbase	jcn_only_AD	75040009	75040938	.	-	.	gene_id "jcn_only_AD.396"; transcript_id "jcn_only_AD.396"; gene_name "CUFF.1975"; flanks "75040009-,75040938-"; structure "1^,2^"; splice_chain "75040009^,75040857^"; psi "0.375000";
chr9	juncbase	jcn_only_AD	116795008	116798580	.	-	.	gene_id "jcn_only_AD.397"; transcript_id "jcn_only_AD.397"; gene_name "CUFF.1975"; flanks "116795008-,116798580-"; structure "1^,2^"; splice_chain "116795008^,116797515^"; psi "0.478300";
chr15	juncbase	jcn_only_AD	57384089	57458600	.	-	.	gene_id "jcn_only_AD.398"; transcript_id "jcn_only_AD.398"; gene_name "CUFF.1975"; flanks "57384089-,57458600-"; structure "1^,2^"; splice_chain "57384089^,57426698^"; psi "0.879949";
chr15	juncbase	jcn_only_AD	57401515	57458600	.	-	.	gene_id "jcn_only_AD.399"; transcript_id "jcn_only_AD.399"; gene_name "CUFF.1975"; flanks "57401515-,57458600-"; structure "1^,2^"; splice_chain "57401515^,57426698^"; psi "0.908915";
chr15	juncbase	jcn_only_AD	57422170	57458600	.	-	.	gene_id "jcn_only_AD.400"; transcript_id "jcn_only_AD.400"; gene_name "CUFF.1975"; flanks "57422170-,57458600-"; structure "1^,2^"; splice_chain "57422170^,57426698^"; psi "0.988773";
chr11	juncbase	intron_retention	124078395	124078522	.	-	.	gene_id "intron_retention.384"; transcript_id "intron_retention.384"; gene_name "CUFF.1975"; flanks "124078395-,124078522^"; structure "0,1^2-"; splice_chain ",124078395^124078522-"; psi "0.704200";
chr12	juncbase	intron_retention	56578814	56578720	.	-	.	gene_id "intron_retention.385"; transcript_id "intron_retention.385"; gene_name "CUFF.1975"; flanks "56578814-,56578720^"; structure "0,1^2-"; splice_chain ",56578814^56578720-"; psi "0.137300";
chr11	juncbase	intron_retention	5699434	5687311	.	-	.	gene_id "intron_retention.386"; transcript_id "intron_retention.386"; gene_name "CUFF.1975"; flanks "5699434-,5687311^"; structure "0,1^2-"; splice_chain ",5699434^5687311-"; psi "0.150900";
chr15	juncbase	cassette	99548658	99514387	.	-	.	gene_id "cassette.293"; transcript_id "cassette.293"; gene_name "CUFF.1975"; flanks "99548658^,99514387-"; structure "0,1-2^"; splice_chain ",99544508-99544416^"; psi "0.898000";
chr9	juncbase	jcn_only_AA	131008782	131009654	.	-	.	gene_id "jcn_only_AA.324"; transcript_id "jcn_only_AA.324"; gene_name "CUFF.1975"; flanks "131008782^,131009654^"; structure "1-,2-"; splice_chain "131009216-,131009654-"; psi "0.864000";
chr3	juncbase	cassette	120394639	120389379	.	-	.	gene_id "cassette.294"; transcript_id "cassette.294"; gene_name "CUFF.1975"; flanks "120394639^,120389379-"; structure "0,1-2^"; splice_chain ",120393836-120393748^"; psi "0.884300";
chr7	juncbase	cassette	86541388	86539317	.	-	.	gene_id "cassette.295"; transcript_id "cassette.295"; gene_name "CUFF.1975"; flanks "86541388^,86539317-"; structure "0,1-2^"; splice_chain ",86541011-86540938^"; psi "0.586600";
chr22	juncbase	intron_retention	30742301	30741179	.	-	.	gene_id "intron_retention.387"; transcript_id "intron_retention.387"; gene_name "CUFF.1975"; flanks "30742301-,30741179^"; structure "0,1^2-"; splice_chain ",30742301^30741179-"; psi "0.584400";
chr7	juncbase	jcn_only_AA	156516806	156476857	.	-	.	gene_id "jcn_only_AA.325"; transcript_id "jcn_only_AA.325"; gene_name "CUFF.1975"; flanks "156516806^,156476857^"; structure "1-,2-"; splice_chain "156480885-,156476857-"; psi "0.331400";
chr2	juncbase	jcn_only_AD	242437031	242435949	.	-	.	gene_id "jcn_only_AD.401"; transcript_id "jcn_only_AD.401"; gene_name "CUFF.1975"; flanks "242437031-,242435949-"; structure "1^,2^"; splice_chain "242437031^,242436715^"; psi "0.980871";
chr3	juncbase	jcn_only_AD	71803795	71777774	.	-	.	gene_id "jcn_only_AD.402"; transcript_id "jcn_only_AD.402"; gene_name "CUFF.1975"; flanks "71803795-,71777774-"; structure "1^,2^"; splice_chain "71803795^,71802614^"; psi "0.645161";
chr3	juncbase	jcn_only_AD	71803366	71777774	.	-	.	gene_id "jcn_only_AD.403"; transcript_id "jcn_only_AD.403"; gene_name "CUFF.1975"; flanks "71803366-,71777774-"; structure "1^,2^"; splice_chain "71803366^,71802614^"; psi "0.521739";
chr1	juncbase	jcn_only_AD	155180418	155181918	.	-	.	gene_id "jcn_only_AD.404"; transcript_id "jcn_only_AD.404"; gene_name "CUFF.1975"; flanks "155180418-,155181918-"; structure "1^,2^"; splice_chain "155180418^,155181337^"; psi "0.902700";
chr4	juncbase	jcn_only_AD	186185652	186188123	.	-	.	gene_id "jcn_only_AD.405"; transcript_id "jcn_only_AD.405"; gene_name "CUFF.1975"; flanks "186185652-,186188123-"; structure "1^,2^"; splice_chain "186185652^,186185764^"; psi "0.710500";
chr3	juncbase	jcn_only_AA	107591815	107576049	.	-	.	gene_id "jcn_only_AA.326"; transcript_id "jcn_only_AA.326"; gene_name "CUFF.1975"; flanks "107591815^,107576049^"; structure "1-,2-"; splice_chain "107586272-,107576049-"; psi "0.694282";
chr2	juncbase	cassette	4021135	4008146	.	-	.	gene_id "cassette.296"; transcript_id "cassette.296"; gene_name "CUFF.1975"; flanks "4021135^,4008146-"; structure "0,1-2^"; splice_chain ",4009393-4009360^"; psi "0.955000";
chr7	juncbase	jcn_only_AD	37025528	36934622	.	-	.	gene_id "jcn_only_AD.406"; transcript_id "jcn_only_AD.406"; gene_name "CUFF.1975"; flanks "37025528-,36934622-"; structure "1^,2^"; splice_chain "37025528^,37024520^"; psi "0.502874";
chr7	juncbase	jcn_only_AD	37052904	36934622	.	-	.	gene_id "jcn_only_AD.407"; transcript_id "jcn_only_AD.407"; gene_name "CUFF.1975"; flanks "37052904-,36934622-"; structure "1^,2^"; splice_chain "37052904^,37024520^"; psi "0.764364";
chr17	juncbase	jcn_only_AD	66287227	66279264	.	-	.	gene_id "jcn_only_AD.408"; transcript_id "jcn_only_AD.408"; gene_name "CUFF.1975"; flanks "66287227-,66279264-"; structure "1^,2^"; splice_chain "66287227^,66281686^"; psi "0.259300";
chr15	juncbase	jcn_only_AA	75809600	75801368	.	-	.	gene_id "jcn_only_AA.327"; transcript_id "jcn_only_AA.327"; gene_name "CUFF.1975"; flanks "75809600^,75801368^"; structure "1-,2-"; splice_chain "75805779-,75801368-"; psi "0.230800";
chr18	juncbase	jcn_only_AA	67623991	67563281	.	-	.	gene_id "jcn_only_AA.328"; transcript_id "jcn_only_AA.328"; gene_name "CUFF.1975"; flanks "67623991^,67563281^"; structure "1-,2-"; splice_chain "67614669-,67563281-"; psi "0.813873";
chr17	juncbase	jcn_only_AA	61904874	61905211	.	-	.	gene_id "jcn_only_AA.329"; transcript_id "jcn_only_AA.329"; gene_name "CUFF.1975"; flanks "61904874^,61905211^"; structure "1-,2-"; splice_chain "61905189-,61905211-"; psi "0.787601";
chr17	juncbase	jcn_only_AA	61904874	61905479	.	-	.	gene_id "jcn_only_AA.330"; transcript_id "jcn_only_AA.330"; gene_name "CUFF.1975"; flanks "61904874^,61905479^"; structure "1-,2-"; splice_chain "61905189-,61905479-"; psi "0.537577";
chr17	juncbase	jcn_only_AA	61904874	61905498	.	-	.	gene_id "jcn_only_AA.331"; transcript_id "jcn_only_AA.331"; gene_name "CUFF.1975"; flanks "61904874^,61905498^"; structure "1-,2-"; splice_chain "61905189-,61905498-"; psi "0.905069";
chr11	juncbase	intron_retention	3405514	3418347	.	-	.	gene_id "intron_retention.388"; transcript_id "intron_retention.388"; gene_name "CUFF.1975"; flanks "3405514-,3418347^"; structure "0,1^2-"; splice_chain ",3405514^3418347-"; psi "0.139300";
chr15	juncbase	cassette	40545490	40556000	.	-	.	gene_id "cassette.297"; transcript_id "cassette.297"; gene_name "CUFF.1975"; flanks "40545490^,40556000-"; structure "0,1-2^"; splice_chain ",40549044-40549287^"; psi "0.759100";
chr3	juncbase	jcn_only_AD	156266694	156262228	.	-	.	gene_id "jcn_only_AD.409"; transcript_id "jcn_only_AD.409"; gene_name "CUFF.1975"; flanks "156266694-,156262228-"; structure "1^,2^"; splice_chain "156266694^,156266655^"; psi "0.963415";
chr20	juncbase	jcn_only_AD	34252801	34246936	.	-	.	gene_id "jcn_only_AD.410"; transcript_id "jcn_only_AD.410"; gene_name "CUFF.1975"; flanks "34252801-,34246936-"; structure "1^,2^"; splice_chain "34252801^,34252724^"; psi "0.474600";
chrX	juncbase	intron_retention	53658519	53658434	.	-	.	gene_id "intron_retention.389"; transcript_id "intron_retention.389"; gene_name "CUFF.1975"; flanks "53658519-,53658434^"; structure "0,1^2-"; splice_chain ",53658519^53658434-"; psi "0.300000";
chr14	juncbase	intron_retention	50241396	50244557	.	-	.	gene_id "intron_retention.390"; transcript_id "intron_retention.390"; gene_name "CUFF.1975"; flanks "50241396-,50244557^"; structure "0,1^2-"; splice_chain ",50241396^50244557-"; psi "0.221200";
chr2	juncbase	intron_retention	79363916	79363202	.	-	.	gene_id "intron_retention.391"; transcript_id "intron_retention.391"; gene_name "CUFF.1975"; flanks "79363916-,79363202^"; structure "0,1^2-"; splice_chain ",79363916^79363202-"; psi "0.384900";
chr3	juncbase	intron_retention	119205779	119207776	.	-	.	gene_id "intron_retention.392"; transcript_id "intron_retention.392"; gene_name "CUFF.1975"; flanks "119205779-,119207776^"; structure "0,1^2-"; splice_chain ",119205779^119207776-"; psi "0.722200";
chr14	juncbase	jcn_only_AA	75151157	75143455	.	-	.	gene_id "jcn_only_AA.332"; transcript_id "jcn_only_AA.332"; gene_name "CUFF.1975"; flanks "75151157^,75143455^"; structure "1-,2-"; splice_chain "75150236-,75143455-"; psi "0.737400";
chr8	juncbase	cassette	144375235	144377910	.	-	.	gene_id "cassette.298"; transcript_id "cassette.298"; gene_name "CUFF.1975"; flanks "144375235^,144377910-"; structure "0,1-2^"; splice_chain ",144377549-144377640^"; psi "0.161600";
chr17	juncbase	cassette	46988242	46993438	.	-	.	gene_id "cassette.299"; transcript_id "cassette.299"; gene_name "CUFF.1975"; flanks "46988242^,46993438-"; structure "0,1-2^"; splice_chain ",46990196-46990327^"; psi "0.577900";
chr5	juncbase	jcn_only_AD	36705823	36703066	.	-	.	gene_id "jcn_only_AD.411"; transcript_id "jcn_only_AD.411"; gene_name "CUFF.1975"; flanks "36705823-,36703066-"; structure "1^,2^"; splice_chain "36705823^,36705782^"; psi "0.054900";
chr15	juncbase	jcn_only_AD	91290720	91292597	.	-	.	gene_id "jcn_only_AD.412"; transcript_id "jcn_only_AD.412"; gene_name "CUFF.1975"; flanks "91290720-,91292597-"; structure "1^,2^"; splice_chain "91290720^,91290891^"; psi "0.312500";
chr4	juncbase	jcn_only_AA	124750342	124846339	.	-	.	gene_id "jcn_only_AA.333"; transcript_id "jcn_only_AA.333"; gene_name "CUFF.1975"; flanks "124750342^,124846339^"; structure "1-,2-"; splice_chain "124784730-,124846339-"; psi "0.905700";
chr9	juncbase	jcn_only_AD	130941523	130941183	.	-	.	gene_id "jcn_only_AD.413"; transcript_id "jcn_only_AD.413"; gene_name "CUFF.1975"; flanks "130941523-,130941183-"; structure "1^,2^"; splice_chain "130941523^,130941268^"; psi "0.262148";
chr9	juncbase	jcn_only_AD	130941352	130941183	.	-	.	gene_id "jcn_only_AD.414"; transcript_id "jcn_only_AD.414"; gene_name "CUFF.1975"; flanks "130941352-,130941183-"; structure "1^,2^"; splice_chain "130941352^,130941268^"; psi "0.269250";
chr2	juncbase	jcn_only_AD	242577139	242590425	.	-	.	gene_id "jcn_only_AD.415"; transcript_id "jcn_only_AD.415"; gene_name "CUFF.1975"; flanks "242577139-,242590425-"; structure "1^,2^"; splice_chain "242577139^,242577175^"; psi "0.889085";
chr19	juncbase	intron_retention	52909896	52917457	.	-	.	gene_id "intron_retention.393"; transcript_id "intron_retention.393"; gene_name "CUFF.1975"; flanks "52909896-,52917457^"; structure "0,1^2-"; splice_chain ",52909896^52917457-"; psi "0.740700";
chrX	juncbase	jcn_only_AD	53654361	53652219	.	-	.	gene_id "jcn_only_AD.416"; transcript_id "jcn_only_AD.416"; gene_name "CUFF.1975"; flanks "53654361-,53652219-"; structure "1^,2^"; splice_chain "53654361^,53652747^"; psi "0.434800";
chr2	juncbase	cassette	169659183	169681144	.	-	.	gene_id "cassette.300"; transcript_id "cassette.300"; gene_name "CUFF.1975"; flanks "169659183^,169681144-"; structure "0,1-2^"; splice_chain ",169668077-169668162^"; psi "0.365500";
chr19	juncbase	cassette	17611441	17615264	.	-	.	gene_id "cassette.301"; transcript_id "cassette.301"; gene_name "CUFF.1975"; flanks "17611441^,17615264-"; structure "0,1-2^"; splice_chain ",17611521-17611685^"; psi "0.857100";
chr16	juncbase	intron_retention	57513773	57513597	.	-	.	gene_id "intron_retention.394"; transcript_id "intron_retention.394"; gene_name "CUFF.1975"; flanks "57513773-,57513597^"; structure "0,1^2-"; splice_chain ",57513773^57513597-"; psi "0.384000";
chr22	juncbase	jcn_only_AA	30752719	30735168	.	-	.	gene_id "jcn_only_AA.334"; transcript_id "jcn_only_AA.334"; gene_name "CUFF.1975"; flanks "30752719^,30735168^"; structure "1-,2-"; splice_chain "30749061-,30735168-"; psi "0.051100";
chr4	juncbase	jcn_only_AA	20570627	20591267	.	-	.	gene_id "jcn_only_AA.335"; transcript_id "jcn_only_AA.335"; gene_name "CUFF.1975"; flanks "20570627^,20591267^"; structure "1-,2-"; splice_chain "20574857-,20591267-"; psi "0.500000";
chr1	juncbase	cassette	161043510	161042675	.	-	.	gene_id "cassette.302"; transcript_id "cassette.302"; gene_name "CUFF.1975"; flanks "161043510^,161042675-"; structure "0,1-2^"; splice_chain ",161043089-161043015^"; psi "0.041700";
chr8	juncbase	jcn_only_AA	56657620	56652777	.	-	.	gene_id "jcn_only_AA.336"; transcript_id "jcn_only_AA.336"; gene_name "CUFF.1975"; flanks "56657620^,56652777^"; structure "1-,2-"; splice_chain "56656179-,56652777-"; psi "0.346900";
chr22	juncbase	intron_retention	21830291	21829589	.	-	.	gene_id "intron_retention.395"; transcript_id "intron_retention.395"; gene_name "CUFF.1975"; flanks "21830291-,21829589^"; structure "0,1^2-"; splice_chain ",21830291^21829589-"; psi "0.714300";
chr16	juncbase	jcn_only_AA	4445290	4412132	.	-	.	gene_id "jcn_only_AA.337"; transcript_id "jcn_only_AA.337"; gene_name "CUFF.1975"; flanks "4445290^,4412132^"; structure "1-,2-"; splice_chain "4438632-,4412132-"; psi "0.054500";
chr12	juncbase	jcn_only_AD	21011505	21174395	.	-	.	gene_id "jcn_only_AD.417"; transcript_id "jcn_only_AD.417"; gene_name "CUFF.1975"; flanks "21011505-,21174395-"; structure "1^,2^"; splice_chain "21011505^,21172314^"; psi "0.782600";
chr12	juncbase	jcn_only_AA	120135464	120128256	.	-	.	gene_id "jcn_only_AA.338"; transcript_id "jcn_only_AA.338"; gene_name "CUFF.1975"; flanks "120135464^,120128256^"; structure "1-,2-"; splice_chain "120128259-,120128256-"; psi "0.376900";
chr3	juncbase	jcn_only_AA	122864439	122864965	.	-	.	gene_id "jcn_only_AA.339"; transcript_id "jcn_only_AA.339"; gene_name "CUFF.1975"; flanks "122864439^,122864965^"; structure "1-,2-"; splice_chain "122864946-,122864965-"; psi "0.875200";
chr17	juncbase	cassette	77005746	76996352	.	-	.	gene_id "cassette.303"; transcript_id "cassette.303"; gene_name "CUFF.1975"; flanks "77005746^,76996352-"; structure "0,1-2^"; splice_chain ",77001563-77001454^"; psi "0.208700";
chr17	juncbase	cassette	77005746	76994045	.	-	.	gene_id "cassette.304"; transcript_id "cassette.304"; gene_name "CUFF.1975"; flanks "77005746^,76994045-"; structure "0,1-2^"; splice_chain ",77001563-77001454^"; psi "0.208700";
chr11	juncbase	intron_retention	828259	828575	.	-	.	gene_id "intron_retention.396"; transcript_id "intron_retention.396"; gene_name "CUFF.1975"; flanks "828259-,828575^"; structure "0,1^2-"; splice_chain ",828259^828575-"; psi "0.921200";
chr5	juncbase	intron_retention	149785822	149781567	.	-	.	gene_id "intron_retention.397"; transcript_id "intron_retention.397"; gene_name "CUFF.1975"; flanks "149785822-,149781567^"; structure "0,1^2-"; splice_chain ",149785822^149781567-"; psi "0.354900";
chr15	juncbase	intron_retention	64445538	64445851	.	-	.	gene_id "intron_retention.398"; transcript_id "intron_retention.398"; gene_name "CUFF.1975"; flanks "64445538-,64445851^"; structure "0,1^2-"; splice_chain ",64445538^64445851-"; psi "0.162500";
chr3	juncbase	intron_retention	33438537	33438370	.	-	.	gene_id "intron_retention.399"; transcript_id "intron_retention.399"; gene_name "CUFF.1975"; flanks "33438537-,33438370^"; structure "0,1^2-"; splice_chain ",33438537^33438370-"; psi "0.496400";
chr19	juncbase	intron_retention	54657577	54657681	.	-	.	gene_id "intron_retention.400"; transcript_id "intron_retention.400"; gene_name "CUFF.1975"; flanks "54657577-,54657681^"; structure "0,1^2-"; splice_chain ",54657577^54657681-"; psi "0.391300";
chr12	juncbase	jcn_only_AD	1742071	1754960	.	-	.	gene_id "jcn_only_AD.418"; transcript_id "jcn_only_AD.418"; gene_name "CUFF.1975"; flanks "1742071-,1754960-"; structure "1^,2^"; splice_chain "1742071^,1749142^"; psi "0.448603";
chr17	juncbase	cassette	15539350	15535028	.	-	.	gene_id "cassette.305"; transcript_id "cassette.305"; gene_name "CUFF.1975"; flanks "15539350^,15535028-"; structure "0,1-2^"; splice_chain ",15535988-15535823^"; psi "0.739700";
chr13	juncbase	cassette	31192193	31195901	.	-	.	gene_id "cassette.306"; transcript_id "cassette.306"; gene_name "CUFF.1975"; flanks "31192193^,31195901-"; structure "0,1-2^"; splice_chain ",31195210-31195376^"; psi "0.222200";
chr7	juncbase	jcn_only_AD	22232985	22206766	.	-	.	gene_id "jcn_only_AD.419"; transcript_id "jcn_only_AD.419"; gene_name "CUFF.1975"; flanks "22232985-,22206766-"; structure "1^,2^"; splice_chain "22232985^,22231147^"; psi "0.500000";
chr2	juncbase	jcn_only_AD	25186274	25180843	.	-	.	gene_id "jcn_only_AD.420"; transcript_id "jcn_only_AD.420"; gene_name "CUFF.1975"; flanks "25186274-,25180843-"; structure "1^,2^"; splice_chain "25186274^,25181416^"; psi "0.836000";
chr22	juncbase	intron_retention	29694885	29695185	.	-	.	gene_id "intron_retention.401"; transcript_id "intron_retention.401"; gene_name "CUFF.1975"; flanks "29694885-,29695185^"; structure "0,1^2-"; splice_chain ",29694885^29695185-"; psi "0.325900";
chr16	juncbase	jcn_only_AD	3115495	3115782	.	-	.	gene_id "jcn_only_AD.421"; transcript_id "jcn_only_AD.421"; gene_name "CUFF.1975"; flanks "3115495-,3115782-"; structure "1^,2^"; splice_chain "3115495^,3115688^"; psi "0.961003";
chr11	juncbase	cassette	118920268	118919598	.	-	.	gene_id "cassette.307"; transcript_id "cassette.307"; gene_name "CUFF.1975"; flanks "118920268^,118919598-"; structure "0,1-2^"; splice_chain ",118919915-118919730^"; psi "0.412500";
chr10	juncbase	jcn_only_AA	27149676	27112234	.	-	.	gene_id "jcn_only_AA.340"; transcript_id "jcn_only_AA.340"; gene_name "CUFF.1975"; flanks "27149676^,27112234^"; structure "1-,2-"; splice_chain "27128712-,27112234-"; psi "0.983600";
chr8	juncbase	jcn_only_AD	81083660	80976828	.	-	.	gene_id "jcn_only_AD.422"; transcript_id "jcn_only_AD.422"; gene_name "CUFF.1975"; flanks "81083660-,80976828-"; structure "1^,2^"; splice_chain "81083660^,81032050^"; psi "0.389013";
chr8	juncbase	jcn_only_AD	81070672	80976828	.	-	.	gene_id "jcn_only_AD.423"; transcript_id "jcn_only_AD.423"; gene_name "CUFF.1975"; flanks "81070672-,80976828-"; structure "1^,2^"; splice_chain "81070672^,81032050^"; psi "0.342978";
chr8	juncbase	jcn_only_AD	81083442	80976828	.	-	.	gene_id "jcn_only_AD.424"; transcript_id "jcn_only_AD.424"; gene_name "CUFF.1975"; flanks "81083442-,80976828-"; structure "1^,2^"; splice_chain "81083442^,81032050^"; psi "0.288512";
chr8	juncbase	jcn_only_AD	81083256	80976828	.	-	.	gene_id "jcn_only_AD.425"; transcript_id "jcn_only_AD.425"; gene_name "CUFF.1975"; flanks "81083256-,80976828-"; structure "1^,2^"; splice_chain "81083256^,81032050^"; psi "0.091667";
chr8	juncbase	jcn_only_AD	81130704	80976828	.	-	.	gene_id "jcn_only_AD.426"; transcript_id "jcn_only_AD.426"; gene_name "CUFF.1975"; flanks "81130704-,80976828-"; structure "1^,2^"; splice_chain "81130704^,81032050^"; psi "0.288512";
chr4	juncbase	cassette	152095822	152080504	.	-	.	gene_id "cassette.308"; transcript_id "cassette.308"; gene_name "CUFF.1975"; flanks "152095822^,152080504-"; structure "0,1-2^"; splice_chain ",152086848-152086741^"; psi "0.816900";
chr17	juncbase	intron_retention	66508689	66511128	.	-	.	gene_id "intron_retention.402"; transcript_id "intron_retention.402"; gene_name "CUFF.1975"; flanks "66508689-,66511128^"; structure "0,1^2-"; splice_chain ",66508689^66511128-"; psi "0.847800";
chr16	juncbase	jcn_only_AD	21737979	21739562	.	-	.	gene_id "jcn_only_AD.427"; transcript_id "jcn_only_AD.427"; gene_name "CUFF.1975"; flanks "21737979-,21739562-"; structure "1^,2^"; splice_chain "21737979^,21738480^"; psi "0.985500";
chr22	juncbase	jcn_only_AD	29695270	29695589	.	-	.	gene_id "jcn_only_AD.428"; transcript_id "jcn_only_AD.428"; gene_name "CUFF.1975"; flanks "29695270-,29695589-"; structure "1^,2^"; splice_chain "29695270^,29695321^"; psi "0.450100";
chr9	juncbase	intron_retention	131486231	131484853	.	-	.	gene_id "intron_retention.403"; transcript_id "intron_retention.403"; gene_name "CUFF.1975"; flanks "131486231-,131484853^"; structure "0,1^2-"; splice_chain ",131486231^131484853-"; psi "0.775400";
chr19	juncbase	jcn_only_AD	4306038	4306195	.	-	.	gene_id "jcn_only_AD.429"; transcript_id "jcn_only_AD.429"; gene_name "CUFF.1975"; flanks "4306038-,4306195-"; structure "1^,2^"; splice_chain "4306038^,4306066^"; psi "0.951600";
chr12	juncbase	intron_retention	52404925	52407471	.	-	.	gene_id "intron_retention.404"; transcript_id "intron_retention.404"; gene_name "CUFF.1975"; flanks "52404925-,52407471^"; structure "0,1^2-"; splice_chain ",52404925^52407471-"; psi "0.235200";
chr2	juncbase	cassette	38177738	38201183	.	-	.	gene_id "cassette.309"; transcript_id "cassette.309"; gene_name "CUFF.1975"; flanks "38177738^,38201183-"; structure "0,1-2^"; splice_chain ",38178376-38179344^"; psi "0.422000";
chr7	juncbase	intron_retention	150814864	150815297	.	-	.	gene_id "intron_retention.405"; transcript_id "intron_retention.405"; gene_name "CUFF.1975"; flanks "150814864-,150815297^"; structure "0,1^2-"; splice_chain ",150814864^150815297-"; psi "0.193800";
chr19	juncbase	jcn_only_AA	51526348	51525920	.	-	.	gene_id "jcn_only_AA.341"; transcript_id "jcn_only_AA.341"; gene_name "CUFF.1975"; flanks "51526348^,51525920^"; structure "1-,2-"; splice_chain "51525953-,51525920-"; psi "0.184900";
chr15	juncbase	cassette	67752030	67713836	.	-	.	gene_id "cassette.310"; transcript_id "cassette.310"; gene_name "CUFF.1975"; flanks "67752030^,67713836-"; structure "0,1-2^"; splice_chain ",67722738-67722659^"; psi "0.989000";
chr3	juncbase	intron_retention	122863676	122864369	.	-	.	gene_id "intron_retention.406"; transcript_id "intron_retention.406"; gene_name "CUFF.1975"; flanks "122863676-,122864369^"; structure "0,1^2-"; splice_chain ",122863676^122864369-"; psi "0.021900";
chr7	juncbase	jcn_only_AA	128865280	129019482	.	-	.	gene_id "jcn_only_AA.342"; transcript_id "jcn_only_AA.342"; gene_name "CUFF.1975"; flanks "128865280^,129019482^"; structure "1-,2-"; splice_chain "129019479-,129019482-"; psi "0.600000";
chr5	juncbase	cassette	56531859	56542127	.	-	.	gene_id "cassette.311"; transcript_id "cassette.311"; gene_name "CUFF.1975"; flanks "56531859^,56542127-"; structure "0,1-2^"; splice_chain ",56532940-56532999^"; psi "0.316200";
chr19	juncbase	jcn_only_AD	56348076	56344281	.	-	.	gene_id "jcn_only_AD.430"; transcript_id "jcn_only_AD.430"; gene_name "CUFF.1975"; flanks "56348076-,56344281-"; structure "1^,2^"; splice_chain "56348076^,56347702^"; psi "0.787200";
chr19	juncbase	intron_retention	52909896	52918377	.	-	.	gene_id "intron_retention.407"; transcript_id "intron_retention.407"; gene_name "CUFF.1975"; flanks "52909896-,52918377^"; structure "0,1^2-"; splice_chain ",52909896^52918377-"; psi "0.770800";
chr4	juncbase	jcn_only_AD	120434075	120449895	.	-	.	gene_id "jcn_only_AD.431"; transcript_id "jcn_only_AD.431"; gene_name "CUFF.1975"; flanks "120434075-,120449895-"; structure "1^,2^"; splice_chain "120434075^,120434125^"; psi "0.897200";
chr5	juncbase	intron_retention	64887275	64886129	.	-	.	gene_id "intron_retention.408"; transcript_id "intron_retention.408"; gene_name "CUFF.1975"; flanks "64887275-,64886129^"; structure "0,1^2-"; splice_chain ",64887275^64886129-"; psi "0.546900";
chr2	juncbase	intron_retention	61752627	61752468	.	-	.	gene_id "intron_retention.409"; transcript_id "intron_retention.409"; gene_name "CUFF.1975"; flanks "61752627-,61752468^"; structure "0,1^2-"; splice_chain ",61752627^61752468-"; psi "0.992200";
chr2	juncbase	jcn_only_AD	175869934	175816930	.	-	.	gene_id "jcn_only_AD.432"; transcript_id "jcn_only_AD.432"; gene_name "CUFF.1975"; flanks "175869934-,175816930-"; structure "1^,2^"; splice_chain "175869934^,175869622^"; psi "0.024700";
chr19	juncbase	intron_retention	44764155	44768467	.	-	.	gene_id "intron_retention.410"; transcript_id "intron_retention.410"; gene_name "CUFF.1975"; flanks "44764155-,44768467^"; structure "0,1^2-"; splice_chain ",44764155^44768467-"; psi "0.286600";
chr2	juncbase	jcn_only_AD	288553	287892	.	-	.	gene_id "jcn_only_AD.433"; transcript_id "jcn_only_AD.433"; gene_name "CUFF.1975"; flanks "288553-,287892-"; structure "1^,2^"; splice_chain "288553^,288013^"; psi "0.244200";
chr1	juncbase	intron_retention	26230132	26228173	.	-	.	gene_id "intron_retention.411"; transcript_id "intron_retention.411"; gene_name "CUFF.1975"; flanks "26230132-,26228173^"; structure "0,1^2-"; splice_chain ",26230132^26228173-"; psi "0.304200";
chr9	juncbase	cassette	35400440	35403164	.	-	.	gene_id "cassette.312"; transcript_id "cassette.312"; gene_name "CUFF.1975"; flanks "35400440^,35403164-"; structure "0,1-2^"; splice_chain ",35401948-35402004^"; psi "0.800000";
chr6	juncbase	intron_retention	2988943	2989762	.	-	.	gene_id "intron_retention.412"; transcript_id "intron_retention.412"; gene_name "CUFF.1975"; flanks "2988943-,2989762^"; structure "0,1^2-"; splice_chain ",2988943^2989762-"; psi "0.129600";
chr2	juncbase	jcn_only_AA	1243548	1251099	.	-	.	gene_id "jcn_only_AA.343"; transcript_id "jcn_only_AA.343"; gene_name "CUFF.1975"; flanks "1243548^,1251099^"; structure "1-,2-"; splice_chain "1246510-,1251099-"; psi "0.883500";
chr19	juncbase	jcn_only_AA	17581516	17598269	.	-	.	gene_id "jcn_only_AA.344"; transcript_id "jcn_only_AA.344"; gene_name "CUFF.1975"; flanks "17581516^,17598269^"; structure "1-,2-"; splice_chain "17597372-,17598269-"; psi "0.478468";
chr11	juncbase	cassette	63672515	63676349	.	-	.	gene_id "cassette.313"; transcript_id "cassette.313"; gene_name "CUFF.1975"; flanks "63672515^,63676349-"; structure "0,1-2^"; splice_chain ",63675732-63675776^"; psi "0.832000";
chr11	juncbase	cassette	63673586	63676349	.	-	.	gene_id "cassette.314"; transcript_id "cassette.314"; gene_name "CUFF.1975"; flanks "63673586^,63676349-"; structure "0,1-2^"; splice_chain ",63675732-63675776^"; psi "0.832000";
chr19	juncbase	jcn_only_AA	32851524	32873373	.	-	.	gene_id "jcn_only_AA.345"; transcript_id "jcn_only_AA.345"; gene_name "CUFF.1975"; flanks "32851524^,32873373^"; structure "1-,2-"; splice_chain "32871515-,32873373-"; psi "0.774200";
chr6	juncbase	jcn_only_AA	90337415	90338831	.	-	.	gene_id "jcn_only_AA.346"; transcript_id "jcn_only_AA.346"; gene_name "CUFF.1975"; flanks "90337415^,90338831^"; structure "1-,2-"; splice_chain "90337966-,90338831-"; psi "0.952800";
chr2	juncbase	cassette	171356318	171371431	.	-	.	gene_id "cassette.315"; transcript_id "cassette.315"; gene_name "CUFF.1975"; flanks "171356318^,171371431-"; structure "0,1-2^"; splice_chain ",171358295-171358375^"; psi "0.779700";
chr18	juncbase	jcn_only_AD	77875467	77890986	.	-	.	gene_id "jcn_only_AD.434"; transcript_id "jcn_only_AD.434"; gene_name "CUFF.1975"; flanks "77875467-,77890986-"; structure "1^,2^"; splice_chain "77875467^,77875533^"; psi "0.151400";
chr16	juncbase	intron_retention	89799820	89799890	.	-	.	gene_id "intron_retention.413"; transcript_id "intron_retention.413"; gene_name "CUFF.1975"; flanks "89799820-,89799890^"; structure "0,1^2-"; splice_chain ",89799820^89799890-"; psi "0.065300";
chr12	juncbase	jcn_only_AD	48375890	48375612	.	-	.	gene_id "jcn_only_AD.435"; transcript_id "jcn_only_AD.435"; gene_name "CUFF.1975"; flanks "48375890-,48375612-"; structure "1^,2^"; splice_chain "48375890^,48375728^"; psi "0.979700";
chr2	juncbase	intron_retention	96195103	96195819	.	-	.	gene_id "intron_retention.414"; transcript_id "intron_retention.414"; gene_name "CUFF.1975"; flanks "96195103-,96195819^"; structure "0,1^2-"; splice_chain ",96195103^96195819-"; psi "0.454500";
chr10	juncbase	jcn_only_AA	80825504	80810174	.	-	.	gene_id "jcn_only_AA.347"; transcript_id "jcn_only_AA.347"; gene_name "CUFF.1975"; flanks "80825504^,80810174^"; structure "1-,2-"; splice_chain "80814485-,80810174-"; psi "0.972100";
chr8	juncbase	jcn_only_AD	74884856	74888065	.	-	.	gene_id "jcn_only_AD.436"; transcript_id "jcn_only_AD.436"; gene_name "CUFF.1975"; flanks "74884856-,74888065-"; structure "1^,2^"; splice_chain "74884856^,74885228^"; psi "0.954100";
chr16	juncbase	jcn_only_AA	67223534	67223083	.	-	.	gene_id "jcn_only_AA.348"; transcript_id "jcn_only_AA.348"; gene_name "CUFF.1975"; flanks "67223534^,67223083^"; structure "1-,2-"; splice_chain "67223098-,67223083-"; psi "0.974200";
chr19	juncbase	intron_retention	50306262	50306364	.	-	.	gene_id "intron_retention.415"; transcript_id "intron_retention.415"; gene_name "CUFF.1975"; flanks "50306262-,50306364^"; structure "0,1^2-"; splice_chain ",50306262^50306364-"; psi "0.020800";
chr4	juncbase	intron_retention	99407889	99405592	.	-	.	gene_id "intron_retention.416"; transcript_id "intron_retention.416"; gene_name "CUFF.1975"; flanks "99407889-,99405592^"; structure "0,1^2-"; splice_chain ",99407889^99405592-"; psi "0.634900";
chr17	juncbase	intron_retention	1939947	1940129	.	-	.	gene_id "intron_retention.417"; transcript_id "intron_retention.417"; gene_name "CUFF.1975"; flanks "1939947-,1940129^"; structure "0,1^2-"; splice_chain ",1939947^1940129-"; psi "0.829300";
chr15	juncbase	jcn_only_AA	57555472	57565231	.	-	.	gene_id "jcn_only_AA.349"; transcript_id "jcn_only_AA.349"; gene_name "CUFF.1975"; flanks "57555472^,57565231^"; structure "1-,2-"; splice_chain "57565228-,57565231-"; psi "0.055100";
chr17	juncbase	jcn_only_AA	79994260	79994184	.	-	.	gene_id "jcn_only_AA.350"; transcript_id "jcn_only_AA.350"; gene_name "CUFF.1975"; flanks "79994260^,79994184^"; structure "1-,2-"; splice_chain "79994198-,79994184-"; psi "0.958100";
chr18	juncbase	jcn_only_AD	47340102	47329223	.	-	.	gene_id "jcn_only_AD.437"; transcript_id "jcn_only_AD.437"; gene_name "CUFF.1975"; flanks "47340102-,47329223-"; structure "1^,2^"; splice_chain "47340102^,47339839^"; psi "0.725500";
chr7	juncbase	jcn_only_AA	107215755	107216854	.	-	.	gene_id "jcn_only_AA.351"; transcript_id "jcn_only_AA.351"; gene_name "CUFF.1975"; flanks "107215755^,107216854^"; structure "1-,2-"; splice_chain "107216811-,107216854-"; psi "0.939000";
chr3	juncbase	jcn_only_AA	33686249	33673863	.	-	.	gene_id "jcn_only_AA.352"; transcript_id "jcn_only_AA.352"; gene_name "CUFF.1975"; flanks "33686249^,33673863^"; structure "1-,2-"; splice_chain "33673866-,33673863-"; psi "0.795500";
chr1	juncbase	jcn_only_AA	156470278	156453222	.	-	.	gene_id "jcn_only_AA.353"; transcript_id "jcn_only_AA.353"; gene_name "CUFF.1975"; flanks "156470278^,156453222^"; structure "1-,2-"; splice_chain "156469352-,156453222-"; psi "0.642900";
chr6	juncbase	jcn_only_AA	128385903	128383569	.	-	.	gene_id "jcn_only_AA.354"; transcript_id "jcn_only_AA.354"; gene_name "CUFF.1975"; flanks "128385903^,128383569^"; structure "1-,2-"; splice_chain "128384670-,128383569-"; psi "0.535469";
chr6	juncbase	jcn_only_AA	128385903	128330410	.	-	.	gene_id "jcn_only_AA.355"; transcript_id "jcn_only_AA.355"; gene_name "CUFF.1975"; flanks "128385903^,128330410^"; structure "1-,2-"; splice_chain "128384670-,128330410-"; psi "0.355556";
chr6	juncbase	jcn_only_AA	128385903	128330413	.	-	.	gene_id "jcn_only_AA.356"; transcript_id "jcn_only_AA.356"; gene_name "CUFF.1975"; flanks "128385903^,128330413^"; structure "1-,2-"; splice_chain "128384670-,128330413-"; psi "0.978996";
chr1	juncbase	intron_retention	2005368	2066701	.	-	.	gene_id "intron_retention.418"; transcript_id "intron_retention.418"; gene_name "CUFF.1975"; flanks "2005368-,2066701^"; structure "0,1^2-"; splice_chain ",2005368^2066701-"; psi "0.155800";
chr4	juncbase	cassette	20555591	20568885	.	-	.	gene_id "cassette.316"; transcript_id "cassette.316"; gene_name "CUFF.1975"; flanks "20555591^,20568885-"; structure "0,1-2^"; splice_chain ",20555931-20555963^"; psi "0.590600";
chr20	juncbase	cassette	21284111	21307128	.	-	.	gene_id "cassette.317"; transcript_id "cassette.317"; gene_name "CUFF.1975"; flanks "21284111^,21307128-"; structure "0,1-2^"; splice_chain ",21306917-21307044^"; psi "0.774200";
chr11	juncbase	jcn_only_AA	5699434	5687503	.	-	.	gene_id "jcn_only_AA.357"; transcript_id "jcn_only_AA.357"; gene_name "CUFF.1975"; flanks "5699434^,5687503^"; structure "1-,2-"; splice_chain "5691177-,5687503-"; psi "0.268300";
chrX	juncbase	jcn_only_AD	47039436	47039611	.	-	.	gene_id "jcn_only_AD.438"; transcript_id "jcn_only_AD.438"; gene_name "CUFF.1975"; flanks "47039436-,47039611-"; structure "1^,2^"; splice_chain "47039436^,47039439^"; psi "0.797100";
chr16	juncbase	intron_retention	4411750	4411470	.	-	.	gene_id "intron_retention.419"; transcript_id "intron_retention.419"; gene_name "CUFF.1975"; flanks "4411750-,4411470^"; structure "0,1^2-"; splice_chain ",4411750^4411470-"; psi "0.418800";
chr10	juncbase	intron_retention	124134322	124152697	.	-	.	gene_id "intron_retention.420"; transcript_id "intron_retention.420"; gene_name "CUFF.1975"; flanks "124134322-,124152697^"; structure "0,1^2-"; splice_chain ",124134322^124152697-"; psi "0.608700";
chr5	juncbase	jcn_only_AD	60214092	60198335	.	-	.	gene_id "jcn_only_AD.439"; transcript_id "jcn_only_AD.439"; gene_name "CUFF.1975"; flanks "60214092-,60198335-"; structure "1^,2^"; splice_chain "60214092^,60199475^"; psi "0.539200";
chr2	juncbase	jcn_only_AD	242577175	242590425	.	-	.	gene_id "jcn_only_AD.440"; transcript_id "jcn_only_AD.440"; gene_name "CUFF.1975"; flanks "242577175-,242590425-"; structure "1^,2^"; splice_chain "242577175^,242577785^"; psi "0.737388";
chr2	juncbase	jcn_only_AD	242577139	242590425	.	-	.	gene_id "jcn_only_AD.441"; transcript_id "jcn_only_AD.441"; gene_name "CUFF.1975"; flanks "242577139-,242590425-"; structure "1^,2^"; splice_chain "242577139^,242577785^"; psi "0.957461";
chr10	juncbase	jcn_only_AA	78647049	78637648	.	-	.	gene_id "jcn_only_AA.358"; transcript_id "jcn_only_AA.358"; gene_name "CUFF.1975"; flanks "78647049^,78637648^"; structure "1-,2-"; splice_chain "78637651-,78637648-"; psi "0.250725";
chr14	juncbase	intron_retention	24567596	24567684	.	-	.	gene_id "intron_retention.421"; transcript_id "intron_retention.421"; gene_name "CUFF.1975"; flanks "24567596-,24567684^"; structure "0,1^2-"; splice_chain ",24567596^24567684-"; psi "0.131700";
chr6	juncbase	jcn_only_AA	128385903	128330410	.	-	.	gene_id "jcn_only_AA.359"; transcript_id "jcn_only_AA.359"; gene_name "CUFF.1975"; flanks "128385903^,128330410^"; structure "1-,2-"; splice_chain "128383569-,128330410-"; psi "0.323699";
chr6	juncbase	jcn_only_AA	128385903	128330413	.	-	.	gene_id "jcn_only_AA.360"; transcript_id "jcn_only_AA.360"; gene_name "CUFF.1975"; flanks "128385903^,128330413^"; structure "1-,2-"; splice_chain "128383569-,128330413-"; psi "0.975866";
chr4	juncbase	intron_retention	3949817	3949734	.	-	.	gene_id "intron_retention.422"; transcript_id "intron_retention.422"; gene_name "CUFF.1975"; flanks "3949817-,3949734^"; structure "0,1^2-"; splice_chain ",3949817^3949734-"; psi "0.273900";
chr9	juncbase	jcn_only_AD	43915897	43920249	.	-	.	gene_id "jcn_only_AD.442"; transcript_id "jcn_only_AD.442"; gene_name "CUFF.1975"; flanks "43915897-,43920249-"; structure "1^,2^"; splice_chain "43915897^,43915979^"; psi "0.769200";
chr7	juncbase	jcn_only_AA	150825771	150831487	.	-	.	gene_id "jcn_only_AA.361"; transcript_id "jcn_only_AA.361"; gene_name "CUFF.1975"; flanks "150825771^,150831487^"; structure "1-,2-"; splice_chain "150828159-,150831487-"; psi "0.917600";
chr18	juncbase	jcn_only_AA	63430288	63476940	.	-	.	gene_id "jcn_only_AA.362"; transcript_id "jcn_only_AA.362"; gene_name "CUFF.1975"; flanks "63430288^,63476940^"; structure "1-,2-"; splice_chain "63470351-,63476940-"; psi "0.894100";
chr7	juncbase	jcn_only_AD	73098231	73100966	.	-	.	gene_id "jcn_only_AD.443"; transcript_id "jcn_only_AD.443"; gene_name "CUFF.1975"; flanks "73098231-,73100966-"; structure "1^,2^"; splice_chain "73098231^,73098253^"; psi "0.105796";
chr7	juncbase	jcn_only_AD	73097713	73100966	.	-	.	gene_id "jcn_only_AD.444"; transcript_id "jcn_only_AD.444"; gene_name "CUFF.1975"; flanks "73097713-,73100966-"; structure "1^,2^"; splice_chain "73097713^,73098253^"; psi "0.008337";
chr7	juncbase	jcn_only_AD	73098134	73100966	.	-	.	gene_id "jcn_only_AD.445"; transcript_id "jcn_only_AD.445"; gene_name "CUFF.1975"; flanks "73098134-,73100966-"; structure "1^,2^"; splice_chain "73098134^,73098253^"; psi "0.255914";
chr12	juncbase	intron_retention	335819	335680	.	-	.	gene_id "intron_retention.423"; transcript_id "intron_retention.423"; gene_name "CUFF.1975"; flanks "335819-,335680^"; structure "0,1^2-"; splice_chain ",335819^335680-"; psi "0.931200";
chr11	juncbase	cassette	36424928	36453403	.	-	.	gene_id "cassette.318"; transcript_id "cassette.318"; gene_name "CUFF.1975"; flanks "36424928^,36453403-"; structure "0,1-2^"; splice_chain ",36440805-36440853^"; psi "0.844000";
chr3	juncbase	jcn_only_AA	8775676	8819163	.	-	.	gene_id "jcn_only_AA.363"; transcript_id "jcn_only_AA.363"; gene_name "CUFF.1975"; flanks "8775676^,8819163^"; structure "1-,2-"; splice_chain "8787212-,8819163-"; psi "0.029700";
chr11	juncbase	cassette	101852695	101863509	.	-	.	gene_id "cassette.319"; transcript_id "cassette.319"; gene_name "CUFF.1975"; flanks "101852695^,101863509-"; structure "0,1-2^"; splice_chain ",101857563-101857772^"; psi "0.883900";
chr11	juncbase	intron_retention	94704539	94704229	.	-	.	gene_id "intron_retention.424"; transcript_id "intron_retention.424"; gene_name "CUFF.1975"; flanks "94704539-,94704229^"; structure "0,1^2-"; splice_chain ",94704539^94704229-"; psi "0.293600";
chr19	juncbase	cassette	6016101	6010262	.	-	.	gene_id "cassette.320"; transcript_id "cassette.320"; gene_name "CUFF.1975"; flanks "6016101^,6010262-"; structure "0,1-2^"; splice_chain ",6013116-6012997^"; psi "0.552400";
chr12	juncbase	jcn_only_AD	66187083	66451371	.	-	.	gene_id "jcn_only_AD.446"; transcript_id "jcn_only_AD.446"; gene_name "CUFF.1975"; flanks "66187083-,66451371-"; structure "1^,2^"; splice_chain "66187083^,66232791^"; psi "0.400000";
chr16	juncbase	cassette	31383991	31388120	.	-	.	gene_id "cassette.321"; transcript_id "cassette.321"; gene_name "CUFF.1975"; flanks "31383991^,31388120-"; structure "0,1-2^"; splice_chain ",31384570-31384711^"; psi "0.750000";
chr3	juncbase	cassette	33623313	33617767	.	-	.	gene_id "cassette.322"; transcript_id "cassette.322"; gene_name "CUFF.1975"; flanks "33623313^,33617767-"; structure "0,1-2^"; splice_chain ",33618756-33618694^"; psi "0.905700";
chr10	juncbase	jcn_only_AA	123549684	123503373	.	-	.	gene_id "jcn_only_AA.364"; transcript_id "jcn_only_AA.364"; gene_name "CUFF.1975"; flanks "123549684^,123503373^"; structure "1-,2-"; splice_chain "123542214-,123503373-"; psi "0.668300";
chr8	juncbase	intron_retention	81083442	80976828	.	-	.	gene_id "intron_retention.425"; transcript_id "intron_retention.425"; gene_name "CUFF.1975"; flanks "81083442-,80976828^"; structure "0,1^2-"; splice_chain ",81083442^80976828-"; psi "0.555600";
chr19	juncbase	intron_retention	17449380	17449990	.	-	.	gene_id "intron_retention.426"; transcript_id "intron_retention.426"; gene_name "CUFF.1975"; flanks "17449380-,17449990^"; structure "0,1^2-"; splice_chain ",17449380^17449990-"; psi "0.473200";
chr22	juncbase	jcn_only_AD	21056594	21056874	.	-	.	gene_id "jcn_only_AD.447"; transcript_id "jcn_only_AD.447"; gene_name "CUFF.1975"; flanks "21056594-,21056874-"; structure "1^,2^"; splice_chain "21056594^,21056748^"; psi "0.350900";
chr4	juncbase	jcn_only_AD	120449944	120471534	.	-	.	gene_id "jcn_only_AD.448"; transcript_id "jcn_only_AD.448"; gene_name "CUFF.1975"; flanks "120449944-,120471534-"; structure "1^,2^"; splice_chain "120449944^,120465000^"; psi "0.929900";
chr9	juncbase	intron_retention	130929818	130929443	.	-	.	gene_id "intron_retention.427"; transcript_id "intron_retention.427"; gene_name "CUFF.1975"; flanks "130929818-,130929443^"; structure "0,1^2-"; splice_chain ",130929818^130929443-"; psi "0.534100";
chrX	juncbase	intron_retention	19933057	19932544	.	-	.	gene_id "intron_retention.428"; transcript_id "intron_retention.428"; gene_name "CUFF.1975"; flanks "19933057-,19932544^"; structure "0,1^2-"; splice_chain ",19933057^19932544-"; psi "0.024300";
chr7	juncbase	cassette	86594220	86574362	.	-	.	gene_id "cassette.323"; transcript_id "cassette.323"; gene_name "CUFF.1975"; flanks "86594220^,86574362-"; structure "0,1-2^"; splice_chain ",86577238-86577043^"; psi "0.985600";
chr5	juncbase	jcn_only_AD	37370923	37364486	.	-	.	gene_id "jcn_only_AD.449"; transcript_id "jcn_only_AD.449"; gene_name "CUFF.1975"; flanks "37370923-,37364486-"; structure "1^,2^"; splice_chain "37370923^,37370768^"; psi "0.206200";
chr12	juncbase	intron_retention	58017881	58018283	.	-	.	gene_id "intron_retention.429"; transcript_id "intron_retention.429"; gene_name "CUFF.1975"; flanks "58017881-,58018283^"; structure "0,1^2-"; splice_chain ",58017881^58018283-"; psi "0.928100";
chr12	juncbase	jcn_only_AA	48298738	48272898	.	-	.	gene_id "jcn_only_AA.365"; transcript_id "jcn_only_AA.365"; gene_name "CUFF.1975"; flanks "48298738^,48272898^"; structure "1-,2-"; splice_chain "48276557-,48272898-"; psi "0.295567";
chr12	juncbase	intron_retention	69210618	69233542	.	-	.	gene_id "intron_retention.430"; transcript_id "intron_retention.430"; gene_name "CUFF.1975"; flanks "69210618-,69233542^"; structure "0,1^2-"; splice_chain ",69210618^69233542-"; psi "0.919000";
chr3	juncbase	cassette	132764864	132948110	.	-	.	gene_id "cassette.324"; transcript_id "cassette.324"; gene_name "CUFF.1975"; flanks "132764864^,132948110-"; structure "0,1-2^"; splice_chain ",132793159-132793202^"; psi "0.102100";
chr17	juncbase	jcn_only_AD	1937136	1939264	.	-	.	gene_id "jcn_only_AD.450"; transcript_id "jcn_only_AD.450"; gene_name "CUFF.1975"; flanks "1937136-,1939264-"; structure "1^,2^"; splice_chain "1937136^,1938314^"; psi "0.858000";
chrX	juncbase	cassette	78003531	78005671	.	-	.	gene_id "cassette.325"; transcript_id "cassette.325"; gene_name "CUFF.1975"; flanks "78003531^,78005671-"; structure "0,1-2^"; splice_chain ",78004460-78004727^"; psi "0.404300";
chr14	juncbase	jcn_only_AD	76149999	76156535	.	-	.	gene_id "jcn_only_AD.451"; transcript_id "jcn_only_AD.451"; gene_name "CUFF.1975"; flanks "76149999-,76156535-"; structure "1^,2^"; splice_chain "76149999^,76156204^"; psi "0.480800";
chr11	juncbase	jcn_only_AA	560683	558979	.	-	.	gene_id "jcn_only_AA.366"; transcript_id "jcn_only_AA.366"; gene_name "CUFF.1975"; flanks "560683^,558979^"; structure "1-,2-"; splice_chain "559498-,558979-"; psi "0.250000";
chr19	juncbase	intron_retention	39926247	39924401	.	-	.	gene_id "intron_retention.431"; transcript_id "intron_retention.431"; gene_name "CUFF.1975"; flanks "39926247-,39924401^"; structure "0,1^2-"; splice_chain ",39926247^39924401-"; psi "0.067500";
chr12	juncbase	jcn_only_AD	58014836	58015046	.	-	.	gene_id "jcn_only_AD.452"; transcript_id "jcn_only_AD.452"; gene_name "CUFF.1975"; flanks "58014836-,58015046-"; structure "1^,2^"; splice_chain "58014836^,58014875^"; psi "0.168000";
chr6	juncbase	intron_retention	32122023	32122364	.	-	.	gene_id "intron_retention.432"; transcript_id "intron_retention.432"; gene_name "CUFF.1975"; flanks "32122023-,32122364^"; structure "0,1^2-"; splice_chain ",32122023^32122364-"; psi "0.810100";
chr11	juncbase	cassette	2188665	2187998	.	-	.	gene_id "cassette.326"; transcript_id "cassette.326"; gene_name "CUFF.1975"; flanks "2188665^,2187998-"; structure "0,1-2^"; splice_chain ",2188262-2188117^"; psi "0.789000";
chr11	juncbase	jcn_only_AD	6633605	6633049	.	-	.	gene_id "jcn_only_AD.453"; transcript_id "jcn_only_AD.453"; gene_name "CUFF.1975"; flanks "6633605-,6633049-"; structure "1^,2^"; splice_chain "6633605^,6633189^"; psi "0.380300";
chr19	juncbase	intron_retention	6375713	6375627	.	-	.	gene_id "intron_retention.433"; transcript_id "intron_retention.433"; gene_name "CUFF.1975"; flanks "6375713-,6375627^"; structure "0,1^2-"; splice_chain ",6375713^6375627-"; psi "0.717600";
chr8	juncbase	cassette	120758945	120756633	.	-	.	gene_id "cassette.327"; transcript_id "cassette.327"; gene_name "CUFF.1975"; flanks "120758945^,120756633-"; structure "0,1-2^"; splice_chain ",120757276-120757121^"; psi "0.822600";
chr7	juncbase	cassette	150831655	150838985	.	-	.	gene_id "cassette.328"; transcript_id "cassette.328"; gene_name "CUFF.1975"; flanks "150831655^,150838985-"; structure "0,1-2^"; splice_chain ",150837066-150837203^"; psi "0.574100";
chr2	juncbase	cassette	166727307	166714914	.	-	.	gene_id "cassette.329"; transcript_id "cassette.329"; gene_name "CUFF.1975"; flanks "166727307^,166714914-"; structure "0,1-2^"; splice_chain ",166719575-166719454^"; psi "0.749000";
chr16	juncbase	jcn_only_AA	57513354	57509869	.	-	.	gene_id "jcn_only_AA.367"; transcript_id "jcn_only_AA.367"; gene_name "CUFF.1975"; flanks "57513354^,57509869^"; structure "1-,2-"; splice_chain "57512574-,57509869-"; psi "0.986600";
chr16	juncbase	intron_retention	70404288	70405275	.	-	.	gene_id "intron_retention.434"; transcript_id "intron_retention.434"; gene_name "CUFF.1975"; flanks "70404288-,70405275^"; structure "0,1^2-"; splice_chain ",70404288^70405275-"; psi "0.345200";
chr3	juncbase	jcn_only_AD	38061679	38058210	.	-	.	gene_id "jcn_only_AD.454"; transcript_id "jcn_only_AD.454"; gene_name "CUFF.1975"; flanks "38061679-,38058210-"; structure "1^,2^"; splice_chain "38061679^,38060461^"; psi "0.837700";
chr9	juncbase	intron_retention	131483704	131483547	.	-	.	gene_id "intron_retention.435"; transcript_id "intron_retention.435"; gene_name "CUFF.1975"; flanks "131483704-,131483547^"; structure "0,1^2-"; splice_chain ",131483704^131483547-"; psi "0.862600";
chr2	juncbase	jcn_only_AA	242437031	242435949	.	-	.	gene_id "jcn_only_AA.368"; transcript_id "jcn_only_AA.368"; gene_name "CUFF.1975"; flanks "242437031^,242435949^"; structure "1-,2-"; splice_chain "242436793-,242435949-"; psi "0.923000";
chr3	juncbase	jcn_only_AA	194071971	194063431	.	-	.	gene_id "jcn_only_AA.369"; transcript_id "jcn_only_AA.369"; gene_name "CUFF.1975"; flanks "194071971^,194063431^"; structure "1-,2-"; splice_chain "194063434-,194063431-"; psi "0.769200";
chr3	juncbase	jcn_only_AA	49362135	49348170	.	-	.	gene_id "jcn_only_AA.370"; transcript_id "jcn_only_AA.370"; gene_name "CUFF.1975"; flanks "49362135^,49348170^"; structure "1-,2-"; splice_chain "49349087-,49348170-"; psi "0.032327";
chr3	juncbase	jcn_only_AD	73610602	73453546	.	-	.	gene_id "jcn_only_AD.455"; transcript_id "jcn_only_AD.455"; gene_name "CUFF.1975"; flanks "73610602-,73453546-"; structure "1^,2^"; splice_chain "73610602^,73482790^"; psi "0.031943";
chr3	juncbase	jcn_only_AD	73651505	73453546	.	-	.	gene_id "jcn_only_AD.456"; transcript_id "jcn_only_AD.456"; gene_name "CUFF.1975"; flanks "73651505-,73453546-"; structure "1^,2^"; splice_chain "73651505^,73482790^"; psi "0.013531";
chr3	juncbase	jcn_only_AD	73523606	73453546	.	-	.	gene_id "jcn_only_AD.457"; transcript_id "jcn_only_AD.457"; gene_name "CUFF.1975"; flanks "73523606-,73453546-"; structure "1^,2^"; splice_chain "73523606^,73482790^"; psi "0.046985";
chr3	juncbase	jcn_only_AD	73605851	73453546	.	-	.	gene_id "jcn_only_AD.458"; transcript_id "jcn_only_AD.458"; gene_name "CUFF.1975"; flanks "73605851-,73453546-"; structure "1^,2^"; splice_chain "73605851^,73482790^"; psi "0.114371";
chr3	juncbase	jcn_only_AD	73618302	73453546	.	-	.	gene_id "jcn_only_AD.459"; transcript_id "jcn_only_AD.459"; gene_name "CUFF.1975"; flanks "73618302-,73453546-"; structure "1^,2^"; splice_chain "73618302^,73482790^"; psi "0.066554";
chr1	juncbase	cassette	166810325	166816731	.	-	.	gene_id "cassette.330"; transcript_id "cassette.330"; gene_name "CUFF.1975"; flanks "166810325^,166816731-"; structure "0,1-2^"; splice_chain ",166815849-166815975^"; psi "0.600000";
chr3	juncbase	intron_retention	119529041	119530386	.	-	.	gene_id "intron_retention.436"; transcript_id "intron_retention.436"; gene_name "CUFF.1975"; flanks "119529041-,119530386^"; structure "0,1^2-"; splice_chain ",119529041^119530386-"; psi "0.523100";
chr19	juncbase	jcn_only_AD	44764091	44768467	.	-	.	gene_id "jcn_only_AD.460"; transcript_id "jcn_only_AD.460"; gene_name "CUFF.1975"; flanks "44764091-,44768467-"; structure "1^,2^"; splice_chain "44764091^,44764155^"; psi "0.097102";
chr22	juncbase	intron_retention	20748624	20748853	.	-	.	gene_id "intron_retention.437"; transcript_id "intron_retention.437"; gene_name "CUFF.1975"; flanks "20748624-,20748853^"; structure "0,1^2-"; splice_chain ",20748624^20748853-"; psi "0.941200";
chr16	juncbase	jcn_only_AA	67234871	67235312	.	-	.	gene_id "jcn_only_AA.371"; transcript_id "jcn_only_AA.371"; gene_name "CUFF.1975"; flanks "67234871^,67235312^"; structure "1-,2-"; splice_chain "67235288-,67235312-"; psi "0.024900";
chr17	juncbase	intron_retention	80436794	80438958	.	-	.	gene_id "intron_retention.438"; transcript_id "intron_retention.438"; gene_name "CUFF.1975"; flanks "80436794-,80438958^"; structure "0,1^2-"; splice_chain ",80436794^80438958-"; psi "0.047400";
chr15	juncbase	jcn_only_AA	55789910	55783454	.	-	.	gene_id "jcn_only_AA.372"; transcript_id "jcn_only_AA.372"; gene_name "CUFF.1975"; flanks "55789910^,55783454^"; structure "1-,2-"; splice_chain "55787400-,55783454-"; psi "0.921300";
chr8	juncbase	cassette	80963762	80956443	.	-	.	gene_id "cassette.331"; transcript_id "cassette.331"; gene_name "CUFF.1975"; flanks "80963762^,80956443-"; structure "0,1-2^"; splice_chain ",80962706-80962581^"; psi "0.962500";
chr17	juncbase	cassette	1937136	1939823	.	-	.	gene_id "cassette.332"; transcript_id "cassette.332"; gene_name "CUFF.1975"; flanks "1937136^,1939823-"; structure "0,1-2^"; splice_chain ",1939264-1939385^"; psi "0.739900";
chr2	juncbase	jcn_only_AD	38231359	38244329	.	-	.	gene_id "jcn_only_AD.461"; transcript_id "jcn_only_AD.461"; gene_name "CUFF.1975"; flanks "38231359-,38244329-"; structure "1^,2^"; splice_chain "38231359^,38239792^"; psi "0.915900";
chr11	juncbase	jcn_only_AA	119291579	119291088	.	-	.	gene_id "jcn_only_AA.373"; transcript_id "jcn_only_AA.373"; gene_name "CUFF.1975"; flanks "119291579^,119291088^"; structure "1-,2-"; splice_chain "119291158-,119291088-"; psi "0.157016";
chr11	juncbase	jcn_only_AA	119291579	119291096	.	-	.	gene_id "jcn_only_AA.374"; transcript_id "jcn_only_AA.374"; gene_name "CUFF.1975"; flanks "119291579^,119291096^"; structure "1-,2-"; splice_chain "119291158-,119291096-"; psi "0.922183";
chr11	juncbase	jcn_only_AA	119291579	119291045	.	-	.	gene_id "jcn_only_AA.375"; transcript_id "jcn_only_AA.375"; gene_name "CUFF.1975"; flanks "119291579^,119291045^"; structure "1-,2-"; splice_chain "119291158-,119291045-"; psi "0.152296";
chr19	juncbase	intron_retention	44764091	44768481	.	-	.	gene_id "intron_retention.439"; transcript_id "intron_retention.439"; gene_name "CUFF.1975"; flanks "44764091-,44768481^"; structure "0,1^2-"; splice_chain ",44764091^44768481-"; psi "0.707100";
chr16	juncbase	intron_retention	3115495	3115643	.	-	.	gene_id "intron_retention.440"; transcript_id "intron_retention.440"; gene_name "CUFF.1975"; flanks "3115495-,3115643^"; structure "0,1^2-"; splice_chain ",3115495^3115643-"; psi "0.711000";
chr17	juncbase	intron_retention	79479760	79479386	.	-	.	gene_id "intron_retention.441"; transcript_id "intron_retention.441"; gene_name "CUFF.1975"; flanks "79479760-,79479386^"; structure "0,1^2-"; splice_chain ",79479760^79479386-"; psi "0.070000";
chr12	juncbase	intron_retention	58019535	58019781	.	-	.	gene_id "intron_retention.442"; transcript_id "intron_retention.442"; gene_name "CUFF.1975"; flanks "58019535-,58019781^"; structure "0,1^2-"; splice_chain ",58019535^58019781-"; psi "0.035400";
chr19	juncbase	jcn_only_AD	33892627	33882385	.	-	.	gene_id "jcn_only_AD.462"; transcript_id "jcn_only_AD.462"; gene_name "CUFF.1975"; flanks "33892627-,33882385-"; structure "1^,2^"; splice_chain "33892627^,33886996^"; psi "0.942656";
chr3	juncbase	jcn_only_AD	125745236	125741775	.	-	.	gene_id "jcn_only_AD.463"; transcript_id "jcn_only_AD.463"; gene_name "CUFF.1975"; flanks "125745236-,125741775-"; structure "1^,2^"; splice_chain "125745236^,125745178^"; psi "0.489400";
chr1	juncbase	cassette	167272811	167301707	.	-	.	gene_id "cassette.333"; transcript_id "cassette.333"; gene_name "CUFF.1975"; flanks "167272811^,167301707-"; structure "0,1-2^"; splice_chain ",167288251-167288293^"; psi "0.279300";
chr18	juncbase	jcn_only_AD	12014372	12028042	.	-	.	gene_id "jcn_only_AD.464"; transcript_id "jcn_only_AD.464"; gene_name "CUFF.1975"; flanks "12014372-,12028042-"; structure "1^,2^"; splice_chain "12014372^,12021821^"; psi "0.905700";
chr17	juncbase	intron_retention	61573784	61574894	.	-	.	gene_id "intron_retention.443"; transcript_id "intron_retention.443"; gene_name "CUFF.1975"; flanks "61573784-,61574894^"; structure "0,1^2-"; splice_chain ",61573784^61574894-"; psi "0.953800";
chr5	juncbase	jcn_only_AD	54579031	54577343	.	-	.	gene_id "jcn_only_AD.465"; transcript_id "jcn_only_AD.465"; gene_name "CUFF.1975"; flanks "54579031-,54577343-"; structure "1^,2^"; splice_chain "54579031^,54578944^"; psi "0.843800";
chr7	juncbase	intron_retention	107214266	107215633	.	-	.	gene_id "intron_retention.444"; transcript_id "intron_retention.444"; gene_name "CUFF.1975"; flanks "107214266-,107215633^"; structure "0,1^2-"; splice_chain ",107214266^107215633-"; psi "0.328100";
chr2	juncbase	jcn_only_AD	61763845	61761038	.	-	.	gene_id "jcn_only_AD.466"; transcript_id "jcn_only_AD.466"; gene_name "CUFF.1975"; flanks "61763845-,61761038-"; structure "1^,2^"; splice_chain "61763845^,61761558^"; psi "0.148520";
chr2	juncbase	jcn_only_AD	61763337	61761038	.	-	.	gene_id "jcn_only_AD.467"; transcript_id "jcn_only_AD.467"; gene_name "CUFF.1975"; flanks "61763337-,61761038-"; structure "1^,2^"; splice_chain "61763337^,61761558^"; psi "0.307762";
chr2	juncbase	jcn_only_AD	61764697	61761038	.	-	.	gene_id "jcn_only_AD.468"; transcript_id "jcn_only_AD.468"; gene_name "CUFF.1975"; flanks "61764697-,61761038-"; structure "1^,2^"; splice_chain "61764697^,61761558^"; psi "0.491328";
chr2	juncbase	jcn_only_AD	61764154	61761038	.	-	.	gene_id "jcn_only_AD.469"; transcript_id "jcn_only_AD.469"; gene_name "CUFF.1975"; flanks "61764154-,61761038-"; structure "1^,2^"; splice_chain "61764154^,61761558^"; psi "0.752033";
chr2	juncbase	jcn_only_AD	61765627	61761038	.	-	.	gene_id "jcn_only_AD.470"; transcript_id "jcn_only_AD.470"; gene_name "CUFF.1975"; flanks "61765627-,61761038-"; structure "1^,2^"; splice_chain "61765627^,61761558^"; psi "0.240916";
chr2	juncbase	jcn_only_AD	61761693	61761038	.	-	.	gene_id "jcn_only_AD.471"; transcript_id "jcn_only_AD.471"; gene_name "CUFF.1975"; flanks "61761693-,61761038-"; structure "1^,2^"; splice_chain "61761693^,61761558^"; psi "0.382341";
chr7	juncbase	cassette	102257072	102249901	.	-	.	gene_id "cassette.334"; transcript_id "cassette.334"; gene_name "CUFF.1975"; flanks "102257072^,102249901-"; structure "0,1-2^"; splice_chain ",102251589-102251533^"; psi "0.333300";
chr12	juncbase	intron_retention	26205535	26208212	.	-	.	gene_id "intron_retention.445"; transcript_id "intron_retention.445"; gene_name "CUFF.1975"; flanks "26205535-,26208212^"; structure "0,1^2-"; splice_chain ",26205535^26208212-"; psi "0.875000";
chr7	juncbase	jcn_only_AD	34888275	34889177	.	-	.	gene_id "jcn_only_AD.472"; transcript_id "jcn_only_AD.472"; gene_name "CUFF.1975"; flanks "34888275-,34889177-"; structure "1^,2^"; splice_chain "34888275^,34889034^"; psi "0.871400";
chr2	juncbase	jcn_only_AD	110922265	110920709	.	-	.	gene_id "jcn_only_AD.473"; transcript_id "jcn_only_AD.473"; gene_name "CUFF.1975"; flanks "110922265-,110920709-"; structure "1^,2^"; splice_chain "110922265^,110922097^"; psi "0.960900";
chr19	juncbase	intron_retention	41939442	41938967	.	-	.	gene_id "intron_retention.446"; transcript_id "intron_retention.446"; gene_name "CUFF.1975"; flanks "41939442-,41938967^"; structure "0,1^2-"; splice_chain ",41939442^41938967-"; psi "0.028700";
chrX	juncbase	jcn_only_AD	107335066	107369307	.	-	.	gene_id "jcn_only_AD.474"; transcript_id "jcn_only_AD.474"; gene_name "CUFF.1975"; flanks "107335066-,107369307-"; structure "1^,2^"; splice_chain "107335066^,107335109^"; psi "0.657700";
chr7	juncbase	jcn_only_AA	73101425	73277203	.	-	.	gene_id "jcn_only_AA.376"; transcript_id "jcn_only_AA.376"; gene_name "CUFF.1975"; flanks "73101425^,73277203^"; structure "1-,2-"; splice_chain "73105246-,73277203-"; psi "0.011625";
chr7	juncbase	jcn_only_AA	73101425	73106926	.	-	.	gene_id "jcn_only_AA.377"; transcript_id "jcn_only_AA.377"; gene_name "CUFF.1975"; flanks "73101425^,73106926^"; structure "1-,2-"; splice_chain "73105246-,73106926-"; psi "0.236505";
chrX	juncbase	jcn_only_AD	13803741	13801640	.	-	.	gene_id "jcn_only_AD.475"; transcript_id "jcn_only_AD.475"; gene_name "CUFF.1975"; flanks "13803741-,13801640-"; structure "1^,2^"; splice_chain "13803741^,13801898^"; psi "0.972600";
chr15	juncbase	cassette	45467417	45464276	.	-	.	gene_id "cassette.335"; transcript_id "cassette.335"; gene_name "CUFF.1975"; flanks "45467417^,45464276-"; structure "0,1-2^"; splice_chain ",45464516-45464345^"; psi "0.772700";
chr17	juncbase	jcn_only_AA	61905569	61907212	.	-	.	gene_id "jcn_only_AA.378"; transcript_id "jcn_only_AA.378"; gene_name "CUFF.1975"; flanks "61905569^,61907212^"; structure "1-,2-"; splice_chain "61906854-,61907212-"; psi "0.071200";
chr17	juncbase	jcn_only_AA	1617150	1615693	.	-	.	gene_id "jcn_only_AA.379"; transcript_id "jcn_only_AA.379"; gene_name "CUFF.1975"; flanks "1617150^,1615693^"; structure "1-,2-"; splice_chain "1615940-,1615693-"; psi "0.598349";
chr9	juncbase	jcn_only_AD	104192091	104188920	.	-	.	gene_id "jcn_only_AD.476"; transcript_id "jcn_only_AD.476"; gene_name "CUFF.1975"; flanks "104192091-,104188920-"; structure "1^,2^"; splice_chain "104192091^,104189764^"; psi "0.375000";
chr2	juncbase	intron_retention	220100817	220101044	.	-	.	gene_id "intron_retention.447"; transcript_id "intron_retention.447"; gene_name "CUFF.1975"; flanks "220100817-,220101044^"; structure "0,1^2-"; splice_chain ",220100817^220101044-"; psi "0.096800";
chr19	juncbase	jcn_only_AA	17611685	17615264	.	-	.	gene_id "jcn_only_AA.380"; transcript_id "jcn_only_AA.380"; gene_name "CUFF.1975"; flanks "17611685^,17615264^"; structure "1-,2-"; splice_chain "17612082-,17615264-"; psi "0.440000";
chr6	juncbase	intron_retention	5108786	5104184	.	-	.	gene_id "intron_retention.448"; transcript_id "intron_retention.448"; gene_name "CUFF.1975"; flanks "5108786-,5104184^"; structure "0,1^2-"; splice_chain ",5108786^5104184-"; psi "0.889800";
chr19	juncbase	intron_retention	50304878	50304979	.	-	.	gene_id "intron_retention.449"; transcript_id "intron_retention.449"; gene_name "CUFF.1975"; flanks "50304878-,50304979^"; structure "0,1^2-"; splice_chain ",50304878^50304979-"; psi "0.014100";
chr14	juncbase	jcn_only_AD	61448100	61449226	.	-	.	gene_id "jcn_only_AD.477"; transcript_id "jcn_only_AD.477"; gene_name "CUFF.1975"; flanks "61448100-,61449226-"; structure "1^,2^"; splice_chain "61448100^,61448409^"; psi "0.917991";
chr14	juncbase	jcn_only_AD	61448405	61449226	.	-	.	gene_id "jcn_only_AD.478"; transcript_id "jcn_only_AD.478"; gene_name "CUFF.1975"; flanks "61448405-,61449226-"; structure "1^,2^"; splice_chain "61448405^,61448409^"; psi "0.620824";
chr13	juncbase	intron_retention	21237525	21237637	.	-	.	gene_id "intron_retention.450"; transcript_id "intron_retention.450"; gene_name "CUFF.1975"; flanks "21237525-,21237637^"; structure "0,1^2-"; splice_chain ",21237525^21237637-"; psi "0.064800";
chr12	juncbase	intron_retention	56578628	56578028	.	-	.	gene_id "intron_retention.451"; transcript_id "intron_retention.451"; gene_name "CUFF.1975"; flanks "56578628-,56578028^"; structure "0,1^2-"; splice_chain ",56578628^56578028-"; psi "0.154100";
chr11	juncbase	cassette	65480529	65481064	.	-	.	gene_id "cassette.336"; transcript_id "cassette.336"; gene_name "CUFF.1975"; flanks "65480529^,65481064-"; structure "0,1-2^"; splice_chain ",65480819-65480974^"; psi "0.824400";
chr11	juncbase	intron_retention	5686886	5685403	.	-	.	gene_id "intron_retention.452"; transcript_id "intron_retention.452"; gene_name "CUFF.1975"; flanks "5686886-,5685403^"; structure "0,1^2-"; splice_chain ",5686886^5685403-"; psi "0.557500";
chr17	juncbase	jcn_only_AA	79893999	79893020	.	-	.	gene_id "jcn_only_AA.381"; transcript_id "jcn_only_AA.381"; gene_name "CUFF.1975"; flanks "79893999^,79893020^"; structure "1-,2-"; splice_chain "79893392-,79893020-"; psi "0.043800";
chr1	juncbase	intron_retention	151158274	151158096	.	-	.	gene_id "intron_retention.453"; transcript_id "intron_retention.453"; gene_name "CUFF.1975"; flanks "151158274-,151158096^"; structure "0,1^2-"; splice_chain ",151158274^151158096-"; psi "0.089500";
chr14	juncbase	jcn_only_AA	76368567	76420767	.	-	.	gene_id "jcn_only_AA.382"; transcript_id "jcn_only_AA.382"; gene_name "CUFF.1975"; flanks "76368567^,76420767^"; structure "1-,2-"; splice_chain "76372898-,76420767-"; psi "0.306150";
chr14	juncbase	jcn_only_AA	76368567	76407767	.	-	.	gene_id "jcn_only_AA.383"; transcript_id "jcn_only_AA.383"; gene_name "CUFF.1975"; flanks "76368567^,76407767^"; structure "1-,2-"; splice_chain "76372898-,76407767-"; psi "0.706945";
chr3	juncbase	jcn_only_AD	27243001	27233733	.	-	.	gene_id "jcn_only_AD.479"; transcript_id "jcn_only_AD.479"; gene_name "CUFF.1975"; flanks "27243001-,27233733-"; structure "1^,2^"; splice_chain "27243001^,27236028^"; psi "0.924568";
chrX	juncbase	jcn_only_AD	19955623	19954016	.	-	.	gene_id "jcn_only_AD.480"; transcript_id "jcn_only_AD.480"; gene_name "CUFF.1975"; flanks "19955623-,19954016-"; structure "1^,2^"; splice_chain "19955623^,19955536^"; psi "0.806100";
chr1	juncbase	jcn_only_AA	167301772	167343393	.	-	.	gene_id "jcn_only_AA.384"; transcript_id "jcn_only_AA.384"; gene_name "CUFF.1975"; flanks "167301772^,167343393^"; structure "1-,2-"; splice_chain "167334704-,167343393-"; psi "0.260900";
chr11	juncbase	intron_retention	6640615	6640498	.	-	.	gene_id "intron_retention.454"; transcript_id "intron_retention.454"; gene_name "CUFF.1975"; flanks "6640615-,6640498^"; structure "0,1^2-"; splice_chain ",6640615^6640498-"; psi "0.204000";
chr16	juncbase	intron_retention	30006862	30006784	.	-	.	gene_id "intron_retention.455"; transcript_id "intron_retention.455"; gene_name "CUFF.1975"; flanks "30006862-,30006784^"; structure "0,1^2-"; splice_chain ",30006862^30006784-"; psi "0.030600";
chr5	juncbase	cassette	54423085	54420856	.	-	.	gene_id "cassette.337"; transcript_id "cassette.337"; gene_name "CUFF.1975"; flanks "54423085^,54420856-"; structure "0,1-2^"; splice_chain ",54422267-54422182^"; psi "0.351100";
chr12	juncbase	cassette	49351093	49334971	.	-	.	gene_id "cassette.338"; transcript_id "cassette.338"; gene_name "CUFF.1975"; flanks "49351093^,49334971-"; structure "0,1-2^"; splice_chain ",49350318-49349881^"; psi "0.709100";
chr2	juncbase	jcn_only_AA	171191960	171225732	.	-	.	gene_id "jcn_only_AA.385"; transcript_id "jcn_only_AA.385"; gene_name "CUFF.1975"; flanks "171191960^,171225732^"; structure "1-,2-"; splice_chain "171225718-,171225732-"; psi "0.987100";
chr19	juncbase	jcn_only_AD	34003499	33984243	.	-	.	gene_id "jcn_only_AD.481"; transcript_id "jcn_only_AD.481"; gene_name "CUFF.1975"; flanks "34003499-,33984243-"; structure "1^,2^"; splice_chain "34003499^,34001934^"; psi "0.663366";
chr11	juncbase	intron_retention	3418636	3422989	.	-	.	gene_id "intron_retention.456"; transcript_id "intron_retention.456"; gene_name "CUFF.1975"; flanks "3418636-,3422989^"; structure "0,1^2-"; splice_chain ",3418636^3422989-"; psi "0.412500";
chr19	juncbase	intron_retention	50309510	50309938	.	-	.	gene_id "intron_retention.457"; transcript_id "intron_retention.457"; gene_name "CUFF.1975"; flanks "50309510-,50309938^"; structure "0,1^2-"; splice_chain ",50309510^50309938-"; psi "0.042300";
chr7	juncbase	jcn_only_AA	34724296	34818074	.	-	.	gene_id "jcn_only_AA.386"; transcript_id "jcn_only_AA.386"; gene_name "CUFF.1975"; flanks "34724296^,34818074^"; structure "1-,2-"; splice_chain "34725363-,34818074-"; psi "0.708280";
chr7	juncbase	jcn_only_AA	34724296	34818107	.	-	.	gene_id "jcn_only_AA.387"; transcript_id "jcn_only_AA.387"; gene_name "CUFF.1975"; flanks "34724296^,34818107^"; structure "1-,2-"; splice_chain "34725363-,34818107-"; psi "0.487772";
chr19	juncbase	jcn_only_AD	14887538	14885118	.	-	.	gene_id "jcn_only_AD.482"; transcript_id "jcn_only_AD.482"; gene_name "CUFF.1975"; flanks "14887538-,14885118-"; structure "1^,2^"; splice_chain "14887538^,14887216^"; psi "0.948400";
chr5	juncbase	jcn_only_AA	82969243	82948640	.	-	.	gene_id "jcn_only_AA.388"; transcript_id "jcn_only_AA.388"; gene_name "CUFF.1975"; flanks "82969243^,82948640^"; structure "1-,2-"; splice_chain "82948643-,82948640-"; psi "0.119100";
chr11	juncbase	intron_retention	117070148	117070349	.	-	.	gene_id "intron_retention.458"; transcript_id "intron_retention.458"; gene_name "CUFF.1975"; flanks "117070148-,117070349^"; structure "0,1^2-"; splice_chain ",117070148^117070349-"; psi "0.831000";
chr11	juncbase	intron_retention	119056337	119056631	.	-	.	gene_id "intron_retention.459"; transcript_id "intron_retention.459"; gene_name "CUFF.1975"; flanks "119056337-,119056631^"; structure "0,1^2-"; splice_chain ",119056337^119056631-"; psi "0.343800";
chr3	juncbase	cassette	57582801	57569734	.	-	.	gene_id "cassette.339"; transcript_id "cassette.339"; gene_name "CUFF.1975"; flanks "57582801^,57569734-"; structure "0,1-2^"; splice_chain ",57570191-57570111^"; psi "0.726300";
chr3	juncbase	cassette	57582801	57563114	.	-	.	gene_id "cassette.340"; transcript_id "cassette.340"; gene_name "CUFF.1975"; flanks "57582801^,57563114-"; structure "0,1-2^"; splice_chain ",57570191-57570111^"; psi "0.726300";
chr8	juncbase	jcn_only_AD	56663523	56656179	.	-	.	gene_id "jcn_only_AD.483"; transcript_id "jcn_only_AD.483"; gene_name "CUFF.1975"; flanks "56663523-,56656179-"; structure "1^,2^"; splice_chain "56663523^,56657620^"; psi "0.600000";
chr17	juncbase	intron_retention	6353392	6353682	.	-	.	gene_id "intron_retention.460"; transcript_id "intron_retention.460"; gene_name "CUFF.1975"; flanks "6353392-,6353682^"; structure "0,1^2-"; splice_chain ",6353392^6353682-"; psi "0.348500";
chr19	juncbase	jcn_only_AD	16594741	16593596	.	-	.	gene_id "jcn_only_AD.484"; transcript_id "jcn_only_AD.484"; gene_name "CUFF.1975"; flanks "16594741-,16593596-"; structure "1^,2^"; splice_chain "16594741^,16594573^"; psi "0.227300";
chr3	juncbase	jcn_only_AD	49377917	49373029	.	-	.	gene_id "jcn_only_AD.485"; transcript_id "jcn_only_AD.485"; gene_name "CUFF.1975"; flanks "49377917-,49373029-"; structure "1^,2^"; splice_chain "49377917^,49377357^"; psi "0.522200";
chr17	juncbase	jcn_only_AD	29657516	29661856	.	-	.	gene_id "jcn_only_AD.486"; transcript_id "jcn_only_AD.486"; gene_name "CUFF.1975"; flanks "29657516-,29661856-"; structure "1^,2^"; splice_chain "29657516^,29661748^"; psi "0.652200";
chr18	juncbase	cassette	61379927	61387247	.	-	.	gene_id "cassette.341"; transcript_id "cassette.341"; gene_name "CUFF.1975"; flanks "61379927^,61387247-"; structure "0,1-2^"; splice_chain ",61383269-61383386^"; psi "0.926400";
chrX	juncbase	jcn_only_AD	107395088	107396209	.	-	.	gene_id "jcn_only_AD.487"; transcript_id "jcn_only_AD.487"; gene_name "CUFF.1975"; flanks "107395088-,107396209-"; structure "1^,2^"; splice_chain "107395088^,107395235^"; psi "0.926600";
chr10	juncbase	cassette	70661227	70666467	.	-	.	gene_id "cassette.342"; transcript_id "cassette.342"; gene_name "CUFF.1975"; flanks "70661227^,70666467-"; structure "0,1-2^"; splice_chain ",70665982-70666093^"; psi "0.874200";
chr20	juncbase	cassette	30115385	30132750	.	-	.	gene_id "cassette.343"; transcript_id "cassette.343"; gene_name "CUFF.1975"; flanks "30115385^,30132750-"; structure "0,1-2^"; splice_chain ",30125982-30126064^"; psi "0.768900";
chr8	juncbase	intron_retention	75262707	75263533	.	-	.	gene_id "intron_retention.461"; transcript_id "intron_retention.461"; gene_name "CUFF.1975"; flanks "75262707-,75263533^"; structure "0,1^2-"; splice_chain ",75262707^75263533-"; psi "0.899400";
chr7	juncbase	jcn_only_AA	156471771	156469377	.	-	.	gene_id "jcn_only_AA.389"; transcript_id "jcn_only_AA.389"; gene_name "CUFF.1975"; flanks "156471771^,156469377^"; structure "1-,2-"; splice_chain "156471044-,156469377-"; psi "0.770739";
chr7	juncbase	jcn_only_AA	156471771	156469318	.	-	.	gene_id "jcn_only_AA.390"; transcript_id "jcn_only_AA.390"; gene_name "CUFF.1975"; flanks "156471771^,156469318^"; structure "1-,2-"; splice_chain "156471044-,156469318-"; psi "0.353259";
chr22	juncbase	jcn_only_AD	21058328	21058476	.	-	.	gene_id "jcn_only_AD.488"; transcript_id "jcn_only_AD.488"; gene_name "CUFF.1975"; flanks "21058328-,21058476-"; structure "1^,2^"; splice_chain "21058328^,21058344^"; psi "0.984400";
chr15	juncbase	intron_retention	74753976	74773546	.	-	.	gene_id "intron_retention.462"; transcript_id "intron_retention.462"; gene_name "CUFF.1975"; flanks "74753976-,74773546^"; structure "0,1^2-"; splice_chain ",74753976^74773546-"; psi "0.431900";
chr12	juncbase	intron_retention	58019470	58019781	.	-	.	gene_id "intron_retention.463"; transcript_id "intron_retention.463"; gene_name "CUFF.1975"; flanks "58019470-,58019781^"; structure "0,1^2-"; splice_chain ",58019470^58019781-"; psi "0.941000";
chr6	juncbase	intron_retention	46644480	46645348	.	-	.	gene_id "intron_retention.464"; transcript_id "intron_retention.464"; gene_name "CUFF.1975"; flanks "46644480-,46645348^"; structure "0,1^2-"; splice_chain ",46644480^46645348-"; psi "0.502800";
chr8	juncbase	cassette	126963158	126948577	.	-	.	gene_id "cassette.344"; transcript_id "cassette.344"; gene_name "CUFF.1975"; flanks "126963158^,126948577-"; structure "0,1-2^"; splice_chain ",126958426-126958177^"; psi "0.906200";
chr15	juncbase	cassette	66644467	66641775	.	-	.	gene_id "cassette.345"; transcript_id "cassette.345"; gene_name "CUFF.1975"; flanks "66644467^,66641775-"; structure "0,1-2^"; splice_chain ",66643938-66643863^"; psi "0.471700";
chr2	juncbase	jcn_only_AD	101565942	101584743	.	-	.	gene_id "jcn_only_AD.489"; transcript_id "jcn_only_AD.489"; gene_name "CUFF.1975"; flanks "101565942-,101584743-"; structure "1^,2^"; splice_chain "101565942^,101582228^"; psi "0.132200";
chr19	juncbase	intron_retention	50306633	50308710	.	-	.	gene_id "intron_retention.465"; transcript_id "intron_retention.465"; gene_name "CUFF.1975"; flanks "50306633-,50308710^"; structure "0,1^2-"; splice_chain ",50306633^50308710-"; psi "0.024600";
chr5	juncbase	jcn_only_AA	52177853	52183647	.	-	.	gene_id "jcn_only_AA.391"; transcript_id "jcn_only_AA.391"; gene_name "CUFF.1975"; flanks "52177853^,52183647^"; structure "1-,2-"; splice_chain "52178712-,52183647-"; psi "0.729700";
chr2	juncbase	intron_retention	86400773	86398504	.	-	.	gene_id "intron_retention.466"; transcript_id "intron_retention.466"; gene_name "CUFF.1975"; flanks "86400773-,86398504^"; structure "0,1^2-"; splice_chain ",86400773^86398504-"; psi "0.191000";
chr16	juncbase	intron_retention	67970597	67970388	.	-	.	gene_id "intron_retention.467"; transcript_id "intron_retention.467"; gene_name "CUFF.1975"; flanks "67970597-,67970388^"; structure "0,1^2-"; splice_chain ",67970597^67970388-"; psi "0.519200";
chr16	juncbase	intron_retention	67223874	67223586	.	-	.	gene_id "intron_retention.468"; transcript_id "intron_retention.468"; gene_name "CUFF.1975"; flanks "67223874-,67223586^"; structure "0,1^2-"; splice_chain ",67223874^67223586-"; psi "0.603900";
chr12	juncbase	jcn_only_AA	53861627	53862564	.	-	.	gene_id "jcn_only_AA.392"; transcript_id "jcn_only_AA.392"; gene_name "CUFF.1975"; flanks "53861627^,53862564^"; structure "1-,2-"; splice_chain "53862561-,53862564-"; psi "0.138700";
chr7	juncbase	jcn_only_AA	150817832	150820881	.	-	.	gene_id "jcn_only_AA.393"; transcript_id "jcn_only_AA.393"; gene_name "CUFF.1975"; flanks "150817832^,150820881^"; structure "1-,2-"; splice_chain "150819812-,150820881-"; psi "0.047400";
chr6	juncbase	jcn_only_AA	112664980	112668494	.	-	.	gene_id "jcn_only_AA.394"; transcript_id "jcn_only_AA.394"; gene_name "CUFF.1975"; flanks "112664980^,112668494^"; structure "1-,2-"; splice_chain "112666241-,112668494-"; psi "0.676900";
chr14	juncbase	jcn_only_AD	104212710	104209160	.	-	.	gene_id "jcn_only_AD.490"; transcript_id "jcn_only_AD.490"; gene_name "CUFF.1975"; flanks "104212710-,104209160-"; structure "1^,2^"; splice_chain "104212710^,104210228^"; psi "0.683300";
chr7	juncbase	jcn_only_AD	73106976	73111935	.	-	.	gene_id "jcn_only_AD.491"; transcript_id "jcn_only_AD.491"; gene_name "CUFF.1975"; flanks "73106976-,73111935-"; structure "1^,2^"; splice_chain "73106976^,73107999^"; psi "0.904825";
chrX	juncbase	jcn_only_AA	20185707	20183079	.	-	.	gene_id "jcn_only_AA.395"; transcript_id "jcn_only_AA.395"; gene_name "CUFF.1975"; flanks "20185707^,20183079^"; structure "1-,2-"; splice_chain "20183178-,20183079-"; psi "0.242100";
chr7	juncbase	jcn_only_AD	37052904	36934622	.	-	.	gene_id "jcn_only_AD.492"; transcript_id "jcn_only_AD.492"; gene_name "CUFF.1975"; flanks "37052904-,36934622-"; structure "1^,2^"; splice_chain "37052904^,37025528^"; psi "0.762287";
chr2	juncbase	cassette	110962477	110959071	.	-	.	gene_id "cassette.346"; transcript_id "cassette.346"; gene_name "CUFF.1975"; flanks "110962477^,110959071-"; structure "0,1-2^"; splice_chain ",110960056-110959950^"; psi "0.360700";
chr19	juncbase	intron_retention	18119393	18119520	.	-	.	gene_id "intron_retention.469"; transcript_id "intron_retention.469"; gene_name "CUFF.1975"; flanks "18119393-,18119520^"; structure "0,1^2-"; splice_chain ",18119393^18119520-"; psi "0.311900";
chr12	juncbase	jcn_only_AA	351780	347176	.	-	.	gene_id "jcn_only_AA.396"; transcript_id "jcn_only_AA.396"; gene_name "CUFF.1975"; flanks "351780^,347176^"; structure "1-,2-"; splice_chain "347509-,347176-"; psi "0.618200";
chr19	juncbase	jcn_only_AD	16199930	16204346	.	-	.	gene_id "jcn_only_AD.493"; transcript_id "jcn_only_AD.493"; gene_name "CUFF.1975"; flanks "16199930-,16204346-"; structure "1^,2^"; splice_chain "16199930^,16203942^"; psi "0.693200";
chr1	juncbase	jcn_only_AD	2101043	2103494	.	-	.	gene_id "jcn_only_AD.494"; transcript_id "jcn_only_AD.494"; gene_name "CUFF.1975"; flanks "2101043-,2103494-"; structure "1^,2^"; splice_chain "2101043^,2103084^"; psi "0.935100";
chr11	juncbase	intron_retention	67766989	67766845	.	-	.	gene_id "intron_retention.470"; transcript_id "intron_retention.470"; gene_name "CUFF.1975"; flanks "67766989-,67766845^"; structure "0,1^2-"; splice_chain ",67766989^67766845-"; psi "0.850800";
chr1	juncbase	jcn_only_AD	22963195	22964103	.	-	.	gene_id "jcn_only_AD.495"; transcript_id "jcn_only_AD.495"; gene_name "CUFF.1975"; flanks "22963195-,22964103-"; structure "1^,2^"; splice_chain "22963195^,22963353^"; psi "0.402800";
chr17	juncbase	intron_retention	1616997	1616189	.	-	.	gene_id "intron_retention.471"; transcript_id "intron_retention.471"; gene_name "CUFF.1975"; flanks "1616997-,1616189^"; structure "0,1^2-"; splice_chain ",1616997^1616189-"; psi "0.640200";
chr5	juncbase	cassette	60224691	60217982	.	-	.	gene_id "cassette.347"; transcript_id "cassette.347"; gene_name "CUFF.1975"; flanks "60224691^,60217982-"; structure "0,1-2^"; splice_chain ",60220335-60220118^"; psi "0.242700";
chr11	juncbase	jcn_only_AD	94706662	94705357	.	-	.	gene_id "jcn_only_AD.496"; transcript_id "jcn_only_AD.496"; gene_name "CUFF.1975"; flanks "94706662-,94705357-"; structure "1^,2^"; splice_chain "94706662^,94706453^"; psi "0.367865";
chr17	juncbase	cassette	66287227	66274468	.	-	.	gene_id "cassette.348"; transcript_id "cassette.348"; gene_name "CUFF.1975"; flanks "66287227^,66274468-"; structure "0,1-2^"; splice_chain ",66279264-66279138^"; psi "0.306100";
chr2	juncbase	cassette	247538	242871	.	-	.	gene_id "cassette.349"; transcript_id "cassette.349"; gene_name "CUFF.1975"; flanks "247538^,242871-"; structure "0,1-2^"; splice_chain ",243562-243503^"; psi "0.108200";
chr2	juncbase	cassette	247538	234272	.	-	.	gene_id "cassette.350"; transcript_id "cassette.350"; gene_name "CUFF.1975"; flanks "247538^,234272-"; structure "0,1-2^"; splice_chain ",243562-243503^"; psi "0.108200";
chr11	juncbase	jcn_only_AD	6638590	6637734	.	-	.	gene_id "jcn_only_AD.497"; transcript_id "jcn_only_AD.497"; gene_name "CUFF.1975"; flanks "6638590-,6637734-"; structure "1^,2^"; splice_chain "6638590^,6637892^"; psi "0.099500";
chr14	juncbase	cassette	103187421	103188524	.	-	.	gene_id "cassette.351"; transcript_id "cassette.351"; gene_name "CUFF.1975"; flanks "103187421^,103188524-"; structure "0,1-2^"; splice_chain ",103187657-103187714^"; psi "0.244400";
chr19	juncbase	jcn_only_AA	6199491	6176454	.	-	.	gene_id "jcn_only_AA.397"; transcript_id "jcn_only_AA.397"; gene_name "CUFF.1975"; flanks "6199491^,6176454^"; structure "1-,2-"; splice_chain "6192040-,6176454-"; psi "0.219942";
chr10	juncbase	cassette	73921296	73892939	.	-	.	gene_id "cassette.352"; transcript_id "cassette.352"; gene_name "CUFF.1975"; flanks "73921296^,73892939-"; structure "0,1-2^"; splice_chain ",73912746-73912627^"; psi "0.791900";
chr9	juncbase	cassette	125047566	125054028	.	-	.	gene_id "cassette.353"; transcript_id "cassette.353"; gene_name "CUFF.1975"; flanks "125047566^,125054028-"; structure "0,1-2^"; splice_chain ",125048318-125048445^"; psi "0.173800";
chr11	juncbase	jcn_only_AD	8615291	8502161	.	-	.	gene_id "jcn_only_AD.498"; transcript_id "jcn_only_AD.498"; gene_name "CUFF.1975"; flanks "8615291-,8502161-"; structure "1^,2^"; splice_chain "8615291^,8587257^"; psi "0.611162";
chr11	juncbase	jcn_only_AD	8615630	8502161	.	-	.	gene_id "jcn_only_AD.499"; transcript_id "jcn_only_AD.499"; gene_name "CUFF.1975"; flanks "8615630-,8502161-"; structure "1^,2^"; splice_chain "8615630^,8587257^"; psi "0.766708";
chr6	juncbase	intron_retention	114291644	114281182	.	-	.	gene_id "intron_retention.472"; transcript_id "intron_retention.472"; gene_name "CUFF.1975"; flanks "114291644-,114281182^"; structure "0,1^2-"; splice_chain ",114291644^114281182-"; psi "0.398600";
chr19	juncbase	jcn_only_AA	11468415	11470283	.	-	.	gene_id "jcn_only_AA.398"; transcript_id "jcn_only_AA.398"; gene_name "CUFF.1975"; flanks "11468415^,11470283^"; structure "1-,2-"; splice_chain "11470208-,11470283-"; psi "0.202703";
chr7	juncbase	cassette	99057709	99032891	.	-	.	gene_id "cassette.354"; transcript_id "cassette.354"; gene_name "CUFF.1975"; flanks "99057709^,99032891-"; structure "0,1-2^"; splice_chain ",99039110-99039013^"; psi "0.287000";
chr6	juncbase	jcn_only_AA	32125497	32130345	.	-	.	gene_id "jcn_only_AA.399"; transcript_id "jcn_only_AA.399"; gene_name "CUFF.1975"; flanks "32125497^,32130345^"; structure "1-,2-"; splice_chain "32125617-,32130345-"; psi "0.007600";
chr19	juncbase	cassette	55087576	55098668	.	-	.	gene_id "cassette.355"; transcript_id "cassette.355"; gene_name "CUFF.1975"; flanks "55087576^,55098668-"; structure "0,1-2^"; splice_chain ",55098477-55098527^"; psi "0.530000";
chr16	juncbase	jcn_only_AA	56226528	56309843	.	-	.	gene_id "jcn_only_AA.400"; transcript_id "jcn_only_AA.400"; gene_name "CUFF.1975"; flanks "56226528^,56309843^"; structure "1-,2-"; splice_chain "56247184-,56309843-"; psi "0.120208";
chr16	juncbase	jcn_only_AA	56226528	56268925	.	-	.	gene_id "jcn_only_AA.401"; transcript_id "jcn_only_AA.401"; gene_name "CUFF.1975"; flanks "56226528^,56268925^"; structure "1-,2-"; splice_chain "56247184-,56268925-"; psi "0.215573";
chr22	juncbase	jcn_only_AA	37695347	37696194	.	-	.	gene_id "jcn_only_AA.402"; transcript_id "jcn_only_AA.402"; gene_name "CUFF.1975"; flanks "37695347^,37696194^"; structure "1-,2-"; splice_chain "37696111-,37696194-"; psi "0.724537";
chr22	juncbase	jcn_only_AA	37695347	37696948	.	-	.	gene_id "jcn_only_AA.403"; transcript_id "jcn_only_AA.403"; gene_name "CUFF.1975"; flanks "37695347^,37696948^"; structure "1-,2-"; splice_chain "37696111-,37696948-"; psi "0.850877";
chr6	juncbase	jcn_only_AD	46623771	46626699	.	-	.	gene_id "jcn_only_AD.500"; transcript_id "jcn_only_AD.500"; gene_name "CUFF.1975"; flanks "46623771-,46626699-"; structure "1^,2^"; splice_chain "46623771^,46626265^"; psi "0.610200";
chrX	juncbase	jcn_only_AD	20284682	20258723	.	-	.	gene_id "jcn_only_AD.501"; transcript_id "jcn_only_AD.501"; gene_name "CUFF.1975"; flanks "20284682-,20258723-"; structure "1^,2^"; splice_chain "20284682^,20259711^"; psi "0.658500";
chr7	juncbase	jcn_only_AA	75039743	75044163	.	-	.	gene_id "jcn_only_AA.404"; transcript_id "jcn_only_AA.404"; gene_name "CUFF.1975"; flanks "75039743^,75044163^"; structure "1-,2-"; splice_chain "75039889-,75044163-"; psi "0.785700";
chr8	juncbase	intron_retention	144356972	144357148	.	-	.	gene_id "intron_retention.473"; transcript_id "intron_retention.473"; gene_name "CUFF.1975"; flanks "144356972-,144357148^"; structure "0,1^2-"; splice_chain ",144356972^144357148-"; psi "0.900200";
chr22	juncbase	jcn_only_AD	29683123	29688126	.	-	.	gene_id "jcn_only_AD.502"; transcript_id "jcn_only_AD.502"; gene_name "CUFF.1975"; flanks "29683123-,29688126-"; structure "1^,2^"; splice_chain "29683123^,29687588^"; psi "0.030100";
chr16	juncbase	jcn_only_AA	67222923	67221041	.	-	.	gene_id "jcn_only_AA.405"; transcript_id "jcn_only_AA.405"; gene_name "CUFF.1975"; flanks "67222923^,67221041^"; structure "1-,2-"; splice_chain "67222843-,67221041-"; psi "0.133700";
chr12	juncbase	cassette	69207408	69222551	.	-	.	gene_id "cassette.356"; transcript_id "cassette.356"; gene_name "CUFF.1975"; flanks "69207408^,69222551-"; structure "0,1-2^"; splice_chain ",69218143-69218210^"; psi "0.831200";
chr12	juncbase	cassette	69214154	69222551	.	-	.	gene_id "cassette.357"; transcript_id "cassette.357"; gene_name "CUFF.1975"; flanks "69214154^,69222551-"; structure "0,1-2^"; splice_chain ",69218143-69218210^"; psi "0.831200";
chr15	juncbase	jcn_only_AD	77713079	77750746	.	-	.	gene_id "jcn_only_AD.503"; transcript_id "jcn_only_AD.503"; gene_name "CUFF.1975"; flanks "77713079-,77750746-"; structure "1^,2^"; splice_chain "77713079^,77750626^"; psi "0.434783";
chr15	juncbase	jcn_only_AD	77740153	77750746	.	-	.	gene_id "jcn_only_AD.504"; transcript_id "jcn_only_AD.504"; gene_name "CUFF.1975"; flanks "77740153-,77750746-"; structure "1^,2^"; splice_chain "77740153^,77750626^"; psi "0.187500";
chr15	juncbase	jcn_only_AD	77713346	77750746	.	-	.	gene_id "jcn_only_AD.505"; transcript_id "jcn_only_AD.505"; gene_name "CUFF.1975"; flanks "77713346-,77750746-"; structure "1^,2^"; splice_chain "77713346^,77750626^"; psi "0.964223";
chr15	juncbase	jcn_only_AD	77713436	77750746	.	-	.	gene_id "jcn_only_AD.506"; transcript_id "jcn_only_AD.506"; gene_name "CUFF.1975"; flanks "77713436-,77750746-"; structure "1^,2^"; splice_chain "77713436^,77750626^"; psi "0.645583";
chr7	juncbase	jcn_only_AD	73101425	73106926	.	-	.	gene_id "jcn_only_AD.507"; transcript_id "jcn_only_AD.507"; gene_name "CUFF.1975"; flanks "73101425-,73106926-"; structure "1^,2^"; splice_chain "73101425^,73105342^"; psi "0.154624";
chr7	juncbase	jcn_only_AD	73101230	73106926	.	-	.	gene_id "jcn_only_AD.508"; transcript_id "jcn_only_AD.508"; gene_name "CUFF.1975"; flanks "73101230-,73106926-"; structure "1^,2^"; splice_chain "73101230^,73105342^"; psi "0.281172";
chr1	juncbase	intron_retention	153925047	153924922	.	-	.	gene_id "intron_retention.474"; transcript_id "intron_retention.474"; gene_name "CUFF.1975"; flanks "153925047-,153924922^"; structure "0,1^2-"; splice_chain ",153925047^153924922-"; psi "0.188800";
chr11	juncbase	intron_retention	6636673	6636560	.	-	.	gene_id "intron_retention.475"; transcript_id "intron_retention.475"; gene_name "CUFF.1975"; flanks "6636673-,6636560^"; structure "0,1^2-"; splice_chain ",6636673^6636560-"; psi "0.319400";
chr16	juncbase	jcn_only_AA	19663412	19680482	.	-	.	gene_id "jcn_only_AA.406"; transcript_id "jcn_only_AA.406"; gene_name "CUFF.1975"; flanks "19663412^,19680482^"; structure "1-,2-"; splice_chain "19663677-,19680482-"; psi "0.584300";
chr2	juncbase	cassette	27721664	27722264	.	-	.	gene_id "cassette.358"; transcript_id "cassette.358"; gene_name "CUFF.1975"; flanks "27721664^,27722264-"; structure "0,1-2^"; splice_chain ",27722009-27722075^"; psi "0.274200";
chr10	juncbase	jcn_only_AD	25305621	25310671	.	-	.	gene_id "jcn_only_AD.509"; transcript_id "jcn_only_AD.509"; gene_name "CUFF.1975"; flanks "25305621-,25310671-"; structure "1^,2^"; splice_chain "25305621^,25305718^"; psi "0.500000";
chr7	juncbase	cassette	156685622	156626486	.	-	.	gene_id "cassette.359"; transcript_id "cassette.359"; gene_name "CUFF.1975"; flanks "156685622^,156626486-"; structure "0,1-2^"; splice_chain ",156629579-156629507^"; psi "0.937700";
chr16	juncbase	jcn_only_AD	3115495	3115785	.	-	.	gene_id "jcn_only_AD.510"; transcript_id "jcn_only_AD.510"; gene_name "CUFF.1975"; flanks "3115495-,3115785-"; structure "1^,2^"; splice_chain "3115495^,3115688^"; psi "0.542676";
chr16	juncbase	jcn_only_AD	3115656	3115785	.	-	.	gene_id "jcn_only_AD.511"; transcript_id "jcn_only_AD.511"; gene_name "CUFF.1975"; flanks "3115656-,3115785-"; structure "1^,2^"; splice_chain "3115656^,3115688^"; psi "0.472402";
chr4	juncbase	jcn_only_AD	6969151	6995911	.	-	.	gene_id "jcn_only_AD.512"; transcript_id "jcn_only_AD.512"; gene_name "CUFF.1975"; flanks "6969151-,6995911-"; structure "1^,2^"; splice_chain "6969151^,6989076^"; psi "0.666700";
chr2	juncbase	jcn_only_AD	1094096	1099091	.	-	.	gene_id "jcn_only_AD.513"; transcript_id "jcn_only_AD.513"; gene_name "CUFF.1975"; flanks "1094096-,1099091-"; structure "1^,2^"; splice_chain "1094096^,1098396^"; psi "0.744000";
chr22	juncbase	jcn_only_AD	45148507	45173042	.	-	.	gene_id "jcn_only_AD.514"; transcript_id "jcn_only_AD.514"; gene_name "CUFF.1975"; flanks "45148507-,45173042-"; structure "1^,2^"; splice_chain "45148507^,45148620^"; psi "0.896700";
chr11	juncbase	cassette	118403176	118404572	.	-	.	gene_id "cassette.360"; transcript_id "cassette.360"; gene_name "CUFF.1975"; flanks "118403176^,118404572-"; structure "0,1-2^"; splice_chain ",118403632-118403922^"; psi "0.858300";
chr11	juncbase	cassette	118403176	118404135	.	-	.	gene_id "cassette.361"; transcript_id "cassette.361"; gene_name "CUFF.1975"; flanks "118403176^,118404135-"; structure "0,1-2^"; splice_chain ",118403632-118403922^"; psi "0.858300";
chr17	juncbase	cassette	79358929	79354384	.	-	.	gene_id "cassette.362"; transcript_id "cassette.362"; gene_name "CUFF.1975"; flanks "79358929^,79354384-"; structure "0,1-2^"; splice_chain ",79358832-79358746^"; psi "0.873500";
chr17	juncbase	cassette	79358929	79355740	.	-	.	gene_id "cassette.363"; transcript_id "cassette.363"; gene_name "CUFF.1975"; flanks "79358929^,79355740-"; structure "0,1-2^"; splice_chain ",79358832-79358746^"; psi "0.873500";
chr6	juncbase	jcn_only_AA	128841404	128718833	.	-	.	gene_id "jcn_only_AA.407"; transcript_id "jcn_only_AA.407"; gene_name "CUFF.1975"; flanks "128841404^,128718833^"; structure "1-,2-"; splice_chain "128812994-,128718833-"; psi "0.962311";
chr6	juncbase	jcn_only_AA	128841404	128730477	.	-	.	gene_id "jcn_only_AA.408"; transcript_id "jcn_only_AA.408"; gene_name "CUFF.1975"; flanks "128841404^,128730477^"; structure "1-,2-"; splice_chain "128812994-,128730477-"; psi "0.822666";
chr19	juncbase	jcn_only_AD	33978156	33968996	.	-	.	gene_id "jcn_only_AD.515"; transcript_id "jcn_only_AD.515"; gene_name "CUFF.1975"; flanks "33978156-,33968996-"; structure "1^,2^"; splice_chain "33978156^,33977809^"; psi "0.970742";
chr19	juncbase	jcn_only_AD	33980902	33968996	.	-	.	gene_id "jcn_only_AD.516"; transcript_id "jcn_only_AD.516"; gene_name "CUFF.1975"; flanks "33980902-,33968996-"; structure "1^,2^"; splice_chain "33980902^,33977809^"; psi "0.846248";
chr17	juncbase	intron_retention	76993573	76993411	.	-	.	gene_id "intron_retention.476"; transcript_id "intron_retention.476"; gene_name "CUFF.1975"; flanks "76993573-,76993411^"; structure "0,1^2-"; splice_chain ",76993573^76993411-"; psi "0.779400";
chr19	juncbase	intron_retention	17448473	17448683	.	-	.	gene_id "intron_retention.477"; transcript_id "intron_retention.477"; gene_name "CUFF.1975"; flanks "17448473-,17448683^"; structure "0,1^2-"; splice_chain ",17448473^17448683-"; psi "0.136900";
chr11	juncbase	intron_retention	119058409	119058649	.	-	.	gene_id "intron_retention.478"; transcript_id "intron_retention.478"; gene_name "CUFF.1975"; flanks "119058409-,119058649^"; structure "0,1^2-"; splice_chain ",119058409^119058649-"; psi "0.042500";
chr17	juncbase	intron_retention	35307564	35311098	.	-	.	gene_id "intron_retention.479"; transcript_id "intron_retention.479"; gene_name "CUFF.1975"; flanks "35307564-,35311098^"; structure "0,1^2-"; splice_chain ",35307564^35311098-"; psi "0.153800";
chr14	juncbase	cassette	71201103	71200059	.	-	.	gene_id "cassette.364"; transcript_id "cassette.364"; gene_name "CUFF.1975"; flanks "71201103^,71200059-"; structure "0,1-2^"; splice_chain ",71200515-71200474^"; psi "0.812500";
chr21	juncbase	jcn_only_AD	43362256	43342194	.	-	.	gene_id "jcn_only_AD.517"; transcript_id "jcn_only_AD.517"; gene_name "CUFF.1975"; flanks "43362256-,43342194-"; structure "1^,2^"; splice_chain "43362256^,43346681^"; psi "0.945500";
chr2	juncbase	intron_retention	232258621	232259492	.	-	.	gene_id "intron_retention.480"; transcript_id "intron_retention.480"; gene_name "CUFF.1975"; flanks "232258621-,232259492^"; structure "0,1^2-"; splice_chain ",232258621^232259492-"; psi "0.636400";
chr16	juncbase	intron_retention	3115656	3115785	.	-	.	gene_id "intron_retention.481"; transcript_id "intron_retention.481"; gene_name "CUFF.1975"; flanks "3115656-,3115785^"; structure "0,1^2-"; splice_chain ",3115656^3115785-"; psi "0.472500";
chrX	juncbase	intron_retention	152989942	152988743	.	-	.	gene_id "intron_retention.482"; transcript_id "intron_retention.482"; gene_name "CUFF.1975"; flanks "152989942-,152988743^"; structure "0,1^2-"; splice_chain ",152989942^152988743-"; psi "0.746800";
chrX	juncbase	intron_retention	106185206	106184862	.	-	.	gene_id "intron_retention.483"; transcript_id "intron_retention.483"; gene_name "CUFF.1975"; flanks "106185206-,106184862^"; structure "0,1^2-"; splice_chain ",106185206^106184862-"; psi "0.551300";
chr19	juncbase	jcn_only_AD	33968953	33954968	.	-	.	gene_id "jcn_only_AD.518"; transcript_id "jcn_only_AD.518"; gene_name "CUFF.1975"; flanks "33968953-,33954968-"; structure "1^,2^"; splice_chain "33968953^,33967986^"; psi "0.037736";
chr19	juncbase	jcn_only_AD	33968952	33954968	.	-	.	gene_id "jcn_only_AD.519"; transcript_id "jcn_only_AD.519"; gene_name "CUFF.1975"; flanks "33968952-,33954968-"; structure "1^,2^"; splice_chain "33968952^,33967986^"; psi "0.994898";
chr1	juncbase	jcn_only_AD	155180206	155180339	.	-	.	gene_id "jcn_only_AD.520"; transcript_id "jcn_only_AD.520"; gene_name "CUFF.1975"; flanks "155180206-,155180339-"; structure "1^,2^"; splice_chain "155180206^,155180226^"; psi "0.491200";
chr11	juncbase	jcn_only_AA	119056337	119056631	.	-	.	gene_id "jcn_only_AA.409"; transcript_id "jcn_only_AA.409"; gene_name "CUFF.1975"; flanks "119056337^,119056631^"; structure "1-,2-"; splice_chain "119056558-,119056631-"; psi "0.656200";
chr12	juncbase	jcn_only_AD	26112081	26147970	.	-	.	gene_id "jcn_only_AD.521"; transcript_id "jcn_only_AD.521"; gene_name "CUFF.1975"; flanks "26112081-,26147970-"; structure "1^,2^"; splice_chain "26112081^,26126820^"; psi "0.702500";
chr6	juncbase	jcn_only_AA	128561180	128540241	.	-	.	gene_id "jcn_only_AA.410"; transcript_id "jcn_only_AA.410"; gene_name "CUFF.1975"; flanks "128561180^,128540241^"; structure "1-,2-"; splice_chain "128556749-,128540241-"; psi "0.907000";
chr15	juncbase	intron_retention	83357488	83357250	.	-	.	gene_id "intron_retention.484"; transcript_id "intron_retention.484"; gene_name "CUFF.1975"; flanks "83357488-,83357250^"; structure "0,1^2-"; splice_chain ",83357488^83357250-"; psi "0.988000";
chr3	juncbase	jcn_only_AD	132764864	132948114	.	-	.	gene_id "jcn_only_AD.522"; transcript_id "jcn_only_AD.522"; gene_name "CUFF.1975"; flanks "132764864-,132948114-"; structure "1^,2^"; splice_chain "132764864^,132911671^"; psi "0.160000";
chr7	juncbase	cassette	38948754	38908853	.	-	.	gene_id "cassette.365"; transcript_id "cassette.365"; gene_name "CUFF.1975"; flanks "38948754^,38908853-"; structure "0,1-2^"; splice_chain ",38937729-38937691^"; psi "0.902100";
chr22	juncbase	intron_retention	29684775	29687554	.	-	.	gene_id "intron_retention.485"; transcript_id "intron_retention.485"; gene_name "CUFF.1975"; flanks "29684775-,29687554^"; structure "0,1^2-"; splice_chain ",29684775^29687554-"; psi "0.164700";
chr3	juncbase	jcn_only_AA	73651505	73453546	.	-	.	gene_id "jcn_only_AA.411"; transcript_id "jcn_only_AA.411"; gene_name "CUFF.1975"; flanks "73651505^,73453546^"; structure "1-,2-"; splice_chain "73457411-,73453546-"; psi "0.151500";
chr5	juncbase	jcn_only_AA	83016608	82969368	.	-	.	gene_id "jcn_only_AA.412"; transcript_id "jcn_only_AA.412"; gene_name "CUFF.1975"; flanks "83016608^,82969368^"; structure "1-,2-"; splice_chain "82971156-,82969368-"; psi "0.346200";
chr6	juncbase	intron_retention	133055619	133055525	.	-	.	gene_id "intron_retention.486"; transcript_id "intron_retention.486"; gene_name "CUFF.1975"; flanks "133055619-,133055525^"; structure "0,1^2-"; splice_chain ",133055619^133055525-"; psi "0.666700";
chr12	juncbase	intron_retention	58018389	58018507	.	-	.	gene_id "intron_retention.487"; transcript_id "intron_retention.487"; gene_name "CUFF.1975"; flanks "58018389-,58018507^"; structure "0,1^2-"; splice_chain ",58018389^58018507-"; psi "0.971800";
chr11	juncbase	cassette	5686886	5685403	.	-	.	gene_id "cassette.366"; transcript_id "cassette.366"; gene_name "CUFF.1975"; flanks "5686886^,5685403-"; structure "0,1-2^"; splice_chain ",5686625-5686399^"; psi "0.693200";
chr19	juncbase	cassette	52901872	52905200	.	-	.	gene_id "cassette.367"; transcript_id "cassette.367"; gene_name "CUFF.1975"; flanks "52901872^,52905200-"; structure "0,1-2^"; splice_chain ",52904938-52905006^"; psi "0.980600";
chr2	juncbase	intron_retention	211082689	211081235	.	-	.	gene_id "intron_retention.488"; transcript_id "intron_retention.488"; gene_name "CUFF.1975"; flanks "211082689-,211081235^"; structure "0,1^2-"; splice_chain ",211082689^211081235-"; psi "0.764700";
chr6	juncbase	intron_retention	31935859	31936105	.	-	.	gene_id "intron_retention.489"; transcript_id "intron_retention.489"; gene_name "CUFF.1975"; flanks "31935859-,31936105^"; structure "0,1^2-"; splice_chain ",31935859^31936105-"; psi "0.441200";
chr7	juncbase	jcn_only_AA	156549087	156526951	.	-	.	gene_id "jcn_only_AA.413"; transcript_id "jcn_only_AA.413"; gene_name "CUFF.1975"; flanks "156549087^,156526951^"; structure "1-,2-"; splice_chain "156529309-,156526951-"; psi "0.965000";
chr2	juncbase	cassette	677289	675630	.	-	.	gene_id "cassette.368"; transcript_id "cassette.368"; gene_name "CUFF.1975"; flanks "677289^,675630-"; structure "0,1-2^"; splice_chain ",676238-675758^"; psi "0.782900";
chr2	juncbase	cassette	676574	675630	.	-	.	gene_id "cassette.369"; transcript_id "cassette.369"; gene_name "CUFF.1975"; flanks "676574^,675630-"; structure "0,1-2^"; splice_chain ",676238-675758^"; psi "0.782900";
chr8	juncbase	intron_retention	80965517	80963863	.	-	.	gene_id "intron_retention.490"; transcript_id "intron_retention.490"; gene_name "CUFF.1975"; flanks "80965517-,80963863^"; structure "0,1^2-"; splice_chain ",80965517^80963863-"; psi "0.096100";
chr7	juncbase	jcn_only_AD	107577538	107576101	.	-	.	gene_id "jcn_only_AD.523"; transcript_id "jcn_only_AD.523"; gene_name "CUFF.1975"; flanks "107577538-,107576101-"; structure "1^,2^"; splice_chain "107577538^,107576724^"; psi "0.906800";
chr8	juncbase	intron_retention	22012073	22011726	.	-	.	gene_id "intron_retention.491"; transcript_id "intron_retention.491"; gene_name "CUFF.1975"; flanks "22012073-,22011726^"; structure "0,1^2-"; splice_chain ",22012073^22011726-"; psi "0.100600";
chr17	juncbase	cassette	37604051	37599881	.	-	.	gene_id "cassette.370"; transcript_id "cassette.370"; gene_name "CUFF.1975"; flanks "37604051^,37599881-"; structure "0,1-2^"; splice_chain ",37601822-37601664^"; psi "0.742900";
chr17	juncbase	intron_retention	79895134	79894737	.	-	.	gene_id "intron_retention.492"; transcript_id "intron_retention.492"; gene_name "CUFF.1975"; flanks "79895134-,79894737^"; structure "0,1^2-"; splice_chain ",79895134^79894737-"; psi "0.375400";
chr11	juncbase	jcn_only_AD	10829721	10828928	.	-	.	gene_id "jcn_only_AD.524"; transcript_id "jcn_only_AD.524"; gene_name "CUFF.1975"; flanks "10829721-,10828928-"; structure "1^,2^"; splice_chain "10829721^,10829292^"; psi "0.564215";
chr8	juncbase	jcn_only_AD	144373780	144375142	.	-	.	gene_id "jcn_only_AD.525"; transcript_id "jcn_only_AD.525"; gene_name "CUFF.1975"; flanks "144373780-,144375142-"; structure "1^,2^"; splice_chain "144373780^,144373937^"; psi "0.245300";
chr1	juncbase	jcn_only_AD	156446804	156445029	.	-	.	gene_id "jcn_only_AD.526"; transcript_id "jcn_only_AD.526"; gene_name "CUFF.1975"; flanks "156446804-,156445029-"; structure "1^,2^"; splice_chain "156446804^,156446286^"; psi "0.238800";
chr17	juncbase	intron_retention	61908785	61908866	.	-	.	gene_id "intron_retention.493"; transcript_id "intron_retention.493"; gene_name "CUFF.1975"; flanks "61908785-,61908866^"; structure "0,1^2-"; splice_chain ",61908785^61908866-"; psi "0.042100";
chr7	juncbase	cassette	157647567	157649982	.	-	.	gene_id "cassette.371"; transcript_id "cassette.371"; gene_name "CUFF.1975"; flanks "157647567^,157649982-"; structure "0,1-2^"; splice_chain ",157648619-157648822^"; psi "0.147700";
chr10	juncbase	jcn_only_AA	70673035	70673147	.	-	.	gene_id "jcn_only_AA.414"; transcript_id "jcn_only_AA.414"; gene_name "CUFF.1975"; flanks "70673035^,70673147^"; structure "1-,2-"; splice_chain "70673106-,70673147-"; psi "0.292700";
chr17	juncbase	jcn_only_AD	6348662	6350783	.	-	.	gene_id "jcn_only_AD.527"; transcript_id "jcn_only_AD.527"; gene_name "CUFF.1975"; flanks "6348662-,6350783-"; structure "1^,2^"; splice_chain "6348662^,6348724^"; psi "0.295232";
chr2	juncbase	jcn_only_AD	219449444	219452309	.	-	.	gene_id "jcn_only_AD.528"; transcript_id "jcn_only_AD.528"; gene_name "CUFF.1975"; flanks "219449444-,219452309-"; structure "1^,2^"; splice_chain "219449444^,219452123^"; psi "0.731500";
chr10	juncbase	jcn_only_AD	804068	341564	.	-	.	gene_id "jcn_only_AD.529"; transcript_id "jcn_only_AD.529"; gene_name "CUFF.1975"; flanks "804068-,341564-"; structure "1^,2^"; splice_chain "804068^,804066^"; psi "0.968100";
chr4	juncbase	intron_retention	2932788	2932680	.	-	.	gene_id "intron_retention.494"; transcript_id "intron_retention.494"; gene_name "CUFF.1975"; flanks "2932788-,2932680^"; structure "0,1^2-"; splice_chain ",2932788^2932680-"; psi "0.346300";
chr17	juncbase	jcn_only_AD	56083871	56082402	.	-	.	gene_id "jcn_only_AD.530"; transcript_id "jcn_only_AD.530"; gene_name "CUFF.1975"; flanks "56083871-,56082402-"; structure "1^,2^"; splice_chain "56083871^,56082759^"; psi "0.670628";
chr17	juncbase	jcn_only_AD	56082775	56082402	.	-	.	gene_id "jcn_only_AD.531"; transcript_id "jcn_only_AD.531"; gene_name "CUFF.1975"; flanks "56082775-,56082402-"; structure "1^,2^"; splice_chain "56082775^,56082759^"; psi "0.678808";
chr5	juncbase	intron_retention	137515022	137515349	.	-	.	gene_id "intron_retention.495"; transcript_id "intron_retention.495"; gene_name "CUFF.1975"; flanks "137515022-,137515349^"; structure "0,1^2-"; splice_chain ",137515022^137515349-"; psi "0.145500";
chr9	juncbase	intron_retention	130931355	130929443	.	-	.	gene_id "intron_retention.496"; transcript_id "intron_retention.496"; gene_name "CUFF.1975"; flanks "130931355-,130929443^"; structure "0,1^2-"; splice_chain ",130931355^130929443-"; psi "0.349900";
chr17	juncbase	jcn_only_AA	15584179	15580594	.	-	.	gene_id "jcn_only_AA.415"; transcript_id "jcn_only_AA.415"; gene_name "CUFF.1975"; flanks "15584179^,15580594^"; structure "1-,2-"; splice_chain "15580996-,15580594-"; psi "0.767969";
chr17	juncbase	jcn_only_AA	15584179	15562190	.	-	.	gene_id "jcn_only_AA.416"; transcript_id "jcn_only_AA.416"; gene_name "CUFF.1975"; flanks "15584179^,15562190^"; structure "1-,2-"; splice_chain "15580996-,15562190-"; psi "0.846512";
chr17	juncbase	jcn_only_AA	15584179	15557745	.	-	.	gene_id "jcn_only_AA.417"; transcript_id "jcn_only_AA.417"; gene_name "CUFF.1975"; flanks "15584179^,15557745^"; structure "1-,2-"; splice_chain "15580996-,15557745-"; psi "0.815413";
chr17	juncbase	jcn_only_AA	15584179	15546130	.	-	.	gene_id "jcn_only_AA.418"; transcript_id "jcn_only_AA.418"; gene_name "CUFF.1975"; flanks "15584179^,15546130^"; structure "1-,2-"; splice_chain "15580996-,15546130-"; psi "0.893815";
chr12	juncbase	cassette	9723488	9725599	.	-	.	gene_id "cassette.372"; transcript_id "cassette.372"; gene_name "CUFF.1975"; flanks "9723488^,9725599-"; structure "0,1-2^"; splice_chain ",9724057-9724169^"; psi "0.425900";
chr7	juncbase	jcn_only_AD	111201907	111161505	.	-	.	gene_id "jcn_only_AD.532"; transcript_id "jcn_only_AD.532"; gene_name "CUFF.1975"; flanks "111201907-,111161505-"; structure "1^,2^"; splice_chain "111201907^,111172574^"; psi "0.484800";
chr19	juncbase	cassette	36142251	36149496	.	-	.	gene_id "cassette.373"; transcript_id "cassette.373"; gene_name "CUFF.1975"; flanks "36142251^,36149496-"; structure "0,1-2^"; splice_chain ",36145473-36145573^"; psi "0.586600";
chr19	juncbase	intron_retention	17447536	17447629	.	-	.	gene_id "intron_retention.497"; transcript_id "intron_retention.497"; gene_name "CUFF.1975"; flanks "17447536-,17447629^"; structure "0,1^2-"; splice_chain ",17447536^17447629-"; psi "0.898400";
chr7	juncbase	jcn_only_AA	73112024	73117709	.	-	.	gene_id "jcn_only_AA.419"; transcript_id "jcn_only_AA.419"; gene_name "CUFF.1975"; flanks "73112024^,73117709^"; structure "1-,2-"; splice_chain "73112162-,73117709-"; psi "0.160800";
chr7	juncbase	jcn_only_AA	22233533	22233073	.	-	.	gene_id "jcn_only_AA.420"; transcript_id "jcn_only_AA.420"; gene_name "CUFF.1975"; flanks "22233533^,22233073^"; structure "1-,2-"; splice_chain "22233395-,22233073-"; psi "0.775500";
chr7	juncbase	jcn_only_AA	127251999	127251730	.	-	.	gene_id "jcn_only_AA.421"; transcript_id "jcn_only_AA.421"; gene_name "CUFF.1975"; flanks "127251999^,127251730^"; structure "1-,2-"; splice_chain "127251902-,127251730-"; psi "0.889600";
chr10	juncbase	jcn_only_AA	124186547	124189140	.	-	.	gene_id "jcn_only_AA.422"; transcript_id "jcn_only_AA.422"; gene_name "CUFF.1975"; flanks "124186547^,124189140^"; structure "1-,2-"; splice_chain "124187792-,124189140-"; psi "0.354800";
chr12	juncbase	intron_retention	58018576	58018649	.	-	.	gene_id "intron_retention.498"; transcript_id "intron_retention.498"; gene_name "CUFF.1975"; flanks "58018576-,58018649^"; structure "0,1^2-"; splice_chain ",58018576^58018649-"; psi "0.976300";
chr11	juncbase	jcn_only_AA	118402586	118403125	.	-	.	gene_id "jcn_only_AA.423"; transcript_id "jcn_only_AA.423"; gene_name "CUFF.1975"; flanks "118402586^,118403125^"; structure "1-,2-"; splice_chain "118402961-,118403125-"; psi "0.749288";
chr11	juncbase	jcn_only_AA	118402586	118403005	.	-	.	gene_id "jcn_only_AA.424"; transcript_id "jcn_only_AA.424"; gene_name "CUFF.1975"; flanks "118402586^,118403005^"; structure "1-,2-"; splice_chain "118402961-,118403005-"; psi "0.583313";
chr5	juncbase	jcn_only_AD	134190852	134193047	.	-	.	gene_id "jcn_only_AD.533"; transcript_id "jcn_only_AD.533"; gene_name "CUFF.1975"; flanks "134190852-,134193047-"; structure "1^,2^"; splice_chain "134190852^,134191017^"; psi "0.756800";
chr15	juncbase	intron_retention	83331446	83331004	.	-	.	gene_id "intron_retention.499"; transcript_id "intron_retention.499"; gene_name "CUFF.1975"; flanks "83331446-,83331004^"; structure "0,1^2-"; splice_chain ",83331446^83331004-"; psi "0.327500";
chr14	juncbase	jcn_only_AD	75151157	75143455	.	-	.	gene_id "jcn_only_AD.534"; transcript_id "jcn_only_AD.534"; gene_name "CUFF.1975"; flanks "75151157-,75143455-"; structure "1^,2^"; splice_chain "75151157^,75149999^"; psi "0.790449";
chr3	juncbase	cassette	125639748	125647338	.	-	.	gene_id "cassette.374"; transcript_id "cassette.374"; gene_name "CUFF.1975"; flanks "125639748^,125647338-"; structure "0,1-2^"; splice_chain ",125643809-125643958^"; psi "0.991500";
chr8	juncbase	jcn_only_AD	81032050	80976828	.	-	.	gene_id "jcn_only_AD.535"; transcript_id "jcn_only_AD.535"; gene_name "CUFF.1975"; flanks "81032050-,80976828-"; structure "1^,2^"; splice_chain "81032050^,80992550^"; psi "0.140718";
chr8	juncbase	jcn_only_AD	81083660	80976828	.	-	.	gene_id "jcn_only_AD.536"; transcript_id "jcn_only_AD.536"; gene_name "CUFF.1975"; flanks "81083660-,80976828-"; structure "1^,2^"; splice_chain "81083660^,80992550^"; psi "0.094422";
chr8	juncbase	jcn_only_AD	81070672	80976828	.	-	.	gene_id "jcn_only_AD.537"; transcript_id "jcn_only_AD.537"; gene_name "CUFF.1975"; flanks "81070672-,80976828-"; structure "1^,2^"; splice_chain "81070672^,80992550^"; psi "0.078754";
chr8	juncbase	jcn_only_AD	81083442	80976828	.	-	.	gene_id "jcn_only_AD.538"; transcript_id "jcn_only_AD.538"; gene_name "CUFF.1975"; flanks "81083442-,80976828-"; structure "1^,2^"; splice_chain "81083442^,80992550^"; psi "0.062271";
chr8	juncbase	jcn_only_AD	81083256	80976828	.	-	.	gene_id "jcn_only_AD.539"; transcript_id "jcn_only_AD.539"; gene_name "CUFF.1975"; flanks "81083256-,80976828-"; structure "1^,2^"; splice_chain "81083256^,80992550^"; psi "0.016258";
chr8	juncbase	jcn_only_AD	81130704	80976828	.	-	.	gene_id "jcn_only_AD.540"; transcript_id "jcn_only_AD.540"; gene_name "CUFF.1975"; flanks "81130704-,80976828-"; structure "1^,2^"; splice_chain "81130704^,80992550^"; psi "0.062271";
chr17	juncbase	jcn_only_AA	5421066	5405192	.	-	.	gene_id "jcn_only_AA.425"; transcript_id "jcn_only_AA.425"; gene_name "CUFF.1975"; flanks "5421066^,5405192^"; structure "1-,2-"; splice_chain "5418837-,5405192-"; psi "0.109313";
chr17	juncbase	jcn_only_AA	5421066	5409297	.	-	.	gene_id "jcn_only_AA.426"; transcript_id "jcn_only_AA.426"; gene_name "CUFF.1975"; flanks "5421066^,5409297^"; structure "1-,2-"; splice_chain "5418837-,5409297-"; psi "0.012888";
chr1	juncbase	intron_retention	156909999	156909702	.	-	.	gene_id "intron_retention.500"; transcript_id "intron_retention.500"; gene_name "CUFF.1975"; flanks "156909999-,156909702^"; structure "0,1^2-"; splice_chain ",156909999^156909702-"; psi "0.092600";
chr14	juncbase	intron_retention	61518853	61545548	.	-	.	gene_id "intron_retention.501"; transcript_id "intron_retention.501"; gene_name "CUFF.1975"; flanks "61518853-,61545548^"; structure "0,1^2-"; splice_chain ",61518853^61545548-"; psi "0.659700";
chr1	juncbase	jcn_only_AD	245245463	245246744	.	-	.	gene_id "jcn_only_AD.541"; transcript_id "jcn_only_AD.541"; gene_name "CUFF.1975"; flanks "245245463-,245246744-"; structure "1^,2^"; splice_chain "245245463^,245245464^"; psi "0.001500";
chr6	juncbase	jcn_only_AD	43484465	43483928	.	-	.	gene_id "jcn_only_AD.542"; transcript_id "jcn_only_AD.542"; gene_name "CUFF.1975"; flanks "43484465-,43483928-"; structure "1^,2^"; splice_chain "43484465^,43484234^"; psi "0.111900";
chr12	juncbase	cassette	49349881	49334971	.	-	.	gene_id "cassette.375"; transcript_id "cassette.375"; gene_name "CUFF.1975"; flanks "49349881^,49334971-"; structure "0,1-2^"; splice_chain ",49347057-49346896^"; psi "0.761000";
chr2	juncbase	jcn_only_AD	61764697	61761038	.	-	.	gene_id "jcn_only_AD.543"; transcript_id "jcn_only_AD.543"; gene_name "CUFF.1975"; flanks "61764697-,61761038-"; structure "1^,2^"; splice_chain "61764697^,61763845^"; psi "0.847039";
chr2	juncbase	jcn_only_AD	61764154	61761038	.	-	.	gene_id "jcn_only_AD.544"; transcript_id "jcn_only_AD.544"; gene_name "CUFF.1975"; flanks "61764154-,61761038-"; structure "1^,2^"; splice_chain "61764154^,61763845^"; psi "0.945614";
chr2	juncbase	jcn_only_AD	61765627	61761038	.	-	.	gene_id "jcn_only_AD.545"; transcript_id "jcn_only_AD.545"; gene_name "CUFF.1975"; flanks "61765627-,61761038-"; structure "1^,2^"; splice_chain "61765627^,61763845^"; psi "0.645333";
chr17	juncbase	jcn_only_AD	6348724	6350783	.	-	.	gene_id "jcn_only_AD.546"; transcript_id "jcn_only_AD.546"; gene_name "CUFF.1975"; flanks "6348724-,6350783-"; structure "1^,2^"; splice_chain "6348724^,6349507^"; psi "0.930646";
chr17	juncbase	jcn_only_AD	6348662	6350783	.	-	.	gene_id "jcn_only_AD.547"; transcript_id "jcn_only_AD.547"; gene_name "CUFF.1975"; flanks "6348662-,6350783-"; structure "1^,2^"; splice_chain "6348662^,6349507^"; psi "0.848971";
chr3	juncbase	intron_retention	97662414	97663678	.	-	.	gene_id "intron_retention.502"; transcript_id "intron_retention.502"; gene_name "CUFF.1975"; flanks "97662414-,97663678^"; structure "0,1^2-"; splice_chain ",97662414^97663678-"; psi "0.524400";
chr12	juncbase	jcn_only_AA	25679703	25673009	.	-	.	gene_id "jcn_only_AA.427"; transcript_id "jcn_only_AA.427"; gene_name "CUFF.1975"; flanks "25679703^,25673009^"; structure "1-,2-"; splice_chain "25679152-,25673009-"; psi "0.297500";
chr11	juncbase	cassette	10823596	10822634	.	-	.	gene_id "cassette.376"; transcript_id "cassette.376"; gene_name "CUFF.1975"; flanks "10823596^,10822634-"; structure "0,1-2^"; splice_chain ",10823321-10823208^"; psi "0.616400";
chr6	juncbase	jcn_only_AD	128563666	128561295	.	-	.	gene_id "jcn_only_AD.548"; transcript_id "jcn_only_AD.548"; gene_name "CUFF.1975"; flanks "128563666-,128561295-"; structure "1^,2^"; splice_chain "128563666^,128562368^"; psi "0.906800";
chr8	juncbase	intron_retention	56663523	56657680	.	-	.	gene_id "intron_retention.503"; transcript_id "intron_retention.503"; gene_name "CUFF.1975"; flanks "56663523-,56657680^"; structure "0,1^2-"; splice_chain ",56663523^56657680-"; psi "0.184400";
chr19	juncbase	jcn_only_AD	33878796	33878387	.	-	.	gene_id "jcn_only_AD.549"; transcript_id "jcn_only_AD.549"; gene_name "CUFF.1975"; flanks "33878796-,33878387-"; structure "1^,2^"; splice_chain "33878796^,33878561^"; psi "0.952300";
chr9	juncbase	cassette	95588860	95599059	.	-	.	gene_id "cassette.377"; transcript_id "cassette.377"; gene_name "CUFF.1975"; flanks "95588860^,95599059-"; structure "0,1-2^"; splice_chain ",95591220-95591445^"; psi "0.860300";
chr17	juncbase	jcn_only_AA	80436794	80438283	.	-	.	gene_id "jcn_only_AA.428"; transcript_id "jcn_only_AA.428"; gene_name "CUFF.1975"; flanks "80436794^,80438283^"; structure "1-,2-"; splice_chain "80437814-,80438283-"; psi "0.365979";
chr17	juncbase	jcn_only_AA	80436794	80438958	.	-	.	gene_id "jcn_only_AA.429"; transcript_id "jcn_only_AA.429"; gene_name "CUFF.1975"; flanks "80436794^,80438958^"; structure "1-,2-"; splice_chain "80437814-,80438958-"; psi "0.975046";
chr12	juncbase	intron_retention	56577959	56577714	.	-	.	gene_id "intron_retention.504"; transcript_id "intron_retention.504"; gene_name "CUFF.1975"; flanks "56577959-,56577714^"; structure "0,1^2-"; splice_chain ",56577959^56577714-"; psi "0.218200";
chr15	juncbase	jcn_only_AA	83334209	83333695	.	-	.	gene_id "jcn_only_AA.430"; transcript_id "jcn_only_AA.430"; gene_name "CUFF.1975"; flanks "83334209^,83333695^"; structure "1-,2-"; splice_chain "83334055-,83333695-"; psi "0.810800";
chr15	juncbase	jcn_only_AD	83378346	83358205	.	-	.	gene_id "jcn_only_AD.550"; transcript_id "jcn_only_AD.550"; gene_name "CUFF.1975"; flanks "83378346-,83358205-"; structure "1^,2^"; splice_chain "83378346^,83366609^"; psi "0.981793";
chr15	juncbase	jcn_only_AD	83377524	83358205	.	-	.	gene_id "jcn_only_AD.551"; transcript_id "jcn_only_AD.551"; gene_name "CUFF.1975"; flanks "83377524-,83358205-"; structure "1^,2^"; splice_chain "83377524^,83366609^"; psi "0.462733";
chr14	juncbase	intron_retention	52473255	52472567	.	-	.	gene_id "intron_retention.505"; transcript_id "intron_retention.505"; gene_name "CUFF.1975"; flanks "52473255-,52472567^"; structure "0,1^2-"; splice_chain ",52473255^52472567-"; psi "0.138300";
chr15	juncbase	jcn_only_AA	84873178	84871759	.	-	.	gene_id "jcn_only_AA.431"; transcript_id "jcn_only_AA.431"; gene_name "CUFF.1975"; flanks "84873178^,84871759^"; structure "1-,2-"; splice_chain "84871772-,84871759-"; psi "0.040200";
chr6	juncbase	intron_retention	33243843	33243953	.	-	.	gene_id "intron_retention.506"; transcript_id "intron_retention.506"; gene_name "CUFF.1975"; flanks "33243843-,33243953^"; structure "0,1^2-"; splice_chain ",33243843^33243953-"; psi "0.050400";
chr6	juncbase	jcn_only_AD	145119126	145124172	.	-	.	gene_id "jcn_only_AD.552"; transcript_id "jcn_only_AD.552"; gene_name "CUFF.1975"; flanks "145119126-,145124172-"; structure "1^,2^"; splice_chain "145119126^,145120609^"; psi "0.909900";
chr19	juncbase	intron_retention	49314241	49311493	.	-	.	gene_id "intron_retention.507"; transcript_id "intron_retention.507"; gene_name "CUFF.1975"; flanks "49314241-,49311493^"; structure "0,1^2-"; splice_chain ",49314241^49311493-"; psi "0.113600";
chr18	juncbase	jcn_only_AD	12012214	12014264	.	-	.	gene_id "jcn_only_AD.553"; transcript_id "jcn_only_AD.553"; gene_name "CUFF.1975"; flanks "12012214-,12014264-"; structure "1^,2^"; splice_chain "12012214^,12012348^"; psi "0.804100";
chr2	juncbase	intron_retention	242447920	242441123	.	-	.	gene_id "intron_retention.508"; transcript_id "intron_retention.508"; gene_name "CUFF.1975"; flanks "242447920-,242441123^"; structure "0,1^2-"; splice_chain ",242447920^242441123-"; psi "0.337200";
chr11	juncbase	intron_retention	117070148	117073718	.	-	.	gene_id "intron_retention.509"; transcript_id "intron_retention.509"; gene_name "CUFF.1975"; flanks "117070148-,117073718^"; structure "0,1^2-"; splice_chain ",117070148^117073718-"; psi "0.835900";
chr22	juncbase	jcn_only_AA	29694885	29695224	.	-	.	gene_id "jcn_only_AA.432"; transcript_id "jcn_only_AA.432"; gene_name "CUFF.1975"; flanks "29694885^,29695224^"; structure "1-,2-"; splice_chain "29695185-,29695224-"; psi "0.597300";
chr2	juncbase	jcn_only_AA	242577139	242590425	.	-	.	gene_id "jcn_only_AA.433"; transcript_id "jcn_only_AA.433"; gene_name "CUFF.1975"; flanks "242577139^,242590425^"; structure "1-,2-"; splice_chain "242577676-,242590425-"; psi "0.943000";
chr14	juncbase	jcn_only_AA	106944968	106950171	.	-	.	gene_id "jcn_only_AA.434"; transcript_id "jcn_only_AA.434"; gene_name "CUFF.1975"; flanks "106944968^,106950171^"; structure "1-,2-"; splice_chain "106946394-,106950171-"; psi "0.264700";
chr2	juncbase	jcn_only_AA	219457430	219458892	.	-	.	gene_id "jcn_only_AA.435"; transcript_id "jcn_only_AA.435"; gene_name "CUFF.1975"; flanks "219457430^,219458892^"; structure "1-,2-"; splice_chain "219458831-,219458892-"; psi "0.692059";
chr4	juncbase	jcn_only_AA	70518906	70513413	.	-	.	gene_id "jcn_only_AA.436"; transcript_id "jcn_only_AA.436"; gene_name "CUFF.1975"; flanks "70518906^,70513413^"; structure "1-,2-"; splice_chain "70513416-,70513413-"; psi "0.762800";
chr2	juncbase	jcn_only_AD	175711043	175689246	.	-	.	gene_id "jcn_only_AD.554"; transcript_id "jcn_only_AD.554"; gene_name "CUFF.1975"; flanks "175711043-,175689246-"; structure "1^,2^"; splice_chain "175711043^,175711037^"; psi "0.317100";
chr11	juncbase	cassette	3423959	3424823	.	-	.	gene_id "cassette.378"; transcript_id "cassette.378"; gene_name "CUFF.1975"; flanks "3423959^,3424823-"; structure "0,1-2^"; splice_chain ",3424145-3424186^"; psi "0.261300";
chrX	juncbase	jcn_only_AA	20193282	20190986	.	-	.	gene_id "jcn_only_AA.437"; transcript_id "jcn_only_AA.437"; gene_name "CUFF.1975"; flanks "20193282^,20190986^"; structure "1-,2-"; splice_chain "20190989-,20190986-"; psi "0.467700";
chr5	juncbase	jcn_only_AA	36163858	36177067	.	-	.	gene_id "jcn_only_AA.438"; transcript_id "jcn_only_AA.438"; gene_name "CUFF.1975"; flanks "36163858^,36177067^"; structure "1-,2-"; splice_chain "36166621-,36177067-"; psi "0.677800";
chr2	juncbase	intron_retention	27730178	27730548	.	-	.	gene_id "intron_retention.510"; transcript_id "intron_retention.510"; gene_name "CUFF.1975"; flanks "27730178-,27730548^"; structure "0,1^2-"; splice_chain ",27730178^27730548-"; psi "0.399100";
chr10	juncbase	jcn_only_AA	78787581	78778857	.	-	.	gene_id "jcn_only_AA.439"; transcript_id "jcn_only_AA.439"; gene_name "CUFF.1975"; flanks "78787581^,78778857^"; structure "1-,2-"; splice_chain "78782694-,78778857-"; psi "0.642900";
chr11	juncbase	intron_retention	10829824	10828928	.	-	.	gene_id "intron_retention.511"; transcript_id "intron_retention.511"; gene_name "CUFF.1975"; flanks "10829824-,10828928^"; structure "0,1^2-"; splice_chain ",10829824^10828928-"; psi "0.926100";
chr8	juncbase	jcn_only_AA	2453716	2452791	.	-	.	gene_id "jcn_only_AA.440"; transcript_id "jcn_only_AA.440"; gene_name "CUFF.1975"; flanks "2453716^,2452791^"; structure "1-,2-"; splice_chain "2452794-,2452791-"; psi "0.407400";
chr9	juncbase	jcn_only_AD	15267912	15211395	.	-	.	gene_id "jcn_only_AD.555"; transcript_id "jcn_only_AD.555"; gene_name "CUFF.1975"; flanks "15267912-,15211395-"; structure "1^,2^"; splice_chain "15267912^,15214137^"; psi "0.017100";
chr14	juncbase	intron_retention	104205016	104204197	.	-	.	gene_id "intron_retention.512"; transcript_id "intron_retention.512"; gene_name "CUFF.1975"; flanks "104205016-,104204197^"; structure "0,1^2-"; splice_chain ",104205016^104204197-"; psi "0.057700";
chr2	juncbase	cassette	242594062	242598523	.	-	.	gene_id "cassette.379"; transcript_id "cassette.379"; gene_name "CUFF.1975"; flanks "242594062^,242598523-"; structure "0,1-2^"; splice_chain ",242594686-242594758^"; psi "0.870800";
chr2	juncbase	cassette	242594062	242606060	.	-	.	gene_id "cassette.380"; transcript_id "cassette.380"; gene_name "CUFF.1975"; flanks "242594062^,242606060-"; structure "0,1-2^"; splice_chain ",242594686-242594758^"; psi "0.870800";
chr7	juncbase	cassette	110603556	110303777	.	-	.	gene_id "cassette.381"; transcript_id "cassette.381"; gene_name "CUFF.1975"; flanks "110603556^,110303777-"; structure "0,1-2^"; splice_chain ",110526751-110526649^"; psi "0.946500";
chr10	juncbase	cassette	96972697	96979648	.	-	.	gene_id "cassette.382"; transcript_id "cassette.382"; gene_name "CUFF.1975"; flanks "96972697^,96979648-"; structure "0,1-2^"; splice_chain ",96974609-96974732^"; psi "0.825200";
chr3	juncbase	intron_retention	33434055	33431860	.	-	.	gene_id "intron_retention.513"; transcript_id "intron_retention.513"; gene_name "CUFF.1975"; flanks "33434055-,33431860^"; structure "0,1^2-"; splice_chain ",33434055^33431860-"; psi "0.122200";
chr3	juncbase	jcn_only_AA	27332753	27329234	.	-	.	gene_id "jcn_only_AA.441"; transcript_id "jcn_only_AA.441"; gene_name "CUFF.1975"; flanks "27332753^,27329234^"; structure "1-,2-"; splice_chain "27332245-,27329234-"; psi "0.800000";
chr7	juncbase	cassette	107220746	107224327	.	-	.	gene_id "cassette.383"; transcript_id "cassette.383"; gene_name "CUFF.1975"; flanks "107220746^,107224327-"; structure "0,1-2^"; splice_chain ",107221204-107221309^"; psi "0.752600";
chr3	juncbase	intron_retention	119207834	119209398	.	-	.	gene_id "intron_retention.514"; transcript_id "intron_retention.514"; gene_name "CUFF.1975"; flanks "119207834-,119209398^"; structure "0,1^2-"; splice_chain ",119207834^119209398-"; psi "0.066700";
chr19	juncbase	intron_retention	1438891	1439960	.	-	.	gene_id "intron_retention.515"; transcript_id "intron_retention.515"; gene_name "CUFF.1975"; flanks "1438891-,1439960^"; structure "0,1^2-"; splice_chain ",1438891^1439960-"; psi "0.849500";
chr10	juncbase	jcn_only_AD	46143742	46135411	.	-	.	gene_id "jcn_only_AD.556"; transcript_id "jcn_only_AD.556"; gene_name "CUFF.1975"; flanks "46143742-,46135411-"; structure "1^,2^"; splice_chain "46143742^,46135689^"; psi "0.877200";
chr17	juncbase	intron_retention	1944475	1944775	.	-	.	gene_id "intron_retention.516"; transcript_id "intron_retention.516"; gene_name "CUFF.1975"; flanks "1944475-,1944775^"; structure "0,1^2-"; splice_chain ",1944475^1944775-"; psi "0.115300";
chr9	juncbase	cassette	130952967	130950213	.	-	.	gene_id "cassette.384"; transcript_id "cassette.384"; gene_name "CUFF.1975"; flanks "130952967^,130950213-"; structure "0,1-2^"; splice_chain ",130952723-130952608^"; psi "0.893700";
chr9	juncbase	cassette	130952967	130948055	.	-	.	gene_id "cassette.385"; transcript_id "cassette.385"; gene_name "CUFF.1975"; flanks "130952967^,130948055-"; structure "0,1-2^"; splice_chain ",130952723-130952608^"; psi "0.893700";
chr2	juncbase	jcn_only_AD	133070568	133074682	.	-	.	gene_id "jcn_only_AD.557"; transcript_id "jcn_only_AD.557"; gene_name "CUFF.1975"; flanks "133070568-,133074682-"; structure "1^,2^"; splice_chain "133070568^,133070572^"; psi "0.843100";
chr14	juncbase	jcn_only_AD	24563463	24563975	.	-	.	gene_id "jcn_only_AD.558"; transcript_id "jcn_only_AD.558"; gene_name "CUFF.1975"; flanks "24563463-,24563975-"; structure "1^,2^"; splice_chain "24563463^,24563643^"; psi "0.055200";
chr4	juncbase	cassette	74450897	74447585	.	-	.	gene_id "cassette.386"; transcript_id "cassette.386"; gene_name "CUFF.1975"; flanks "74450897^,74447585-"; structure "0,1-2^"; splice_chain ",74448007-74447906^"; psi "0.335300";
chr4	juncbase	jcn_only_AA	2935294	2934904	.	-	.	gene_id "jcn_only_AA.442"; transcript_id "jcn_only_AA.442"; gene_name "CUFF.1975"; flanks "2935294^,2934904^"; structure "1-,2-"; splice_chain "2934936-,2934904-"; psi "0.092900";
chr6	juncbase	cassette	31928871	31929324	.	-	.	gene_id "cassette.387"; transcript_id "cassette.387"; gene_name "CUFF.1975"; flanks "31928871^,31929324-"; structure "0,1-2^"; splice_chain ",31928973-31929163^"; psi "0.666700";
chr7	juncbase	intron_retention	107220746	107221091	.	-	.	gene_id "intron_retention.517"; transcript_id "intron_retention.517"; gene_name "CUFF.1975"; flanks "107220746-,107221091^"; structure "0,1^2-"; splice_chain ",107220746^107221091-"; psi "0.333300";
chr14	juncbase	intron_retention	77924325	77925959	.	-	.	gene_id "intron_retention.518"; transcript_id "intron_retention.518"; gene_name "CUFF.1975"; flanks "77924325-,77925959^"; structure "0,1^2-"; splice_chain ",77924325^77925959-"; psi "0.666700";
chr11	juncbase	jcn_only_AD	8615291	8496363	.	-	.	gene_id "jcn_only_AD.559"; transcript_id "jcn_only_AD.559"; gene_name "CUFF.1975"; flanks "8615291-,8496363-"; structure "1^,2^"; splice_chain "8615291^,8502081^"; psi "0.882683";
chr11	juncbase	jcn_only_AD	8588798	8496363	.	-	.	gene_id "jcn_only_AD.560"; transcript_id "jcn_only_AD.560"; gene_name "CUFF.1975"; flanks "8588798-,8496363-"; structure "1^,2^"; splice_chain "8588798^,8502081^"; psi "0.652958";
chr7	juncbase	intron_retention	107575860	107572938	.	-	.	gene_id "intron_retention.519"; transcript_id "intron_retention.519"; gene_name "CUFF.1975"; flanks "107575860-,107572938^"; structure "0,1^2-"; splice_chain ",107575860^107572938-"; psi "0.493400";
chr14	juncbase	intron_retention	75179636	75152363	.	-	.	gene_id "intron_retention.520"; transcript_id "intron_retention.520"; gene_name "CUFF.1975"; flanks "75179636-,75152363^"; structure "0,1^2-"; splice_chain ",75179636^75152363-"; psi "0.605300";
chr22	juncbase	cassette	45204318	45210552	.	-	.	gene_id "cassette.388"; transcript_id "cassette.388"; gene_name "CUFF.1975"; flanks "45204318^,45210552-"; structure "0,1-2^"; splice_chain ",45204886-45204978^"; psi "0.272900";
chr2	juncbase	jcn_only_AA	109089355	109091991	.	-	.	gene_id "jcn_only_AA.443"; transcript_id "jcn_only_AA.443"; gene_name "CUFF.1975"; flanks "109089355^,109091991^"; structure "1-,2-"; splice_chain "109091245-,109091991-"; psi "0.260000";
chr11	juncbase	intron_retention	3427840	3428852	.	-	.	gene_id "intron_retention.521"; transcript_id "intron_retention.521"; gene_name "CUFF.1975"; flanks "3427840-,3428852^"; structure "0,1^2-"; splice_chain ",3427840^3428852-"; psi "0.470800";
chr2	juncbase	intron_retention	177042743	177042549	.	-	.	gene_id "intron_retention.522"; transcript_id "intron_retention.522"; gene_name "CUFF.1975"; flanks "177042743-,177042549^"; structure "0,1^2-"; splice_chain ",177042743^177042549-"; psi "0.795000";
chr14	juncbase	cassette	69542062	69522328	.	-	.	gene_id "cassette.389"; transcript_id "cassette.389"; gene_name "CUFF.1975"; flanks "69542062^,69522328-"; structure "0,1-2^"; splice_chain ",69529228-69529101^"; psi "0.949200";
chr14	juncbase	jcn_only_AA	60027837	60018140	.	-	.	gene_id "jcn_only_AA.444"; transcript_id "jcn_only_AA.444"; gene_name "CUFF.1975"; flanks "60027837^,60018140^"; structure "1-,2-"; splice_chain "60018154-,60018140-"; psi "0.728900";
chr2	juncbase	jcn_only_AD	177042743	177042549	.	-	.	gene_id "jcn_only_AD.561"; transcript_id "jcn_only_AD.561"; gene_name "CUFF.1975"; flanks "177042743-,177042549-"; structure "1^,2^"; splice_chain "177042743^,177042731^"; psi "0.485300";
chr6	juncbase	jcn_only_AD	112558117	112604256	.	-	.	gene_id "jcn_only_AD.562"; transcript_id "jcn_only_AD.562"; gene_name "CUFF.1975"; flanks "112558117-,112604256-"; structure "1^,2^"; splice_chain "112558117^,112600440^"; psi "0.393300";
chr6	juncbase	cassette	116979966	116973355	.	-	.	gene_id "cassette.390"; transcript_id "cassette.390"; gene_name "CUFF.1975"; flanks "116979966^,116973355-"; structure "0,1-2^"; splice_chain ",116978015-116977847^"; psi "0.714300";
chr2	juncbase	jcn_only_AA	175689162	175677210	.	-	.	gene_id "jcn_only_AA.445"; transcript_id "jcn_only_AA.445"; gene_name "CUFF.1975"; flanks "175689162^,175677210^"; structure "1-,2-"; splice_chain "175686507-,175677210-"; psi "0.733700";
chr16	juncbase	jcn_only_AA	70399034	70399988	.	-	.	gene_id "jcn_only_AA.446"; transcript_id "jcn_only_AA.446"; gene_name "CUFF.1975"; flanks "70399034^,70399988^"; structure "1-,2-"; splice_chain "70399836-,70399988-"; psi "0.710200";
chr19	juncbase	cassette	14883154	14876382	.	-	.	gene_id "cassette.391"; transcript_id "cassette.391"; gene_name "CUFF.1975"; flanks "14883154^,14876382-"; structure "0,1-2^"; splice_chain ",14876616-14876470^"; psi "0.683800";
chr19	juncbase	intron_retention	52917621	52918192	.	-	.	gene_id "intron_retention.523"; transcript_id "intron_retention.523"; gene_name "CUFF.1975"; flanks "52917621-,52918192^"; structure "0,1^2-"; splice_chain ",52917621^52918192-"; psi "0.210500";
chr17	juncbase	intron_retention	35378313	35413901	.	-	.	gene_id "intron_retention.524"; transcript_id "intron_retention.524"; gene_name "CUFF.1975"; flanks "35378313-,35413901^"; structure "0,1^2-"; splice_chain ",35378313^35413901-"; psi "0.555600";
chr12	juncbase	intron_retention	72080100	72080440	.	-	.	gene_id "intron_retention.525"; transcript_id "intron_retention.525"; gene_name "CUFF.1975"; flanks "72080100-,72080440^"; structure "0,1^2-"; splice_chain ",72080100^72080440-"; psi "0.488900";
chr5	juncbase	cassette	54456224	54459883	.	-	.	gene_id "cassette.392"; transcript_id "cassette.392"; gene_name "CUFF.1975"; flanks "54456224^,54459883-"; structure "0,1-2^"; splice_chain ",54456822-54457083^"; psi "0.567000";
chr9	juncbase	intron_retention	139744589	139744958	.	-	.	gene_id "intron_retention.526"; transcript_id "intron_retention.526"; gene_name "CUFF.1975"; flanks "139744589-,139744958^"; structure "0,1^2-"; splice_chain ",139744589^139744958-"; psi "0.082400";
chr17	juncbase	intron_retention	57776232	57775339	.	-	.	gene_id "intron_retention.527"; transcript_id "intron_retention.527"; gene_name "CUFF.1975"; flanks "57776232-,57775339^"; structure "0,1^2-"; splice_chain ",57776232^57775339-"; psi "0.348500";
chr5	juncbase	jcn_only_AD	137514891	137515349	.	-	.	gene_id "jcn_only_AD.563"; transcript_id "jcn_only_AD.563"; gene_name "CUFF.1975"; flanks "137514891-,137515349-"; structure "1^,2^"; splice_chain "137514891^,137515022^"; psi "0.383900";
chrX	juncbase	cassette	53571990	53570929	.	-	.	gene_id "cassette.393"; transcript_id "cassette.393"; gene_name "CUFF.1975"; flanks "53571990^,53570929-"; structure "0,1-2^"; splice_chain ",53571723-53571521^"; psi "0.585400";
chr11	juncbase	jcn_only_AD	117070148	117073718	.	-	.	gene_id "jcn_only_AD.564"; transcript_id "jcn_only_AD.564"; gene_name "CUFF.1975"; flanks "117070148-,117073718-"; structure "1^,2^"; splice_chain "117070148^,117070545^"; psi "0.112450";
chr2	juncbase	intron_retention	46842076	46840924	.	-	.	gene_id "intron_retention.528"; transcript_id "intron_retention.528"; gene_name "CUFF.1975"; flanks "46842076-,46840924^"; structure "0,1^2-"; splice_chain ",46842076^46840924-"; psi "0.025000";
chr10	juncbase	jcn_only_AD	69866558	69902697	.	-	.	gene_id "jcn_only_AD.565"; transcript_id "jcn_only_AD.565"; gene_name "CUFF.1975"; flanks "69866558-,69902697-"; structure "1^,2^"; splice_chain "69866558^,69882097^"; psi "0.015700";
chr2	juncbase	cassette	220094622	220096650	.	-	.	gene_id "cassette.394"; transcript_id "cassette.394"; gene_name "CUFF.1975"; flanks "220094622^,220096650-"; structure "0,1-2^"; splice_chain ",220094950-220095127^"; psi "0.827500";
chr11	juncbase	jcn_only_AA	119291579	119291045	.	-	.	gene_id "jcn_only_AA.447"; transcript_id "jcn_only_AA.447"; gene_name "CUFF.1975"; flanks "119291579^,119291045^"; structure "1-,2-"; splice_chain "119291088-,119291045-"; psi "0.490975";
chr22	juncbase	intron_retention	50920192	50920266	.	-	.	gene_id "intron_retention.529"; transcript_id "intron_retention.529"; gene_name "CUFF.1975"; flanks "50920192-,50920266^"; structure "0,1^2-"; splice_chain ",50920192^50920266-"; psi "0.170700";
chr2	juncbase	cassette	169711970	169713200	.	-	.	gene_id "cassette.395"; transcript_id "cassette.395"; gene_name "CUFF.1975"; flanks "169711970^,169713200-"; structure "0,1-2^"; splice_chain ",169712396-169712720^"; psi "0.092600";
chr12	juncbase	cassette	69229764	69233054	.	-	.	gene_id "cassette.396"; transcript_id "cassette.396"; gene_name "CUFF.1975"; flanks "69229764^,69233054-"; structure "0,1-2^"; splice_chain ",69230452-69230529^"; psi "0.695400";
chr6	juncbase	intron_retention	348841	350822	.	-	.	gene_id "intron_retention.530"; transcript_id "intron_retention.530"; gene_name "CUFF.1975"; flanks "348841-,350822^"; structure "0,1^2-"; splice_chain ",348841^350822-"; psi "0.832800";
chr19	juncbase	jcn_only_AA	17448473	17448817	.	-	.	gene_id "jcn_only_AA.448"; transcript_id "jcn_only_AA.448"; gene_name "CUFF.1975"; flanks "17448473^,17448817^"; structure "1-,2-"; splice_chain "17448683-,17448817-"; psi "0.778291";
chr19	juncbase	jcn_only_AA	17448473	17448708	.	-	.	gene_id "jcn_only_AA.449"; transcript_id "jcn_only_AA.449"; gene_name "CUFF.1975"; flanks "17448473^,17448708^"; structure "1-,2-"; splice_chain "17448683-,17448708-"; psi "0.455154";
chr8	juncbase	cassette	81083660	80965665	.	-	.	gene_id "cassette.397"; transcript_id "cassette.397"; gene_name "CUFF.1975"; flanks "81083660^,80965665-"; structure "0,1-2^"; splice_chain ",80976828-80976713^"; psi "0.960800";
chr17	juncbase	jcn_only_AD	56083871	56082402	.	-	.	gene_id "jcn_only_AD.566"; transcript_id "jcn_only_AD.566"; gene_name "CUFF.1975"; flanks "56083871-,56082402-"; structure "1^,2^"; splice_chain "56083871^,56082775^"; psi "0.490683";
chr2	juncbase	intron_retention	262631	260702	.	-	.	gene_id "intron_retention.531"; transcript_id "intron_retention.531"; gene_name "CUFF.1975"; flanks "262631-,260702^"; structure "0,1^2-"; splice_chain ",262631^260702-"; psi "0.790700";
chr2	juncbase	intron_retention	219222457	219222709	.	-	.	gene_id "intron_retention.532"; transcript_id "intron_retention.532"; gene_name "CUFF.1975"; flanks "219222457-,219222709^"; structure "0,1^2-"; splice_chain ",219222457^219222709-"; psi "0.578200";
chr4	juncbase	jcn_only_AA	99578691	99428879	.	-	.	gene_id "jcn_only_AA.450"; transcript_id "jcn_only_AA.450"; gene_name "CUFF.1975"; flanks "99578691^,99428879^"; structure "1-,2-"; splice_chain "99496056-,99428879-"; psi "0.798000";
chr9	juncbase	intron_retention	139744589	139744955	.	-	.	gene_id "intron_retention.533"; transcript_id "intron_retention.533"; gene_name "CUFF.1975"; flanks "139744589-,139744955^"; structure "0,1^2-"; splice_chain ",139744589^139744955-"; psi "0.542900";
chr1	juncbase	cassette	156446804	156438812	.	-	.	gene_id "cassette.398"; transcript_id "cassette.398"; gene_name "CUFF.1975"; flanks "156446804^,156438812-"; structure "0,1-2^"; splice_chain ",156445029-156444900^"; psi "0.523300";
chr17	juncbase	intron_retention	56082775	56082402	.	-	.	gene_id "intron_retention.534"; transcript_id "intron_retention.534"; gene_name "CUFF.1975"; flanks "56082775-,56082402^"; structure "0,1^2-"; splice_chain ",56082775^56082402-"; psi "0.684600";
chr7	juncbase	jcn_only_AD	157647567	157655237	.	-	.	gene_id "jcn_only_AD.567"; transcript_id "jcn_only_AD.567"; gene_name "CUFF.1975"; flanks "157647567-,157655237-"; structure "1^,2^"; splice_chain "157647567^,157650240^"; psi "0.837800";
chr6	juncbase	jcn_only_AD	112558117	112668494	.	-	.	gene_id "jcn_only_AD.568"; transcript_id "jcn_only_AD.568"; gene_name "CUFF.1975"; flanks "112558117-,112668494-"; structure "1^,2^"; splice_chain "112558117^,112664980^"; psi "0.670370";
chr15	juncbase	cassette	77578765	77544868	.	-	.	gene_id "cassette.399"; transcript_id "cassette.399"; gene_name "CUFF.1975"; flanks "77578765^,77544868-"; structure "0,1-2^"; splice_chain ",77577420-77577300^"; psi "0.987100";
chr6	juncbase	jcn_only_AA	124962673	124937642	.	-	.	gene_id "jcn_only_AA.451"; transcript_id "jcn_only_AA.451"; gene_name "CUFF.1975"; flanks "124962673^,124937642^"; structure "1-,2-"; splice_chain "124937644-,124937642-"; psi "0.142900";
chr11	juncbase	jcn_only_AA	119056661	119057325	.	-	.	gene_id "jcn_only_AA.452"; transcript_id "jcn_only_AA.452"; gene_name "CUFF.1975"; flanks "119056661^,119057325^"; structure "1-,2-"; splice_chain "119056801-,119057325-"; psi "0.040100";
chr14	juncbase	cassette	58979345	59014499	.	-	.	gene_id "cassette.400"; transcript_id "cassette.400"; gene_name "CUFF.1975"; flanks "58979345^,59014499-"; structure "0,1-2^"; splice_chain ",59006789-59006854^"; psi "0.199400";
chr11	juncbase	intron_retention	63999436	63999982	.	-	.	gene_id "intron_retention.535"; transcript_id "intron_retention.535"; gene_name "CUFF.1975"; flanks "63999436-,63999982^"; structure "0,1^2-"; splice_chain ",63999436^63999982-"; psi "0.748300";
chr17	juncbase	jcn_only_AD	80416384	80417868	.	-	.	gene_id "jcn_only_AD.569"; transcript_id "jcn_only_AD.569"; gene_name "CUFF.1975"; flanks "80416384-,80417868-"; structure "1^,2^"; splice_chain "80416384^,80416393^"; psi "0.268800";
chr17	juncbase	intron_retention	66508636	66511535	.	-	.	gene_id "intron_retention.536"; transcript_id "intron_retention.536"; gene_name "CUFF.1975"; flanks "66508636-,66511535^"; structure "0,1^2-"; splice_chain ",66508636^66511535-"; psi "0.743700";
chr10	juncbase	intron_retention	60047517	60048036	.	-	.	gene_id "intron_retention.537"; transcript_id "intron_retention.537"; gene_name "CUFF.1975"; flanks "60047517-,60048036^"; structure "0,1^2-"; splice_chain ",60047517^60048036-"; psi "0.939900";
chr15	juncbase	jcn_only_AA	75782549	75772255	.	-	.	gene_id "jcn_only_AA.453"; transcript_id "jcn_only_AA.453"; gene_name "CUFF.1975"; flanks "75782549^,75772255^"; structure "1-,2-"; splice_chain "75780118-,75772255-"; psi "0.395100";
chr7	juncbase	intron_retention	44247797	44248006	.	-	.	gene_id "intron_retention.538"; transcript_id "intron_retention.538"; gene_name "CUFF.1975"; flanks "44247797-,44248006^"; structure "0,1^2-"; splice_chain ",44247797^44248006-"; psi "0.615000";
chr5	juncbase	cassette	54456224	54459883	.	-	.	gene_id "cassette.401"; transcript_id "cassette.401"; gene_name "CUFF.1975"; flanks "54456224^,54459883-"; structure "0,1-2^"; splice_chain ",54456880-54457083^"; psi "0.594200";
chr1	juncbase	intron_retention	155181337	155181918	.	-	.	gene_id "intron_retention.539"; transcript_id "intron_retention.539"; gene_name "CUFF.1975"; flanks "155181337-,155181918^"; structure "0,1^2-"; splice_chain ",155181337^155181918-"; psi "0.640000";
chr3	juncbase	jcn_only_AD	125639748	125643809	.	-	.	gene_id "jcn_only_AD.570"; transcript_id "jcn_only_AD.570"; gene_name "CUFF.1975"; flanks "125639748-,125643809-"; structure "1^,2^"; splice_chain "125639748^,125642983^"; psi "0.135000";
chr17	juncbase	jcn_only_AA	79479258	79479141	.	-	.	gene_id "jcn_only_AA.454"; transcript_id "jcn_only_AA.454"; gene_name "CUFF.1975"; flanks "79479258^,79479141^"; structure "1-,2-"; splice_chain "79479168-,79479141-"; psi "0.044000";
chr10	juncbase	jcn_only_AA	73970490	73963282	.	-	.	gene_id "jcn_only_AA.455"; transcript_id "jcn_only_AA.455"; gene_name "CUFF.1975"; flanks "73970490^,73963282^"; structure "1-,2-"; splice_chain "73964263-,73963282-"; psi "0.850700";
chr7	juncbase	cassette	44250723	44251846	.	-	.	gene_id "cassette.402"; transcript_id "cassette.402"; gene_name "CUFF.1975"; flanks "44250723^,44251846-"; structure "0,1-2^"; splice_chain ",44251153-44251203^"; psi "0.907300";
chr3	juncbase	cassette	127294783	127294108	.	-	.	gene_id "cassette.403"; transcript_id "cassette.403"; gene_name "CUFF.1975"; flanks "127294783^,127294108-"; structure "0,1-2^"; splice_chain ",127294652-127294592^"; psi "0.453200";
chr3	juncbase	cassette	127294783	127294348	.	-	.	gene_id "cassette.404"; transcript_id "cassette.404"; gene_name "CUFF.1975"; flanks "127294783^,127294348-"; structure "0,1-2^"; splice_chain ",127294652-127294592^"; psi "0.453200";
chr15	juncbase	cassette	40509868	40545379	.	-	.	gene_id "cassette.405"; transcript_id "cassette.405"; gene_name "CUFF.1975"; flanks "40509868^,40545379-"; structure "0,1-2^"; splice_chain ",40532800-40532882^"; psi "0.782800";
chr15	juncbase	cassette	40531336	40545379	.	-	.	gene_id "cassette.406"; transcript_id "cassette.406"; gene_name "CUFF.1975"; flanks "40531336^,40545379-"; structure "0,1-2^"; splice_chain ",40532800-40532882^"; psi "0.782800";
chr5	juncbase	jcn_only_AA	127418427	127398192	.	-	.	gene_id "jcn_only_AA.456"; transcript_id "jcn_only_AA.456"; gene_name "CUFF.1975"; flanks "127418427^,127398192^"; structure "1-,2-"; splice_chain "127417886-,127398192-"; psi "0.197150";
chr5	juncbase	jcn_only_AA	127418427	127417883	.	-	.	gene_id "jcn_only_AA.457"; transcript_id "jcn_only_AA.457"; gene_name "CUFF.1975"; flanks "127418427^,127417883^"; structure "1-,2-"; splice_chain "127417886-,127417883-"; psi "0.165643";
chr11	juncbase	intron_retention	124757629	124757395	.	-	.	gene_id "intron_retention.540"; transcript_id "intron_retention.540"; gene_name "CUFF.1975"; flanks "124757629-,124757395^"; structure "0,1^2-"; splice_chain ",124757629^124757395-"; psi "0.129000";
chr17	juncbase	jcn_only_AD	80439087	80441592	.	-	.	gene_id "jcn_only_AD.571"; transcript_id "jcn_only_AD.571"; gene_name "CUFF.1975"; flanks "80439087-,80441592-"; structure "1^,2^"; splice_chain "80439087^,80441180^"; psi "0.488600";
chr14	juncbase	intron_retention	24563643	24563975	.	-	.	gene_id "intron_retention.541"; transcript_id "intron_retention.541"; gene_name "CUFF.1975"; flanks "24563643-,24563975^"; structure "0,1^2-"; splice_chain ",24563643^24563975-"; psi "0.112000";
chr2	juncbase	intron_retention	4007506	4007226	.	-	.	gene_id "intron_retention.542"; transcript_id "intron_retention.542"; gene_name "CUFF.1975"; flanks "4007506-,4007226^"; structure "0,1^2-"; splice_chain ",4007506^4007226-"; psi "0.871400";
chr11	juncbase	jcn_only_AA	36415561	36422547	.	-	.	gene_id "jcn_only_AA.458"; transcript_id "jcn_only_AA.458"; gene_name "CUFF.1975"; flanks "36415561^,36422547^"; structure "1-,2-"; splice_chain "36415946-,36422547-"; psi "0.681808";
chr11	juncbase	jcn_only_AA	36415561	36417664	.	-	.	gene_id "jcn_only_AA.459"; transcript_id "jcn_only_AA.459"; gene_name "CUFF.1975"; flanks "36415561^,36417664^"; structure "1-,2-"; splice_chain "36415946-,36417664-"; psi "0.183842";
chr16	juncbase	cassette	4466460	4462431	.	-	.	gene_id "cassette.407"; transcript_id "cassette.407"; gene_name "CUFF.1975"; flanks "4466460^,4462431-"; structure "0,1-2^"; splice_chain ",4463405-4463309^"; psi "0.927300";
chr12	juncbase	jcn_only_AD	72094658	72097757	.	-	.	gene_id "jcn_only_AD.572"; transcript_id "jcn_only_AD.572"; gene_name "CUFF.1975"; flanks "72094658-,72097757-"; structure "1^,2^"; splice_chain "72094658^,72094805^"; psi "0.287900";
chr4	juncbase	jcn_only_AD	20525800	20530572	.	-	.	gene_id "jcn_only_AD.573"; transcript_id "jcn_only_AD.573"; gene_name "CUFF.1975"; flanks "20525800-,20530572-"; structure "1^,2^"; splice_chain "20525800^,20526795^"; psi "0.333300";
chr19	juncbase	intron_retention	39924134	39924058	.	-	.	gene_id "intron_retention.543"; transcript_id "intron_retention.543"; gene_name "CUFF.1975"; flanks "39924134-,39924058^"; structure "0,1^2-"; splice_chain ",39924134^39924058-"; psi "0.708300";
chr12	juncbase	jcn_only_AA	57853984	57858456	.	-	.	gene_id "jcn_only_AA.460"; transcript_id "jcn_only_AA.460"; gene_name "CUFF.1975"; flanks "57853984^,57858456^"; structure "1-,2-"; splice_chain "57857448-,57858456-"; psi "0.802800";
chr1	juncbase	cassette	110214004	110217369	.	-	.	gene_id "cassette.408"; transcript_id "cassette.408"; gene_name "CUFF.1975"; flanks "110214004^,110217369-"; structure "0,1-2^"; splice_chain ",110214095-110214205^"; psi "0.979400";
chr15	juncbase	jcn_only_AD	45740999	45752644	.	-	.	gene_id "jcn_only_AD.574"; transcript_id "jcn_only_AD.574"; gene_name "CUFF.1975"; flanks "45740999-,45752644-"; structure "1^,2^"; splice_chain "45740999^,45751248^"; psi "0.610200";
chr8	juncbase	jcn_only_AA	144356972	144358173	.	-	.	gene_id "jcn_only_AA.461"; transcript_id "jcn_only_AA.461"; gene_name "CUFF.1975"; flanks "144356972^,144358173^"; structure "1-,2-"; splice_chain "144357148-,144358173-"; psi "0.371658";
chr8	juncbase	jcn_only_AA	144356972	144358067	.	-	.	gene_id "jcn_only_AA.462"; transcript_id "jcn_only_AA.462"; gene_name "CUFF.1975"; flanks "144356972^,144358067^"; structure "1-,2-"; splice_chain "144357148-,144358067-"; psi "0.867494";
chr8	juncbase	jcn_only_AA	144356972	144357365	.	-	.	gene_id "jcn_only_AA.463"; transcript_id "jcn_only_AA.463"; gene_name "CUFF.1975"; flanks "144356972^,144357365^"; structure "1-,2-"; splice_chain "144357148-,144357365-"; psi "0.716184";
chr5	juncbase	jcn_only_AA	140031391	140031673	.	-	.	gene_id "jcn_only_AA.464"; transcript_id "jcn_only_AA.464"; gene_name "CUFF.1975"; flanks "140031391^,140031673^"; structure "1-,2-"; splice_chain "140031652-,140031673-"; psi "0.979300";
chr13	juncbase	jcn_only_AA	78473994	78470693	.	-	.	gene_id "jcn_only_AA.465"; transcript_id "jcn_only_AA.465"; gene_name "CUFF.1975"; flanks "78473994^,78470693^"; structure "1-,2-"; splice_chain "78472469-,78470693-"; psi "0.472200";
chr19	juncbase	intron_retention	10213244	10207249	.	-	.	gene_id "intron_retention.544"; transcript_id "intron_retention.544"; gene_name "CUFF.1975"; flanks "10213244-,10207249^"; structure "0,1^2-"; splice_chain ",10213244^10207249-"; psi "0.261900";
chr22	juncbase	jcn_only_AD	19420130	19420788	.	-	.	gene_id "jcn_only_AD.575"; transcript_id "jcn_only_AD.575"; gene_name "CUFF.1975"; flanks "19420130-,19420788-"; structure "1^,2^"; splice_chain "19420130^,19420382^"; psi "0.885400";
chr8	juncbase	jcn_only_AD	106456609	106573591	.	-	.	gene_id "jcn_only_AD.576"; transcript_id "jcn_only_AD.576"; gene_name "CUFF.1975"; flanks "106456609-,106573591-"; structure "1^,2^"; splice_chain "106456609^,106541197^"; psi "0.974600";
chrX	juncbase	jcn_only_AD	148863690	148867419	.	-	.	gene_id "jcn_only_AD.577"; transcript_id "jcn_only_AD.577"; gene_name "CUFF.1975"; flanks "148863690-,148867419-"; structure "1^,2^"; splice_chain "148863690^,148864249^"; psi "0.094800";
chr7	juncbase	jcn_only_AD	134249521	134252910	.	-	.	gene_id "jcn_only_AD.578"; transcript_id "jcn_only_AD.578"; gene_name "CUFF.1975"; flanks "134249521-,134252910-"; structure "1^,2^"; splice_chain "134249521^,134250298^"; psi "0.184900";
chr7	juncbase	jcn_only_AA	73106976	73277203	.	-	.	gene_id "jcn_only_AA.466"; transcript_id "jcn_only_AA.466"; gene_name "CUFF.1975"; flanks "73106976^,73277203^"; structure "1-,2-"; splice_chain "73107659-,73277203-"; psi "0.001893";
chr7	juncbase	jcn_only_AA	73106976	73111935	.	-	.	gene_id "jcn_only_AA.467"; transcript_id "jcn_only_AA.467"; gene_name "CUFF.1975"; flanks "73106976^,73111935^"; structure "1-,2-"; splice_chain "73107659-,73111935-"; psi "0.208112";
chr10	juncbase	jcn_only_AD	80814353	80808689	.	-	.	gene_id "jcn_only_AD.579"; transcript_id "jcn_only_AD.579"; gene_name "CUFF.1975"; flanks "80814353-,80808689-"; structure "1^,2^"; splice_chain "80814353^,80810039^"; psi "0.008600";
chr16	juncbase	intron_retention	57521043	57513600	.	-	.	gene_id "intron_retention.545"; transcript_id "intron_retention.545"; gene_name "CUFF.1975"; flanks "57521043-,57513600^"; structure "0,1^2-"; splice_chain ",57521043^57513600-"; psi "0.719700";
chr7	juncbase	jcn_only_AD	73097713	73100966	.	-	.	gene_id "jcn_only_AD.580"; transcript_id "jcn_only_AD.580"; gene_name "CUFF.1975"; flanks "73097713-,73100966-"; structure "1^,2^"; splice_chain "73097713^,73098134^"; psi "0.023861";
chr15	juncbase	cassette	83698888	83687605	.	-	.	gene_id "cassette.409"; transcript_id "cassette.409"; gene_name "CUFF.1975"; flanks "83698888^,83687605-"; structure "0,1-2^"; splice_chain ",83689514-83689427^"; psi "0.426400";
chr17	juncbase	cassette	77005746	76993726	.	-	.	gene_id "cassette.410"; transcript_id "cassette.410"; gene_name "CUFF.1975"; flanks "77005746^,76993726-"; structure "0,1-2^"; splice_chain ",76994045-76993922^"; psi "0.963000";
chr10	juncbase	cassette	18240954	18250510	.	-	.	gene_id "cassette.411"; transcript_id "cassette.411"; gene_name "CUFF.1975"; flanks "18240954^,18250510-"; structure "0,1-2^"; splice_chain ",18242120-18242466^"; psi "0.285700";
chr18	juncbase	jcn_only_AA	67613970	67563281	.	-	.	gene_id "jcn_only_AA.468"; transcript_id "jcn_only_AA.468"; gene_name "CUFF.1975"; flanks "67613970^,67563281^"; structure "1-,2-"; splice_chain "67611804-,67563281-"; psi "0.753200";
chr17	juncbase	intron_retention	29684108	29684287	.	-	.	gene_id "intron_retention.546"; transcript_id "intron_retention.546"; gene_name "CUFF.1975"; flanks "29684108-,29684287^"; structure "0,1^2-"; splice_chain ",29684108^29684287-"; psi "0.010400";
chr11	juncbase	intron_retention	119291579	119291088	.	-	.	gene_id "intron_retention.547"; transcript_id "intron_retention.547"; gene_name "CUFF.1975"; flanks "119291579-,119291088^"; structure "0,1^2-"; splice_chain ",119291579^119291088-"; psi "0.898900";
chr5	juncbase	cassette	149786715	149785884	.	-	.	gene_id "cassette.412"; transcript_id "cassette.412"; gene_name "CUFF.1975"; flanks "149786715^,149785884-"; structure "0,1-2^"; splice_chain ",149786523-149786444^"; psi "0.842600";
chr17	juncbase	intron_retention	61907309	61907493	.	-	.	gene_id "intron_retention.548"; transcript_id "intron_retention.548"; gene_name "CUFF.1975"; flanks "61907309-,61907493^"; structure "0,1^2-"; splice_chain ",61907309^61907493-"; psi "0.062100";
chr15	juncbase	jcn_only_AA	45492925	45470504	.	-	.	gene_id "jcn_only_AA.469"; transcript_id "jcn_only_AA.469"; gene_name "CUFF.1975"; flanks "45492925^,45470504^"; structure "1-,2-"; splice_chain "45491318-,45470504-"; psi "0.920259";
chr15	juncbase	jcn_only_AA	45492925	45491298	.	-	.	gene_id "jcn_only_AA.470"; transcript_id "jcn_only_AA.470"; gene_name "CUFF.1975"; flanks "45492925^,45491298^"; structure "1-,2-"; splice_chain "45491318-,45491298-"; psi "0.266793";
chr19	juncbase	cassette	51485583	51483743	.	-	.	gene_id "cassette.413"; transcript_id "cassette.413"; gene_name "CUFF.1975"; flanks "51485583^,51483743-"; structure "0,1-2^"; splice_chain ",51485170-51485023^"; psi "0.471900";
chr6	juncbase	jcn_only_AA	161471011	161491640	.	-	.	gene_id "jcn_only_AA.471"; transcript_id "jcn_only_AA.471"; gene_name "CUFF.1975"; flanks "161471011^,161491640^"; structure "1-,2-"; splice_chain "161488231-,161491640-"; psi "0.898300";
chr6	juncbase	intron_retention	112382497	112385967	.	-	.	gene_id "intron_retention.549"; transcript_id "intron_retention.549"; gene_name "CUFF.1975"; flanks "112382497-,112385967^"; structure "0,1^2-"; splice_chain ",112382497^112385967-"; psi "0.026500";
chr7	juncbase	intron_retention	75045048	75045259	.	-	.	gene_id "intron_retention.550"; transcript_id "intron_retention.550"; gene_name "CUFF.1975"; flanks "75045048-,75045259^"; structure "0,1^2-"; splice_chain ",75045048^75045259-"; psi "0.797500";
chr19	juncbase	cassette	56312938	56307616	.	-	.	gene_id "cassette.414"; transcript_id "cassette.414"; gene_name "CUFF.1975"; flanks "56312938^,56307616-"; structure "0,1-2^"; splice_chain ",56309670-56309595^"; psi "0.161800";
chr14	juncbase	cassette	77934527	77935420	.	-	.	gene_id "cassette.415"; transcript_id "cassette.415"; gene_name "CUFF.1975"; flanks "77934527^,77935420-"; structure "0,1-2^"; splice_chain ",77934800-77934851^"; psi "0.885900";
chr19	juncbase	jcn_only_AD	11041000	11044037	.	-	.	gene_id "jcn_only_AD.581"; transcript_id "jcn_only_AD.581"; gene_name "CUFF.1975"; flanks "11041000-,11044037-"; structure "1^,2^"; splice_chain "11041000^,11042936^"; psi "0.490300";
chr5	juncbase	cassette	140028122	140031299	.	-	.	gene_id "cassette.416"; transcript_id "cassette.416"; gene_name "CUFF.1975"; flanks "140028122^,140031299-"; structure "0,1-2^"; splice_chain ",140028468-140028565^"; psi "0.477700";
chr14	juncbase	intron_retention	77934527	77935420	.	-	.	gene_id "intron_retention.551"; transcript_id "intron_retention.551"; gene_name "CUFF.1975"; flanks "77934527-,77935420^"; structure "0,1^2-"; splice_chain ",77934527^77935420-"; psi "0.681800";
chr18	juncbase	cassette	44497285	44444211	.	-	.	gene_id "cassette.417"; transcript_id "cassette.417"; gene_name "CUFF.1975"; flanks "44497285^,44444211-"; structure "0,1-2^"; splice_chain ",44471017-44470543^"; psi "0.986100";
chr19	juncbase	jcn_only_AD	44771114	44777052	.	-	.	gene_id "jcn_only_AD.582"; transcript_id "jcn_only_AD.582"; gene_name "CUFF.1975"; flanks "44771114-,44777052-"; structure "1^,2^"; splice_chain "44771114^,44771297^"; psi "0.870600";
chr14	juncbase	cassette	50247493	50249260	.	-	.	gene_id "cassette.418"; transcript_id "cassette.418"; gene_name "CUFF.1975"; flanks "50247493^,50249260-"; structure "0,1-2^"; splice_chain ",50249088-50249175^"; psi "0.969200";
chr16	juncbase	jcn_only_AD	105542	105794	.	-	.	gene_id "jcn_only_AD.583"; transcript_id "jcn_only_AD.583"; gene_name "CUFF.1975"; flanks "105542-,105794-"; structure "1^,2^"; splice_chain "105542^,105549^"; psi "0.781400";
chr11	juncbase	intron_retention	118402586	118402961	.	-	.	gene_id "intron_retention.552"; transcript_id "intron_retention.552"; gene_name "CUFF.1975"; flanks "118402586-,118402961^"; structure "0,1^2-"; splice_chain ",118402586^118402961-"; psi "0.864000";
chr19	juncbase	jcn_only_AA	17581516	17597372	.	-	.	gene_id "jcn_only_AA.472"; transcript_id "jcn_only_AA.472"; gene_name "CUFF.1975"; flanks "17581516^,17597372^"; structure "1-,2-"; splice_chain "17594691-,17597372-"; psi "0.829772";
chr19	juncbase	jcn_only_AA	17581516	17598269	.	-	.	gene_id "jcn_only_AA.473"; transcript_id "jcn_only_AA.473"; gene_name "CUFF.1975"; flanks "17581516^,17598269^"; structure "1-,2-"; splice_chain "17594691-,17598269-"; psi "0.817251";
chr6	juncbase	cassette	128324342	128320049	.	-	.	gene_id "cassette.419"; transcript_id "cassette.419"; gene_name "CUFF.1975"; flanks "128324342^,128320049-"; structure "0,1-2^"; splice_chain ",128322352-128322341^"; psi "0.909400";
chr7	juncbase	jcn_only_AD	38971878	38937729	.	-	.	gene_id "jcn_only_AD.584"; transcript_id "jcn_only_AD.584"; gene_name "CUFF.1975"; flanks "38971878-,38937729-"; structure "1^,2^"; splice_chain "38971878^,38948754^"; psi "0.193855";
chr7	juncbase	jcn_only_AD	38969072	38937729	.	-	.	gene_id "jcn_only_AD.585"; transcript_id "jcn_only_AD.585"; gene_name "CUFF.1975"; flanks "38969072-,38937729-"; structure "1^,2^"; splice_chain "38969072^,38948754^"; psi "0.127042";
chr14	juncbase	cassette	50069186	50080974	.	-	.	gene_id "cassette.420"; transcript_id "cassette.420"; gene_name "CUFF.1975"; flanks "50069186^,50080974-"; structure "0,1-2^"; splice_chain ",50074118-50074839^"; psi "0.908700";
chr3	juncbase	intron_retention	125802772	125787089	.	-	.	gene_id "intron_retention.553"; transcript_id "intron_retention.553"; gene_name "CUFF.1975"; flanks "125802772-,125787089^"; structure "0,1^2-"; splice_chain ",125802772^125787089-"; psi "0.837800";
chr18	juncbase	cassette	44500022	44483596	.	-	.	gene_id "cassette.421"; transcript_id "cassette.421"; gene_name "CUFF.1975"; flanks "44500022^,44483596-"; structure "0,1-2^"; splice_chain ",44486278-44486190^"; psi "0.195900";
chr2	juncbase	jcn_only_AD	68384393	68374699	.	-	.	gene_id "jcn_only_AD.586"; transcript_id "jcn_only_AD.586"; gene_name "CUFF.1975"; flanks "68384393-,68374699-"; structure "1^,2^"; splice_chain "68384393^,68384059^"; psi "0.875936";
chr2	juncbase	jcn_only_AD	68384506	68374699	.	-	.	gene_id "jcn_only_AD.587"; transcript_id "jcn_only_AD.587"; gene_name "CUFF.1975"; flanks "68384506-,68374699-"; structure "1^,2^"; splice_chain "68384506^,68384059^"; psi "0.901778";
chr17	juncbase	jcn_only_AA	80436794	80438958	.	-	.	gene_id "jcn_only_AA.474"; transcript_id "jcn_only_AA.474"; gene_name "CUFF.1975"; flanks "80436794^,80438958^"; structure "1-,2-"; splice_chain "80438283-,80438958-"; psi "0.985442";
chr11	juncbase	intron_retention	118402586	118402865	.	-	.	gene_id "intron_retention.554"; transcript_id "intron_retention.554"; gene_name "CUFF.1975"; flanks "118402586-,118402865^"; structure "0,1^2-"; splice_chain ",118402586^118402865-"; psi "0.022300";
chr5	juncbase	intron_retention	140039780	140040343	.	-	.	gene_id "intron_retention.555"; transcript_id "intron_retention.555"; gene_name "CUFF.1975"; flanks "140039780-,140040343^"; structure "0,1^2-"; splice_chain ",140039780^140040343-"; psi "0.013100";
chr19	juncbase	cassette	17445931	17448817	.	-	.	gene_id "cassette.422"; transcript_id "cassette.422"; gene_name "CUFF.1975"; flanks "17445931^,17448817-"; structure "0,1-2^"; splice_chain ",17447629-17447843^"; psi "0.952100";
chr17	juncbase	intron_retention	1940250	1943049	.	-	.	gene_id "intron_retention.556"; transcript_id "intron_retention.556"; gene_name "CUFF.1975"; flanks "1940250-,1943049^"; structure "0,1^2-"; splice_chain ",1940250^1943049-"; psi "0.251600";
chr17	juncbase	jcn_only_AD	6352727	6353348	.	-	.	gene_id "jcn_only_AD.588"; transcript_id "jcn_only_AD.588"; gene_name "CUFF.1975"; flanks "6352727-,6353348-"; structure "1^,2^"; splice_chain "6352727^,6353098^"; psi "0.935700";
chr2	juncbase	jcn_only_AA	25179912	25174423	.	-	.	gene_id "jcn_only_AA.475"; transcript_id "jcn_only_AA.475"; gene_name "CUFF.1975"; flanks "25179912^,25174423^"; structure "1-,2-"; splice_chain "25176504-,25174423-"; psi "0.616800";
chr2	juncbase	jcn_only_AD	69901155	69870406	.	-	.	gene_id "jcn_only_AD.589"; transcript_id "jcn_only_AD.589"; gene_name "CUFF.1975"; flanks "69901155-,69870406-"; structure "1^,2^"; splice_chain "69901155^,69870707^"; psi "0.122241";
chr2	juncbase	jcn_only_AD	69870924	69870406	.	-	.	gene_id "jcn_only_AD.590"; transcript_id "jcn_only_AD.590"; gene_name "CUFF.1975"; flanks "69870924-,69870406-"; structure "1^,2^"; splice_chain "69870924^,69870707^"; psi "0.112377";
chr2	juncbase	jcn_only_AD	69870875	69870406	.	-	.	gene_id "jcn_only_AD.591"; transcript_id "jcn_only_AD.591"; gene_name "CUFF.1975"; flanks "69870875-,69870406-"; structure "1^,2^"; splice_chain "69870875^,69870707^"; psi "0.316014";
chr16	juncbase	cassette	4526488	4556896	.	-	.	gene_id "cassette.423"; transcript_id "cassette.423"; gene_name "CUFF.1975"; flanks "4526488^,4556896-"; structure "0,1-2^"; splice_chain ",4555485-4555611^"; psi "0.930200";
chr16	juncbase	cassette	19659204	19663298	.	-	.	gene_id "cassette.424"; transcript_id "cassette.424"; gene_name "CUFF.1975"; flanks "19659204^,19663298-"; structure "0,1-2^"; splice_chain ",19661704-19661781^"; psi "0.690600";
chr1	juncbase	cassette	153924494	153921860	.	-	.	gene_id "cassette.425"; transcript_id "cassette.425"; gene_name "CUFF.1975"; flanks "153924494^,153921860-"; structure "0,1-2^"; splice_chain ",153924142-153923736^"; psi "0.826600";
chr7	juncbase	jcn_only_AD	73275596	73279323	.	-	.	gene_id "jcn_only_AD.592"; transcript_id "jcn_only_AD.592"; gene_name "CUFF.1975"; flanks "73275596-,73279323-"; structure "1^,2^"; splice_chain "73275596^,73275921^"; psi "0.384600";
chr19	juncbase	intron_retention	17597766	17597983	.	-	.	gene_id "intron_retention.557"; transcript_id "intron_retention.557"; gene_name "CUFF.1975"; flanks "17597766-,17597983^"; structure "0,1^2-"; splice_chain ",17597766^17597983-"; psi "0.527300";
chr2	juncbase	jcn_only_AA	33477911	33482435	.	-	.	gene_id "jcn_only_AA.476"; transcript_id "jcn_only_AA.476"; gene_name "CUFF.1975"; flanks "33477911^,33482435^"; structure "1-,2-"; splice_chain "33482351-,33482435-"; psi "0.520343";
chr2	juncbase	jcn_only_AA	33477911	33482510	.	-	.	gene_id "jcn_only_AA.477"; transcript_id "jcn_only_AA.477"; gene_name "CUFF.1975"; flanks "33477911^,33482510^"; structure "1-,2-"; splice_chain "33482351-,33482510-"; psi "0.334657";
chr2	juncbase	jcn_only_AD	61753556	61749818	.	-	.	gene_id "jcn_only_AD.593"; transcript_id "jcn_only_AD.593"; gene_name "CUFF.1975"; flanks "61753556-,61749818-"; structure "1^,2^"; splice_chain "61753556^,61753555^"; psi "0.000325";
chr2	juncbase	intron_retention	110882796	110881640	.	-	.	gene_id "intron_retention.558"; transcript_id "intron_retention.558"; gene_name "CUFF.1975"; flanks "110882796-,110881640^"; structure "0,1^2-"; splice_chain ",110882796^110881640-"; psi "0.619000";
chr5	juncbase	intron_retention	140706204	140707337	.	-	.	gene_id "intron_retention.559"; transcript_id "intron_retention.559"; gene_name "CUFF.1975"; flanks "140706204-,140707337^"; structure "0,1^2-"; splice_chain ",140706204^140707337-"; psi "0.102300";
chr2	juncbase	jcn_only_AA	27706156	27703993	.	-	.	gene_id "jcn_only_AA.478"; transcript_id "jcn_only_AA.478"; gene_name "CUFF.1975"; flanks "27706156^,27703993^"; structure "1-,2-"; splice_chain "27704127-,27703993-"; psi "0.155200";
chr8	juncbase	intron_retention	30651433	30648831	.	-	.	gene_id "intron_retention.560"; transcript_id "intron_retention.560"; gene_name "CUFF.1975"; flanks "30651433-,30648831^"; structure "0,1^2-"; splice_chain ",30651433^30648831-"; psi "0.601800";
chr14	juncbase	cassette	104212710	104208628	.	-	.	gene_id "cassette.426"; transcript_id "cassette.426"; gene_name "CUFF.1975"; flanks "104212710^,104208628-"; structure "0,1-2^"; splice_chain ",104209160-104208991^"; psi "0.919900";
chr17	juncbase	intron_retention	41739239	41738761	.	-	.	gene_id "intron_retention.561"; transcript_id "intron_retention.561"; gene_name "CUFF.1975"; flanks "41739239-,41738761^"; structure "0,1^2-"; splice_chain ",41739239^41738761-"; psi "0.403900";
chr9	juncbase	intron_retention	139794972	139802522	.	-	.	gene_id "intron_retention.562"; transcript_id "intron_retention.562"; gene_name "CUFF.1975"; flanks "139794972-,139802522^"; structure "0,1^2-"; splice_chain ",139794972^139802522-"; psi "0.012500";
chr17	juncbase	jcn_only_AA	79225293	79220858	.	-	.	gene_id "jcn_only_AA.479"; transcript_id "jcn_only_AA.479"; gene_name "CUFF.1975"; flanks "79225293^,79220858^"; structure "1-,2-"; splice_chain "79223893-,79220858-"; psi "0.716681";
chr17	juncbase	jcn_only_AA	79225293	79220861	.	-	.	gene_id "jcn_only_AA.480"; transcript_id "jcn_only_AA.480"; gene_name "CUFF.1975"; flanks "79225293^,79220861^"; structure "1-,2-"; splice_chain "79223893-,79220861-"; psi "0.720641";
chr7	juncbase	jcn_only_AD	129019590	129028897	.	-	.	gene_id "jcn_only_AD.594"; transcript_id "jcn_only_AD.594"; gene_name "CUFF.1975"; flanks "129019590-,129028897-"; structure "1^,2^"; splice_chain "129019590^,129028781^"; psi "0.953300";
chr17	juncbase	intron_retention	61908295	61908396	.	-	.	gene_id "intron_retention.563"; transcript_id "intron_retention.563"; gene_name "CUFF.1975"; flanks "61908295-,61908396^"; structure "0,1^2-"; splice_chain ",61908295^61908396-"; psi "0.029700";
chr2	juncbase	cassette	73215387	73188377	.	-	.	gene_id "cassette.427"; transcript_id "cassette.427"; gene_name "CUFF.1975"; flanks "73215387^,73188377-"; structure "0,1-2^"; splice_chain ",73195662-73195577^"; psi "0.714300";
chr7	juncbase	intron_retention	107220746	107221204	.	-	.	gene_id "intron_retention.564"; transcript_id "intron_retention.564"; gene_name "CUFF.1975"; flanks "107220746-,107221204^"; structure "0,1^2-"; splice_chain ",107220746^107221204-"; psi "0.063000";
chr15	juncbase	intron_retention	40568306	40569317	.	-	.	gene_id "intron_retention.565"; transcript_id "intron_retention.565"; gene_name "CUFF.1975"; flanks "40568306-,40569317^"; structure "0,1^2-"; splice_chain ",40568306^40569317-"; psi "0.770900";
chr15	juncbase	cassette	41120585	41108451	.	-	.	gene_id "cassette.428"; transcript_id "cassette.428"; gene_name "CUFF.1975"; flanks "41120585^,41108451-"; structure "0,1-2^"; splice_chain ",41109545-41109430^"; psi "0.296700";
chr2	juncbase	cassette	231927035	231931620	.	-	.	gene_id "cassette.429"; transcript_id "cassette.429"; gene_name "CUFF.1975"; flanks "231927035^,231931620-"; structure "0,1-2^"; splice_chain ",231927220-231927389^"; psi "0.955700";
chr14	juncbase	jcn_only_AA	104213270	104212890	.	-	.	gene_id "jcn_only_AA.481"; transcript_id "jcn_only_AA.481"; gene_name "CUFF.1975"; flanks "104213270^,104212890^"; structure "1-,2-"; splice_chain "104213109-,104212890-"; psi "0.433512";
chr17	juncbase	intron_retention	66509119	66511128	.	-	.	gene_id "intron_retention.566"; transcript_id "intron_retention.566"; gene_name "CUFF.1975"; flanks "66509119-,66511128^"; structure "0,1^2-"; splice_chain ",66509119^66511128-"; psi "0.630400";
chr2	juncbase	intron_retention	110886763	110883258	.	-	.	gene_id "intron_retention.567"; transcript_id "intron_retention.567"; gene_name "CUFF.1975"; flanks "110886763-,110883258^"; structure "0,1^2-"; splice_chain ",110886763^110883258-"; psi "0.034600";
chr9	juncbase	intron_retention	130941523	130941183	.	-	.	gene_id "intron_retention.568"; transcript_id "intron_retention.568"; gene_name "CUFF.1975"; flanks "130941523-,130941183^"; structure "0,1^2-"; splice_chain ",130941523^130941183-"; psi "0.970700";
chr15	juncbase	jcn_only_AD	24819891	24820054	.	-	.	gene_id "jcn_only_AD.595"; transcript_id "jcn_only_AD.595"; gene_name "CUFF.1975"; flanks "24819891-,24820054-"; structure "1^,2^"; splice_chain "24819891^,24819960^"; psi "0.712100";
chr16	juncbase	jcn_only_AD	3115495	3115785	.	-	.	gene_id "jcn_only_AD.596"; transcript_id "jcn_only_AD.596"; gene_name "CUFF.1975"; flanks "3115495-,3115785-"; structure "1^,2^"; splice_chain "3115495^,3115656^"; psi "0.569944";
chr17	juncbase	cassette	25958330	25967598	.	-	.	gene_id "cassette.430"; transcript_id "cassette.430"; gene_name "CUFF.1975"; flanks "25958330^,25967598-"; structure "0,1-2^"; splice_chain ",25965289-25965380^"; psi "0.948400";
chr22	juncbase	jcn_only_AA	47188473	47189398	.	-	.	gene_id "jcn_only_AA.482"; transcript_id "jcn_only_AA.482"; gene_name "CUFF.1975"; flanks "47188473^,47189398^"; structure "1-,2-"; splice_chain "47188565-,47189398-"; psi "0.795734";
chr22	juncbase	jcn_only_AA	47188473	47189399	.	-	.	gene_id "jcn_only_AA.483"; transcript_id "jcn_only_AA.483"; gene_name "CUFF.1975"; flanks "47188473^,47189399^"; structure "1-,2-"; splice_chain "47188565-,47189399-"; psi "0.006332";
chr3	juncbase	intron_retention	125725560	125725471	.	-	.	gene_id "intron_retention.569"; transcript_id "intron_retention.569"; gene_name "CUFF.1975"; flanks "125725560-,125725471^"; structure "0,1^2-"; splice_chain ",125725560^125725471-"; psi "0.915500";
chr2	juncbase	intron_retention	88928250	88930918	.	-	.	gene_id "intron_retention.570"; transcript_id "intron_retention.570"; gene_name "CUFF.1975"; flanks "88928250-,88930918^"; structure "0,1^2-"; splice_chain ",88928250^88930918-"; psi "0.591500";
chr19	juncbase	jcn_only_AD	17581516	17597372	.	-	.	gene_id "jcn_only_AD.597"; transcript_id "jcn_only_AD.597"; gene_name "CUFF.1975"; flanks "17581516-,17597372-"; structure "1^,2^"; splice_chain "17581516^,17594930^"; psi "0.787900";
chr7	juncbase	jcn_only_AD	150784159	150813880	.	-	.	gene_id "jcn_only_AD.598"; transcript_id "jcn_only_AD.598"; gene_name "CUFF.1975"; flanks "150784159-,150813880-"; structure "1^,2^"; splice_chain "150784159^,150813737^"; psi "0.608641";
chr7	juncbase	jcn_only_AD	150784291	150813880	.	-	.	gene_id "jcn_only_AD.599"; transcript_id "jcn_only_AD.599"; gene_name "CUFF.1975"; flanks "150784291-,150813880-"; structure "1^,2^"; splice_chain "150784291^,150813737^"; psi "0.275782";
chr7	juncbase	jcn_only_AD	150783147	150813880	.	-	.	gene_id "jcn_only_AD.600"; transcript_id "jcn_only_AD.600"; gene_name "CUFF.1975"; flanks "150783147-,150813880-"; structure "1^,2^"; splice_chain "150783147^,150813737^"; psi "0.307095";
chr7	juncbase	jcn_only_AD	150787634	150813880	.	-	.	gene_id "jcn_only_AD.601"; transcript_id "jcn_only_AD.601"; gene_name "CUFF.1975"; flanks "150787634-,150813880-"; structure "1^,2^"; splice_chain "150787634^,150813737^"; psi "0.159946";
chr7	juncbase	jcn_only_AD	150809331	150813880	.	-	.	gene_id "jcn_only_AD.602"; transcript_id "jcn_only_AD.602"; gene_name "CUFF.1975"; flanks "150809331-,150813880-"; structure "1^,2^"; splice_chain "150809331^,150813737^"; psi "0.675240";
chr7	juncbase	jcn_only_AD	150783096	150813880	.	-	.	gene_id "jcn_only_AD.603"; transcript_id "jcn_only_AD.603"; gene_name "CUFF.1975"; flanks "150783096-,150813880-"; structure "1^,2^"; splice_chain "150783096^,150813737^"; psi "0.202297";
chr7	juncbase	jcn_only_AD	150812728	150813880	.	-	.	gene_id "jcn_only_AD.604"; transcript_id "jcn_only_AD.604"; gene_name "CUFF.1975"; flanks "150812728-,150813880-"; structure "1^,2^"; splice_chain "150812728^,150813737^"; psi "0.674818";
chr19	juncbase	jcn_only_AD	4323143	4323345	.	-	.	gene_id "jcn_only_AD.605"; transcript_id "jcn_only_AD.605"; gene_name "CUFF.1975"; flanks "4323143-,4323345-"; structure "1^,2^"; splice_chain "4323143^,4323234^"; psi "0.251883";
chr19	juncbase	jcn_only_AD	4323210	4323345	.	-	.	gene_id "jcn_only_AD.606"; transcript_id "jcn_only_AD.606"; gene_name "CUFF.1975"; flanks "4323210-,4323345-"; structure "1^,2^"; splice_chain "4323210^,4323234^"; psi "0.158320";
chr7	juncbase	jcn_only_AD	36934614	36901341	.	-	.	gene_id "jcn_only_AD.607"; transcript_id "jcn_only_AD.607"; gene_name "CUFF.1975"; flanks "36934614-,36901341-"; structure "1^,2^"; splice_chain "36934614^,36909998^"; psi "0.147300";
chr16	juncbase	intron_retention	3115688	3115785	.	-	.	gene_id "intron_retention.571"; transcript_id "intron_retention.571"; gene_name "CUFF.1975"; flanks "3115688-,3115785^"; structure "0,1^2-"; splice_chain ",3115688^3115785-"; psi "0.486100";
chr14	juncbase	jcn_only_AA	76368567	76420767	.	-	.	gene_id "jcn_only_AA.484"; transcript_id "jcn_only_AA.484"; gene_name "CUFF.1975"; flanks "76368567^,76420767^"; structure "1-,2-"; splice_chain "76407767-,76420767-"; psi "0.154625";
chr11	juncbase	jcn_only_AA	63669802	63670076	.	-	.	gene_id "jcn_only_AA.485"; transcript_id "jcn_only_AA.485"; gene_name "CUFF.1975"; flanks "63669802^,63670076^"; structure "1-,2-"; splice_chain "63670073-,63670076-"; psi "0.713500";
chr22	juncbase	intron_retention	20753980	20754922	.	-	.	gene_id "intron_retention.572"; transcript_id "intron_retention.572"; gene_name "CUFF.1975"; flanks "20753980-,20754922^"; structure "0,1^2-"; splice_chain ",20753980^20754922-"; psi "0.653800";
chr2	juncbase	intron_retention	220095127	220096982	.	-	.	gene_id "intron_retention.573"; transcript_id "intron_retention.573"; gene_name "CUFF.1975"; flanks "220095127-,220096982^"; structure "0,1^2-"; splice_chain ",220095127^220096982-"; psi "0.308900";
chr8	juncbase	jcn_only_AA	99057575	99055003	.	-	.	gene_id "jcn_only_AA.486"; transcript_id "jcn_only_AA.486"; gene_name "CUFF.1975"; flanks "99057575^,99055003^"; structure "1-,2-"; splice_chain "99057316-,99055003-"; psi "0.058000";
chrX	juncbase	jcn_only_AD	13834963	13825888	.	-	.	gene_id "jcn_only_AD.608"; transcript_id "jcn_only_AD.608"; gene_name "CUFF.1975"; flanks "13834963-,13825888-"; structure "1^,2^"; splice_chain "13834963^,13830990^"; psi "0.296300";
chr21	juncbase	intron_retention	15985197	15984966	.	-	.	gene_id "intron_retention.574"; transcript_id "intron_retention.574"; gene_name "CUFF.1975"; flanks "15985197-,15984966^"; structure "0,1^2-"; splice_chain ",15985197^15984966-"; psi "0.793100";
chr22	juncbase	intron_retention	21830281	21829589	.	-	.	gene_id "intron_retention.575"; transcript_id "intron_retention.575"; gene_name "CUFF.1975"; flanks "21830281-,21829589^"; structure "0,1^2-"; splice_chain ",21830281^21829589-"; psi "0.140900";
chr19	juncbase	jcn_only_AD	16186982	16192723	.	-	.	gene_id "jcn_only_AD.609"; transcript_id "jcn_only_AD.609"; gene_name "CUFF.1975"; flanks "16186982-,16192723-"; structure "1^,2^"; splice_chain "16186982^,16187507^"; psi "0.771690";
chr15	juncbase	jcn_only_AD	67713673	67700813	.	-	.	gene_id "jcn_only_AD.610"; transcript_id "jcn_only_AD.610"; gene_name "CUFF.1975"; flanks "67713673-,67700813-"; structure "1^,2^"; splice_chain "67713673^,67705841^"; psi "0.060600";
chr15	juncbase	jcn_only_AD	44898223	44892830	.	-	.	gene_id "jcn_only_AD.611"; transcript_id "jcn_only_AD.611"; gene_name "CUFF.1975"; flanks "44898223-,44892830-"; structure "1^,2^"; splice_chain "44898223^,44896303^"; psi "0.939800";
chr11	juncbase	intron_retention	67788995	67795519	.	-	.	gene_id "intron_retention.576"; transcript_id "intron_retention.576"; gene_name "CUFF.1975"; flanks "67788995-,67795519^"; structure "0,1^2-"; splice_chain ",67788995^67795519-"; psi "0.393900";
chr9	juncbase	jcn_only_AD	130986668	130996300	.	-	.	gene_id "jcn_only_AD.612"; transcript_id "jcn_only_AD.612"; gene_name "CUFF.1975"; flanks "130986668-,130996300-"; structure "1^,2^"; splice_chain "130986668^,130988452^"; psi "0.629952";
chr11	juncbase	jcn_only_AD	119056219	119056558	.	-	.	gene_id "jcn_only_AD.613"; transcript_id "jcn_only_AD.613"; gene_name "CUFF.1975"; flanks "119056219-,119056558-"; structure "1^,2^"; splice_chain "119056219^,119056337^"; psi "0.857100";
chr9	juncbase	intron_retention	35079438	35079238	.	-	.	gene_id "intron_retention.577"; transcript_id "intron_retention.577"; gene_name "CUFF.1975"; flanks "35079438-,35079238^"; structure "0,1^2-"; splice_chain ",35079438^35079238-"; psi "0.818800";
chr17	juncbase	intron_retention	66526142	66526418	.	-	.	gene_id "intron_retention.578"; transcript_id "intron_retention.578"; gene_name "CUFF.1975"; flanks "66526142-,66526418^"; structure "0,1^2-"; splice_chain ",66526142^66526418-"; psi "0.114500";
chr9	juncbase	intron_retention	125627903	125627820	.	-	.	gene_id "intron_retention.579"; transcript_id "intron_retention.579"; gene_name "CUFF.1975"; flanks "125627903-,125627820^"; structure "0,1^2-"; splice_chain ",125627903^125627820-"; psi "0.372400";
chr19	juncbase	cassette	8145887	8140074	.	-	.	gene_id "cassette.431"; transcript_id "cassette.431"; gene_name "CUFF.1975"; flanks "8145887^,8140074-"; structure "0,1-2^"; splice_chain ",8140295-8140167^"; psi "0.927600";
chr12	juncbase	jcn_only_AA	53853187	53854115	.	-	.	gene_id "jcn_only_AA.487"; transcript_id "jcn_only_AA.487"; gene_name "CUFF.1975"; flanks "53853187^,53854115^"; structure "1-,2-"; splice_chain "53853584-,53854115-"; psi "0.674341";
chr12	juncbase	jcn_only_AA	53853187	53854799	.	-	.	gene_id "jcn_only_AA.488"; transcript_id "jcn_only_AA.488"; gene_name "CUFF.1975"; flanks "53853187^,53854799^"; structure "1-,2-"; splice_chain "53853584-,53854799-"; psi "0.877863";
chr19	juncbase	intron_retention	18120848	18121005	.	-	.	gene_id "intron_retention.580"; transcript_id "intron_retention.580"; gene_name "CUFF.1975"; flanks "18120848-,18121005^"; structure "0,1^2-"; splice_chain ",18120848^18121005-"; psi "0.300400";
chr1	juncbase	jcn_only_AD	106146785	106132407	.	-	.	gene_id "jcn_only_AD.614"; transcript_id "jcn_only_AD.614"; gene_name "CUFF.1975"; flanks "106146785-,106132407-"; structure "1^,2^"; splice_chain "106146785^,106143892^"; psi "0.686994";
chr1	juncbase	jcn_only_AD	106145899	106132407	.	-	.	gene_id "jcn_only_AD.615"; transcript_id "jcn_only_AD.615"; gene_name "CUFF.1975"; flanks "106145899-,106132407-"; structure "1^,2^"; splice_chain "106145899^,106143892^"; psi "0.672739";
chr12	juncbase	jcn_only_AA	352845	351920	.	-	.	gene_id "jcn_only_AA.489"; transcript_id "jcn_only_AA.489"; gene_name "CUFF.1975"; flanks "352845^,351920^"; structure "1-,2-"; splice_chain "351931-,351920-"; psi "0.626900";
chr2	juncbase	intron_retention	46843726	46842324	.	-	.	gene_id "intron_retention.581"; transcript_id "intron_retention.581"; gene_name "CUFF.1975"; flanks "46843726-,46842324^"; structure "0,1^2-"; splice_chain ",46843726^46842324-"; psi "0.142900";
chr1	juncbase	cassette	28559432	28555534	.	-	.	gene_id "cassette.432"; transcript_id "cassette.432"; gene_name "CUFF.1975"; flanks "28559432^,28555534-"; structure "0,1-2^"; splice_chain ",28556763-28556642^"; psi "0.584400";
chr1	juncbase	intron_retention	245246990	245250062	.	-	.	gene_id "intron_retention.582"; transcript_id "intron_retention.582"; gene_name "CUFF.1975"; flanks "245246990-,245250062^"; structure "0,1^2-"; splice_chain ",245246990^245250062-"; psi "0.311800";
chr17	juncbase	intron_retention	15586175	15584267	.	-	.	gene_id "intron_retention.583"; transcript_id "intron_retention.583"; gene_name "CUFF.1975"; flanks "15586175-,15584267^"; structure "0,1^2-"; splice_chain ",15586175^15584267-"; psi "0.177400";
chr16	juncbase	intron_retention	3115688	3115782	.	-	.	gene_id "intron_retention.584"; transcript_id "intron_retention.584"; gene_name "CUFF.1975"; flanks "3115688-,3115782^"; structure "0,1^2-"; splice_chain ",3115688^3115782-"; psi "0.984800";
chr2	juncbase	cassette	153497428	153504310	.	-	.	gene_id "cassette.433"; transcript_id "cassette.433"; gene_name "CUFF.1975"; flanks "153497428^,153504310-"; structure "0,1-2^"; splice_chain ",153499933-153500058^"; psi "0.471200";
chr18	juncbase	jcn_only_AD	55713250	55833020	.	-	.	gene_id "jcn_only_AD.616"; transcript_id "jcn_only_AD.616"; gene_name "CUFF.1975"; flanks "55713250-,55833020-"; structure "1^,2^"; splice_chain "55713250^,55816801^"; psi "0.660699";
chr18	juncbase	jcn_only_AD	55711940	55833020	.	-	.	gene_id "jcn_only_AD.617"; transcript_id "jcn_only_AD.617"; gene_name "CUFF.1975"; flanks "55711940-,55833020-"; structure "1^,2^"; splice_chain "55711940^,55816801^"; psi "0.500000";
chr18	juncbase	jcn_only_AD	55758859	55833020	.	-	.	gene_id "jcn_only_AD.618"; transcript_id "jcn_only_AD.618"; gene_name "CUFF.1975"; flanks "55758859-,55833020-"; structure "1^,2^"; splice_chain "55758859^,55816801^"; psi "0.296196";
chr18	juncbase	jcn_only_AD	55713020	55833020	.	-	.	gene_id "jcn_only_AD.619"; transcript_id "jcn_only_AD.619"; gene_name "CUFF.1975"; flanks "55713020-,55833020-"; structure "1^,2^"; splice_chain "55713020^,55816801^"; psi "0.688077";
chr18	juncbase	jcn_only_AD	55712847	55833020	.	-	.	gene_id "jcn_only_AD.620"; transcript_id "jcn_only_AD.620"; gene_name "CUFF.1975"; flanks "55712847-,55833020-"; structure "1^,2^"; splice_chain "55712847^,55816801^"; psi "0.654513";
chr18	juncbase	jcn_only_AD	55714742	55833020	.	-	.	gene_id "jcn_only_AD.621"; transcript_id "jcn_only_AD.621"; gene_name "CUFF.1975"; flanks "55714742-,55833020-"; structure "1^,2^"; splice_chain "55714742^,55816801^"; psi "0.669080";
chr18	juncbase	jcn_only_AD	55816791	55833020	.	-	.	gene_id "jcn_only_AD.622"; transcript_id "jcn_only_AD.622"; gene_name "CUFF.1975"; flanks "55816791-,55833020-"; structure "1^,2^"; splice_chain "55816791^,55816801^"; psi "0.626980";
chr18	juncbase	jcn_only_AD	55722108	55833020	.	-	.	gene_id "jcn_only_AD.623"; transcript_id "jcn_only_AD.623"; gene_name "CUFF.1975"; flanks "55722108-,55833020-"; structure "1^,2^"; splice_chain "55722108^,55816801^"; psi "0.405963";
chr22	juncbase	intron_retention	51020458	51020291	.	-	.	gene_id "intron_retention.585"; transcript_id "intron_retention.585"; gene_name "CUFF.1975"; flanks "51020458-,51020291^"; structure "0,1^2-"; splice_chain ",51020458^51020291-"; psi "0.682800";
chr11	juncbase	jcn_only_AA	827459	828260	.	-	.	gene_id "jcn_only_AA.490"; transcript_id "jcn_only_AA.490"; gene_name "CUFF.1975"; flanks "827459^,828260^"; structure "1-,2-"; splice_chain "828230-,828260-"; psi "0.710800";
chr10	juncbase	cassette	35302627	35299370	.	-	.	gene_id "cassette.434"; transcript_id "cassette.434"; gene_name "CUFF.1975"; flanks "35302627^,35299370-"; structure "0,1-2^"; splice_chain ",35300892-35300776^"; psi "0.752400";
chr16	juncbase	intron_retention	4466786	4463405	.	-	.	gene_id "intron_retention.586"; transcript_id "intron_retention.586"; gene_name "CUFF.1975"; flanks "4466786-,4463405^"; structure "0,1^2-"; splice_chain ",4466786^4463405-"; psi "0.853300";
chr18	juncbase	jcn_only_AA	55711940	56057878	.	-	.	gene_id "jcn_only_AA.491"; transcript_id "jcn_only_AA.491"; gene_name "CUFF.1975"; flanks "55711940^,56057878^"; structure "1-,2-"; splice_chain "55833020-,56057878-"; psi "0.839700";
chr3	juncbase	jcn_only_AA	119530573	119531644	.	-	.	gene_id "jcn_only_AA.492"; transcript_id "jcn_only_AA.492"; gene_name "CUFF.1975"; flanks "119530573^,119531644^"; structure "1-,2-"; splice_chain "119531533-,119531644-"; psi "0.189500";
chr7	juncbase	intron_retention	156474523	156473268	.	-	.	gene_id "intron_retention.587"; transcript_id "intron_retention.587"; gene_name "CUFF.1975"; flanks "156474523-,156473268^"; structure "0,1^2-"; splice_chain ",156474523^156473268-"; psi "0.639300";
chr15	juncbase	jcn_only_AD	77713079	77750746	.	-	.	gene_id "jcn_only_AD.624"; transcript_id "jcn_only_AD.624"; gene_name "CUFF.1975"; flanks "77713079-,77750746-"; structure "1^,2^"; splice_chain "77713079^,77713436^"; psi "0.296912";
chr15	juncbase	jcn_only_AD	77713346	77750746	.	-	.	gene_id "jcn_only_AD.625"; transcript_id "jcn_only_AD.625"; gene_name "CUFF.1975"; flanks "77713346-,77750746-"; structure "1^,2^"; splice_chain "77713346^,77713436^"; psi "0.936691";
chr5	juncbase	intron_retention	141052968	141052700	.	-	.	gene_id "intron_retention.588"; transcript_id "intron_retention.588"; gene_name "CUFF.1975"; flanks "141052968-,141052700^"; structure "0,1^2-"; splice_chain ",141052968^141052700-"; psi "0.600000";
chr4	juncbase	cassette	162508607	162463845	.	-	.	gene_id "cassette.435"; transcript_id "cassette.435"; gene_name "CUFF.1975"; flanks "162508607^,162463845-"; structure "0,1-2^"; splice_chain ",162473729-162473640^"; psi "0.434800";
chr7	juncbase	intron_retention	156473137	156472000	.	-	.	gene_id "intron_retention.589"; transcript_id "intron_retention.589"; gene_name "CUFF.1975"; flanks "156473137-,156472000^"; structure "0,1^2-"; splice_chain ",156473137^156472000-"; psi "0.730800";
chr19	juncbase	cassette	17449550	17449932	.	-	.	gene_id "cassette.436"; transcript_id "cassette.436"; gene_name "CUFF.1975"; flanks "17449550^,17449932-"; structure "0,1-2^"; splice_chain ",17449763-17449835^"; psi "0.961500";
chr2	juncbase	intron_retention	207653627	207655296	.	-	.	gene_id "intron_retention.590"; transcript_id "intron_retention.590"; gene_name "CUFF.1975"; flanks "207653627-,207655296^"; structure "0,1^2-"; splice_chain ",207653627^207655296-"; psi "0.049300";
chr17	juncbase	cassette	40762555	40744180	.	-	.	gene_id "cassette.437"; transcript_id "cassette.437"; gene_name "CUFF.1975"; flanks "40762555^,40744180-"; structure "0,1-2^"; splice_chain ",40748645-40748551^"; psi "0.493500";
chr5	juncbase	jcn_only_AD	177636433	177637133	.	-	.	gene_id "jcn_only_AD.626"; transcript_id "jcn_only_AD.626"; gene_name "CUFF.1975"; flanks "177636433-,177637133-"; structure "1^,2^"; splice_chain "177636433^,177636448^"; psi "0.011000";
chr18	juncbase	jcn_only_AD	55711940	55833020	.	-	.	gene_id "jcn_only_AD.627"; transcript_id "jcn_only_AD.627"; gene_name "CUFF.1975"; flanks "55711940-,55833020-"; structure "1^,2^"; splice_chain "55711940^,55712847^"; psi "0.345487";
chr4	juncbase	cassette	649795	650663	.	-	.	gene_id "cassette.438"; transcript_id "cassette.438"; gene_name "CUFF.1975"; flanks "649795^,650663-"; structure "0,1-2^"; splice_chain ",650034-650081^"; psi "0.579700";
chr2	juncbase	cassette	169668162	169684668	.	-	.	gene_id "cassette.439"; transcript_id "cassette.439"; gene_name "CUFF.1975"; flanks "169668162^,169684668-"; structure "0,1-2^"; splice_chain ",169681144-169681227^"; psi "0.595900";
chr10	juncbase	cassette	27047991	27040712	.	-	.	gene_id "cassette.440"; transcript_id "cassette.440"; gene_name "CUFF.1975"; flanks "27047991^,27040712-"; structure "0,1-2^"; splice_chain ",27044670-27044584^"; psi "0.654400";
chr10	juncbase	cassette	27054147	27040712	.	-	.	gene_id "cassette.441"; transcript_id "cassette.441"; gene_name "CUFF.1975"; flanks "27054147^,27040712-"; structure "0,1-2^"; splice_chain ",27044670-27044584^"; psi "0.654400";
chr20	juncbase	jcn_only_AA	30135409	30136480	.	-	.	gene_id "jcn_only_AA.493"; transcript_id "jcn_only_AA.493"; gene_name "CUFF.1975"; flanks "30135409^,30136480^"; structure "1-,2-"; splice_chain "30136183-,30136480-"; psi "0.291700";
chr7	juncbase	intron_retention	75045056	75045259	.	-	.	gene_id "intron_retention.591"; transcript_id "intron_retention.591"; gene_name "CUFF.1975"; flanks "75045056-,75045259^"; structure "0,1^2-"; splice_chain ",75045056^75045259-"; psi "0.500000";
chr14	juncbase	jcn_only_AA	75137465	75136829	.	-	.	gene_id "jcn_only_AA.494"; transcript_id "jcn_only_AA.494"; gene_name "CUFF.1975"; flanks "75137465^,75136829^"; structure "1-,2-"; splice_chain "75136845-,75136829-"; psi "0.387100";
chr4	juncbase	jcn_only_AA	83542365	83536172	.	-	.	gene_id "jcn_only_AA.495"; transcript_id "jcn_only_AA.495"; gene_name "CUFF.1975"; flanks "83542365^,83536172^"; structure "1-,2-"; splice_chain "83536234-,83536172-"; psi "0.381000";
chr3	juncbase	jcn_only_AA	107596160	107586272	.	-	.	gene_id "jcn_only_AA.496"; transcript_id "jcn_only_AA.496"; gene_name "CUFF.1975"; flanks "107596160^,107586272^"; structure "1-,2-"; splice_chain "107595378-,107586272-"; psi "0.709677";
chr3	juncbase	jcn_only_AA	107596160	107595033	.	-	.	gene_id "jcn_only_AA.497"; transcript_id "jcn_only_AA.497"; gene_name "CUFF.1975"; flanks "107596160^,107595033^"; structure "1-,2-"; splice_chain "107595378-,107595033-"; psi "0.500000";
chr19	juncbase	intron_retention	50308833	50308918	.	-	.	gene_id "intron_retention.592"; transcript_id "intron_retention.592"; gene_name "CUFF.1975"; flanks "50308833-,50308918^"; structure "0,1^2-"; splice_chain ",50308833^50308918-"; psi "0.178200";
chr11	juncbase	jcn_only_AD	409860	408893	.	-	.	gene_id "jcn_only_AD.628"; transcript_id "jcn_only_AD.628"; gene_name "CUFF.1975"; flanks "409860-,408893-"; structure "1^,2^"; splice_chain "409860^,409217^"; psi "0.408200";
chr11	juncbase	intron_retention	57003266	57001332	.	-	.	gene_id "intron_retention.593"; transcript_id "intron_retention.593"; gene_name "CUFF.1975"; flanks "57003266-,57001332^"; structure "0,1^2-"; splice_chain ",57003266^57001332-"; psi "0.033500";
chr19	juncbase	intron_retention	50303274	50303354	.	-	.	gene_id "intron_retention.594"; transcript_id "intron_retention.594"; gene_name "CUFF.1975"; flanks "50303274-,50303354^"; structure "0,1^2-"; splice_chain ",50303274^50303354-"; psi "0.032400";
chr7	juncbase	intron_retention	107221090	107221204	.	-	.	gene_id "intron_retention.595"; transcript_id "intron_retention.595"; gene_name "CUFF.1975"; flanks "107221090-,107221204^"; structure "0,1^2-"; splice_chain ",107221090^107221204-"; psi "0.616700";
chr2	juncbase	intron_retention	73226078	73215477	.	-	.	gene_id "intron_retention.596"; transcript_id "intron_retention.596"; gene_name "CUFF.1975"; flanks "73226078-,73215477^"; structure "0,1^2-"; splice_chain ",73226078^73215477-"; psi "0.135900";
chrX	juncbase	jcn_only_AD	9132574	9130945	.	-	.	gene_id "jcn_only_AD.629"; transcript_id "jcn_only_AD.629"; gene_name "CUFF.1975"; flanks "9132574-,9130945-"; structure "1^,2^"; splice_chain "9132574^,9131118^"; psi "0.555574";
chrX	juncbase	jcn_only_AD	9132334	9130945	.	-	.	gene_id "jcn_only_AD.630"; transcript_id "jcn_only_AD.630"; gene_name "CUFF.1975"; flanks "9132334-,9130945-"; structure "1^,2^"; splice_chain "9132334^,9131118^"; psi "0.580784";
chr1	juncbase	intron_retention	158464445	158464344	.	-	.	gene_id "intron_retention.597"; transcript_id "intron_retention.597"; gene_name "CUFF.1975"; flanks "158464445-,158464344^"; structure "0,1^2-"; splice_chain ",158464445^158464344-"; psi "0.344100";
chr14	juncbase	jcn_only_AD	59941446	59939808	.	-	.	gene_id "jcn_only_AD.631"; transcript_id "jcn_only_AD.631"; gene_name "CUFF.1975"; flanks "59941446-,59939808-"; structure "1^,2^"; splice_chain "59941446^,59941157^"; psi "0.067100";
chr8	juncbase	jcn_only_AD	144818108	144822029	.	-	.	gene_id "jcn_only_AD.632"; transcript_id "jcn_only_AD.632"; gene_name "CUFF.1975"; flanks "144818108-,144822029-"; structure "1^,2^"; splice_chain "144818108^,144821673^"; psi "0.138900";
chr11	juncbase	intron_retention	8615630	8486369	.	-	.	gene_id "intron_retention.598"; transcript_id "intron_retention.598"; gene_name "CUFF.1975"; flanks "8615630-,8486369^"; structure "0,1^2-"; splice_chain ",8615630^8486369-"; psi "0.625000";
chr8	juncbase	jcn_only_AD	30671403	30657271	.	-	.	gene_id "jcn_only_AD.633"; transcript_id "jcn_only_AD.633"; gene_name "CUFF.1975"; flanks "30671403-,30657271-"; structure "1^,2^"; splice_chain "30671403^,30667506^"; psi "0.491358";
chr8	juncbase	jcn_only_AD	30669836	30657271	.	-	.	gene_id "jcn_only_AD.634"; transcript_id "jcn_only_AD.634"; gene_name "CUFF.1975"; flanks "30669836-,30657271-"; structure "1^,2^"; splice_chain "30669836^,30667506^"; psi "0.385755";
chr8	juncbase	jcn_only_AA	23190914	23186099	.	-	.	gene_id "jcn_only_AA.498"; transcript_id "jcn_only_AA.498"; gene_name "CUFF.1975"; flanks "23190914^,23186099^"; structure "1-,2-"; splice_chain "23189521-,23186099-"; psi "0.752143";
chr8	juncbase	jcn_only_AA	23190914	23186078	.	-	.	gene_id "jcn_only_AA.499"; transcript_id "jcn_only_AA.499"; gene_name "CUFF.1975"; flanks "23190914^,23186078^"; structure "1-,2-"; splice_chain "23189521-,23186078-"; psi "0.792123";
chr5	juncbase	cassette	137520886	137521650	.	-	.	gene_id "cassette.442"; transcript_id "cassette.442"; gene_name "CUFF.1975"; flanks "137520886^,137521650-"; structure "0,1-2^"; splice_chain ",137521201-137521399^"; psi "0.324100";
chr1	juncbase	intron_retention	156909340	156908305	.	-	.	gene_id "intron_retention.599"; transcript_id "intron_retention.599"; gene_name "CUFF.1975"; flanks "156909340-,156908305^"; structure "0,1^2-"; splice_chain ",156909340^156908305-"; psi "0.098600";
chr11	juncbase	jcn_only_AA	10821637	10821156	.	-	.	gene_id "jcn_only_AA.500"; transcript_id "jcn_only_AA.500"; gene_name "CUFF.1975"; flanks "10821637^,10821156^"; structure "1-,2-"; splice_chain "10821303-,10821156-"; psi "0.389400";
chr14	juncbase	intron_retention	104313879	104206400	.	-	.	gene_id "intron_retention.600"; transcript_id "intron_retention.600"; gene_name "CUFF.1975"; flanks "104313879-,104206400^"; structure "0,1^2-"; splice_chain ",104313879^104206400-"; psi "0.905900";
chr1	juncbase	intron_retention	28661597	28662305	.	-	.	gene_id "intron_retention.601"; transcript_id "intron_retention.601"; gene_name "CUFF.1975"; flanks "28661597-,28662305^"; structure "0,1^2-"; splice_chain ",28661597^28662305-"; psi "0.791400";
chr1	juncbase	jcn_only_AD	106146785	106132407	.	-	.	gene_id "jcn_only_AD.635"; transcript_id "jcn_only_AD.635"; gene_name "CUFF.1975"; flanks "106146785-,106132407-"; structure "1^,2^"; splice_chain "106146785^,106143253^"; psi "0.642357";
chr1	juncbase	jcn_only_AD	106145899	106132407	.	-	.	gene_id "jcn_only_AD.636"; transcript_id "jcn_only_AD.636"; gene_name "CUFF.1975"; flanks "106145899-,106132407-"; structure "1^,2^"; splice_chain "106145899^,106143253^"; psi "0.627172";
chr1	juncbase	jcn_only_AD	106143892	106132407	.	-	.	gene_id "jcn_only_AD.637"; transcript_id "jcn_only_AD.637"; gene_name "CUFF.1975"; flanks "106143892-,106132407-"; structure "1^,2^"; splice_chain "106143892^,106143253^"; psi "0.450044";
chr14	juncbase	cassette	76201632	76211438	.	-	.	gene_id "cassette.443"; transcript_id "cassette.443"; gene_name "CUFF.1975"; flanks "76201632^,76211438-"; structure "0,1-2^"; splice_chain ",76203909-76203950^"; psi "0.418600";
chr4	juncbase	jcn_only_AA	130701254	130724147	.	-	.	gene_id "jcn_only_AA.501"; transcript_id "jcn_only_AA.501"; gene_name "CUFF.1975"; flanks "130701254^,130724147^"; structure "1-,2-"; splice_chain "130710067-,130724147-"; psi "0.173100";
chr16	juncbase	cassette	2200052	2201570	.	-	.	gene_id "cassette.444"; transcript_id "cassette.444"; gene_name "CUFF.1975"; flanks "2200052^,2201570-"; structure "0,1-2^"; splice_chain ",2201131-2201316^"; psi "0.381600";
chrX	juncbase	intron_retention	19933763	19933167	.	-	.	gene_id "intron_retention.602"; transcript_id "intron_retention.602"; gene_name "CUFF.1975"; flanks "19933763-,19933167^"; structure "0,1^2-"; splice_chain ",19933763^19933167-"; psi "0.369000";
chr8	juncbase	jcn_only_AD	82192909	82195601	.	-	.	gene_id "jcn_only_AD.638"; transcript_id "jcn_only_AD.638"; gene_name "CUFF.1975"; flanks "82192909-,82195601-"; structure "1^,2^"; splice_chain "82192909^,82193548^"; psi "0.859900";
chr9	juncbase	jcn_only_AA	43853616	43861003	.	-	.	gene_id "jcn_only_AA.502"; transcript_id "jcn_only_AA.502"; gene_name "CUFF.1975"; flanks "43853616^,43861003^"; structure "1-,2-"; splice_chain "43854069-,43861003-"; psi "0.592644";
chr9	juncbase	jcn_only_AA	43853616	43861006	.	-	.	gene_id "jcn_only_AA.503"; transcript_id "jcn_only_AA.503"; gene_name "CUFF.1975"; flanks "43853616^,43861006^"; structure "1-,2-"; splice_chain "43854069-,43861006-"; psi "0.484424";
chr11	juncbase	intron_retention	406349	406059	.	-	.	gene_id "intron_retention.603"; transcript_id "intron_retention.603"; gene_name "CUFF.1975"; flanks "406349-,406059^"; structure "0,1^2-"; splice_chain ",406349^406059-"; psi "0.290300";
chr3	juncbase	jcn_only_AD	49362135	49354911	.	-	.	gene_id "jcn_only_AD.639"; transcript_id "jcn_only_AD.639"; gene_name "CUFF.1975"; flanks "49362135-,49354911-"; structure "1^,2^"; splice_chain "49362135^,49355742^"; psi "0.797100";
chr6	juncbase	intron_retention	43481097	43480836	.	-	.	gene_id "intron_retention.604"; transcript_id "intron_retention.604"; gene_name "CUFF.1975"; flanks "43481097-,43480836^"; structure "0,1^2-"; splice_chain ",43481097^43480836-"; psi "0.973900";
chr14	juncbase	jcn_only_AD	75139534	75138186	.	-	.	gene_id "jcn_only_AD.640"; transcript_id "jcn_only_AD.640"; gene_name "CUFF.1975"; flanks "75139534-,75138186-"; structure "1^,2^"; splice_chain "75139534^,75138672^"; psi "0.623100";
chr19	juncbase	jcn_only_AA	49117965	49116564	.	-	.	gene_id "jcn_only_AA.504"; transcript_id "jcn_only_AA.504"; gene_name "CUFF.1975"; flanks "49117965^,49116564^"; structure "1-,2-"; splice_chain "49117884-,49116564-"; psi "0.133900";
chr3	juncbase	jcn_only_AD	156266694	156262228	.	-	.	gene_id "jcn_only_AD.641"; transcript_id "jcn_only_AD.641"; gene_name "CUFF.1975"; flanks "156266694-,156262228-"; structure "1^,2^"; splice_chain "156266694^,156266594^"; psi "0.814433";
chr3	juncbase	jcn_only_AD	156266655	156262228	.	-	.	gene_id "jcn_only_AD.642"; transcript_id "jcn_only_AD.642"; gene_name "CUFF.1975"; flanks "156266655-,156262228-"; structure "1^,2^"; splice_chain "156266655^,156266594^"; psi "0.142857";
chr15	juncbase	intron_retention	74753759	74754224	.	-	.	gene_id "intron_retention.605"; transcript_id "intron_retention.605"; gene_name "CUFF.1975"; flanks "74753759-,74754224^"; structure "0,1^2-"; splice_chain ",74753759^74754224-"; psi "0.658300";
chr15	juncbase	intron_retention	77713176	77750796	.	-	.	gene_id "intron_retention.606"; transcript_id "intron_retention.606"; gene_name "CUFF.1975"; flanks "77713176-,77750796^"; structure "0,1^2-"; splice_chain ",77713176^77750796-"; psi "0.633200";
chr17	juncbase	intron_retention	80417948	80426640	.	-	.	gene_id "intron_retention.607"; transcript_id "intron_retention.607"; gene_name "CUFF.1975"; flanks "80417948-,80426640^"; structure "0,1^2-"; splice_chain ",80417948^80426640-"; psi "0.211400";
chr6	juncbase	cassette	161529891	161530787	.	-	.	gene_id "cassette.445"; transcript_id "cassette.445"; gene_name "CUFF.1975"; flanks "161529891^,161530787-"; structure "0,1-2^"; splice_chain ",161529983-161530073^"; psi "0.188700";
chr3	juncbase	cassette	57570111	57563114	.	-	.	gene_id "cassette.446"; transcript_id "cassette.446"; gene_name "CUFF.1975"; flanks "57570111^,57563114-"; structure "0,1-2^"; splice_chain ",57569734-57569625^"; psi "0.665200";
chr3	juncbase	cassette	57582801	57563114	.	-	.	gene_id "cassette.447"; transcript_id "cassette.447"; gene_name "CUFF.1975"; flanks "57582801^,57563114-"; structure "0,1-2^"; splice_chain ",57569734-57569625^"; psi "0.665200";
chr7	juncbase	cassette	107224427	107236312	.	-	.	gene_id "cassette.448"; transcript_id "cassette.448"; gene_name "CUFF.1975"; flanks "107224427^,107236312-"; structure "0,1-2^"; splice_chain ",107234400-107234550^"; psi "0.886600";
chr15	juncbase	intron_retention	44858415	44858207	.	-	.	gene_id "intron_retention.608"; transcript_id "intron_retention.608"; gene_name "CUFF.1975"; flanks "44858415-,44858207^"; structure "0,1^2-"; splice_chain ",44858415^44858207-"; psi "0.038100";
chr14	juncbase	cassette	61518853	61545528	.	-	.	gene_id "cassette.449"; transcript_id "cassette.449"; gene_name "CUFF.1975"; flanks "61518853^,61545528-"; structure "0,1-2^"; splice_chain ",61519067-61519703^"; psi "0.791000";
chr21	juncbase	intron_retention	15688689	15689794	.	-	.	gene_id "intron_retention.609"; transcript_id "intron_retention.609"; gene_name "CUFF.1975"; flanks "15688689-,15689794^"; structure "0,1^2-"; splice_chain ",15688689^15689794-"; psi "0.838700";
chr14	juncbase	jcn_only_AD	50067415	50074118	.	-	.	gene_id "jcn_only_AD.643"; transcript_id "jcn_only_AD.643"; gene_name "CUFF.1975"; flanks "50067415-,50074118-"; structure "1^,2^"; splice_chain "50067415^,50069186^"; psi "0.288720";
chrX	juncbase	jcn_only_AA	119378619	119312411	.	-	.	gene_id "jcn_only_AA.505"; transcript_id "jcn_only_AA.505"; gene_name "CUFF.1975"; flanks "119378619^,119312411^"; structure "1-,2-"; splice_chain "119355497-,119312411-"; psi "0.754386";
chrX	juncbase	jcn_only_AA	119378619	119271099	.	-	.	gene_id "jcn_only_AA.506"; transcript_id "jcn_only_AA.506"; gene_name "CUFF.1975"; flanks "119378619^,119271099^"; structure "1-,2-"; splice_chain "119355497-,119271099-"; psi "0.562500";
chr15	juncbase	jcn_only_AA	90380847	90378745	.	-	.	gene_id "jcn_only_AA.507"; transcript_id "jcn_only_AA.507"; gene_name "CUFF.1975"; flanks "90380847^,90378745^"; structure "1-,2-"; splice_chain "90378875-,90378745-"; psi "0.057000";
chr19	juncbase	jcn_only_AA	34001934	33984243	.	-	.	gene_id "jcn_only_AA.508"; transcript_id "jcn_only_AA.508"; gene_name "CUFF.1975"; flanks "34001934^,33984243^"; structure "1-,2-"; splice_chain "33991907-,33984243-"; psi "0.090500";
chr11	juncbase	intron_retention	118925897	118925772	.	-	.	gene_id "intron_retention.610"; transcript_id "intron_retention.610"; gene_name "CUFF.1975"; flanks "118925897-,118925772^"; structure "0,1^2-"; splice_chain ",118925897^118925772-"; psi "0.057600";
chr6	juncbase	intron_retention	31930575	31930762	.	-	.	gene_id "intron_retention.611"; transcript_id "intron_retention.611"; gene_name "CUFF.1975"; flanks "31930575-,31930762^"; structure "0,1^2-"; splice_chain ",31930575^31930762-"; psi "0.024400";
chr8	juncbase	jcn_only_AA	99057171	99054946	.	-	.	gene_id "jcn_only_AA.509"; transcript_id "jcn_only_AA.509"; gene_name "CUFF.1975"; flanks "99057171^,99054946^"; structure "1-,2-"; splice_chain "99055003-,99054946-"; psi "0.482740";
chr8	juncbase	jcn_only_AA	99057171	99037966	.	-	.	gene_id "jcn_only_AA.510"; transcript_id "jcn_only_AA.510"; gene_name "CUFF.1975"; flanks "99057171^,99037966^"; structure "1-,2-"; splice_chain "99055003-,99037966-"; psi "0.107077";
chr10	juncbase	jcn_only_AA	70661227	70666040	.	-	.	gene_id "jcn_only_AA.511"; transcript_id "jcn_only_AA.511"; gene_name "CUFF.1975"; flanks "70661227^,70666040^"; structure "1-,2-"; splice_chain "70665982-,70666040-"; psi "0.250000";
chr2	juncbase	intron_retention	3469466	3481463	.	-	.	gene_id "intron_retention.612"; transcript_id "intron_retention.612"; gene_name "CUFF.1975"; flanks "3469466-,3481463^"; structure "0,1^2-"; splice_chain ",3469466^3481463-"; psi "0.419400";
chr19	juncbase	intron_retention	1440252	1440348	.	-	.	gene_id "intron_retention.613"; transcript_id "intron_retention.613"; gene_name "CUFF.1975"; flanks "1440252-,1440348^"; structure "0,1^2-"; splice_chain ",1440252^1440348-"; psi "0.099500";
chr9	juncbase	jcn_only_AD	117350200	117354832	.	-	.	gene_id "jcn_only_AD.644"; transcript_id "jcn_only_AD.644"; gene_name "CUFF.1975"; flanks "117350200-,117354832-"; structure "1^,2^"; splice_chain "117350200^,117350398^"; psi "0.413000";
chr2	juncbase	intron_retention	3469466	3482617	.	-	.	gene_id "intron_retention.614"; transcript_id "intron_retention.614"; gene_name "CUFF.1975"; flanks "3469466-,3482617^"; structure "0,1^2-"; splice_chain ",3469466^3482617-"; psi "0.292000";
chr2	juncbase	jcn_only_AA	73285657	73269714	.	-	.	gene_id "jcn_only_AA.512"; transcript_id "jcn_only_AA.512"; gene_name "CUFF.1975"; flanks "73285657^,73269714^"; structure "1-,2-"; splice_chain "73277028-,73269714-"; psi "0.188113";
chr2	juncbase	jcn_only_AA	73285657	73268790	.	-	.	gene_id "jcn_only_AA.513"; transcript_id "jcn_only_AA.513"; gene_name "CUFF.1975"; flanks "73285657^,73268790^"; structure "1-,2-"; splice_chain "73277028-,73268790-"; psi "0.257727";
chr2	juncbase	jcn_only_AA	73285657	73268060	.	-	.	gene_id "jcn_only_AA.514"; transcript_id "jcn_only_AA.514"; gene_name "CUFF.1975"; flanks "73285657^,73268060^"; structure "1-,2-"; splice_chain "73277028-,73268060-"; psi "0.830968";
chr10	juncbase	jcn_only_AA	35360127	35351990	.	-	.	gene_id "jcn_only_AA.515"; transcript_id "jcn_only_AA.515"; gene_name "CUFF.1975"; flanks "35360127^,35351990^"; structure "1-,2-"; splice_chain "35353044-,35351990-"; psi "0.722200";
chr19	juncbase	cassette	41939442	41938313	.	-	.	gene_id "cassette.450"; transcript_id "cassette.450"; gene_name "CUFF.1975"; flanks "41939442^,41938313-"; structure "0,1-2^"; splice_chain ",41939339-41939177^"; psi "0.691100";
chr10	juncbase	jcn_only_AA	124157490	124172436	.	-	.	gene_id "jcn_only_AA.516"; transcript_id "jcn_only_AA.516"; gene_name "CUFF.1975"; flanks "124157490^,124172436^"; structure "1-,2-"; splice_chain "124159859-,124172436-"; psi "0.095200";
chr7	juncbase	jcn_only_AA	107575860	107572822	.	-	.	gene_id "jcn_only_AA.517"; transcript_id "jcn_only_AA.517"; gene_name "CUFF.1975"; flanks "107575860^,107572822^"; structure "1-,2-"; splice_chain "107572938-,107572822-"; psi "0.287000";
chr17	juncbase	cassette	40739852	40738155	.	-	.	gene_id "cassette.451"; transcript_id "cassette.451"; gene_name "CUFF.1975"; flanks "40739852^,40738155-"; structure "0,1-2^"; splice_chain ",40738909-40738783^"; psi "0.821100";
chr11	juncbase	intron_retention	10828367	10827594	.	-	.	gene_id "intron_retention.615"; transcript_id "intron_retention.615"; gene_name "CUFF.1975"; flanks "10828367-,10827594^"; structure "0,1^2-"; splice_chain ",10828367^10827594-"; psi "0.304700";
chr16	juncbase	intron_retention	3117416	3117555	.	-	.	gene_id "intron_retention.616"; transcript_id "intron_retention.616"; gene_name "CUFF.1975"; flanks "3117416-,3117555^"; structure "0,1^2-"; splice_chain ",3117416^3117555-"; psi "0.265500";
chr15	juncbase	cassette	64673157	64658274	.	-	.	gene_id "cassette.452"; transcript_id "cassette.452"; gene_name "CUFF.1975"; flanks "64673157^,64658274-"; structure "0,1-2^"; splice_chain ",64669104-64668942^"; psi "0.963900";
chr11	juncbase	intron_retention	119056874	119057188	.	-	.	gene_id "intron_retention.617"; transcript_id "intron_retention.617"; gene_name "CUFF.1975"; flanks "119056874-,119057188^"; structure "0,1^2-"; splice_chain ",119056874^119057188-"; psi "0.431000";
chr6	juncbase	jcn_only_AA	33240503	33243574	.	-	.	gene_id "jcn_only_AA.518"; transcript_id "jcn_only_AA.518"; gene_name "CUFF.1975"; flanks "33240503^,33243574^"; structure "1-,2-"; splice_chain "33243277-,33243574-"; psi "0.881900";
chr12	juncbase	cassette	58018389	58018649	.	-	.	gene_id "cassette.453"; transcript_id "cassette.453"; gene_name "CUFF.1975"; flanks "58018389^,58018649-"; structure "0,1-2^"; splice_chain ",58018507-58018576^"; psi "0.033200";
chr19	juncbase	cassette	11541719	11537860	.	-	.	gene_id "cassette.454"; transcript_id "cassette.454"; gene_name "CUFF.1975"; flanks "11541719^,11537860-"; structure "0,1-2^"; splice_chain ",11541596-11541519^"; psi "0.587700";
chrX	juncbase	cassette	114364718	114358565	.	-	.	gene_id "cassette.455"; transcript_id "cassette.455"; gene_name "CUFF.1975"; flanks "114364718^,114358565-"; structure "0,1-2^"; splice_chain ",114361456-114361406^"; psi "0.138900";
chr19	juncbase	cassette	49314241	49310331	.	-	.	gene_id "cassette.456"; transcript_id "cassette.456"; gene_name "CUFF.1975"; flanks "49314241^,49310331-"; structure "0,1-2^"; splice_chain ",49311568-49311013^"; psi "0.773900";
chr6	juncbase	jcn_only_AD	90326376	90331641	.	-	.	gene_id "jcn_only_AD.645"; transcript_id "jcn_only_AD.645"; gene_name "CUFF.1975"; flanks "90326376-,90331641-"; structure "1^,2^"; splice_chain "90326376^,90327750^"; psi "0.317800";
chr12	juncbase	jcn_only_AA	369017	347176	.	-	.	gene_id "jcn_only_AA.519"; transcript_id "jcn_only_AA.519"; gene_name "CUFF.1975"; flanks "369017^,347176^"; structure "1-,2-"; splice_chain "352979-,347176-"; psi "0.680200";
chr16	juncbase	jcn_only_AA	19710970	19716438	.	-	.	gene_id "jcn_only_AA.520"; transcript_id "jcn_only_AA.520"; gene_name "CUFF.1975"; flanks "19710970^,19716438^"; structure "1-,2-"; splice_chain "19711700-,19716438-"; psi "0.018000";
chr19	juncbase	jcn_only_AD	6199491	6192040	.	-	.	gene_id "jcn_only_AD.646"; transcript_id "jcn_only_AD.646"; gene_name "CUFF.1975"; flanks "6199491-,6192040-"; structure "1^,2^"; splice_chain "6199491^,6199487^"; psi "0.802000";
chr6	juncbase	jcn_only_AD	31927177	31928818	.	-	.	gene_id "jcn_only_AD.647"; transcript_id "jcn_only_AD.647"; gene_name "CUFF.1975"; flanks "31927177-,31928818-"; structure "1^,2^"; splice_chain "31927177^,31928517^"; psi "0.058000";
chr9	juncbase	jcn_only_AA	131483930	131483759	.	-	.	gene_id "jcn_only_AA.521"; transcript_id "jcn_only_AA.521"; gene_name "CUFF.1975"; flanks "131483930^,131483759^"; structure "1-,2-"; splice_chain "131483781-,131483759-"; psi "0.114603";
chr2	juncbase	jcn_only_AA	153476232	153481952	.	-	.	gene_id "jcn_only_AA.522"; transcript_id "jcn_only_AA.522"; gene_name "CUFF.1975"; flanks "153476232^,153481952^"; structure "1-,2-"; splice_chain "153479051-,153481952-"; psi "0.592300";
chr14	juncbase	jcn_only_AD	61448409	61449226	.	-	.	gene_id "jcn_only_AD.648"; transcript_id "jcn_only_AD.648"; gene_name "CUFF.1975"; flanks "61448409-,61449226-"; structure "1^,2^"; splice_chain "61448409^,61448961^"; psi "0.545673";
chr14	juncbase	jcn_only_AD	61448100	61449226	.	-	.	gene_id "jcn_only_AD.649"; transcript_id "jcn_only_AD.649"; gene_name "CUFF.1975"; flanks "61448100-,61449226-"; structure "1^,2^"; splice_chain "61448100^,61448961^"; psi "0.930769";
chr14	juncbase	jcn_only_AD	61448405	61449226	.	-	.	gene_id "jcn_only_AD.650"; transcript_id "jcn_only_AD.650"; gene_name "CUFF.1975"; flanks "61448405-,61449226-"; structure "1^,2^"; splice_chain "61448405^,61448961^"; psi "0.662901";
chr16	juncbase	cassette	31374695	31382405	.	-	.	gene_id "cassette.457"; transcript_id "cassette.457"; gene_name "CUFF.1975"; flanks "31374695^,31382405-"; structure "0,1-2^"; splice_chain ",31381302-31381419^"; psi "0.117600";
chr14	juncbase	intron_retention	61448100	61449226	.	-	.	gene_id "intron_retention.618"; transcript_id "intron_retention.618"; gene_name "CUFF.1975"; flanks "61448100-,61449226^"; structure "0,1^2-"; splice_chain ",61448100^61449226-"; psi "0.096200";
chr17	juncbase	intron_retention	61905283	61905498	.	-	.	gene_id "intron_retention.619"; transcript_id "intron_retention.619"; gene_name "CUFF.1975"; flanks "61905283-,61905498^"; structure "0,1^2-"; splice_chain ",61905283^61905498-"; psi "0.275100";
chr11	juncbase	jcn_only_AA	558856	558766	.	-	.	gene_id "jcn_only_AA.523"; transcript_id "jcn_only_AA.523"; gene_name "CUFF.1975"; flanks "558856^,558766^"; structure "1-,2-"; splice_chain "558784-,558766-"; psi "0.600000";
chr10	juncbase	jcn_only_AA	73975965	73973089	.	-	.	gene_id "jcn_only_AA.524"; transcript_id "jcn_only_AA.524"; gene_name "CUFF.1975"; flanks "73975965^,73973089^"; structure "1-,2-"; splice_chain "73973109-,73973089-"; psi "0.749196";
chr10	juncbase	jcn_only_AA	73975965	73973035	.	-	.	gene_id "jcn_only_AA.525"; transcript_id "jcn_only_AA.525"; gene_name "CUFF.1975"; flanks "73975965^,73973035^"; structure "1-,2-"; splice_chain "73973109-,73973035-"; psi "0.794237";
chr15	juncbase	jcn_only_AA	40558696	40564425	.	-	.	gene_id "jcn_only_AA.526"; transcript_id "jcn_only_AA.526"; gene_name "CUFF.1975"; flanks "40558696^,40564425^"; structure "1-,2-"; splice_chain "40559124-,40564425-"; psi "0.854500";
chr14	juncbase	jcn_only_AA	76241973	76243090	.	-	.	gene_id "jcn_only_AA.527"; transcript_id "jcn_only_AA.527"; gene_name "CUFF.1975"; flanks "76241973^,76243090^"; structure "1-,2-"; splice_chain "76243048-,76243090-"; psi "0.686700";
chr19	juncbase	intron_retention	17449550	17449932	.	-	.	gene_id "intron_retention.620"; transcript_id "intron_retention.620"; gene_name "CUFF.1975"; flanks "17449550-,17449932^"; structure "0,1^2-"; splice_chain ",17449550^17449932-"; psi "0.889800";
chr3	juncbase	jcn_only_AD	141868025	141820683	.	-	.	gene_id "jcn_only_AD.651"; transcript_id "jcn_only_AD.651"; gene_name "CUFF.1975"; flanks "141868025-,141820683-"; structure "1^,2^"; splice_chain "141868025^,141844991^"; psi "0.847500";
chr3	juncbase	jcn_only_AA	107594977	107586272	.	-	.	gene_id "jcn_only_AA.528"; transcript_id "jcn_only_AA.528"; gene_name "CUFF.1975"; flanks "107594977^,107586272^"; structure "1-,2-"; splice_chain "107591873-,107586272-"; psi "0.114605";
chr11	juncbase	cassette	118532599	118532218	.	-	.	gene_id "cassette.458"; transcript_id "cassette.458"; gene_name "CUFF.1975"; flanks "118532599^,118532218-"; structure "0,1-2^"; splice_chain ",118532438-118532346^"; psi "0.807800";
chr8	juncbase	intron_retention	80963762	80954903	.	-	.	gene_id "intron_retention.621"; transcript_id "intron_retention.621"; gene_name "CUFF.1975"; flanks "80963762-,80954903^"; structure "0,1^2-"; splice_chain ",80963762^80954903-"; psi "0.046700";
chr1	juncbase	cassette	150249040	150253246	.	-	.	gene_id "cassette.459"; transcript_id "cassette.459"; gene_name "CUFF.1975"; flanks "150249040^,150253246-"; structure "0,1-2^"; splice_chain ",150252054-150252152^"; psi "0.370000";
chr12	juncbase	cassette	7125578	7092700	.	-	.	gene_id "cassette.460"; transcript_id "cassette.460"; gene_name "CUFF.1975"; flanks "7125578^,7092700-"; structure "0,1-2^"; splice_chain ",7108791-7108733^"; psi "0.230300";
chr1	juncbase	jcn_only_AA	207277775	207286346	.	-	.	gene_id "jcn_only_AA.529"; transcript_id "jcn_only_AA.529"; gene_name "CUFF.1975"; flanks "207277775^,207286346^"; structure "1-,2-"; splice_chain "207286244-,207286346-"; psi "0.759300";
chr12	juncbase	jcn_only_AD	120222764	120221855	.	-	.	gene_id "jcn_only_AD.652"; transcript_id "jcn_only_AD.652"; gene_name "CUFF.1975"; flanks "120222764-,120221855-"; structure "1^,2^"; splice_chain "120222764^,120221993^"; psi "0.875000";
chr12	juncbase	jcn_only_AD	4653070	4654948	.	-	.	gene_id "jcn_only_AD.653"; transcript_id "jcn_only_AD.653"; gene_name "CUFF.1975"; flanks "4653070-,4654948-"; structure "1^,2^"; splice_chain "4653070^,4654478^"; psi "0.473200";
chr2	juncbase	jcn_only_AA	175243651	175216453	.	-	.	gene_id "jcn_only_AA.530"; transcript_id "jcn_only_AA.530"; gene_name "CUFF.1975"; flanks "175243651^,175216453^"; structure "1-,2-"; splice_chain "175223264-,175216453-"; psi "0.203740";
chr12	juncbase	intron_retention	52407564	52407661	.	-	.	gene_id "intron_retention.622"; transcript_id "intron_retention.622"; gene_name "CUFF.1975"; flanks "52407564-,52407661^"; structure "0,1^2-"; splice_chain ",52407564^52407661-"; psi "0.265200";
chr15	juncbase	intron_retention	83357910	83350332	.	-	.	gene_id "intron_retention.623"; transcript_id "intron_retention.623"; gene_name "CUFF.1975"; flanks "83357910-,83350332^"; structure "0,1^2-"; splice_chain ",83357910^83350332-"; psi "0.973300";
chr9	juncbase	intron_retention	125047566	125048059	.	-	.	gene_id "intron_retention.624"; transcript_id "intron_retention.624"; gene_name "CUFF.1975"; flanks "125047566-,125048059^"; structure "0,1^2-"; splice_chain ",125047566^125048059-"; psi "0.268900";
chr2	juncbase	jcn_only_AA	4021135	4020664	.	-	.	gene_id "jcn_only_AA.531"; transcript_id "jcn_only_AA.531"; gene_name "CUFF.1975"; flanks "4021135^,4020664^"; structure "1-,2-"; splice_chain "4020692-,4020664-"; psi "0.534116";
chr2	juncbase	jcn_only_AA	4021135	4009393	.	-	.	gene_id "jcn_only_AA.532"; transcript_id "jcn_only_AA.532"; gene_name "CUFF.1975"; flanks "4021135^,4009393^"; structure "1-,2-"; splice_chain "4020692-,4009393-"; psi "0.477931";
chr2	juncbase	jcn_only_AA	4021135	4015878	.	-	.	gene_id "jcn_only_AA.533"; transcript_id "jcn_only_AA.533"; gene_name "CUFF.1975"; flanks "4021135^,4015878^"; structure "1-,2-"; splice_chain "4020692-,4015878-"; psi "0.356417";
chr2	juncbase	jcn_only_AA	4021135	4009484	.	-	.	gene_id "jcn_only_AA.534"; transcript_id "jcn_only_AA.534"; gene_name "CUFF.1975"; flanks "4021135^,4009484^"; structure "1-,2-"; splice_chain "4020692-,4009484-"; psi "0.398253";
chr3	juncbase	jcn_only_AA	186790735	186791947	.	-	.	gene_id "jcn_only_AA.535"; transcript_id "jcn_only_AA.535"; gene_name "CUFF.1975"; flanks "186790735^,186791947^"; structure "1-,2-"; splice_chain "186791193-,186791947-"; psi "0.928200";
chr19	juncbase	jcn_only_AA	33978156	33968995	.	-	.	gene_id "jcn_only_AA.536"; transcript_id "jcn_only_AA.536"; gene_name "CUFF.1975"; flanks "33978156^,33968995^"; structure "1-,2-"; splice_chain "33968996-,33968995-"; psi "0.000600";
chr19	juncbase	jcn_only_AA	56343329	56321704	.	-	.	gene_id "jcn_only_AA.537"; transcript_id "jcn_only_AA.537"; gene_name "CUFF.1975"; flanks "56343329^,56321704^"; structure "1-,2-"; splice_chain "56329602-,56321704-"; psi "0.759000";
chr12	juncbase	intron_retention	56708635	56705179	.	-	.	gene_id "intron_retention.625"; transcript_id "intron_retention.625"; gene_name "CUFF.1975"; flanks "56708635-,56705179^"; structure "0,1^2-"; splice_chain ",56708635^56705179-"; psi "0.943300";
chr18	juncbase	cassette	163453	180236	.	-	.	gene_id "cassette.461"; transcript_id "cassette.461"; gene_name "CUFF.1975"; flanks "163453^,180236-"; structure "0,1-2^"; splice_chain ",166787-166819^"; psi "0.658700";
chr2	juncbase	jcn_only_AD	208013706	207989128	.	-	.	gene_id "jcn_only_AD.654"; transcript_id "jcn_only_AD.654"; gene_name "CUFF.1975"; flanks "208013706-,207989128-"; structure "1^,2^"; splice_chain "208013706^,207998791^"; psi "0.201765";
chr2	juncbase	jcn_only_AD	208030191	207989128	.	-	.	gene_id "jcn_only_AD.655"; transcript_id "jcn_only_AD.655"; gene_name "CUFF.1975"; flanks "208030191-,207989128-"; structure "1^,2^"; splice_chain "208030191^,207998791^"; psi "0.778717";
chr2	juncbase	jcn_only_AD	208031864	207989128	.	-	.	gene_id "jcn_only_AD.656"; transcript_id "jcn_only_AD.656"; gene_name "CUFF.1975"; flanks "208031864-,207989128-"; structure "1^,2^"; splice_chain "208031864^,207998791^"; psi "0.202085";
chr6	juncbase	cassette	304661	335114	.	-	.	gene_id "cassette.462"; transcript_id "cassette.462"; gene_name "CUFF.1975"; flanks "304661^,335114-"; structure "0,1-2^"; splice_chain ",311880-311962^"; psi "0.571000";
chr6	juncbase	cassette	292560	345854	.	-	.	gene_id "cassette.463"; transcript_id "cassette.463"; gene_name "CUFF.1975"; flanks "292560^,345854-"; structure "0,1-2^"; splice_chain ",311880-311962^"; psi "0.571000";
chr17	juncbase	jcn_only_AA	15586350	15584536	.	-	.	gene_id "jcn_only_AA.538"; transcript_id "jcn_only_AA.538"; gene_name "CUFF.1975"; flanks "15586350^,15584536^"; structure "1-,2-"; splice_chain "15586265-,15584536-"; psi "0.063030";
chr17	juncbase	jcn_only_AA	15586350	15584267	.	-	.	gene_id "jcn_only_AA.539"; transcript_id "jcn_only_AA.539"; gene_name "CUFF.1975"; flanks "15586350^,15584267^"; structure "1-,2-"; splice_chain "15586265-,15584267-"; psi "0.475517";
chr16	juncbase	intron_retention	75576500	75575353	.	-	.	gene_id "intron_retention.626"; transcript_id "intron_retention.626"; gene_name "CUFF.1975"; flanks "75576500-,75575353^"; structure "0,1^2-"; splice_chain ",75576500^75575353-"; psi "0.158300";
chr1	juncbase	cassette	32541423	32557276	.	-	.	gene_id "cassette.464"; transcript_id "cassette.464"; gene_name "CUFF.1975"; flanks "32541423^,32557276-"; structure "0,1-2^"; splice_chain ",32542364-32542447^"; psi "0.797900";
chr1	juncbase	cassette	32541423	32542765	.	-	.	gene_id "cassette.465"; transcript_id "cassette.465"; gene_name "CUFF.1975"; flanks "32541423^,32542765-"; structure "0,1-2^"; splice_chain ",32542364-32542447^"; psi "0.797900";
chr19	juncbase	jcn_only_AD	17447966	17448683	.	-	.	gene_id "jcn_only_AD.657"; transcript_id "jcn_only_AD.657"; gene_name "CUFF.1975"; flanks "17447966-,17448683-"; structure "1^,2^"; splice_chain "17447966^,17448473^"; psi "0.464900";
chr15	juncbase	jcn_only_AA	74771619	74773392	.	-	.	gene_id "jcn_only_AA.540"; transcript_id "jcn_only_AA.540"; gene_name "CUFF.1975"; flanks "74771619^,74773392^"; structure "1-,2-"; splice_chain "74772962-,74773392-"; psi "0.808000";
chr2	juncbase	cassette	4007506	4006531	.	-	.	gene_id "cassette.466"; transcript_id "cassette.466"; gene_name "CUFF.1975"; flanks "4007506^,4006531-"; structure "0,1-2^"; splice_chain ",4007364-4007154^"; psi "0.967400";
chr17	juncbase	intron_retention	46990327	46993438	.	-	.	gene_id "intron_retention.627"; transcript_id "intron_retention.627"; gene_name "CUFF.1975"; flanks "46990327-,46993438^"; structure "0,1^2-"; splice_chain ",46990327^46993438-"; psi "0.467000";
chr17	juncbase	intron_retention	1945169	1946270	.	-	.	gene_id "intron_retention.628"; transcript_id "intron_retention.628"; gene_name "CUFF.1975"; flanks "1945169-,1946270^"; structure "0,1^2-"; splice_chain ",1945169^1946270-"; psi "0.390400";
chr22	juncbase	cassette	29669853	29674019	.	-	.	gene_id "cassette.467"; transcript_id "cassette.467"; gene_name "CUFF.1975"; flanks "29669853^,29674019-"; structure "0,1-2^"; splice_chain ",29670254-29670271^"; psi "0.270200";
chr5	juncbase	intron_retention	134191017	134193047	.	-	.	gene_id "intron_retention.629"; transcript_id "intron_retention.629"; gene_name "CUFF.1975"; flanks "134191017-,134193047^"; structure "0,1^2-"; splice_chain ",134191017^134193047-"; psi "0.917400";
chr19	juncbase	cassette	14883154	14876616	.	-	.	gene_id "cassette.468"; transcript_id "cassette.468"; gene_name "CUFF.1975"; flanks "14883154^,14876616-"; structure "0,1-2^"; splice_chain ",14877921-14877790^"; psi "0.913700";
chr22	juncbase	cassette	45198044	45210552	.	-	.	gene_id "cassette.469"; transcript_id "cassette.469"; gene_name "CUFF.1975"; flanks "45198044^,45210552-"; structure "0,1-2^"; splice_chain ",45204187-45204318^"; psi "0.984600";
chr19	juncbase	intron_retention	50309198	50309376	.	-	.	gene_id "intron_retention.630"; transcript_id "intron_retention.630"; gene_name "CUFF.1975"; flanks "50309198-,50309376^"; structure "0,1^2-"; splice_chain ",50309198^50309376-"; psi "0.033500";
chr17	juncbase	cassette	47304009	47302493	.	-	.	gene_id "cassette.470"; transcript_id "cassette.470"; gene_name "CUFF.1975"; flanks "47304009^,47302493-"; structure "0,1-2^"; splice_chain ",47303139-47303018^"; psi "0.185200";
chr5	juncbase	cassette	131658048	131662970	.	-	.	gene_id "cassette.471"; transcript_id "cassette.471"; gene_name "CUFF.1975"; flanks "131658048^,131662970-"; structure "0,1-2^"; splice_chain ",131660154-131660335^"; psi "0.270800";
chr16	juncbase	intron_retention	1372489	1370459	.	-	.	gene_id "intron_retention.631"; transcript_id "intron_retention.631"; gene_name "CUFF.1975"; flanks "1372489-,1370459^"; structure "0,1^2-"; splice_chain ",1372489^1370459-"; psi "0.385900";
chr3	juncbase	cassette	173632680	173628659	.	-	.	gene_id "cassette.472"; transcript_id "cassette.472"; gene_name "CUFF.1975"; flanks "173632680^,173628659-"; structure "0,1-2^"; splice_chain ",173630407-173630336^"; psi "0.422200";
chr11	juncbase	intron_retention	63999436	64001366	.	-	.	gene_id "intron_retention.632"; transcript_id "intron_retention.632"; gene_name "CUFF.1975"; flanks "63999436-,64001366^"; structure "0,1^2-"; splice_chain ",63999436^64001366-"; psi "0.857100";
chr12	juncbase	jcn_only_AA	48293620	48272898	.	-	.	gene_id "jcn_only_AA.541"; transcript_id "jcn_only_AA.541"; gene_name "CUFF.1975"; flanks "48293620^,48272898^"; structure "1-,2-"; splice_chain "48276557-,48272898-"; psi "0.161800";
chr1	juncbase	jcn_only_AA	11083386	11084359	.	-	.	gene_id "jcn_only_AA.542"; transcript_id "jcn_only_AA.542"; gene_name "CUFF.1975"; flanks "11083386^,11084359^"; structure "1-,2-"; splice_chain "11084121-,11084359-"; psi "0.345600";
chr5	juncbase	jcn_only_AD	149785822	149782188	.	-	.	gene_id "jcn_only_AD.658"; transcript_id "jcn_only_AD.658"; gene_name "CUFF.1975"; flanks "149785822-,149782188-"; structure "1^,2^"; splice_chain "149785822^,149784243^"; psi "0.752817";
chr17	juncbase	cassette	61560050	61560821	.	-	.	gene_id "cassette.473"; transcript_id "cassette.473"; gene_name "CUFF.1975"; flanks "61560050^,61560821-"; structure "0,1-2^"; splice_chain ",61560390-61560534^"; psi "0.596000";
chr16	juncbase	intron_retention	3115495	3115785	.	-	.	gene_id "intron_retention.633"; transcript_id "intron_retention.633"; gene_name "CUFF.1975"; flanks "3115495-,3115785^"; structure "0,1^2-"; splice_chain ",3115495^3115785-"; psi "0.240800";
chr10	juncbase	jcn_only_AD	35437419	35464781	.	-	.	gene_id "jcn_only_AD.659"; transcript_id "jcn_only_AD.659"; gene_name "CUFF.1975"; flanks "35437419-,35464781-"; structure "1^,2^"; splice_chain "35437419^,35464633^"; psi "0.850600";
chr7	juncbase	cassette	102696091	102669865	.	-	.	gene_id "cassette.474"; transcript_id "cassette.474"; gene_name "CUFF.1975"; flanks "102696091^,102669865-"; structure "0,1-2^"; splice_chain ",102695625-102695535^"; psi "0.498100";
chr20	juncbase	jcn_only_AD	3172411	3171465	.	-	.	gene_id "jcn_only_AD.660"; transcript_id "jcn_only_AD.660"; gene_name "CUFF.1975"; flanks "3172411-,3171465-"; structure "1^,2^"; splice_chain "3172411^,3171836^"; psi "0.544400";
chr15	juncbase	cassette	90431753	90420656	.	-	.	gene_id "cassette.475"; transcript_id "cassette.475"; gene_name "CUFF.1975"; flanks "90431753^,90420656-"; structure "0,1-2^"; splice_chain ",90421532-90421497^"; psi "0.368700";
chr15	juncbase	cassette	90431753	90414778	.	-	.	gene_id "cassette.476"; transcript_id "cassette.476"; gene_name "CUFF.1975"; flanks "90431753^,90414778-"; structure "0,1-2^"; splice_chain ",90421532-90421497^"; psi "0.368700";
chr12	juncbase	intron_retention	26221856	26224589	.	-	.	gene_id "intron_retention.634"; transcript_id "intron_retention.634"; gene_name "CUFF.1975"; flanks "26221856-,26224589^"; structure "0,1^2-"; splice_chain ",26221856^26224589-"; psi "0.873900";
chr16	juncbase	cassette	15185172	15180115	.	-	.	gene_id "cassette.477"; transcript_id "cassette.477"; gene_name "CUFF.1975"; flanks "15185172^,15180115-"; structure "0,1-2^"; splice_chain ",15180311-15180222^"; psi "0.913800";
chr22	juncbase	jcn_only_AD	25170289	25158488	.	-	.	gene_id "jcn_only_AD.661"; transcript_id "jcn_only_AD.661"; gene_name "CUFF.1975"; flanks "25170289-,25158488-"; structure "1^,2^"; splice_chain "25170289^,25165638^"; psi "0.897200";
chr11	juncbase	intron_retention	118402241	118402490	.	-	.	gene_id "intron_retention.635"; transcript_id "intron_retention.635"; gene_name "CUFF.1975"; flanks "118402241-,118402490^"; structure "0,1^2-"; splice_chain ",118402241^118402490-"; psi "0.241900";
chr19	juncbase	jcn_only_AA	21639263	21637274	.	-	.	gene_id "jcn_only_AA.543"; transcript_id "jcn_only_AA.543"; gene_name "CUFF.1975"; flanks "21639263^,21637274^"; structure "1-,2-"; splice_chain "21638406-,21637274-"; psi "0.782900";
chr19	juncbase	intron_retention	21639263	21638406	.	-	.	gene_id "intron_retention.636"; transcript_id "intron_retention.636"; gene_name "CUFF.1975"; flanks "21639263-,21638406^"; structure "0,1^2-"; splice_chain ",21639263^21638406-"; psi "0.019800";
chr12	juncbase	cassette	53861077	53862561	.	-	.	gene_id "cassette.478"; transcript_id "cassette.478"; gene_name "CUFF.1975"; flanks "53861077^,53862561-"; structure "0,1-2^"; splice_chain ",53861589-53861627^"; psi "0.821400";
chr7	juncbase	cassette	34724296	34867013	.	-	.	gene_id "cassette.479"; transcript_id "cassette.479"; gene_name "CUFF.1975"; flanks "34724296^,34867013-"; structure "0,1-2^"; splice_chain ",34851382-34851475^"; psi "0.817200";
chr7	juncbase	cassette	34818177	34867013	.	-	.	gene_id "cassette.480"; transcript_id "cassette.480"; gene_name "CUFF.1975"; flanks "34818177^,34867013-"; structure "0,1-2^"; splice_chain ",34851382-34851475^"; psi "0.817200";
chr12	juncbase	jcn_only_AD	56709691	56709026	.	-	.	gene_id "jcn_only_AD.662"; transcript_id "jcn_only_AD.662"; gene_name "CUFF.1975"; flanks "56709691-,56709026-"; structure "1^,2^"; splice_chain "56709691^,56709605^"; psi "0.164762";
chrX	juncbase	jcn_only_AD	45129986	45184738	.	-	.	gene_id "jcn_only_AD.663"; transcript_id "jcn_only_AD.663"; gene_name "CUFF.1975"; flanks "45129986-,45184738-"; structure "1^,2^"; splice_chain "45129986^,45184463^"; psi "0.155700";
chr17	juncbase	intron_retention	66508689	66511535	.	-	.	gene_id "intron_retention.637"; transcript_id "intron_retention.637"; gene_name "CUFF.1975"; flanks "66508689-,66511535^"; structure "0,1^2-"; splice_chain ",66508689^66511535-"; psi "0.312800";
chr12	juncbase	cassette	53468879	53467255	.	-	.	gene_id "cassette.481"; transcript_id "cassette.481"; gene_name "CUFF.1975"; flanks "53468879^,53467255-"; structure "0,1-2^"; splice_chain ",53468568-53468433^"; psi "0.855100";
chr11	juncbase	intron_retention	10826460	10825965	.	-	.	gene_id "intron_retention.638"; transcript_id "intron_retention.638"; gene_name "CUFF.1975"; flanks "10826460-,10825965^"; structure "0,1^2-"; splice_chain ",10826460^10825965-"; psi "0.268600";
chr3	juncbase	cassette	33617661	33614846	.	-	.	gene_id "cassette.482"; transcript_id "cassette.482"; gene_name "CUFF.1975"; flanks "33617661^,33614846-"; structure "0,1-2^"; splice_chain ",33615988-33615965^"; psi "0.737700";
chr14	juncbase	jcn_only_AD	75179636	75165559	.	-	.	gene_id "jcn_only_AD.664"; transcript_id "jcn_only_AD.664"; gene_name "CUFF.1975"; flanks "75179636-,75165559-"; structure "1^,2^"; splice_chain "75179636^,75168372^"; psi "0.346200";
chr19	juncbase	intron_retention	11474495	11474837	.	-	.	gene_id "intron_retention.639"; transcript_id "intron_retention.639"; gene_name "CUFF.1975"; flanks "11474495-,11474837^"; structure "0,1^2-"; splice_chain ",11474495^11474837-"; psi "0.990900";
chr19	juncbase	intron_retention	17449550	17449763	.	-	.	gene_id "intron_retention.640"; transcript_id "intron_retention.640"; gene_name "CUFF.1975"; flanks "17449550-,17449763^"; structure "0,1^2-"; splice_chain ",17449550^17449763-"; psi "0.081600";
chr17	juncbase	intron_retention	1616997	1615693	.	-	.	gene_id "intron_retention.641"; transcript_id "intron_retention.641"; gene_name "CUFF.1975"; flanks "1616997-,1615693^"; structure "0,1^2-"; splice_chain ",1616997^1615693-"; psi "0.782800";
chr20	juncbase	intron_retention	30136596	30136832	.	-	.	gene_id "intron_retention.642"; transcript_id "intron_retention.642"; gene_name "CUFF.1975"; flanks "30136596-,30136832^"; structure "0,1^2-"; splice_chain ",30136596^30136832-"; psi "0.874800";
chr5	juncbase	jcn_only_AD	64907584	64906870	.	-	.	gene_id "jcn_only_AD.665"; transcript_id "jcn_only_AD.665"; gene_name "CUFF.1975"; flanks "64907584-,64906870-"; structure "1^,2^"; splice_chain "64907584^,64907430^"; psi "0.676900";
chr6	juncbase	jcn_only_AA	114289798	114281182	.	-	.	gene_id "jcn_only_AA.544"; transcript_id "jcn_only_AA.544"; gene_name "CUFF.1975"; flanks "114289798^,114281182^"; structure "1-,2-"; splice_chain "114283558-,114281182-"; psi "0.675800";
chr21	juncbase	jcn_only_AD	47556899	47556408	.	-	.	gene_id "jcn_only_AD.666"; transcript_id "jcn_only_AD.666"; gene_name "CUFF.1975"; flanks "47556899-,47556408-"; structure "1^,2^"; splice_chain "47556899^,47556893^"; psi "0.779205";
chr17	juncbase	intron_retention	66511260	66511535	.	-	.	gene_id "intron_retention.643"; transcript_id "intron_retention.643"; gene_name "CUFF.1975"; flanks "66511260-,66511535^"; structure "0,1^2-"; splice_chain ",66511260^66511535-"; psi "0.460700";
chr1	juncbase	jcn_only_AA	156452229	156450569	.	-	.	gene_id "jcn_only_AA.545"; transcript_id "jcn_only_AA.545"; gene_name "CUFF.1975"; flanks "156452229^,156450569^"; structure "1-,2-"; splice_chain "156450763-,156450569-"; psi "0.113600";
chr1	juncbase	cassette	41483307	41481900	.	-	.	gene_id "cassette.483"; transcript_id "cassette.483"; gene_name "CUFF.1975"; flanks "41483307^,41481900-"; structure "0,1-2^"; splice_chain ",41483049-41482906^"; psi "0.810800";
chrX	juncbase	intron_retention	19932469	19932386	.	-	.	gene_id "intron_retention.644"; transcript_id "intron_retention.644"; gene_name "CUFF.1975"; flanks "19932469-,19932386^"; structure "0,1^2-"; splice_chain ",19932469^19932386-"; psi "0.354700";
chr22	juncbase	cassette	45182486	45204187	.	-	.	gene_id "cassette.484"; transcript_id "cassette.484"; gene_name "CUFF.1975"; flanks "45182486^,45204187-"; structure "0,1-2^"; splice_chain ",45197957-45198044^"; psi "0.986100";
chr1	juncbase	cassette	114429871	114424619	.	-	.	gene_id "cassette.485"; transcript_id "cassette.485"; gene_name "CUFF.1975"; flanks "114429871^,114424619-"; structure "0,1-2^"; splice_chain ",114429280-114429159^"; psi "0.453400";
chr1	juncbase	cassette	114429871	114423762	.	-	.	gene_id "cassette.486"; transcript_id "cassette.486"; gene_name "CUFF.1975"; flanks "114429871^,114423762-"; structure "0,1-2^"; splice_chain ",114429280-114429159^"; psi "0.453400";
chr7	juncbase	cassette	38902145	38860865	.	-	.	gene_id "cassette.487"; transcript_id "cassette.487"; gene_name "CUFF.1975"; flanks "38902145^,38860865-"; structure "0,1-2^"; splice_chain ",38869928-38869854^"; psi "0.935500";
chr17	juncbase	jcn_only_AD	29706375	29708891	.	-	.	gene_id "jcn_only_AD.667"; transcript_id "jcn_only_AD.667"; gene_name "CUFF.1975"; flanks "29706375-,29708891-"; structure "1^,2^"; splice_chain "29706375^,29707245^"; psi "0.333333";
chr17	juncbase	jcn_only_AD	29706041	29708891	.	-	.	gene_id "jcn_only_AD.668"; transcript_id "jcn_only_AD.668"; gene_name "CUFF.1975"; flanks "29706041-,29708891-"; structure "1^,2^"; splice_chain "29706041^,29707245^"; psi "0.352105";
chr2	juncbase	intron_retention	88874879	88874595	.	-	.	gene_id "intron_retention.645"; transcript_id "intron_retention.645"; gene_name "CUFF.1975"; flanks "88874879-,88874595^"; structure "0,1^2-"; splice_chain ",88874879^88874595-"; psi "0.750000";
chr4	juncbase	cassette	186267804	186274639	.	-	.	gene_id "cassette.488"; transcript_id "cassette.488"; gene_name "CUFF.1975"; flanks "186267804^,186274639-"; structure "0,1-2^"; splice_chain ",186272599-186272763^"; psi "0.432400";
chr14	juncbase	jcn_only_AA	92958584	92959820	.	-	.	gene_id "jcn_only_AA.546"; transcript_id "jcn_only_AA.546"; gene_name "CUFF.1975"; flanks "92958584^,92959820^"; structure "1-,2-"; splice_chain "92959171-,92959820-"; psi "0.922800";
chr12	juncbase	cassette	22622643	22610095	.	-	.	gene_id "cassette.489"; transcript_id "cassette.489"; gene_name "CUFF.1975"; flanks "22622643^,22610095-"; structure "0,1-2^"; splice_chain ",22612476-22612426^"; psi "0.698500";
chr15	juncbase	jcn_only_AD	90395593	90380954	.	-	.	gene_id "jcn_only_AD.669"; transcript_id "jcn_only_AD.669"; gene_name "CUFF.1975"; flanks "90395593-,90380954-"; structure "1^,2^"; splice_chain "90395593^,90391825^"; psi "0.488889";
chr15	juncbase	jcn_only_AD	90414707	90380954	.	-	.	gene_id "jcn_only_AD.670"; transcript_id "jcn_only_AD.670"; gene_name "CUFF.1975"; flanks "90414707-,90380954-"; structure "1^,2^"; splice_chain "90414707^,90391825^"; psi "0.962422";
chr12	juncbase	intron_retention	53849154	53849245	.	-	.	gene_id "intron_retention.646"; transcript_id "intron_retention.646"; gene_name "CUFF.1975"; flanks "53849154-,53849245^"; structure "0,1^2-"; splice_chain ",53849154^53849245-"; psi "0.305400";
chr8	juncbase	intron_retention	56675194	56668970	.	-	.	gene_id "intron_retention.647"; transcript_id "intron_retention.647"; gene_name "CUFF.1975"; flanks "56675194-,56668970^"; structure "0,1^2-"; splice_chain ",56675194^56668970-"; psi "0.242600";
chr2	juncbase	intron_retention	242591389	242592927	.	-	.	gene_id "intron_retention.648"; transcript_id "intron_retention.648"; gene_name "CUFF.1975"; flanks "242591389-,242592927^"; structure "0,1^2-"; splice_chain ",242591389^242592927-"; psi "0.044200";
chr17	juncbase	jcn_only_AA	6352727	6353682	.	-	.	gene_id "jcn_only_AA.547"; transcript_id "jcn_only_AA.547"; gene_name "CUFF.1975"; flanks "6352727^,6353682^"; structure "1-,2-"; splice_chain "6353348-,6353682-"; psi "0.193000";
chr6	juncbase	cassette	90312846	90321991	.	-	.	gene_id "cassette.490"; transcript_id "cassette.490"; gene_name "CUFF.1975"; flanks "90312846^,90321991-"; structure "0,1-2^"; splice_chain ",90315726-90315824^"; psi "0.867500";
chr7	juncbase	jcn_only_AA	107253877	107262075	.	-	.	gene_id "jcn_only_AA.548"; transcript_id "jcn_only_AA.548"; gene_name "CUFF.1975"; flanks "107253877^,107262075^"; structure "1-,2-"; splice_chain "107258773-,107262075-"; psi "0.603100";
chr21	juncbase	cassette	47562023	47558560	.	-	.	gene_id "cassette.491"; transcript_id "cassette.491"; gene_name "CUFF.1975"; flanks "47562023^,47558560-"; structure "0,1-2^"; splice_chain ",47558837-47558794^"; psi "0.723400";
chr21	juncbase	cassette	47565331	47558560	.	-	.	gene_id "cassette.492"; transcript_id "cassette.492"; gene_name "CUFF.1975"; flanks "47565331^,47558560-"; structure "0,1-2^"; splice_chain ",47558837-47558794^"; psi "0.723400";
chr12	juncbase	intron_retention	53468879	53468568	.	-	.	gene_id "intron_retention.649"; transcript_id "intron_retention.649"; gene_name "CUFF.1975"; flanks "53468879-,53468568^"; structure "0,1^2-"; splice_chain ",53468879^53468568-"; psi "0.272000";
chr7	juncbase	jcn_only_AD	102665510	102608564	.	-	.	gene_id "jcn_only_AD.671"; transcript_id "jcn_only_AD.671"; gene_name "CUFF.1975"; flanks "102665510-,102608564-"; structure "1^,2^"; splice_chain "102665510^,102613597^"; psi "0.909700";
chr1	juncbase	jcn_only_AD	28655635	28657108	.	-	.	gene_id "jcn_only_AD.672"; transcript_id "jcn_only_AD.672"; gene_name "CUFF.1975"; flanks "28655635-,28657108-"; structure "1^,2^"; splice_chain "28655635^,28655691^"; psi "0.058800";
chr6	juncbase	cassette	320364	345854	.	-	.	gene_id "cassette.493"; transcript_id "cassette.493"; gene_name "CUFF.1975"; flanks "320364^,345854-"; structure "0,1-2^"; splice_chain ",335114-335163^"; psi "0.789400";
chr6	juncbase	cassette	311962	345854	.	-	.	gene_id "cassette.494"; transcript_id "cassette.494"; gene_name "CUFF.1975"; flanks "311962^,345854-"; structure "0,1-2^"; splice_chain ",335114-335163^"; psi "0.789400";
chrX	juncbase	jcn_only_AA	85302488	85219057	.	-	.	gene_id "jcn_only_AA.549"; transcript_id "jcn_only_AA.549"; gene_name "CUFF.1975"; flanks "85302488^,85219057^"; structure "1-,2-"; splice_chain "85282561-,85219057-"; psi "0.750000";
chr14	juncbase	jcn_only_AA	104204031	104201416	.	-	.	gene_id "jcn_only_AA.550"; transcript_id "jcn_only_AA.550"; gene_name "CUFF.1975"; flanks "104204031^,104201416^"; structure "1-,2-"; splice_chain "104202539-,104201416-"; psi "0.041900";
chr4	juncbase	jcn_only_AA	120384134	120414488	.	-	.	gene_id "jcn_only_AA.551"; transcript_id "jcn_only_AA.551"; gene_name "CUFF.1975"; flanks "120384134^,120414488^"; structure "1-,2-"; splice_chain "120409800-,120414488-"; psi "0.899100";
chr15	juncbase	jcn_only_AD	90414707	90380954	.	-	.	gene_id "jcn_only_AD.673"; transcript_id "jcn_only_AD.673"; gene_name "CUFF.1975"; flanks "90414707-,90380954-"; structure "1^,2^"; splice_chain "90414707^,90395593^"; psi "0.963997";
chr14	juncbase	jcn_only_AA	76286504	76330010	.	-	.	gene_id "jcn_only_AA.552"; transcript_id "jcn_only_AA.552"; gene_name "CUFF.1975"; flanks "76286504^,76330010^"; structure "1-,2-"; splice_chain "76286946-,76330010-"; psi "0.254500";
chr11	juncbase	intron_retention	406843	406538	.	-	.	gene_id "intron_retention.650"; transcript_id "intron_retention.650"; gene_name "CUFF.1975"; flanks "406843-,406538^"; structure "0,1^2-"; splice_chain ",406843^406538-"; psi "0.564200";
chr6	juncbase	intron_retention	348274	348769	.	-	.	gene_id "intron_retention.651"; transcript_id "intron_retention.651"; gene_name "CUFF.1975"; flanks "348274-,348769^"; structure "0,1^2-"; splice_chain ",348274^348769-"; psi "0.214500";
chr5	juncbase	jcn_only_AD	128862149	128863441	.	-	.	gene_id "jcn_only_AD.674"; transcript_id "jcn_only_AD.674"; gene_name "CUFF.1975"; flanks "128862149-,128863441-"; structure "1^,2^"; splice_chain "128862149^,128862208^"; psi "0.052600";
chr9	juncbase	cassette	34989828	34993197	.	-	.	gene_id "cassette.495"; transcript_id "cassette.495"; gene_name "CUFF.1975"; flanks "34989828^,34993197-"; structure "0,1-2^"; splice_chain ",34990496-34990608^"; psi "0.442100";
chr9	juncbase	intron_retention	15186942	15185404	.	-	.	gene_id "intron_retention.652"; transcript_id "intron_retention.652"; gene_name "CUFF.1975"; flanks "15186942-,15185404^"; structure "0,1^2-"; splice_chain ",15186942^15185404-"; psi "0.322300";
chr16	juncbase	intron_retention	4411986	4411804	.	-	.	gene_id "intron_retention.653"; transcript_id "intron_retention.653"; gene_name "CUFF.1975"; flanks "4411986-,4411804^"; structure "0,1^2-"; splice_chain ",4411986^4411804-"; psi "0.597100";
chr4	juncbase	intron_retention	77987402	77977253	.	-	.	gene_id "intron_retention.654"; transcript_id "intron_retention.654"; gene_name "CUFF.1975"; flanks "77987402-,77977253^"; structure "0,1^2-"; splice_chain ",77987402^77977253-"; psi "0.172400";
chr16	juncbase	intron_retention	70253815	70253698	.	-	.	gene_id "intron_retention.655"; transcript_id "intron_retention.655"; gene_name "CUFF.1975"; flanks "70253815-,70253698^"; structure "0,1^2-"; splice_chain ",70253815^70253698-"; psi "0.391300";
chr19	juncbase	jcn_only_AD	51538062	51537896	.	-	.	gene_id "jcn_only_AD.675"; transcript_id "jcn_only_AD.675"; gene_name "CUFF.1975"; flanks "51538062-,51537896-"; structure "1^,2^"; splice_chain "51538062^,51538051^"; psi "0.943300";
chr18	juncbase	jcn_only_AA	67562937	67509631	.	-	.	gene_id "jcn_only_AA.553"; transcript_id "jcn_only_AA.553"; gene_name "CUFF.1975"; flanks "67562937^,67509631^"; structure "1-,2-"; splice_chain "67540482-,67509631-"; psi "0.282700";
chr16	juncbase	intron_retention	23478753	23478099	.	-	.	gene_id "intron_retention.656"; transcript_id "intron_retention.656"; gene_name "CUFF.1975"; flanks "23478753-,23478099^"; structure "0,1^2-"; splice_chain ",23478753^23478099-"; psi "0.730400";
chr7	juncbase	jcn_only_AD	22396449	22357656	.	-	.	gene_id "jcn_only_AD.676"; transcript_id "jcn_only_AD.676"; gene_name "CUFF.1975"; flanks "22396449-,22357656-"; structure "1^,2^"; splice_chain "22396449^,22395597^"; psi "0.500000";
chr14	juncbase	jcn_only_AA	76249873	76259259	.	-	.	gene_id "jcn_only_AA.554"; transcript_id "jcn_only_AA.554"; gene_name "CUFF.1975"; flanks "76249873^,76259259^"; structure "1-,2-"; splice_chain "76259256-,76259259-"; psi "0.875000";
chr2	juncbase	cassette	23604092	23599797	.	-	.	gene_id "cassette.496"; transcript_id "cassette.496"; gene_name "CUFF.1975"; flanks "23604092^,23599797-"; structure "0,1-2^"; splice_chain ",23603112-23602995^"; psi "0.682000";
chr2	juncbase	cassette	228172635	228173920	.	-	.	gene_id "cassette.497"; transcript_id "cassette.497"; gene_name "CUFF.1975"; flanks "228172635^,228173920-"; structure "0,1-2^"; splice_chain ",228173615-228173792^"; psi "0.272700";
chr2	juncbase	cassette	242447858	242441123	.	-	.	gene_id "cassette.498"; transcript_id "cassette.498"; gene_name "CUFF.1975"; flanks "242447858^,242441123-"; structure "0,1-2^"; splice_chain ",242447550-242447421^"; psi "0.502300";
chr2	juncbase	cassette	242447920	242441123	.	-	.	gene_id "cassette.499"; transcript_id "cassette.499"; gene_name "CUFF.1975"; flanks "242447920^,242441123-"; structure "0,1-2^"; splice_chain ",242447550-242447421^"; psi "0.502300";
chr2	juncbase	cassette	101565942	101580520	.	-	.	gene_id "cassette.500"; transcript_id "cassette.500"; gene_name "CUFF.1975"; flanks "101565942^,101580520-"; structure "0,1-2^"; splice_chain ",101579217-101579295^"; psi "0.960400";
chr19	juncbase	jcn_only_AD	41946386	41944319	.	-	.	gene_id "jcn_only_AD.677"; transcript_id "jcn_only_AD.677"; gene_name "CUFF.1975"; flanks "41946386-,41944319-"; structure "1^,2^"; splice_chain "41946386^,41945787^"; psi "0.024155";
chr9	juncbase	jcn_only_AA	130988452	130996300	.	-	.	gene_id "jcn_only_AA.555"; transcript_id "jcn_only_AA.555"; gene_name "CUFF.1975"; flanks "130988452^,130996300^"; structure "1-,2-"; splice_chain "130994265-,130996300-"; psi "0.796600";
chr7	juncbase	cassette	150815719	150819812	.	-	.	gene_id "cassette.501"; transcript_id "cassette.501"; gene_name "CUFF.1975"; flanks "150815719^,150819812-"; structure "0,1-2^"; splice_chain ",150817074-150817232^"; psi "0.950800";
chr2	juncbase	jcn_only_AD	16573594	16613773	.	-	.	gene_id "jcn_only_AD.678"; transcript_id "jcn_only_AD.678"; gene_name "CUFF.1975"; flanks "16573594-,16613773-"; structure "1^,2^"; splice_chain "16573594^,16613075^"; psi "0.857600";
chr14	juncbase	intron_retention	24470142	24470242	.	-	.	gene_id "intron_retention.657"; transcript_id "intron_retention.657"; gene_name "CUFF.1975"; flanks "24470142-,24470242^"; structure "0,1^2-"; splice_chain ",24470142^24470242-"; psi "0.129400";
chr12	juncbase	cassette	52994811	52992896	.	-	.	gene_id "cassette.502"; transcript_id "cassette.502"; gene_name "CUFF.1975"; flanks "52994811^,52992896-"; structure "0,1-2^"; splice_chain ",52993086-52993055^"; psi "0.252000";
chr11	juncbase	intron_retention	2189096	2188715	.	-	.	gene_id "intron_retention.658"; transcript_id "intron_retention.658"; gene_name "CUFF.1975"; flanks "2189096-,2188715^"; structure "0,1^2-"; splice_chain ",2189096^2188715-"; psi "0.147900";
chr17	juncbase	jcn_only_AA	80416384	80417868	.	-	.	gene_id "jcn_only_AA.556"; transcript_id "jcn_only_AA.556"; gene_name "CUFF.1975"; flanks "80416384^,80417868^"; structure "1-,2-"; splice_chain "80417151-,80417868-"; psi "0.781800";
chr4	juncbase	jcn_only_AA	2934327	2934136	.	-	.	gene_id "jcn_only_AA.557"; transcript_id "jcn_only_AA.557"; gene_name "CUFF.1975"; flanks "2934327^,2934136^"; structure "1-,2-"; splice_chain "2934239-,2934136-"; psi "0.034400";
chr2	juncbase	jcn_only_AD	27712482	27708370	.	-	.	gene_id "jcn_only_AD.679"; transcript_id "jcn_only_AD.679"; gene_name "CUFF.1975"; flanks "27712482-,27708370-"; structure "1^,2^"; splice_chain "27712482^,27709026^"; psi "0.980700";
chr2	juncbase	intron_retention	262631	253115	.	-	.	gene_id "intron_retention.659"; transcript_id "intron_retention.659"; gene_name "CUFF.1975"; flanks "262631-,253115^"; structure "0,1^2-"; splice_chain ",262631^253115-"; psi "0.105500";
chr5	juncbase	cassette	36166764	36170446	.	-	.	gene_id "cassette.503"; transcript_id "cassette.503"; gene_name "CUFF.1975"; flanks "36166764^,36170446-"; structure "0,1-2^"; splice_chain ",36168415-36168549^"; psi "0.833600";
chr4	juncbase	intron_retention	83816845	83816000	.	-	.	gene_id "intron_retention.660"; transcript_id "intron_retention.660"; gene_name "CUFF.1975"; flanks "83816845-,83816000^"; structure "0,1^2-"; splice_chain ",83816845^83816000-"; psi "0.425000";
chr19	juncbase	jcn_only_AA	34003499	33984243	.	-	.	gene_id "jcn_only_AA.558"; transcript_id "jcn_only_AA.558"; gene_name "CUFF.1975"; flanks "34003499^,33984243^"; structure "1-,2-"; splice_chain "34002061-,33984243-"; psi "0.182800";
chr11	juncbase	jcn_only_AD	119058367	119058649	.	-	.	gene_id "jcn_only_AD.680"; transcript_id "jcn_only_AD.680"; gene_name "CUFF.1975"; flanks "119058367-,119058649-"; structure "1^,2^"; splice_chain "119058367^,119058409^"; psi "0.120100";
chr15	juncbase	intron_retention	40531336	40532800	.	-	.	gene_id "intron_retention.661"; transcript_id "intron_retention.661"; gene_name "CUFF.1975"; flanks "40531336-,40532800^"; structure "0,1^2-"; splice_chain ",40531336^40532800-"; psi "0.124400";
chr12	juncbase	intron_retention	56572594	56572318	.	-	.	gene_id "intron_retention.662"; transcript_id "intron_retention.662"; gene_name "CUFF.1975"; flanks "56572594-,56572318^"; structure "0,1^2-"; splice_chain ",56572594^56572318-"; psi "0.633600";
chr4	juncbase	cassette	56473604	56471516	.	-	.	gene_id "cassette.504"; transcript_id "cassette.504"; gene_name "CUFF.1975"; flanks "56473604^,56471516-"; structure "0,1-2^"; splice_chain ",56473515-56473465^"; psi "0.361100";
chr4	juncbase	cassette	56473604	56466742	.	-	.	gene_id "cassette.505"; transcript_id "cassette.505"; gene_name "CUFF.1975"; flanks "56473604^,56466742-"; structure "0,1-2^"; splice_chain ",56473515-56473465^"; psi "0.361100";
chr8	juncbase	jcn_only_AA	71543525	71558280	.	-	.	gene_id "jcn_only_AA.559"; transcript_id "jcn_only_AA.559"; gene_name "CUFF.1975"; flanks "71543525^,71558280^"; structure "1-,2-"; splice_chain "71544670-,71558280-"; psi "0.111600";
chr10	juncbase	jcn_only_AA	73972945	73956747	.	-	.	gene_id "jcn_only_AA.560"; transcript_id "jcn_only_AA.560"; gene_name "CUFF.1975"; flanks "73972945^,73956747^"; structure "1-,2-"; splice_chain "73970589-,73956747-"; psi "0.056048";
chr17	juncbase	intron_retention	66508689	66509051	.	-	.	gene_id "intron_retention.663"; transcript_id "intron_retention.663"; gene_name "CUFF.1975"; flanks "66508689-,66509051^"; structure "0,1^2-"; splice_chain ",66508689^66509051-"; psi "0.418600";
chr2	juncbase	jcn_only_AD	234160	231191	.	-	.	gene_id "jcn_only_AD.681"; transcript_id "jcn_only_AD.681"; gene_name "CUFF.1975"; flanks "234160-,231191-"; structure "1^,2^"; splice_chain "234160^,233101^"; psi "0.622700";
chr17	juncbase	jcn_only_AA	79995507	79994889	.	-	.	gene_id "jcn_only_AA.561"; transcript_id "jcn_only_AA.561"; gene_name "CUFF.1975"; flanks "79995507^,79994889^"; structure "1-,2-"; splice_chain "79995417-,79994889-"; psi "0.330185";
chr2	juncbase	intron_retention	264084	253115	.	-	.	gene_id "intron_retention.664"; transcript_id "intron_retention.664"; gene_name "CUFF.1975"; flanks "264084-,253115^"; structure "0,1^2-"; splice_chain ",264084^253115-"; psi "0.106100";
chr9	juncbase	jcn_only_AD	123555638	123555535	.	-	.	gene_id "jcn_only_AD.682"; transcript_id "jcn_only_AD.682"; gene_name "CUFF.1975"; flanks "123555638-,123555535-"; structure "1^,2^"; splice_chain "123555638^,123555632^"; psi "0.480300";
chr19	juncbase	jcn_only_AD	33892627	33882385	.	-	.	gene_id "jcn_only_AD.683"; transcript_id "jcn_only_AD.683"; gene_name "CUFF.1975"; flanks "33892627-,33882385-"; structure "1^,2^"; splice_chain "33892627^,33886016^"; psi "0.918171";
chr19	juncbase	jcn_only_AD	33886996	33882385	.	-	.	gene_id "jcn_only_AD.684"; transcript_id "jcn_only_AD.684"; gene_name "CUFF.1975"; flanks "33886996-,33882385-"; structure "1^,2^"; splice_chain "33886996^,33886016^"; psi "0.405675";
chr17	juncbase	intron_retention	1616997	1616219	.	-	.	gene_id "intron_retention.665"; transcript_id "intron_retention.665"; gene_name "CUFF.1975"; flanks "1616997-,1616219^"; structure "0,1^2-"; splice_chain ",1616997^1616219-"; psi "0.966400";
chr2	juncbase	jcn_only_AA	220095127	220096982	.	-	.	gene_id "jcn_only_AA.562"; transcript_id "jcn_only_AA.562"; gene_name "CUFF.1975"; flanks "220095127^,220096982^"; structure "1-,2-"; splice_chain "220096650-,220096982-"; psi "0.316000";
chr1	juncbase	jcn_only_AA	1991030	2066701	.	-	.	gene_id "jcn_only_AA.563"; transcript_id "jcn_only_AA.563"; gene_name "CUFF.1975"; flanks "1991030^,2066701^"; structure "1-,2-"; splice_chain "2002738-,2066701-"; psi "0.379700";
chr14	juncbase	cassette	24459568	24473546	.	-	.	gene_id "cassette.506"; transcript_id "cassette.506"; gene_name "CUFF.1975"; flanks "24459568^,24473546-"; structure "0,1-2^"; splice_chain ",24464241-24464342^"; psi "0.780500";
chr14	juncbase	cassette	24459568	24470072	.	-	.	gene_id "cassette.507"; transcript_id "cassette.507"; gene_name "CUFF.1975"; flanks "24459568^,24470072-"; structure "0,1-2^"; splice_chain ",24464241-24464342^"; psi "0.780500";
chr16	juncbase	cassette	19584563	19590374	.	-	.	gene_id "cassette.508"; transcript_id "cassette.508"; gene_name "CUFF.1975"; flanks "19584563^,19590374-"; structure "0,1-2^"; splice_chain ",19586420-19586444^"; psi "0.796800";
chr10	juncbase	cassette	123670421	123659509	.	-	.	gene_id "cassette.509"; transcript_id "cassette.509"; gene_name "CUFF.1975"; flanks "123670421^,123659509-"; structure "0,1-2^"; splice_chain ",123662135-123661906^"; psi "0.764700";
chr2	juncbase	intron_retention	242440893	242440334	.	-	.	gene_id "intron_retention.666"; transcript_id "intron_retention.666"; gene_name "CUFF.1975"; flanks "242440893-,242440334^"; structure "0,1^2-"; splice_chain ",242440893^242440334-"; psi "0.843100";
chr11	juncbase	intron_retention	75524648	75522614	.	-	.	gene_id "intron_retention.667"; transcript_id "intron_retention.667"; gene_name "CUFF.1975"; flanks "75524648-,75522614^"; structure "0,1^2-"; splice_chain ",75524648^75522614-"; psi "0.771300";
chr11	juncbase	jcn_only_AA	119290761	119290141	.	-	.	gene_id "jcn_only_AA.564"; transcript_id "jcn_only_AA.564"; gene_name "CUFF.1975"; flanks "119290761^,119290141^"; structure "1-,2-"; splice_chain "119290230-,119290141-"; psi "0.844300";
chr22	juncbase	intron_retention	29694885	29695224	.	-	.	gene_id "intron_retention.668"; transcript_id "intron_retention.668"; gene_name "CUFF.1975"; flanks "29694885-,29695224^"; structure "0,1^2-"; splice_chain ",29694885^29695224-"; psi "0.222200";
chr10	juncbase	jcn_only_AA	127548172	127541211	.	-	.	gene_id "jcn_only_AA.565"; transcript_id "jcn_only_AA.565"; gene_name "CUFF.1975"; flanks "127548172^,127541211^"; structure "1-,2-"; splice_chain "127542772-,127541211-"; psi "0.568200";
chr16	juncbase	cassette	75589702	75576581	.	-	.	gene_id "cassette.510"; transcript_id "cassette.510"; gene_name "CUFF.1975"; flanks "75589702^,75576581-"; structure "0,1-2^"; splice_chain ",75579852-75579724^"; psi "0.436800";
chr12	juncbase	intron_retention	72094805	72097757	.	-	.	gene_id "intron_retention.669"; transcript_id "intron_retention.669"; gene_name "CUFF.1975"; flanks "72094805-,72097757^"; structure "0,1^2-"; splice_chain ",72094805^72097757-"; psi "0.027100";
chr1	juncbase	jcn_only_AD	153389039	153390542	.	-	.	gene_id "jcn_only_AD.685"; transcript_id "jcn_only_AD.685"; gene_name "CUFF.1975"; flanks "153389039-,153390542-"; structure "1^,2^"; splice_chain "153389039^,153389754^"; psi "0.250000";
chr1	juncbase	cassette	11074022	11076901	.	-	.	gene_id "cassette.511"; transcript_id "cassette.511"; gene_name "CUFF.1975"; flanks "11074022^,11076901-"; structure "0,1-2^"; splice_chain ",11076180-11076311^"; psi "0.078600";
chr11	juncbase	cassette	118927786	118926555	.	-	.	gene_id "cassette.512"; transcript_id "cassette.512"; gene_name "CUFF.1975"; flanks "118927786^,118926555-"; structure "0,1-2^"; splice_chain ",118926879-118926782^"; psi "0.974300";
chr9	juncbase	jcn_only_AA	43885072	43890296	.	-	.	gene_id "jcn_only_AA.566"; transcript_id "jcn_only_AA.566"; gene_name "CUFF.1975"; flanks "43885072^,43890296^"; structure "1-,2-"; splice_chain "43887611-,43890296-"; psi "0.289200";
chr6	juncbase	jcn_only_AD	112558117	112600323	.	-	.	gene_id "jcn_only_AD.686"; transcript_id "jcn_only_AD.686"; gene_name "CUFF.1975"; flanks "112558117-,112600323-"; structure "1^,2^"; splice_chain "112558117^,112598513^"; psi "0.758600";
chr3	juncbase	cassette	165547305	165504099	.	-	.	gene_id "cassette.513"; transcript_id "cassette.513"; gene_name "CUFF.1975"; flanks "165547305^,165504099-"; structure "0,1-2^"; splice_chain ",165545857-165545774^"; psi "0.310700";
chr17	juncbase	intron_retention	61904566	61904778	.	-	.	gene_id "intron_retention.670"; transcript_id "intron_retention.670"; gene_name "CUFF.1975"; flanks "61904566-,61904778^"; structure "0,1^2-"; splice_chain ",61904566^61904778-"; psi "0.696500";
chr14	juncbase	jcn_only_AA	104205016	104202539	.	-	.	gene_id "jcn_only_AA.567"; transcript_id "jcn_only_AA.567"; gene_name "CUFF.1975"; flanks "104205016^,104202539^"; structure "1-,2-"; splice_chain "104204197-,104202539-"; psi "0.115800";
chr14	juncbase	jcn_only_AD	61448100	61449226	.	-	.	gene_id "jcn_only_AD.687"; transcript_id "jcn_only_AD.687"; gene_name "CUFF.1975"; flanks "61448100-,61449226-"; structure "1^,2^"; splice_chain "61448100^,61448405^"; psi "0.872396";
chr7	juncbase	cassette	37136224	37053040	.	-	.	gene_id "cassette.514"; transcript_id "cassette.514"; gene_name "CUFF.1975"; flanks "37136224^,37053040-"; structure "0,1-2^"; splice_chain ",37073017-37072952^"; psi "0.458200";
chr11	juncbase	jcn_only_AA	119056219	119056634	.	-	.	gene_id "jcn_only_AA.568"; transcript_id "jcn_only_AA.568"; gene_name "CUFF.1975"; flanks "119056219^,119056634^"; structure "1-,2-"; splice_chain "119056558-,119056634-"; psi "0.871323";
chr11	juncbase	jcn_only_AA	119056219	119056631	.	-	.	gene_id "jcn_only_AA.569"; transcript_id "jcn_only_AA.569"; gene_name "CUFF.1975"; flanks "119056219^,119056631^"; structure "1-,2-"; splice_chain "119056558-,119056631-"; psi "0.620628";
chr11	juncbase	cassette	94707232	94730188	.	-	.	gene_id "cassette.515"; transcript_id "cassette.515"; gene_name "CUFF.1975"; flanks "94707232^,94730188-"; structure "0,1-2^"; splice_chain ",94708818-94708912^"; psi "0.938800";
chr5	juncbase	intron_retention	140027598	140028061	.	-	.	gene_id "intron_retention.671"; transcript_id "intron_retention.671"; gene_name "CUFF.1975"; flanks "140027598-,140028061^"; structure "0,1^2-"; splice_chain ",140027598^140028061-"; psi "0.945500";
chr2	juncbase	jcn_only_AD	3447662	3461392	.	-	.	gene_id "jcn_only_AD.688"; transcript_id "jcn_only_AD.688"; gene_name "CUFF.1975"; flanks "3447662-,3461392-"; structure "1^,2^"; splice_chain "3447662^,3453248^"; psi "0.965187";
chr17	juncbase	jcn_only_AA	1945169	1946270	.	-	.	gene_id "jcn_only_AA.570"; transcript_id "jcn_only_AA.570"; gene_name "CUFF.1975"; flanks "1945169^,1946270^"; structure "1-,2-"; splice_chain "1945899-,1946270-"; psi "0.221700";
chr22	juncbase	jcn_only_AD	51039579	51020786	.	-	.	gene_id "jcn_only_AD.689"; transcript_id "jcn_only_AD.689"; gene_name "CUFF.1975"; flanks "51039579-,51020786-"; structure "1^,2^"; splice_chain "51039579^,51020987^"; psi "0.339000";
chr8	juncbase	jcn_only_AA	143922641	143995379	.	-	.	gene_id "jcn_only_AA.571"; transcript_id "jcn_only_AA.571"; gene_name "CUFF.1975"; flanks "143922641^,143995379^"; structure "1-,2-"; splice_chain "143927811-,143995379-"; psi "0.879900";
chr14	juncbase	cassette	23390329	23393510	.	-	.	gene_id "cassette.516"; transcript_id "cassette.516"; gene_name "CUFF.1975"; flanks "23390329^,23393510-"; structure "0,1-2^"; splice_chain ",23392288-23392413^"; psi "0.784700";
chr6	juncbase	jcn_only_AD	33240503	33243574	.	-	.	gene_id "jcn_only_AD.690"; transcript_id "jcn_only_AD.690"; gene_name "CUFF.1975"; flanks "33240503-,33243574-"; structure "1^,2^"; splice_chain "33240503^,33243434^"; psi "0.835600";
chr7	juncbase	jcn_only_AA	111201907	111161505	.	-	.	gene_id "jcn_only_AA.572"; transcript_id "jcn_only_AA.572"; gene_name "CUFF.1975"; flanks "111201907^,111161505^"; structure "1-,2-"; splice_chain "111172641-,111161505-"; psi "0.472600";
chr13	juncbase	jcn_only_AD	97644762	97642063	.	-	.	gene_id "jcn_only_AD.691"; transcript_id "jcn_only_AD.691"; gene_name "CUFF.1975"; flanks "97644762-,97642063-"; structure "1^,2^"; splice_chain "97644762^,97644676^"; psi "0.061200";
chr1	juncbase	jcn_only_AD	166808841	166810192	.	-	.	gene_id "jcn_only_AD.692"; transcript_id "jcn_only_AD.692"; gene_name "CUFF.1975"; flanks "166808841-,166810192-"; structure "1^,2^"; splice_chain "166808841^,166809006^"; psi "0.439400";
chr16	juncbase	jcn_only_AA	67223874	67223586	.	-	.	gene_id "jcn_only_AA.573"; transcript_id "jcn_only_AA.573"; gene_name "CUFF.1975"; flanks "67223874^,67223586^"; structure "1-,2-"; splice_chain "67223670-,67223586-"; psi "0.227000";
chr2	juncbase	jcn_only_AD	110883214	110881640	.	-	.	gene_id "jcn_only_AD.693"; transcript_id "jcn_only_AD.693"; gene_name "CUFF.1975"; flanks "110883214-,110881640-"; structure "1^,2^"; splice_chain "110883214^,110882796^"; psi "0.955100";
chr17	juncbase	intron_retention	79995326	79994964	.	-	.	gene_id "intron_retention.672"; transcript_id "intron_retention.672"; gene_name "CUFF.1975"; flanks "79995326-,79994964^"; structure "0,1^2-"; splice_chain ",79995326^79994964-"; psi "0.230400";
chr17	juncbase	jcn_only_AD	61554704	61555292	.	-	.	gene_id "jcn_only_AD.694"; transcript_id "jcn_only_AD.694"; gene_name "CUFF.1975"; flanks "61554704-,61555292-"; structure "1^,2^"; splice_chain "61554704^,61555151^"; psi "0.931400";
chr1	juncbase	jcn_only_AA	33647595	33647022	.	-	.	gene_id "jcn_only_AA.574"; transcript_id "jcn_only_AA.574"; gene_name "CUFF.1975"; flanks "33647595^,33647022^"; structure "1-,2-"; splice_chain "33647095-,33647022-"; psi "0.444400";
chr1	juncbase	jcn_only_AA	32540678	32541268	.	-	.	gene_id "jcn_only_AA.575"; transcript_id "jcn_only_AA.575"; gene_name "CUFF.1975"; flanks "32540678^,32541268^"; structure "1-,2-"; splice_chain "32541204-,32541268-"; psi "0.182300";
chr3	juncbase	jcn_only_AA	28357914	28360223	.	-	.	gene_id "jcn_only_AA.576"; transcript_id "jcn_only_AA.576"; gene_name "CUFF.1975"; flanks "28357914^,28360223^"; structure "1-,2-"; splice_chain "28358244-,28360223-"; psi "0.265545";
chr3	juncbase	jcn_only_AA	28357914	28361000	.	-	.	gene_id "jcn_only_AA.577"; transcript_id "jcn_only_AA.577"; gene_name "CUFF.1975"; flanks "28357914^,28361000^"; structure "1-,2-"; splice_chain "28358244-,28361000-"; psi "0.895807";
chr5	juncbase	cassette	54468766	54442684	.	-	.	gene_id "cassette.517"; transcript_id "cassette.517"; gene_name "CUFF.1975"; flanks "54468766^,54442684-"; structure "0,1-2^"; splice_chain ",54468478-54468416^"; psi "0.492200";
chr2	juncbase	cassette	242590750	242592927	.	-	.	gene_id "cassette.518"; transcript_id "cassette.518"; gene_name "CUFF.1975"; flanks "242590750^,242592927-"; structure "0,1-2^"; splice_chain ",242592722-242592784^"; psi "0.214100";
chr2	juncbase	cassette	242591389	242592927	.	-	.	gene_id "cassette.519"; transcript_id "cassette.519"; gene_name "CUFF.1975"; flanks "242591389^,242592927-"; structure "0,1-2^"; splice_chain ",242592722-242592784^"; psi "0.214100";
chr12	juncbase	cassette	27627846	27641393	.	-	.	gene_id "cassette.520"; transcript_id "cassette.520"; gene_name "CUFF.1975"; flanks "27627846^,27641393-"; structure "0,1-2^"; splice_chain ",27628515-27628664^"; psi "0.700000";
chr2	juncbase	intron_retention	175712041	175711685	.	-	.	gene_id "intron_retention.673"; transcript_id "intron_retention.673"; gene_name "CUFF.1975"; flanks "175712041-,175711685^"; structure "0,1^2-"; splice_chain ",175712041^175711685-"; psi "0.450700";
chr12	juncbase	intron_retention	58019247	58019408	.	-	.	gene_id "intron_retention.674"; transcript_id "intron_retention.674"; gene_name "CUFF.1975"; flanks "58019247-,58019408^"; structure "0,1^2-"; splice_chain ",58019247^58019408-"; psi "0.358700";
chr17	juncbase	cassette	61555459	61557130	.	-	.	gene_id "cassette.521"; transcript_id "cassette.521"; gene_name "CUFF.1975"; flanks "61555459^,61557130-"; structure "0,1-2^"; splice_chain ",61556368-61556461^"; psi "0.924700";
chr7	juncbase	jcn_only_AD	107643294	107642178	.	-	.	gene_id "jcn_only_AD.695"; transcript_id "jcn_only_AD.695"; gene_name "CUFF.1975"; flanks "107643294-,107642178-"; structure "1^,2^"; splice_chain "107643294^,107642572^"; psi "0.590900";
chrX	juncbase	cassette	19947903	19935452	.	-	.	gene_id "cassette.522"; transcript_id "cassette.522"; gene_name "CUFF.1975"; flanks "19947903^,19935452-"; structure "0,1-2^"; splice_chain ",19941525-19941276^"; psi "0.679200";
chr2	juncbase	jcn_only_AD	153476232	153481952	.	-	.	gene_id "jcn_only_AD.696"; transcript_id "jcn_only_AD.696"; gene_name "CUFF.1975"; flanks "153476232-,153481952-"; structure "1^,2^"; splice_chain "153476232^,153479071^"; psi "0.616000";
chr18	juncbase	jcn_only_AA	66569425	66567474	.	-	.	gene_id "jcn_only_AA.578"; transcript_id "jcn_only_AA.578"; gene_name "CUFF.1975"; flanks "66569425^,66567474^"; structure "1-,2-"; splice_chain "66567508-,66567474-"; psi "0.679500";
chr15	juncbase	jcn_only_AA	94449518	94527015	.	-	.	gene_id "jcn_only_AA.579"; transcript_id "jcn_only_AA.579"; gene_name "CUFF.1975"; flanks "94449518^,94527015^"; structure "1-,2-"; splice_chain "94512823-,94527015-"; psi "0.515600";
chr16	juncbase	jcn_only_AA	57513773	57513597	.	-	.	gene_id "jcn_only_AA.580"; transcript_id "jcn_only_AA.580"; gene_name "CUFF.1975"; flanks "57513773^,57513597^"; structure "1-,2-"; splice_chain "57513600-,57513597-"; psi "0.296100";
chr17	juncbase	jcn_only_AD	56084305	56083888	.	-	.	gene_id "jcn_only_AD.697"; transcript_id "jcn_only_AD.697"; gene_name "CUFF.1975"; flanks "56084305-,56083888-"; structure "1^,2^"; splice_chain "56084305^,56084268^"; psi "0.898800";
chr10	juncbase	jcn_only_AD	124134322	124152697	.	-	.	gene_id "jcn_only_AD.698"; transcript_id "jcn_only_AD.698"; gene_name "CUFF.1975"; flanks "124134322-,124152697-"; structure "1^,2^"; splice_chain "124134322^,124134363^"; psi "0.448671";
chr10	juncbase	intron_retention	35437419	35464781	.	-	.	gene_id "intron_retention.675"; transcript_id "intron_retention.675"; gene_name "CUFF.1975"; flanks "35437419-,35464781^"; structure "0,1^2-"; splice_chain ",35437419^35464781-"; psi "0.295700";
chr18	juncbase	cassette	55862965	55912659	.	-	.	gene_id "cassette.523"; transcript_id "cassette.523"; gene_name "CUFF.1975"; flanks "55862965^,55912659-"; structure "0,1-2^"; splice_chain ",55895062-55895139^"; psi "0.273100";
chr18	juncbase	cassette	55888989	55912659	.	-	.	gene_id "cassette.524"; transcript_id "cassette.524"; gene_name "CUFF.1975"; flanks "55888989^,55912659-"; structure "0,1-2^"; splice_chain ",55895062-55895139^"; psi "0.273100";
chr18	juncbase	cassette	55833093	55912659	.	-	.	gene_id "cassette.525"; transcript_id "cassette.525"; gene_name "CUFF.1975"; flanks "55833093^,55912659-"; structure "0,1-2^"; splice_chain ",55895062-55895139^"; psi "0.273100";
chr11	juncbase	jcn_only_AA	115267609	115267987	.	-	.	gene_id "jcn_only_AA.581"; transcript_id "jcn_only_AA.581"; gene_name "CUFF.1975"; flanks "115267609^,115267987^"; structure "1-,2-"; splice_chain "115267984-,115267987-"; psi "0.295100";
chr22	juncbase	jcn_only_AD	51015785	51015463	.	-	.	gene_id "jcn_only_AD.699"; transcript_id "jcn_only_AD.699"; gene_name "CUFF.1975"; flanks "51015785-,51015463-"; structure "1^,2^"; splice_chain "51015785^,51015753^"; psi "0.081000";
chr10	juncbase	jcn_only_AA	73887840	73857208	.	-	.	gene_id "jcn_only_AA.582"; transcript_id "jcn_only_AA.582"; gene_name "CUFF.1975"; flanks "73887840^,73857208^"; structure "1-,2-"; splice_chain "73862725-,73857208-"; psi "0.528904";
chr10	juncbase	jcn_only_AA	73887840	73862170	.	-	.	gene_id "jcn_only_AA.583"; transcript_id "jcn_only_AA.583"; gene_name "CUFF.1975"; flanks "73887840^,73862170^"; structure "1-,2-"; splice_chain "73862725-,73862170-"; psi "0.297442";
chr19	juncbase	intron_retention	18119037	18119263	.	-	.	gene_id "intron_retention.676"; transcript_id "intron_retention.676"; gene_name "CUFF.1975"; flanks "18119037-,18119263^"; structure "0,1^2-"; splice_chain ",18119037^18119263-"; psi "0.925100";
chr14	juncbase	cassette	92136158	92105594	.	-	.	gene_id "cassette.526"; transcript_id "cassette.526"; gene_name "CUFF.1975"; flanks "92136158^,92105594-"; structure "0,1-2^"; splice_chain ",92126325-92126181^"; psi "0.849500";
chr2	juncbase	jcn_only_AD	101436876	101521195	.	-	.	gene_id "jcn_only_AD.700"; transcript_id "jcn_only_AD.700"; gene_name "CUFF.1975"; flanks "101436876-,101521195-"; structure "1^,2^"; splice_chain "101436876^,101437661^"; psi "0.264400";
chr11	juncbase	intron_retention	115267609	115267984	.	-	.	gene_id "intron_retention.677"; transcript_id "intron_retention.677"; gene_name "CUFF.1975"; flanks "115267609-,115267984^"; structure "0,1^2-"; splice_chain ",115267609^115267984-"; psi "0.717100";
chr17	juncbase	jcn_only_AD	29626624	29652838	.	-	.	gene_id "jcn_only_AD.701"; transcript_id "jcn_only_AD.701"; gene_name "CUFF.1975"; flanks "29626624-,29652838-"; structure "1^,2^"; splice_chain "29626624^,29645582^"; psi "0.678571";
chr17	juncbase	jcn_only_AD	29592357	29652838	.	-	.	gene_id "jcn_only_AD.702"; transcript_id "jcn_only_AD.702"; gene_name "CUFF.1975"; flanks "29592357-,29652838-"; structure "1^,2^"; splice_chain "29592357^,29645582^"; psi "0.709677";
chr6	juncbase	intron_retention	31937093	31937292	.	-	.	gene_id "intron_retention.678"; transcript_id "intron_retention.678"; gene_name "CUFF.1975"; flanks "31937093-,31937292^"; structure "0,1^2-"; splice_chain ",31937093^31937292-"; psi "0.681800";
chr21	juncbase	jcn_only_AA	47557153	47556967	.	-	.	gene_id "jcn_only_AA.584"; transcript_id "jcn_only_AA.584"; gene_name "CUFF.1975"; flanks "47557153^,47556967^"; structure "1-,2-"; splice_chain "47556987-,47556967-"; psi "0.655900";
chr19	juncbase	intron_retention	49299685	49299586	.	-	.	gene_id "intron_retention.679"; transcript_id "intron_retention.679"; gene_name "CUFF.1975"; flanks "49299685-,49299586^"; structure "0,1^2-"; splice_chain ",49299685^49299586-"; psi "0.800800";
chr19	juncbase	intron_retention	17447966	17448817	.	-	.	gene_id "intron_retention.680"; transcript_id "intron_retention.680"; gene_name "CUFF.1975"; flanks "17447966-,17448817^"; structure "0,1^2-"; splice_chain ",17447966^17448817-"; psi "0.948300";
chr14	juncbase	intron_retention	104205016	104202539	.	-	.	gene_id "intron_retention.681"; transcript_id "intron_retention.681"; gene_name "CUFF.1975"; flanks "104205016-,104202539^"; structure "0,1^2-"; splice_chain ",104205016^104202539-"; psi "0.397400";
chr19	juncbase	jcn_only_AD	2427457	2427322	.	-	.	gene_id "jcn_only_AD.703"; transcript_id "jcn_only_AD.703"; gene_name "CUFF.1975"; flanks "2427457-,2427322-"; structure "1^,2^"; splice_chain "2427457^,2427412^"; psi "0.755100";
chr12	juncbase	intron_retention	347337	347176	.	-	.	gene_id "intron_retention.682"; transcript_id "intron_retention.682"; gene_name "CUFF.1975"; flanks "347337-,347176^"; structure "0,1^2-"; splice_chain ",347337^347176-"; psi "0.536400";
chr3	juncbase	jcn_only_AD	71803795	71777774	.	-	.	gene_id "jcn_only_AD.704"; transcript_id "jcn_only_AD.704"; gene_name "CUFF.1975"; flanks "71803795-,71777774-"; structure "1^,2^"; splice_chain "71803795^,71778225^"; psi "0.033223";
chr3	juncbase	jcn_only_AD	71802614	71777774	.	-	.	gene_id "jcn_only_AD.705"; transcript_id "jcn_only_AD.705"; gene_name "CUFF.1975"; flanks "71802614-,71777774-"; structure "1^,2^"; splice_chain "71802614^,71778225^"; psi "0.018550";
chr3	juncbase	jcn_only_AD	71803366	71777774	.	-	.	gene_id "jcn_only_AD.706"; transcript_id "jcn_only_AD.706"; gene_name "CUFF.1975"; flanks "71803366-,71777774-"; structure "1^,2^"; splice_chain "71803366^,71778225^"; psi "0.020202";
chr8	juncbase	jcn_only_AA	56675194	56663716	.	-	.	gene_id "jcn_only_AA.585"; transcript_id "jcn_only_AA.585"; gene_name "CUFF.1975"; flanks "56675194^,56663716^"; structure "1-,2-"; splice_chain "56668970-,56663716-"; psi "0.179500";
chr2	juncbase	intron_retention	175869934	175869808	.	-	.	gene_id "intron_retention.683"; transcript_id "intron_retention.683"; gene_name "CUFF.1975"; flanks "175869934-,175869808^"; structure "0,1^2-"; splice_chain ",175869934^175869808-"; psi "0.426100";
chr15	juncbase	cassette	102197125	102194933	.	-	.	gene_id "cassette.527"; transcript_id "cassette.527"; gene_name "CUFF.1975"; flanks "102197125^,102194933-"; structure "0,1-2^"; splice_chain ",102196223-102196070^"; psi "0.193300";
chr19	juncbase	intron_retention	52917621	52918377	.	-	.	gene_id "intron_retention.684"; transcript_id "intron_retention.684"; gene_name "CUFF.1975"; flanks "52917621-,52918377^"; structure "0,1^2-"; splice_chain ",52917621^52918377-"; psi "0.352900";
chr14	juncbase	jcn_only_AA	55494189	55498607	.	-	.	gene_id "jcn_only_AA.586"; transcript_id "jcn_only_AA.586"; gene_name "CUFF.1975"; flanks "55494189^,55498607^"; structure "1-,2-"; splice_chain "55498581-,55498607-"; psi "0.853900";
chr14	juncbase	jcn_only_AA	77928585	77934426	.	-	.	gene_id "jcn_only_AA.587"; transcript_id "jcn_only_AA.587"; gene_name "CUFF.1975"; flanks "77928585^,77934426^"; structure "1-,2-"; splice_chain "77928985-,77934426-"; psi "0.044700";
chr2	juncbase	cassette	175742568	175689246	.	-	.	gene_id "cassette.528"; transcript_id "cassette.528"; gene_name "CUFF.1975"; flanks "175742568^,175689246-"; structure "0,1-2^"; splice_chain ",175711685-175711608^"; psi "0.817800";
chr12	juncbase	jcn_only_AD	113645243	113633694	.	-	.	gene_id "jcn_only_AD.707"; transcript_id "jcn_only_AD.707"; gene_name "CUFF.1975"; flanks "113645243-,113633694-"; structure "1^,2^"; splice_chain "113645243^,113635346^"; psi "0.676500";
chr9	juncbase	jcn_only_AD	130966465	130953141	.	-	.	gene_id "jcn_only_AD.708"; transcript_id "jcn_only_AD.708"; gene_name "CUFF.1975"; flanks "130966465-,130953141-"; structure "1^,2^"; splice_chain "130966465^,130953711^"; psi "0.014927";
chr9	juncbase	jcn_only_AD	130954011	130953141	.	-	.	gene_id "jcn_only_AD.709"; transcript_id "jcn_only_AD.709"; gene_name "CUFF.1975"; flanks "130954011-,130953141-"; structure "1^,2^"; splice_chain "130954011^,130953711^"; psi "0.075028";
chr9	juncbase	jcn_only_AD	130954134	130953141	.	-	.	gene_id "jcn_only_AD.710"; transcript_id "jcn_only_AD.710"; gene_name "CUFF.1975"; flanks "130954134-,130953141-"; structure "1^,2^"; splice_chain "130954134^,130953711^"; psi "0.002778";
chr2	juncbase	intron_retention	220095072	220096982	.	-	.	gene_id "intron_retention.685"; transcript_id "intron_retention.685"; gene_name "CUFF.1975"; flanks "220095072-,220096982^"; structure "0,1^2-"; splice_chain ",220095072^220096982-"; psi "0.494700";
chr2	juncbase	jcn_only_AD	207989068	207953305	.	-	.	gene_id "jcn_only_AD.711"; transcript_id "jcn_only_AD.711"; gene_name "CUFF.1975"; flanks "207989068-,207953305-"; structure "1^,2^"; splice_chain "207989068^,207988498^"; psi "0.782461";
chr2	juncbase	jcn_only_AD	207988700	207953305	.	-	.	gene_id "jcn_only_AD.712"; transcript_id "jcn_only_AD.712"; gene_name "CUFF.1975"; flanks "207988700-,207953305-"; structure "1^,2^"; splice_chain "207988700^,207988498^"; psi "0.220913";
chr2	juncbase	jcn_only_AD	160615846	160619391	.	-	.	gene_id "jcn_only_AD.713"; transcript_id "jcn_only_AD.713"; gene_name "CUFF.1975"; flanks "160615846-,160619391-"; structure "1^,2^"; splice_chain "160615846^,160615869^"; psi "0.870100";
chr4	juncbase	jcn_only_AD	124582988	124750250	.	-	.	gene_id "jcn_only_AD.714"; transcript_id "jcn_only_AD.714"; gene_name "CUFF.1975"; flanks "124582988-,124750250-"; structure "1^,2^"; splice_chain "124582988^,124695530^"; psi "0.907800";
chr22	juncbase	intron_retention	51020678	51019089	.	-	.	gene_id "intron_retention.686"; transcript_id "intron_retention.686"; gene_name "CUFF.1975"; flanks "51020678-,51019089^"; structure "0,1^2-"; splice_chain ",51020678^51019089-"; psi "0.505200";
chr16	juncbase	intron_retention	4411986	4411470	.	-	.	gene_id "intron_retention.687"; transcript_id "intron_retention.687"; gene_name "CUFF.1975"; flanks "4411986-,4411470^"; structure "0,1^2-"; splice_chain ",4411986^4411470-"; psi "0.157800";
chr2	juncbase	intron_retention	242610840	242611606	.	-	.	gene_id "intron_retention.688"; transcript_id "intron_retention.688"; gene_name "CUFF.1975"; flanks "242610840-,242611606^"; structure "0,1^2-"; splice_chain ",242610840^242611606-"; psi "0.924900";
chr7	juncbase	intron_retention	107569857	107569650	.	-	.	gene_id "intron_retention.689"; transcript_id "intron_retention.689"; gene_name "CUFF.1975"; flanks "107569857-,107569650^"; structure "0,1^2-"; splice_chain ",107569857^107569650-"; psi "0.421100";
chr22	juncbase	intron_retention	30736684	30736370	.	-	.	gene_id "intron_retention.690"; transcript_id "intron_retention.690"; gene_name "CUFF.1975"; flanks "30736684-,30736370^"; structure "0,1^2-"; splice_chain ",30736684^30736370-"; psi "0.526300";
chr12	juncbase	cassette	22612426	22610095	.	-	.	gene_id "cassette.529"; transcript_id "cassette.529"; gene_name "CUFF.1975"; flanks "22612426^,22610095-"; structure "0,1-2^"; splice_chain ",22611519-22611418^"; psi "0.833300";
chr6	juncbase	cassette	170115804	170112635	.	-	.	gene_id "cassette.530"; transcript_id "cassette.530"; gene_name "CUFF.1975"; flanks "170115804^,170112635-"; structure "0,1-2^"; splice_chain ",170114938-170114829^"; psi "0.880000";
chr10	juncbase	cassette	123661906	123629553	.	-	.	gene_id "cassette.531"; transcript_id "cassette.531"; gene_name "CUFF.1975"; flanks "123661906^,123629553-"; structure "0,1-2^"; splice_chain ",123659509-123659381^"; psi "0.765600";
chr13	juncbase	jcn_only_AA	51796705	51805484	.	-	.	gene_id "jcn_only_AA.588"; transcript_id "jcn_only_AA.588"; gene_name "CUFF.1975"; flanks "51796705^,51805484^"; structure "1-,2-"; splice_chain "51799257-,51805484-"; psi "0.219200";
chr4	juncbase	jcn_only_AA	2934833	2934417	.	-	.	gene_id "jcn_only_AA.589"; transcript_id "jcn_only_AA.589"; gene_name "CUFF.1975"; flanks "2934833^,2934417^"; structure "1-,2-"; splice_chain "2934485-,2934417-"; psi "0.101700";
chr10	juncbase	jcn_only_AD	17645559	17636382	.	-	.	gene_id "jcn_only_AD.715"; transcript_id "jcn_only_AD.715"; gene_name "CUFF.1975"; flanks "17645559-,17636382-"; structure "1^,2^"; splice_chain "17645559^,17641289^"; psi "0.333300";
chr19	juncbase	cassette	14867050	14862483	.	-	.	gene_id "cassette.532"; transcript_id "cassette.532"; gene_name "CUFF.1975"; flanks "14867050^,14862483-"; structure "0,1-2^"; splice_chain ",14863338-14863141^"; psi "0.942400";
chr1	juncbase	cassette	196913068	196927021	.	-	.	gene_id "cassette.533"; transcript_id "cassette.533"; gene_name "CUFF.1975"; flanks "196913068^,196927021-"; structure "0,1-2^"; splice_chain ",196919982-196920158^"; psi "0.737500";
chr14	juncbase	cassette	58925263	58927704	.	-	.	gene_id "cassette.534"; transcript_id "cassette.534"; gene_name "CUFF.1975"; flanks "58925263^,58927704-"; structure "0,1-2^"; splice_chain ",58926561-58926788^"; psi "0.916700";
chr11	juncbase	jcn_only_AA	63998412	63999343	.	-	.	gene_id "jcn_only_AA.590"; transcript_id "jcn_only_AA.590"; gene_name "CUFF.1975"; flanks "63998412^,63999343^"; structure "1-,2-"; splice_chain "63998504-,63999343-"; psi "0.807400";
chr6	juncbase	intron_retention	31938383	31938255	.	-	.	gene_id "intron_retention.691"; transcript_id "intron_retention.691"; gene_name "CUFF.1975"; flanks "31938383-,31938255^"; structure "0,1^2-"; splice_chain ",31938383^31938255-"; psi "0.014000";
chr19	juncbase	intron_retention	39924305	39924209	.	-	.	gene_id "intron_retention.692"; transcript_id "intron_retention.692"; gene_name "CUFF.1975"; flanks "39924305-,39924209^"; structure "0,1^2-"; splice_chain ",39924305^39924209-"; psi "0.661900";
chr4	juncbase	cassette	152069074	152065202	.	-	.	gene_id "cassette.535"; transcript_id "cassette.535"; gene_name "CUFF.1975"; flanks "152069074^,152065202-"; structure "0,1-2^"; splice_chain ",152065440-152065372^"; psi "0.336400";
chr16	juncbase	intron_retention	70400165	70400527	.	-	.	gene_id "intron_retention.693"; transcript_id "intron_retention.693"; gene_name "CUFF.1975"; flanks "70400165-,70400527^"; structure "0,1^2-"; splice_chain ",70400165^70400527-"; psi "0.339400";
chr1	juncbase	jcn_only_AD	167301772	167334704	.	-	.	gene_id "jcn_only_AD.716"; transcript_id "jcn_only_AD.716"; gene_name "CUFF.1975"; flanks "167301772-,167334704-"; structure "1^,2^"; splice_chain "167301772^,167326758^"; psi "0.780300";
chr4	juncbase	cassette	37839235	37841470	.	-	.	gene_id "cassette.536"; transcript_id "cassette.536"; gene_name "CUFF.1975"; flanks "37839235^,37841470-"; structure "0,1-2^"; splice_chain ",37841139-37841305^"; psi "0.963000";
chr10	juncbase	jcn_only_AD	27149676	27112234	.	-	.	gene_id "jcn_only_AD.717"; transcript_id "jcn_only_AD.717"; gene_name "CUFF.1975"; flanks "27149676-,27112234-"; structure "1^,2^"; splice_chain "27149676^,27128662^"; psi "0.983600";
chr16	juncbase	jcn_only_AD	2141609	2142890	.	-	.	gene_id "jcn_only_AD.718"; transcript_id "jcn_only_AD.718"; gene_name "CUFF.1975"; flanks "2141609-,2142890-"; structure "1^,2^"; splice_chain "2141609^,2141615^"; psi "0.249600";
chr15	juncbase	cassette	55727103	55722977	.	-	.	gene_id "cassette.537"; transcript_id "cassette.537"; gene_name "CUFF.1975"; flanks "55727103^,55722977-"; structure "0,1-2^"; splice_chain ",55724800-55724695^"; psi "0.185700";
chr3	juncbase	intron_retention	141713862	141697524	.	-	.	gene_id "intron_retention.694"; transcript_id "intron_retention.694"; gene_name "CUFF.1975"; flanks "141713862-,141697524^"; structure "0,1^2-"; splice_chain ",141713862^141697524-"; psi "0.684200";
chr2	juncbase	jcn_only_AD	69901155	69870406	.	-	.	gene_id "jcn_only_AD.719"; transcript_id "jcn_only_AD.719"; gene_name "CUFF.1975"; flanks "69901155-,69870406-"; structure "1^,2^"; splice_chain "69901155^,69870875^"; psi "0.231612";
chr2	juncbase	jcn_only_AD	69870924	69870406	.	-	.	gene_id "jcn_only_AD.720"; transcript_id "jcn_only_AD.720"; gene_name "CUFF.1975"; flanks "69870924-,69870406-"; structure "1^,2^"; splice_chain "69870924^,69870875^"; psi "0.215085";
chr3	juncbase	intron_retention	28357914	28360223	.	-	.	gene_id "intron_retention.695"; transcript_id "intron_retention.695"; gene_name "CUFF.1975"; flanks "28357914-,28360223^"; structure "0,1^2-"; splice_chain ",28357914^28360223-"; psi "0.902900";
chr15	juncbase	cassette	29131424	29213843	.	-	.	gene_id "cassette.538"; transcript_id "cassette.538"; gene_name "CUFF.1975"; flanks "29131424^,29213843-"; structure "0,1-2^"; splice_chain ",29140666-29140755^"; psi "0.962700";
chr17	juncbase	jcn_only_AA	79225293	79220858	.	-	.	gene_id "jcn_only_AA.591"; transcript_id "jcn_only_AA.591"; gene_name "CUFF.1975"; flanks "79225293^,79220858^"; structure "1-,2-"; splice_chain "79220861-,79220858-"; psi "0.495104";
chr16	juncbase	jcn_only_AD	22448813	22462941	.	-	.	gene_id "jcn_only_AD.721"; transcript_id "jcn_only_AD.721"; gene_name "CUFF.1975"; flanks "22448813-,22462941-"; structure "1^,2^"; splice_chain "22448813^,22449058^"; psi "0.850600";
chr1	juncbase	jcn_only_AD	110211105	110211547	.	-	.	gene_id "jcn_only_AD.722"; transcript_id "jcn_only_AD.722"; gene_name "CUFF.1975"; flanks "110211105-,110211547-"; structure "1^,2^"; splice_chain "110211105^,110211122^"; psi "0.138100";
chr15	juncbase	cassette	55783321	55742565	.	-	.	gene_id "cassette.539"; transcript_id "cassette.539"; gene_name "CUFF.1975"; flanks "55783321^,55742565-"; structure "0,1-2^"; splice_chain ",55759359-55759128^"; psi "0.839600";
chr11	juncbase	jcn_only_AD	8615291	8496363	.	-	.	gene_id "jcn_only_AD.723"; transcript_id "jcn_only_AD.723"; gene_name "CUFF.1975"; flanks "8615291-,8496363-"; structure "1^,2^"; splice_chain "8615291^,8588798^"; psi "0.799956";
chr10	juncbase	intron_retention	35379358	35360267	.	-	.	gene_id "intron_retention.696"; transcript_id "intron_retention.696"; gene_name "CUFF.1975"; flanks "35379358-,35360267^"; structure "0,1^2-"; splice_chain ",35379358^35360267-"; psi "0.150900";
chr19	juncbase	jcn_only_AA	17597766	17597983	.	-	.	gene_id "jcn_only_AA.592"; transcript_id "jcn_only_AA.592"; gene_name "CUFF.1975"; flanks "17597766^,17597983^"; structure "1-,2-"; splice_chain "17597909-,17597983-"; psi "0.642000";
chr7	juncbase	jcn_only_AD	150784159	150813880	.	-	.	gene_id "jcn_only_AD.724"; transcript_id "jcn_only_AD.724"; gene_name "CUFF.1975"; flanks "150784159-,150813880-"; structure "1^,2^"; splice_chain "150784159^,150784291^"; psi "0.803306";
chr7	juncbase	jcn_only_AD	150783147	150813880	.	-	.	gene_id "jcn_only_AD.725"; transcript_id "jcn_only_AD.725"; gene_name "CUFF.1975"; flanks "150783147-,150813880-"; structure "1^,2^"; splice_chain "150783147^,150784291^"; psi "0.537864";
chr7	juncbase	jcn_only_AD	150783096	150813880	.	-	.	gene_id "jcn_only_AD.726"; transcript_id "jcn_only_AD.726"; gene_name "CUFF.1975"; flanks "150783096-,150813880-"; structure "1^,2^"; splice_chain "150783096^,150784291^"; psi "0.399748";
chr13	juncbase	cassette	21230569	21237637	.	-	.	gene_id "cassette.540"; transcript_id "cassette.540"; gene_name "CUFF.1975"; flanks "21230569^,21237637-"; structure "0,1-2^"; splice_chain ",21237402-21237525^"; psi "0.756400";
chr12	juncbase	intron_retention	69218348	69233555	.	-	.	gene_id "intron_retention.697"; transcript_id "intron_retention.697"; gene_name "CUFF.1975"; flanks "69218348-,69233555^"; structure "0,1^2-"; splice_chain ",69218348^69233555-"; psi "0.930000";
chr17	juncbase	intron_retention	40761104	40738155	.	-	.	gene_id "intron_retention.698"; transcript_id "intron_retention.698"; gene_name "CUFF.1975"; flanks "40761104-,40738155^"; structure "0,1^2-"; splice_chain ",40761104^40738155-"; psi "0.854400";
chr4	juncbase	intron_retention	2933772	2933663	.	-	.	gene_id "intron_retention.699"; transcript_id "intron_retention.699"; gene_name "CUFF.1975"; flanks "2933772-,2933663^"; structure "0,1^2-"; splice_chain ",2933772^2933663-"; psi "0.341300";
chr15	juncbase	jcn_only_AD	97326819	97327383	.	-	.	gene_id "jcn_only_AD.727"; transcript_id "jcn_only_AD.727"; gene_name "CUFF.1975"; flanks "97326819-,97327383-"; structure "1^,2^"; splice_chain "97326819^,97327060^"; psi "0.729296";
chr15	juncbase	jcn_only_AD	97326974	97327383	.	-	.	gene_id "jcn_only_AD.728"; transcript_id "jcn_only_AD.728"; gene_name "CUFF.1975"; flanks "97326974-,97327383-"; structure "1^,2^"; splice_chain "97326974^,97327060^"; psi "0.386352";
chr22	juncbase	intron_retention	21058171	21058256	.	-	.	gene_id "intron_retention.700"; transcript_id "intron_retention.700"; gene_name "CUFF.1975"; flanks "21058171-,21058256^"; structure "0,1^2-"; splice_chain ",21058171^21058256-"; psi "0.213000";
chr16	juncbase	jcn_only_AA	603041	604554	.	-	.	gene_id "jcn_only_AA.593"; transcript_id "jcn_only_AA.593"; gene_name "CUFF.1975"; flanks "603041^,604554^"; structure "1-,2-"; splice_chain "603339-,604554-"; psi "0.321200";
chr6	juncbase	cassette	128718711	128563747	.	-	.	gene_id "cassette.541"; transcript_id "cassette.541"; gene_name "CUFF.1975"; flanks "128718711^,128563747-"; structure "0,1-2^"; splice_chain ",128643455-128643184^"; psi "0.944500";
chr1	juncbase	jcn_only_AA	167345392	167353094	.	-	.	gene_id "jcn_only_AA.594"; transcript_id "jcn_only_AA.594"; gene_name "CUFF.1975"; flanks "167345392^,167353094^"; structure "1-,2-"; splice_chain "167345790-,167353094-"; psi "0.760200";
chr10	juncbase	jcn_only_AA	96954434	96961742	.	-	.	gene_id "jcn_only_AA.595"; transcript_id "jcn_only_AA.595"; gene_name "CUFF.1975"; flanks "96954434^,96961742^"; structure "1-,2-"; splice_chain "96961198-,96961742-"; psi "0.973600";
chr8	juncbase	intron_retention	144356972	144358173	.	-	.	gene_id "intron_retention.701"; transcript_id "intron_retention.701"; gene_name "CUFF.1975"; flanks "144356972-,144358173^"; structure "0,1^2-"; splice_chain ",144356972^144358173-"; psi "0.932600";
chr9	juncbase	cassette	35259047	35295693	.	-	.	gene_id "cassette.542"; transcript_id "cassette.542"; gene_name "CUFF.1975"; flanks "35259047^,35295693-"; structure "0,1-2^"; splice_chain ",35291066-35291101^"; psi "0.428600";
chr7	juncbase	jcn_only_AA	150815431	150815592	.	-	.	gene_id "jcn_only_AA.596"; transcript_id "jcn_only_AA.596"; gene_name "CUFF.1975"; flanks "150815431^,150815592^"; structure "1-,2-"; splice_chain "150815561-,150815592-"; psi "0.866100";
chr4	juncbase	jcn_only_AD	74481608	74459310	.	-	.	gene_id "jcn_only_AD.729"; transcript_id "jcn_only_AD.729"; gene_name "CUFF.1975"; flanks "74481608-,74459310-"; structure "1^,2^"; splice_chain "74481608^,74464357^"; psi "0.282400";
chr11	juncbase	jcn_only_AA	63999436	64001366	.	-	.	gene_id "jcn_only_AA.597"; transcript_id "jcn_only_AA.597"; gene_name "CUFF.1975"; flanks "63999436^,64001366^"; structure "1-,2-"; splice_chain "63999982-,64001366-"; psi "0.164628";
chr17	juncbase	intron_retention	1617150	1616198	.	-	.	gene_id "intron_retention.702"; transcript_id "intron_retention.702"; gene_name "CUFF.1975"; flanks "1617150-,1616198^"; structure "0,1^2-"; splice_chain ",1617150^1616198-"; psi "0.841000";
chr17	juncbase	intron_retention	61568729	61571283	.	-	.	gene_id "intron_retention.703"; transcript_id "intron_retention.703"; gene_name "CUFF.1975"; flanks "61568729-,61571283^"; structure "0,1^2-"; splice_chain ",61568729^61571283-"; psi "0.562500";
chr11	juncbase	intron_retention	65479916	65480237	.	-	.	gene_id "intron_retention.704"; transcript_id "intron_retention.704"; gene_name "CUFF.1975"; flanks "65479916-,65480237^"; structure "0,1^2-"; splice_chain ",65479916^65480237-"; psi "0.090000";
chr19	juncbase	intron_retention	18119586	18119780	.	-	.	gene_id "intron_retention.705"; transcript_id "intron_retention.705"; gene_name "CUFF.1975"; flanks "18119586-,18119780^"; structure "0,1^2-"; splice_chain ",18119586^18119780-"; psi "0.245400";
chr11	juncbase	intron_retention	75524648	75522581	.	-	.	gene_id "intron_retention.706"; transcript_id "intron_retention.706"; gene_name "CUFF.1975"; flanks "75524648-,75522581^"; structure "0,1^2-"; splice_chain ",75524648^75522581-"; psi "0.767700";
chr17	juncbase	intron_retention	5487613	5487423	.	-	.	gene_id "intron_retention.707"; transcript_id "intron_retention.707"; gene_name "CUFF.1975"; flanks "5487613-,5487423^"; structure "0,1^2-"; splice_chain ",5487613^5487423-"; psi "0.830600";
chr1	juncbase	intron_retention	245246990	245254796	.	-	.	gene_id "intron_retention.708"; transcript_id "intron_retention.708"; gene_name "CUFF.1975"; flanks "245246990-,245254796^"; structure "0,1^2-"; splice_chain ",245246990^245254796-"; psi "0.750000";
chr2	juncbase	intron_retention	79365498	79365202	.	-	.	gene_id "intron_retention.709"; transcript_id "intron_retention.709"; gene_name "CUFF.1975"; flanks "79365498-,79365202^"; structure "0,1^2-"; splice_chain ",79365498^79365202-"; psi "0.030900";
chr19	juncbase	jcn_only_AA	44768528	44770351	.	-	.	gene_id "jcn_only_AA.598"; transcript_id "jcn_only_AA.598"; gene_name "CUFF.1975"; flanks "44768528^,44770351^"; structure "1-,2-"; splice_chain "44770308-,44770351-"; psi "0.703400";
chr12	juncbase	cassette	49351093	49334971	.	-	.	gene_id "cassette.543"; transcript_id "cassette.543"; gene_name "CUFF.1975"; flanks "49351093^,49334971-"; structure "0,1-2^"; splice_chain ",49349980-49349881^"; psi "0.684700";
chr17	juncbase	jcn_only_AD	6352727	6353682	.	-	.	gene_id "jcn_only_AD.730"; transcript_id "jcn_only_AD.730"; gene_name "CUFF.1975"; flanks "6352727-,6353682-"; structure "1^,2^"; splice_chain "6352727^,6353392^"; psi "0.353400";
chr19	juncbase	intron_retention	21636352	21636081	.	-	.	gene_id "intron_retention.710"; transcript_id "intron_retention.710"; gene_name "CUFF.1975"; flanks "21636352-,21636081^"; structure "0,1^2-"; splice_chain ",21636352^21636081-"; psi "0.643900";
chr12	juncbase	jcn_only_AD	4430469	4440446	.	-	.	gene_id "jcn_only_AD.731"; transcript_id "jcn_only_AD.731"; gene_name "CUFF.1975"; flanks "4430469-,4440446-"; structure "1^,2^"; splice_chain "4430469^,4433929^"; psi "0.793100";
chrX	juncbase	cassette	15349712	15343274	.	-	.	gene_id "cassette.544"; transcript_id "cassette.544"; gene_name "CUFF.1975"; flanks "15349712^,15343274-"; structure "0,1-2^"; splice_chain ",15344168-15344036^"; psi "0.362200";
chr9	juncbase	intron_retention	35076519	35074429	.	-	.	gene_id "intron_retention.711"; transcript_id "intron_retention.711"; gene_name "CUFF.1975"; flanks "35076519-,35074429^"; structure "0,1^2-"; splice_chain ",35076519^35074429-"; psi "0.189900";
chr19	juncbase	intron_retention	1438427	1438806	.	-	.	gene_id "intron_retention.712"; transcript_id "intron_retention.712"; gene_name "CUFF.1975"; flanks "1438427-,1438806^"; structure "0,1^2-"; splice_chain ",1438427^1438806-"; psi "0.570400";
chr17	juncbase	cassette	25974144	25975862	.	-	.	gene_id "cassette.545"; transcript_id "cassette.545"; gene_name "CUFF.1975"; flanks "25974144^,25975862-"; structure "0,1-2^"; splice_chain ",25974296-25974458^"; psi "0.633500";
chr18	juncbase	jcn_only_AD	11999186	12009882	.	-	.	gene_id "jcn_only_AD.732"; transcript_id "jcn_only_AD.732"; gene_name "CUFF.1975"; flanks "11999186-,12009882-"; structure "1^,2^"; splice_chain "11999186^,12008590^"; psi "0.951700";
chr11	juncbase	cassette	407062	406538	.	-	.	gene_id "cassette.546"; transcript_id "cassette.546"; gene_name "CUFF.1975"; flanks "407062^,406538-"; structure "0,1-2^"; splice_chain ",406993-406843^"; psi "0.572500";
chr18	juncbase	jcn_only_AA	77891075	77893495	.	-	.	gene_id "jcn_only_AA.599"; transcript_id "jcn_only_AA.599"; gene_name "CUFF.1975"; flanks "77891075^,77893495^"; structure "1-,2-"; splice_chain "77891575-,77893495-"; psi "0.892200";
chr4	juncbase	jcn_only_AA	69078080	69057242	.	-	.	gene_id "jcn_only_AA.600"; transcript_id "jcn_only_AA.600"; gene_name "CUFF.1975"; flanks "69078080^,69057242^"; structure "1-,2-"; splice_chain "69071815-,69057242-"; psi "0.750000";
chr17	juncbase	jcn_only_AA	15586350	15584536	.	-	.	gene_id "jcn_only_AA.601"; transcript_id "jcn_only_AA.601"; gene_name "CUFF.1975"; flanks "15586350^,15584536^"; structure "1-,2-"; splice_chain "15586278-,15584536-"; psi "0.268272";
chr17	juncbase	jcn_only_AA	15586350	15586265	.	-	.	gene_id "jcn_only_AA.602"; transcript_id "jcn_only_AA.602"; gene_name "CUFF.1975"; flanks "15586350^,15586265^"; structure "1-,2-"; splice_chain "15586278-,15586265-"; psi "0.844963";
chr17	juncbase	jcn_only_AA	15586350	15584267	.	-	.	gene_id "jcn_only_AA.603"; transcript_id "jcn_only_AA.603"; gene_name "CUFF.1975"; flanks "15586350^,15584267^"; structure "1-,2-"; splice_chain "15586278-,15584267-"; psi "0.831685";
chr12	juncbase	cassette	56567480	56566488	.	-	.	gene_id "cassette.547"; transcript_id "cassette.547"; gene_name "CUFF.1975"; flanks "56567480^,56566488-"; structure "0,1-2^"; splice_chain ",56566813-56566721^"; psi "0.205400";
chr17	juncbase	jcn_only_AD	61561902	61562597	.	-	.	gene_id "jcn_only_AD.733"; transcript_id "jcn_only_AD.733"; gene_name "CUFF.1975"; flanks "61561902-,61562597-"; structure "1^,2^"; splice_chain "61561902^,61562330^"; psi "0.721185";
chr15	juncbase	jcn_only_AA	25207356	25222925	.	-	.	gene_id "jcn_only_AA.604"; transcript_id "jcn_only_AA.604"; gene_name "CUFF.1975"; flanks "25207356^,25222925^"; structure "1-,2-"; splice_chain "25213079-,25222925-"; psi "0.361800";
chr7	juncbase	jcn_only_AD	150815719	150817074	.	-	.	gene_id "jcn_only_AD.734"; transcript_id "jcn_only_AD.734"; gene_name "CUFF.1975"; flanks "150815719-,150817074-"; structure "1^,2^"; splice_chain "150815719^,150816341^"; psi "0.880528";
chr7	juncbase	jcn_only_AD	150815718	150817074	.	-	.	gene_id "jcn_only_AD.735"; transcript_id "jcn_only_AD.735"; gene_name "CUFF.1975"; flanks "150815718-,150817074-"; structure "1^,2^"; splice_chain "150815718^,150816341^"; psi "0.009129";
chr10	juncbase	cassette	76287524	76269267	.	-	.	gene_id "cassette.548"; transcript_id "cassette.548"; gene_name "CUFF.1975"; flanks "76287524^,76269267-"; structure "0,1-2^"; splice_chain ",76276659-76276481^"; psi "0.348600";
chr15	juncbase	jcn_only_AD	83357910	83350332	.	-	.	gene_id "jcn_only_AD.736"; transcript_id "jcn_only_AD.736"; gene_name "CUFF.1975"; flanks "83357910-,83350332-"; structure "1^,2^"; splice_chain "83357910^,83357488^"; psi "0.012500";
chr16	juncbase	jcn_only_AD	6028178	6400446	.	-	.	gene_id "jcn_only_AD.737"; transcript_id "jcn_only_AD.737"; gene_name "CUFF.1975"; flanks "6028178-,6400446-"; structure "1^,2^"; splice_chain "6028178^,6093176^"; psi "0.199095";
chr16	juncbase	jcn_only_AD	6028173	6400446	.	-	.	gene_id "jcn_only_AD.738"; transcript_id "jcn_only_AD.738"; gene_name "CUFF.1975"; flanks "6028173-,6400446-"; structure "1^,2^"; splice_chain "6028173^,6093176^"; psi "0.274590";
chr16	juncbase	jcn_only_AD	6093173	6400446	.	-	.	gene_id "jcn_only_AD.739"; transcript_id "jcn_only_AD.739"; gene_name "CUFF.1975"; flanks "6093173-,6400446-"; structure "1^,2^"; splice_chain "6093173^,6093176^"; psi "0.982021";
chr10	juncbase	jcn_only_AA	43572779	43607547	.	-	.	gene_id "jcn_only_AA.605"; transcript_id "jcn_only_AA.605"; gene_name "CUFF.1975"; flanks "43572779^,43607547^"; structure "1-,2-"; splice_chain "43595907-,43607547-"; psi "0.859400";
chr15	juncbase	cassette	64668942	64658274	.	-	.	gene_id "cassette.549"; transcript_id "cassette.549"; gene_name "CUFF.1975"; flanks "64668942^,64658274-"; structure "0,1-2^"; splice_chain ",64665963-64665897^"; psi "0.044400";
chr2	juncbase	intron_retention	242610820	242611606	.	-	.	gene_id "intron_retention.713"; transcript_id "intron_retention.713"; gene_name "CUFF.1975"; flanks "242610820-,242611606^"; structure "0,1^2-"; splice_chain ",242610820^242611606-"; psi "0.559900";
chr13	juncbase	intron_retention	21141924	21142024	.	-	.	gene_id "intron_retention.714"; transcript_id "intron_retention.714"; gene_name "CUFF.1975"; flanks "21141924-,21142024^"; structure "0,1^2-"; splice_chain ",21141924^21142024-"; psi "0.620700";
chr13	juncbase	jcn_only_AA	25541530	25525626	.	-	.	gene_id "jcn_only_AA.606"; transcript_id "jcn_only_AA.606"; gene_name "CUFF.1975"; flanks "25541530^,25525626^"; structure "1-,2-"; splice_chain "25539718-,25525626-"; psi "0.041400";
chr12	juncbase	cassette	49350768	49334971	.	-	.	gene_id "cassette.550"; transcript_id "cassette.550"; gene_name "CUFF.1975"; flanks "49350768^,49334971-"; structure "0,1-2^"; splice_chain ",49350133-49349881^"; psi "0.859900";
chr2	juncbase	intron_retention	110883214	110882900	.	-	.	gene_id "intron_retention.715"; transcript_id "intron_retention.715"; gene_name "CUFF.1975"; flanks "110883214-,110882900^"; structure "0,1^2-"; splice_chain ",110883214^110882900-"; psi "0.592600";
chr18	juncbase	jcn_only_AD	56033460	56034978	.	-	.	gene_id "jcn_only_AD.740"; transcript_id "jcn_only_AD.740"; gene_name "CUFF.1975"; flanks "56033460-,56034978-"; structure "1^,2^"; splice_chain "56033460^,56034458^"; psi "0.954000";
chr5	juncbase	intron_retention	54566406	54566315	.	-	.	gene_id "intron_retention.716"; transcript_id "intron_retention.716"; gene_name "CUFF.1975"; flanks "54566406-,54566315^"; structure "0,1^2-"; splice_chain ",54566406^54566315-"; psi "0.258100";
chr20	juncbase	intron_retention	33589888	33589962	.	-	.	gene_id "intron_retention.717"; transcript_id "intron_retention.717"; gene_name "CUFF.1975"; flanks "33589888-,33589962^"; structure "0,1^2-"; splice_chain ",33589888^33589962-"; psi "0.368900";
chr11	juncbase	jcn_only_AA	118402586	118402961	.	-	.	gene_id "jcn_only_AA.607"; transcript_id "jcn_only_AA.607"; gene_name "CUFF.1975"; flanks "118402586^,118402961^"; structure "1-,2-"; splice_chain "118402812-,118402961-"; psi "0.625889";
chr11	juncbase	jcn_only_AA	118402586	118403125	.	-	.	gene_id "jcn_only_AA.608"; transcript_id "jcn_only_AA.608"; gene_name "CUFF.1975"; flanks "118402586^,118403125^"; structure "1-,2-"; splice_chain "118402812-,118403125-"; psi "0.833333";
chr11	juncbase	jcn_only_AA	118402586	118403005	.	-	.	gene_id "jcn_only_AA.609"; transcript_id "jcn_only_AA.609"; gene_name "CUFF.1975"; flanks "118402586^,118403005^"; structure "1-,2-"; splice_chain "118402812-,118403005-"; psi "0.700778";
chr10	juncbase	jcn_only_AD	78647049	78637651	.	-	.	gene_id "jcn_only_AD.741"; transcript_id "jcn_only_AD.741"; gene_name "CUFF.1975"; flanks "78647049-,78637651-"; structure "1^,2^"; splice_chain "78647049^,78644747^"; psi "0.899200";
chr6	juncbase	jcn_only_AD	5260881	5109725	.	-	.	gene_id "jcn_only_AD.742"; transcript_id "jcn_only_AD.742"; gene_name "CUFF.1975"; flanks "5260881-,5109725-"; structure "1^,2^"; splice_chain "5260881^,5132952^"; psi "0.666667";
chr6	juncbase	jcn_only_AD	5144372	5109725	.	-	.	gene_id "jcn_only_AD.743"; transcript_id "jcn_only_AD.743"; gene_name "CUFF.1975"; flanks "5144372-,5109725-"; structure "1^,2^"; splice_chain "5144372^,5132952^"; psi "0.470021";
chr17	juncbase	jcn_only_AD	1945169	1945899	.	-	.	gene_id "jcn_only_AD.744"; transcript_id "jcn_only_AD.744"; gene_name "CUFF.1975"; flanks "1945169-,1945899-"; structure "1^,2^"; splice_chain "1945169^,1945525^"; psi "0.991900";
chr17	juncbase	intron_retention	42340220	42340094	.	-	.	gene_id "intron_retention.718"; transcript_id "intron_retention.718"; gene_name "CUFF.1975"; flanks "42340220-,42340094^"; structure "0,1^2-"; splice_chain ",42340220^42340094-"; psi "0.500000";
chr11	juncbase	jcn_only_AD	65479916	65480237	.	-	.	gene_id "jcn_only_AD.745"; transcript_id "jcn_only_AD.745"; gene_name "CUFF.1975"; flanks "65479916-,65480237-"; structure "1^,2^"; splice_chain "65479916^,65480068^"; psi "0.937200";
chr3	juncbase	cassette	132948195	133109024	.	-	.	gene_id "cassette.551"; transcript_id "cassette.551"; gene_name "CUFF.1975"; flanks "132948195^,133109024-"; structure "0,1-2^"; splice_chain ",133098596-133100005^"; psi "0.900600";
chr7	juncbase	jcn_only_AD	150815718	150817074	.	-	.	gene_id "jcn_only_AD.746"; transcript_id "jcn_only_AD.746"; gene_name "CUFF.1975"; flanks "150815718-,150817074-"; structure "1^,2^"; splice_chain "150815718^,150815719^"; psi "0.001248";
chr15	juncbase	jcn_only_AD	78537611	78501591	.	-	.	gene_id "jcn_only_AD.747"; transcript_id "jcn_only_AD.747"; gene_name "CUFF.1975"; flanks "78537611-,78501591-"; structure "1^,2^"; splice_chain "78537611^,78504891^"; psi "0.254500";
chr2	juncbase	jcn_only_AD	48898819	49003419	.	-	.	gene_id "jcn_only_AD.748"; transcript_id "jcn_only_AD.748"; gene_name "CUFF.1975"; flanks "48898819-,49003419-"; structure "1^,2^"; splice_chain "48898819^,48996260^"; psi "0.718562";
chr2	juncbase	jcn_only_AD	48996213	49003419	.	-	.	gene_id "jcn_only_AD.749"; transcript_id "jcn_only_AD.749"; gene_name "CUFF.1975"; flanks "48996213-,49003419-"; structure "1^,2^"; splice_chain "48996213^,48996260^"; psi "0.356331";
chr1	juncbase	jcn_only_AD	167190195	167272711	.	-	.	gene_id "jcn_only_AD.750"; transcript_id "jcn_only_AD.750"; gene_name "CUFF.1975"; flanks "167190195-,167272711-"; structure "1^,2^"; splice_chain "167190195^,167210847^"; psi "0.856500";
chr17	juncbase	intron_retention	15587510	15586471	.	-	.	gene_id "intron_retention.719"; transcript_id "intron_retention.719"; gene_name "CUFF.1975"; flanks "15587510-,15586471^"; structure "0,1^2-"; splice_chain ",15587510^15586471-"; psi "0.141300";
chr2	juncbase	intron_retention	177042731	177042549	.	-	.	gene_id "intron_retention.720"; transcript_id "intron_retention.720"; gene_name "CUFF.1975"; flanks "177042731-,177042549^"; structure "0,1^2-"; splice_chain ",177042731^177042549-"; psi "0.775600";
chr2	juncbase	intron_retention	286290	286203	.	-	.	gene_id "intron_retention.721"; transcript_id "intron_retention.721"; gene_name "CUFF.1975"; flanks "286290-,286203^"; structure "0,1^2-"; splice_chain ",286290^286203-"; psi "0.058800";
chr7	juncbase	jcn_only_AD	86595130	86594340	.	-	.	gene_id "jcn_only_AD.751"; transcript_id "jcn_only_AD.751"; gene_name "CUFF.1975"; flanks "86595130-,86594340-"; structure "1^,2^"; splice_chain "86595130^,86595125^"; psi "0.151500";
chr5	juncbase	cassette	56472227	56526673	.	-	.	gene_id "cassette.552"; transcript_id "cassette.552"; gene_name "CUFF.1975"; flanks "56472227^,56526673-"; structure "0,1-2^"; splice_chain ",56509901-56510020^"; psi "0.666700";
chr16	juncbase	intron_retention	3115711	3115785	.	-	.	gene_id "intron_retention.722"; transcript_id "intron_retention.722"; gene_name "CUFF.1975"; flanks "3115711-,3115785^"; structure "0,1^2-"; splice_chain ",3115711^3115785-"; psi "0.875000";
chr2	juncbase	cassette	86400773	86397964	.	-	.	gene_id "cassette.553"; transcript_id "cassette.553"; gene_name "CUFF.1975"; flanks "86400773^,86397964-"; structure "0,1-2^"; splice_chain ",86398504-86398331^"; psi "0.974600";
chr10	juncbase	jcn_only_AA	80808531	80722643	.	-	.	gene_id "jcn_only_AA.610"; transcript_id "jcn_only_AA.610"; gene_name "CUFF.1975"; flanks "80808531^,80722643^"; structure "1-,2-"; splice_chain "80804269-,80722643-"; psi "0.012300";
chr5	juncbase	intron_retention	140027509	140028056	.	-	.	gene_id "intron_retention.723"; transcript_id "intron_retention.723"; gene_name "CUFF.1975"; flanks "140027509-,140028056^"; structure "0,1^2-"; splice_chain ",140027509^140028056-"; psi "0.382800";
chr6	juncbase	intron_retention	114270332	114270251	.	-	.	gene_id "intron_retention.724"; transcript_id "intron_retention.724"; gene_name "CUFF.1975"; flanks "114270332-,114270251^"; structure "0,1^2-"; splice_chain ",114270332^114270251-"; psi "0.037300";
chr22	juncbase	intron_retention	51010435	51009962	.	-	.	gene_id "intron_retention.725"; transcript_id "intron_retention.725"; gene_name "CUFF.1975"; flanks "51010435-,51009962^"; structure "0,1^2-"; splice_chain ",51010435^51009962-"; psi "0.567800";
chr2	juncbase	cassette	11605898	11597359	.	-	.	gene_id "cassette.554"; transcript_id "cassette.554"; gene_name "CUFF.1975"; flanks "11605898^,11597359-"; structure "0,1-2^"; splice_chain ",11598477-11598407^"; psi "0.354800";
chr15	juncbase	intron_retention	64446951	64447590	.	-	.	gene_id "intron_retention.726"; transcript_id "intron_retention.726"; gene_name "CUFF.1975"; flanks "64446951-,64447590^"; structure "0,1^2-"; splice_chain ",64446951^64447590-"; psi "0.765600";
chr11	juncbase	jcn_only_AD	124768294	124767157	.	-	.	gene_id "jcn_only_AD.752"; transcript_id "jcn_only_AD.752"; gene_name "CUFF.1975"; flanks "124768294-,124767157-"; structure "1^,2^"; splice_chain "124768294^,124767622^"; psi "0.198760";
chr11	juncbase	cassette	119293823	119291096	.	-	.	gene_id "cassette.555"; transcript_id "cassette.555"; gene_name "CUFF.1975"; flanks "119293823^,119291096-"; structure "0,1-2^"; splice_chain ",119291639-119291579^"; psi "0.975900";
chr11	juncbase	jcn_only_AA	409868	409101	.	-	.	gene_id "jcn_only_AA.611"; transcript_id "jcn_only_AA.611"; gene_name "CUFF.1975"; flanks "409868^,409101^"; structure "1-,2-"; splice_chain "409308-,409101-"; psi "0.666700";
chr7	juncbase	jcn_only_AA	111127294	110603621	.	-	.	gene_id "jcn_only_AA.612"; transcript_id "jcn_only_AA.612"; gene_name "CUFF.1975"; flanks "111127294^,110603621^"; structure "1-,2-"; splice_chain "111123784-,110603621-"; psi "0.982600";
chr10	juncbase	cassette	70661227	70666467	.	-	.	gene_id "cassette.556"; transcript_id "cassette.556"; gene_name "CUFF.1975"; flanks "70661227^,70666467-"; structure "0,1-2^"; splice_chain ",70666040-70666093^"; psi "0.859200";
chr11	juncbase	intron_retention	117072657	117073718	.	-	.	gene_id "intron_retention.727"; transcript_id "intron_retention.727"; gene_name "CUFF.1975"; flanks "117072657-,117073718^"; structure "0,1^2-"; splice_chain ",117072657^117073718-"; psi "0.706900";
chr14	juncbase	cassette	77279107	77275986	.	-	.	gene_id "cassette.557"; transcript_id "cassette.557"; gene_name "CUFF.1975"; flanks "77279107^,77275986-"; structure "0,1-2^"; splice_chain ",77276597-77276432^"; psi "0.970000";
chr16	juncbase	intron_retention	23505624	23504908	.	-	.	gene_id "intron_retention.728"; transcript_id "intron_retention.728"; gene_name "CUFF.1975"; flanks "23505624-,23504908^"; structure "0,1^2-"; splice_chain ",23505624^23504908-"; psi "0.035000";
chr16	juncbase	intron_retention	67223874	67223670	.	-	.	gene_id "intron_retention.729"; transcript_id "intron_retention.729"; gene_name "CUFF.1975"; flanks "67223874-,67223670^"; structure "0,1^2-"; splice_chain ",67223874^67223670-"; psi "0.111100";
chr11	juncbase	jcn_only_AD	119252183	119244231	.	-	.	gene_id "jcn_only_AD.753"; transcript_id "jcn_only_AD.753"; gene_name "CUFF.1975"; flanks "119252183-,119244231-"; structure "1^,2^"; splice_chain "119252183^,119249717^"; psi "0.119381";
chr1	juncbase	jcn_only_AA	106145899	106132407	.	-	.	gene_id "jcn_only_AA.613"; transcript_id "jcn_only_AA.613"; gene_name "CUFF.1975"; flanks "106145899^,106132407^"; structure "1-,2-"; splice_chain "106144007-,106132407-"; psi "0.685200";
chr19	juncbase	jcn_only_AA	6199487	6148340	.	-	.	gene_id "jcn_only_AA.614"; transcript_id "jcn_only_AA.614"; gene_name "CUFF.1975"; flanks "6199487^,6148340^"; structure "1-,2-"; splice_chain "6192040-,6148340-"; psi "0.722250";
chr19	juncbase	jcn_only_AA	6199487	6176454	.	-	.	gene_id "jcn_only_AA.615"; transcript_id "jcn_only_AA.615"; gene_name "CUFF.1975"; flanks "6199487^,6176454^"; structure "1-,2-"; splice_chain "6192040-,6176454-"; psi "0.447232";
chr14	juncbase	jcn_only_AA	24572464	24573051	.	-	.	gene_id "jcn_only_AA.616"; transcript_id "jcn_only_AA.616"; gene_name "CUFF.1975"; flanks "24572464^,24573051^"; structure "1-,2-"; splice_chain "24572719-,24573051-"; psi "0.055500";
chr14	juncbase	cassette	24564054	24567412	.	-	.	gene_id "cassette.558"; transcript_id "cassette.558"; gene_name "CUFF.1975"; flanks "24564054^,24567412-"; structure "0,1-2^"; splice_chain ",24566101-24566346^"; psi "0.861700";
chr19	juncbase	intron_retention	21637185	21636579	.	-	.	gene_id "intron_retention.730"; transcript_id "intron_retention.730"; gene_name "CUFF.1975"; flanks "21637185-,21636579^"; structure "0,1^2-"; splice_chain ",21637185^21636579-"; psi "0.038000";
chr9	juncbase	jcn_only_AD	125027217	125033232	.	-	.	gene_id "jcn_only_AD.754"; transcript_id "jcn_only_AD.754"; gene_name "CUFF.1975"; flanks "125027217-,125033232-"; structure "1^,2^"; splice_chain "125027217^,125028059^"; psi "0.948400";
chr17	juncbase	intron_retention	1617150	1616189	.	-	.	gene_id "intron_retention.731"; transcript_id "intron_retention.731"; gene_name "CUFF.1975"; flanks "1617150-,1616189^"; structure "0,1^2-"; splice_chain ",1617150^1616189-"; psi "0.883800";
chr19	juncbase	intron_retention	17445920	17448817	.	-	.	gene_id "intron_retention.732"; transcript_id "intron_retention.732"; gene_name "CUFF.1975"; flanks "17445920-,17448817^"; structure "0,1^2-"; splice_chain ",17445920^17448817-"; psi "0.783200";
chr12	juncbase	cassette	25801428	25699488	.	-	.	gene_id "cassette.559"; transcript_id "cassette.559"; gene_name "CUFF.1975"; flanks "25801428^,25699488-"; structure "0,1-2^"; splice_chain ",25702480-25702260^"; psi "0.929000";
chr12	juncbase	intron_retention	13366755	13367468	.	-	.	gene_id "intron_retention.733"; transcript_id "intron_retention.733"; gene_name "CUFF.1975"; flanks "13366755-,13367468^"; structure "0,1^2-"; splice_chain ",13366755^13367468-"; psi "0.500000";
chr14	juncbase	jcn_only_AA	50074839	50080974	.	-	.	gene_id "jcn_only_AA.617"; transcript_id "jcn_only_AA.617"; gene_name "CUFF.1975"; flanks "50074839^,50080974^"; structure "1-,2-"; splice_chain "50079190-,50080974-"; psi "0.906700";
chr2	juncbase	cassette	11597305	11593924	.	-	.	gene_id "cassette.560"; transcript_id "cassette.560"; gene_name "CUFF.1975"; flanks "11597305^,11593924-"; structure "0,1-2^"; splice_chain ",11595600-11595468^"; psi "0.444400";
chr2	juncbase	jcn_only_AA	171264354	171300477	.	-	.	gene_id "jcn_only_AA.618"; transcript_id "jcn_only_AA.618"; gene_name "CUFF.1975"; flanks "171264354^,171300477^"; structure "1-,2-"; splice_chain "171268211-,171300477-"; psi "0.519400";
chr20	juncbase	jcn_only_AD	33567607	33568381	.	-	.	gene_id "jcn_only_AD.755"; transcript_id "jcn_only_AD.755"; gene_name "CUFF.1975"; flanks "33567607-,33568381-"; structure "1^,2^"; splice_chain "33567607^,33568282^"; psi "0.887100";
chr19	juncbase	jcn_only_AD	17445920	17448817	.	-	.	gene_id "jcn_only_AD.756"; transcript_id "jcn_only_AD.756"; gene_name "CUFF.1975"; flanks "17445920-,17448817-"; structure "1^,2^"; splice_chain "17445920^,17447966^"; psi "0.719745";
chr19	juncbase	jcn_only_AD	17447843	17448817	.	-	.	gene_id "jcn_only_AD.757"; transcript_id "jcn_only_AD.757"; gene_name "CUFF.1975"; flanks "17447843-,17448817-"; structure "1^,2^"; splice_chain "17447843^,17447966^"; psi "0.968093";
chr4	juncbase	intron_retention	142245956	142244772	.	-	.	gene_id "intron_retention.734"; transcript_id "intron_retention.734"; gene_name "CUFF.1975"; flanks "142245956-,142244772^"; structure "0,1^2-"; splice_chain ",142245956^142244772-"; psi "0.527300";
chr1	juncbase	intron_retention	200860530	200867520	.	-	.	gene_id "intron_retention.735"; transcript_id "intron_retention.735"; gene_name "CUFF.1975"; flanks "200860530-,200867520^"; structure "0,1^2-"; splice_chain ",200860530^200867520-"; psi "0.500000";
chr14	juncbase	cassette	104263708	104251251	.	-	.	gene_id "cassette.561"; transcript_id "cassette.561"; gene_name "CUFF.1975"; flanks "104263708^,104251251-"; structure "0,1-2^"; splice_chain ",104261000-104260914^"; psi "0.570600";
chr1	juncbase	jcn_only_AD	174124765	174084787	.	-	.	gene_id "jcn_only_AD.758"; transcript_id "jcn_only_AD.758"; gene_name "CUFF.1975"; flanks "174124765-,174084787-"; structure "1^,2^"; splice_chain "174124765^,174091222^"; psi "0.870200";
chr8	juncbase	jcn_only_AD	80962680	80956443	.	-	.	gene_id "jcn_only_AD.759"; transcript_id "jcn_only_AD.759"; gene_name "CUFF.1975"; flanks "80962680-,80956443-"; structure "1^,2^"; splice_chain "80962680^,80962581^"; psi "0.468000";
chr11	juncbase	cassette	118401949	118403632	.	-	.	gene_id "cassette.562"; transcript_id "cassette.562"; gene_name "CUFF.1975"; flanks "118401949^,118403632-"; structure "0,1-2^"; splice_chain ",118402490-118402586^"; psi "0.718800";
chr15	juncbase	jcn_only_AA	57574796	57583027	.	-	.	gene_id "jcn_only_AA.619"; transcript_id "jcn_only_AA.619"; gene_name "CUFF.1975"; flanks "57574796^,57583027^"; structure "1-,2-"; splice_chain "57578355-,57583027-"; psi "0.151213";
chr15	juncbase	jcn_only_AA	57574796	57591424	.	-	.	gene_id "jcn_only_AA.620"; transcript_id "jcn_only_AA.620"; gene_name "CUFF.1975"; flanks "57574796^,57591424^"; structure "1-,2-"; splice_chain "57578355-,57591424-"; psi "0.007300";
chr19	juncbase	jcn_only_AA	44764091	44768481	.	-	.	gene_id "jcn_only_AA.621"; transcript_id "jcn_only_AA.621"; gene_name "CUFF.1975"; flanks "44764091^,44768481^"; structure "1-,2-"; splice_chain "44768467-,44768481-"; psi "0.707300";
chr11	juncbase	cassette	102953477	102937296	.	-	.	gene_id "cassette.563"; transcript_id "cassette.563"; gene_name "CUFF.1975"; flanks "102953477^,102937296-"; structure "0,1-2^"; splice_chain ",102950726-102950638^"; psi "0.518900";
chr10	juncbase	jcn_only_AD	73887840	73857208	.	-	.	gene_id "jcn_only_AD.760"; transcript_id "jcn_only_AD.760"; gene_name "CUFF.1975"; flanks "73887840-,73857208-"; structure "1^,2^"; splice_chain "73887840^,73862092^"; psi "0.637639";
chr10	juncbase	jcn_only_AD	73862608	73857208	.	-	.	gene_id "jcn_only_AD.761"; transcript_id "jcn_only_AD.761"; gene_name "CUFF.1975"; flanks "73862608-,73857208-"; structure "1^,2^"; splice_chain "73862608^,73862092^"; psi "0.193759";
chr11	juncbase	jcn_only_AA	829540	829986	.	-	.	gene_id "jcn_only_AA.622"; transcript_id "jcn_only_AA.622"; gene_name "CUFF.1975"; flanks "829540^,829986^"; structure "1-,2-"; splice_chain "829968-,829986-"; psi "0.654800";
chr2	juncbase	jcn_only_AD	27695117	27693962	.	-	.	gene_id "jcn_only_AD.762"; transcript_id "jcn_only_AD.762"; gene_name "CUFF.1975"; flanks "27695117-,27693962-"; structure "1^,2^"; splice_chain "27695117^,27694100^"; psi "0.949600";
chr17	juncbase	jcn_only_AA	5487613	5487279	.	-	.	gene_id "jcn_only_AA.623"; transcript_id "jcn_only_AA.623"; gene_name "CUFF.1975"; flanks "5487613^,5487279^"; structure "1-,2-"; splice_chain "5487423-,5487279-"; psi "0.037000";
chr3	juncbase	intron_retention	49462800	49462579	.	-	.	gene_id "intron_retention.736"; transcript_id "intron_retention.736"; gene_name "CUFF.1975"; flanks "49462800-,49462579^"; structure "0,1^2-"; splice_chain ",49462800^49462579-"; psi "0.723600";
chr8	juncbase	jcn_only_AD	99057171	99055003	.	-	.	gene_id "jcn_only_AD.763"; transcript_id "jcn_only_AD.763"; gene_name "CUFF.1975"; flanks "99057171-,99055003-"; structure "1^,2^"; splice_chain "99057171^,99057055^"; psi "0.847422";
chr8	juncbase	jcn_only_AD	99057575	99055003	.	-	.	gene_id "jcn_only_AD.764"; transcript_id "jcn_only_AD.764"; gene_name "CUFF.1975"; flanks "99057575-,99055003-"; structure "1^,2^"; splice_chain "99057575^,99057055^"; psi "0.619670";
chr10	juncbase	jcn_only_AA	73963185	73956747	.	-	.	gene_id "jcn_only_AA.624"; transcript_id "jcn_only_AA.624"; gene_name "CUFF.1975"; flanks "73963185^,73956747^"; structure "1-,2-"; splice_chain "73958423-,73956747-"; psi "0.806500";
chr10	juncbase	jcn_only_AD	124187832	124189140	.	-	.	gene_id "jcn_only_AD.765"; transcript_id "jcn_only_AD.765"; gene_name "CUFF.1975"; flanks "124187832-,124189140-"; structure "1^,2^"; splice_chain "124187832^,124187936^"; psi "0.435877";
chr10	juncbase	jcn_only_AD	124186547	124189140	.	-	.	gene_id "jcn_only_AD.766"; transcript_id "jcn_only_AD.766"; gene_name "CUFF.1975"; flanks "124186547-,124189140-"; structure "1^,2^"; splice_chain "124186547^,124187936^"; psi "0.500000";
chr8	juncbase	intron_retention	38006159	38005845	.	-	.	gene_id "intron_retention.737"; transcript_id "intron_retention.737"; gene_name "CUFF.1975"; flanks "38006159-,38005845^"; structure "0,1^2-"; splice_chain ",38006159^38005845-"; psi "0.208100";
chr17	juncbase	jcn_only_AD	79269222	79263608	.	-	.	gene_id "jcn_only_AD.767"; transcript_id "jcn_only_AD.767"; gene_name "CUFF.1975"; flanks "79269222-,79263608-"; structure "1^,2^"; splice_chain "79269222^,79268623^"; psi "0.153800";
chr16	juncbase	jcn_only_AA	586142	596817	.	-	.	gene_id "jcn_only_AA.625"; transcript_id "jcn_only_AA.625"; gene_name "CUFF.1975"; flanks "586142^,596817^"; structure "1-,2-"; splice_chain "587134-,596817-"; psi "0.428600";
chr15	juncbase	cassette	57213296	57383987	.	-	.	gene_id "cassette.564"; transcript_id "cassette.564"; gene_name "CUFF.1975"; flanks "57213296^,57383987-"; structure "0,1-2^"; splice_chain ",57355948-57356021^"; psi "0.592600";
chr2	juncbase	jcn_only_AD	177053147	177043826	.	-	.	gene_id "jcn_only_AD.768"; transcript_id "jcn_only_AD.768"; gene_name "CUFF.1975"; flanks "177053147-,177043826-"; structure "1^,2^"; splice_chain "177053147^,177052793^"; psi "0.644300";
chr22	juncbase	jcn_only_AD	30736198	30735023	.	-	.	gene_id "jcn_only_AD.769"; transcript_id "jcn_only_AD.769"; gene_name "CUFF.1975"; flanks "30736198-,30735023-"; structure "1^,2^"; splice_chain "30736198^,30735119^"; psi "0.165900";
chr16	juncbase	jcn_only_AD	70265340	70265061	.	-	.	gene_id "jcn_only_AD.770"; transcript_id "jcn_only_AD.770"; gene_name "CUFF.1975"; flanks "70265340-,70265061-"; structure "1^,2^"; splice_chain "70265340^,70265226^"; psi "0.936200";
chr2	juncbase	intron_retention	110922097	110920709	.	-	.	gene_id "intron_retention.738"; transcript_id "intron_retention.738"; gene_name "CUFF.1975"; flanks "110922097-,110920709^"; structure "0,1^2-"; splice_chain ",110922097^110920709-"; psi "0.666700";
chr14	juncbase	cassette	75130602	75127643	.	-	.	gene_id "cassette.565"; transcript_id "cassette.565"; gene_name "CUFF.1975"; flanks "75130602^,75127643-"; structure "0,1-2^"; splice_chain ",75130525-75130215^"; psi "0.929100";
chr22	juncbase	intron_retention	29684744	29688489	.	-	.	gene_id "intron_retention.739"; transcript_id "intron_retention.739"; gene_name "CUFF.1975"; flanks "29684744-,29688489^"; structure "0,1^2-"; splice_chain ",29684744^29688489-"; psi "0.846200";
chr19	juncbase	cassette	49335923	49318398	.	-	.	gene_id "cassette.566"; transcript_id "cassette.566"; gene_name "CUFF.1975"; flanks "49335923^,49318398-"; structure "0,1-2^"; splice_chain ",49335016-49334925^"; psi "0.746500";
chr5	juncbase	jcn_only_AD	141050892	141050195	.	-	.	gene_id "jcn_only_AD.771"; transcript_id "jcn_only_AD.771"; gene_name "CUFF.1975"; flanks "141050892-,141050195-"; structure "1^,2^"; splice_chain "141050892^,141050832^"; psi "0.162300";
chr2	juncbase	intron_retention	676574	675630	.	-	.	gene_id "intron_retention.740"; transcript_id "intron_retention.740"; gene_name "CUFF.1975"; flanks "676574-,675630^"; structure "0,1^2-"; splice_chain ",676574^675630-"; psi "0.469400";
chr4	juncbase	jcn_only_AD	6925838	6969031	.	-	.	gene_id "jcn_only_AD.772"; transcript_id "jcn_only_AD.772"; gene_name "CUFF.1975"; flanks "6925838-,6969031-"; structure "1^,2^"; splice_chain "6925838^,6956065^"; psi "0.851900";
chr10	juncbase	cassette	27065994	27059274	.	-	.	gene_id "cassette.567"; transcript_id "cassette.567"; gene_name "CUFF.1975"; flanks "27065994^,27059274-"; structure "0,1-2^"; splice_chain ",27060018-27060004^"; psi "0.850600";
chr10	juncbase	intron_retention	119798483	119774621	.	-	.	gene_id "intron_retention.741"; transcript_id "intron_retention.741"; gene_name "CUFF.1975"; flanks "119798483-,119774621^"; structure "0,1^2-"; splice_chain ",119798483^119774621-"; psi "0.666700";
chr3	juncbase	jcn_only_AD	73651505	73453546	.	-	.	gene_id "jcn_only_AD.773"; transcript_id "jcn_only_AD.773"; gene_name "CUFF.1975"; flanks "73651505-,73453546-"; structure "1^,2^"; splice_chain "73651505^,73610602^"; psi "0.293629";
chr3	juncbase	jcn_only_AD	73618302	73453546	.	-	.	gene_id "jcn_only_AD.774"; transcript_id "jcn_only_AD.774"; gene_name "CUFF.1975"; flanks "73618302-,73453546-"; structure "1^,2^"; splice_chain "73618302^,73610602^"; psi "0.683623";
chr19	juncbase	intron_retention	44771114	44777458	.	-	.	gene_id "intron_retention.742"; transcript_id "intron_retention.742"; gene_name "CUFF.1975"; flanks "44771114-,44777458^"; structure "0,1^2-"; splice_chain ",44771114^44777458-"; psi "0.367300";
chr7	juncbase	jcn_only_AA	86542257	86541487	.	-	.	gene_id "jcn_only_AA.626"; transcript_id "jcn_only_AA.626"; gene_name "CUFF.1975"; flanks "86542257^,86541487^"; structure "1-,2-"; splice_chain "86541561-,86541487-"; psi "0.069600";
chr14	juncbase	intron_retention	61518853	61519067	.	-	.	gene_id "intron_retention.743"; transcript_id "intron_retention.743"; gene_name "CUFF.1975"; flanks "61518853-,61519067^"; structure "0,1^2-"; splice_chain ",61518853^61519067-"; psi "0.539400";
chr12	juncbase	jcn_only_AD	120287978	120158390	.	-	.	gene_id "jcn_only_AD.775"; transcript_id "jcn_only_AD.775"; gene_name "CUFF.1975"; flanks "120287978-,120158390-"; structure "1^,2^"; splice_chain "120287978^,120159114^"; psi "0.591500";
chr16	juncbase	jcn_only_AD	89793733	89795643	.	-	.	gene_id "jcn_only_AD.776"; transcript_id "jcn_only_AD.776"; gene_name "CUFF.1975"; flanks "89793733-,89795643-"; structure "1^,2^"; splice_chain "89793733^,89793765^"; psi "0.593900";
chr7	juncbase	jcn_only_AD	150783147	150813880	.	-	.	gene_id "jcn_only_AD.777"; transcript_id "jcn_only_AD.777"; gene_name "CUFF.1975"; flanks "150783147-,150813880-"; structure "1^,2^"; splice_chain "150783147^,150784159^"; psi "0.221777";
chr7	juncbase	jcn_only_AD	150783096	150813880	.	-	.	gene_id "jcn_only_AD.778"; transcript_id "jcn_only_AD.778"; gene_name "CUFF.1975"; flanks "150783096-,150813880-"; structure "1^,2^"; splice_chain "150783096^,150784159^"; psi "0.140203";
chr16	juncbase	jcn_only_AD	23505624	23504779	.	-	.	gene_id "jcn_only_AD.779"; transcript_id "jcn_only_AD.779"; gene_name "CUFF.1975"; flanks "23505624-,23504779-"; structure "1^,2^"; splice_chain "23505624^,23505620^"; psi "0.647400";
chr8	juncbase	jcn_only_AD	10683662	10584176	.	-	.	gene_id "jcn_only_AD.780"; transcript_id "jcn_only_AD.780"; gene_name "CUFF.1975"; flanks "10683662-,10584176-"; structure "1^,2^"; splice_chain "10683662^,10587706^"; psi "0.080000";
chr11	juncbase	intron_retention	830713	830866	.	-	.	gene_id "intron_retention.744"; transcript_id "intron_retention.744"; gene_name "CUFF.1975"; flanks "830713-,830866^"; structure "0,1^2-"; splice_chain ",830713^830866-"; psi "0.531600";
chr18	juncbase	cassette	77478016	77496355	.	-	.	gene_id "cassette.568"; transcript_id "cassette.568"; gene_name "CUFF.1975"; flanks "77478016^,77496355-"; structure "0,1-2^"; splice_chain ",77488907-77489069^"; psi "0.833300";
chr7	juncbase	jcn_only_AA	86571334	86569431	.	-	.	gene_id "jcn_only_AA.627"; transcript_id "jcn_only_AA.627"; gene_name "CUFF.1975"; flanks "86571334^,86569431^"; structure "1-,2-"; splice_chain "86570701-,86569431-"; psi "0.619000";
chr7	juncbase	jcn_only_AA	73108380	73111935	.	-	.	gene_id "jcn_only_AA.628"; transcript_id "jcn_only_AA.628"; gene_name "CUFF.1975"; flanks "73108380^,73111935^"; structure "1-,2-"; splice_chain "73111796-,73111935-"; psi "0.928547";
chr7	juncbase	jcn_only_AA	102553533	102462650	.	-	.	gene_id "jcn_only_AA.629"; transcript_id "jcn_only_AA.629"; gene_name "CUFF.1975"; flanks "102553533^,102462650^"; structure "1-,2-"; splice_chain "102524759-,102462650-"; psi "0.311700";
chr8	juncbase	intron_retention	81083660	80976828	.	-	.	gene_id "intron_retention.745"; transcript_id "intron_retention.745"; gene_name "CUFF.1975"; flanks "81083660-,80976828^"; structure "0,1^2-"; splice_chain ",81083660^80976828-"; psi "0.443000";
chr17	juncbase	intron_retention	56082284	56081079	.	-	.	gene_id "intron_retention.746"; transcript_id "intron_retention.746"; gene_name "CUFF.1975"; flanks "56082284-,56081079^"; structure "0,1^2-"; splice_chain ",56082284^56081079-"; psi "0.762400";
chr22	juncbase	jcn_only_AA	29668420	29674120	.	-	.	gene_id "jcn_only_AA.630"; transcript_id "jcn_only_AA.630"; gene_name "CUFF.1975"; flanks "29668420^,29674120^"; structure "1-,2-"; splice_chain "29669730-,29674120-"; psi "0.152518";
chr12	juncbase	intron_retention	50357439	50357875	.	-	.	gene_id "intron_retention.747"; transcript_id "intron_retention.747"; gene_name "CUFF.1975"; flanks "50357439-,50357875^"; structure "0,1^2-"; splice_chain ",50357439^50357875-"; psi "0.226100";
chr17	juncbase	jcn_only_AD	61567389	61571283	.	-	.	gene_id "jcn_only_AD.781"; transcript_id "jcn_only_AD.781"; gene_name "CUFF.1975"; flanks "61567389-,61571283-"; structure "1^,2^"; splice_chain "61567389^,61568729^"; psi "0.500693";
chrX	juncbase	intron_retention	153609162	153609242	.	-	.	gene_id "intron_retention.748"; transcript_id "intron_retention.748"; gene_name "CUFF.1975"; flanks "153609162-,153609242^"; structure "0,1^2-"; splice_chain ",153609162^153609242-"; psi "0.009200";
chr10	juncbase	jcn_only_AD	78649209	78647273	.	-	.	gene_id "jcn_only_AD.782"; transcript_id "jcn_only_AD.782"; gene_name "CUFF.1975"; flanks "78649209-,78647273-"; structure "1^,2^"; splice_chain "78649209^,78647553^"; psi "0.983800";
chr3	juncbase	intron_retention	49462800	49462486	.	-	.	gene_id "intron_retention.749"; transcript_id "intron_retention.749"; gene_name "CUFF.1975"; flanks "49462800-,49462486^"; structure "0,1^2-"; splice_chain ",49462800^49462486-"; psi "0.126500";
chr6	juncbase	jcn_only_AA	31939706	31938924	.	-	.	gene_id "jcn_only_AA.631"; transcript_id "jcn_only_AA.631"; gene_name "CUFF.1975"; flanks "31939706^,31938924^"; structure "1-,2-"; splice_chain "31939358-,31938924-"; psi "0.571661";
chr18	juncbase	jcn_only_AA	12014372	12028042	.	-	.	gene_id "jcn_only_AA.632"; transcript_id "jcn_only_AA.632"; gene_name "CUFF.1975"; flanks "12014372^,12028042^"; structure "1-,2-"; splice_chain "12021701-,12028042-"; psi "0.917151";
chr4	juncbase	cassette	56473465	56466742	.	-	.	gene_id "cassette.569"; transcript_id "cassette.569"; gene_name "CUFF.1975"; flanks "56473465^,56466742-"; structure "0,1-2^"; splice_chain ",56471516-56471442^"; psi "0.350100";
chr4	juncbase	cassette	56473604	56466742	.	-	.	gene_id "cassette.570"; transcript_id "cassette.570"; gene_name "CUFF.1975"; flanks "56473604^,56466742-"; structure "0,1-2^"; splice_chain ",56471516-56471442^"; psi "0.350100";
chr22	juncbase	intron_retention	30736198	30735023	.	-	.	gene_id "intron_retention.750"; transcript_id "intron_retention.750"; gene_name "CUFF.1975"; flanks "30736198-,30735023^"; structure "0,1^2-"; splice_chain ",30736198^30735023-"; psi "0.379300";
chr5	juncbase	cassette	177636433	177637554	.	-	.	gene_id "cassette.571"; transcript_id "cassette.571"; gene_name "CUFF.1975"; flanks "177636433^,177637554-"; structure "0,1-2^"; splice_chain ",177637133-177637273^"; psi "0.903800";
chr5	juncbase	cassette	177636448	177637554	.	-	.	gene_id "cassette.572"; transcript_id "cassette.572"; gene_name "CUFF.1975"; flanks "177636448^,177637554-"; structure "0,1-2^"; splice_chain ",177637133-177637273^"; psi "0.903800";
chr2	juncbase	intron_retention	219231823	219232153	.	-	.	gene_id "intron_retention.751"; transcript_id "intron_retention.751"; gene_name "CUFF.1975"; flanks "219231823-,219232153^"; structure "0,1^2-"; splice_chain ",219231823^219232153-"; psi "0.237300";
chr2	juncbase	jcn_only_AA	4021135	4009393	.	-	.	gene_id "jcn_only_AA.633"; transcript_id "jcn_only_AA.633"; gene_name "CUFF.1975"; flanks "4021135^,4009393^"; structure "1-,2-"; splice_chain "4015878-,4009393-"; psi "0.623075";
chr2	juncbase	jcn_only_AA	4021135	4009484	.	-	.	gene_id "jcn_only_AA.634"; transcript_id "jcn_only_AA.634"; gene_name "CUFF.1975"; flanks "4021135^,4009484^"; structure "1-,2-"; splice_chain "4015878-,4009484-"; psi "0.544433";
chr12	juncbase	jcn_only_AA	26205929	26208212	.	-	.	gene_id "jcn_only_AA.635"; transcript_id "jcn_only_AA.635"; gene_name "CUFF.1975"; flanks "26205929^,26208212^"; structure "1-,2-"; splice_chain "26208169-,26208212-"; psi "0.699400";
chr3	juncbase	intron_retention	19992553	20017093	.	-	.	gene_id "intron_retention.752"; transcript_id "intron_retention.752"; gene_name "CUFF.1975"; flanks "19992553-,20017093^"; structure "0,1^2-"; splice_chain ",19992553^20017093-"; psi "0.486000";
chr5	juncbase	cassette	37314300	37309369	.	-	.	gene_id "cassette.573"; transcript_id "cassette.573"; gene_name "CUFF.1975"; flanks "37314300^,37309369-"; structure "0,1-2^"; splice_chain ",37310845-37310654^"; psi "0.228300";
chr5	juncbase	intron_retention	149786715	149786523	.	-	.	gene_id "intron_retention.753"; transcript_id "intron_retention.753"; gene_name "CUFF.1975"; flanks "149786715-,149786523^"; structure "0,1^2-"; splice_chain ",149786715^149786523-"; psi "0.042900";
chr4	juncbase	intron_retention	2933552	2933192	.	-	.	gene_id "intron_retention.754"; transcript_id "intron_retention.754"; gene_name "CUFF.1975"; flanks "2933552-,2933192^"; structure "0,1^2-"; splice_chain ",2933552^2933192-"; psi "0.580100";
chr7	juncbase	intron_retention	44250530	44250622	.	-	.	gene_id "intron_retention.755"; transcript_id "intron_retention.755"; gene_name "CUFF.1975"; flanks "44250530-,44250622^"; structure "0,1^2-"; splice_chain ",44250530^44250622-"; psi "0.369200";
chr8	juncbase	intron_retention	99057575	99057316	.	-	.	gene_id "intron_retention.756"; transcript_id "intron_retention.756"; gene_name "CUFF.1975"; flanks "99057575-,99057316^"; structure "0,1^2-"; splice_chain ",99057575^99057316-"; psi "0.040300";
chr20	juncbase	intron_retention	33589888	33589980	.	-	.	gene_id "intron_retention.757"; transcript_id "intron_retention.757"; gene_name "CUFF.1975"; flanks "33589888-,33589980^"; structure "0,1^2-"; splice_chain ",33589888^33589980-"; psi "0.144600";
chr19	juncbase	jcn_only_AA	54657577	54658996	.	-	.	gene_id "jcn_only_AA.636"; transcript_id "jcn_only_AA.636"; gene_name "CUFF.1975"; flanks "54657577^,54658996^"; structure "1-,2-"; splice_chain "54657681-,54658996-"; psi "0.517194";
chr19	juncbase	jcn_only_AA	54657577	54659047	.	-	.	gene_id "jcn_only_AA.637"; transcript_id "jcn_only_AA.637"; gene_name "CUFF.1975"; flanks "54657577^,54659047^"; structure "1-,2-"; splice_chain "54657681-,54659047-"; psi "0.881325";
chr6	juncbase	jcn_only_AD	128841404	128718833	.	-	.	gene_id "jcn_only_AD.783"; transcript_id "jcn_only_AD.783"; gene_name "CUFF.1975"; flanks "128841404-,128718833-"; structure "1^,2^"; splice_chain "128841404^,128730439^"; psi "0.869067";
chr6	juncbase	jcn_only_AD	128812877	128718833	.	-	.	gene_id "jcn_only_AD.784"; transcript_id "jcn_only_AD.784"; gene_name "CUFF.1975"; flanks "128812877-,128718833-"; structure "1^,2^"; splice_chain "128812877^,128730439^"; psi "0.743652";
chr7	juncbase	cassette	37488278	37382367	.	-	.	gene_id "cassette.574"; transcript_id "cassette.574"; gene_name "CUFF.1975"; flanks "37488278^,37382367-"; structure "0,1-2^"; splice_chain ",37433520-37433425^"; psi "0.693700";
chr7	juncbase	cassette	37488463	37382367	.	-	.	gene_id "cassette.575"; transcript_id "cassette.575"; gene_name "CUFF.1975"; flanks "37488463^,37382367-"; structure "0,1-2^"; splice_chain ",37433520-37433425^"; psi "0.693700";
chr4	juncbase	cassette	3954838	3949947	.	-	.	gene_id "cassette.576"; transcript_id "cassette.576"; gene_name "CUFF.1975"; flanks "3954838^,3949947-"; structure "0,1-2^"; splice_chain ",3952946-3952866^"; psi "0.842100";
chr20	juncbase	jcn_only_AA	33589888	33589980	.	-	.	gene_id "jcn_only_AA.638"; transcript_id "jcn_only_AA.638"; gene_name "CUFF.1975"; flanks "33589888^,33589980^"; structure "1-,2-"; splice_chain "33589962-,33589980-"; psi "0.787900";
chr2	juncbase	jcn_only_AA	109092306	109098166	.	-	.	gene_id "jcn_only_AA.639"; transcript_id "jcn_only_AA.639"; gene_name "CUFF.1975"; flanks "109092306^,109098166^"; structure "1-,2-"; splice_chain "109098153-,109098166-"; psi "0.956800";
chr4	juncbase	jcn_only_AD	57302094	57302428	.	-	.	gene_id "jcn_only_AD.785"; transcript_id "jcn_only_AD.785"; gene_name "CUFF.1975"; flanks "57302094-,57302428-"; structure "1^,2^"; splice_chain "57302094^,57302141^"; psi "0.506200";
chr14	juncbase	jcn_only_AA	75158744	75152363	.	-	.	gene_id "jcn_only_AA.640"; transcript_id "jcn_only_AA.640"; gene_name "CUFF.1975"; flanks "75158744^,75152363^"; structure "1-,2-"; splice_chain "75157853-,75152363-"; psi "0.267500";
chr1	juncbase	intron_retention	213188568	213186760	.	-	.	gene_id "intron_retention.758"; transcript_id "intron_retention.758"; gene_name "CUFF.1975"; flanks "213188568-,213186760^"; structure "0,1^2-"; splice_chain ",213188568^213186760-"; psi "0.176500";
chr11	juncbase	intron_retention	6632895	6632683	.	-	.	gene_id "intron_retention.759"; transcript_id "intron_retention.759"; gene_name "CUFF.1975"; flanks "6632895-,6632683^"; structure "0,1^2-"; splice_chain ",6632895^6632683-"; psi "0.333300";
chr14	juncbase	cassette	61509930	61512064	.	-	.	gene_id "cassette.577"; transcript_id "cassette.577"; gene_name "CUFF.1975"; flanks "61509930^,61512064-"; structure "0,1-2^"; splice_chain ",61510168-61510221^"; psi "0.700500";
chr5	juncbase	intron_retention	141041610	141041356	.	-	.	gene_id "intron_retention.760"; transcript_id "intron_retention.760"; gene_name "CUFF.1975"; flanks "141041610-,141041356^"; structure "0,1^2-"; splice_chain ",141041610^141041356-"; psi "0.067600";
chr8	juncbase	jcn_only_AA	144356972	144358173	.	-	.	gene_id "jcn_only_AA.641"; transcript_id "jcn_only_AA.641"; gene_name "CUFF.1975"; flanks "144356972^,144358173^"; structure "1-,2-"; splice_chain "144358067-,144358173-"; psi "0.082861";
chr16	juncbase	cassette	31383105	31383918	.	-	.	gene_id "cassette.578"; transcript_id "cassette.578"; gene_name "CUFF.1975"; flanks "31383105^,31383918-"; structure "0,1-2^"; splice_chain ",31383699-31383830^"; psi "0.809500";
chr4	juncbase	intron_retention	37848732	37848823	.	-	.	gene_id "intron_retention.761"; transcript_id "intron_retention.761"; gene_name "CUFF.1975"; flanks "37848732-,37848823^"; structure "0,1^2-"; splice_chain ",37848732^37848823-"; psi "0.261000";
chr15	juncbase	jcn_only_AA	83357488	83355771	.	-	.	gene_id "jcn_only_AA.642"; transcript_id "jcn_only_AA.642"; gene_name "CUFF.1975"; flanks "83357488^,83355771^"; structure "1-,2-"; splice_chain "83357250-,83355771-"; psi "0.814173";
chr15	juncbase	jcn_only_AA	83357488	83350332	.	-	.	gene_id "jcn_only_AA.643"; transcript_id "jcn_only_AA.643"; gene_name "CUFF.1975"; flanks "83357488^,83350332^"; structure "1-,2-"; splice_chain "83357250-,83350332-"; psi "0.987557";
chr17	juncbase	jcn_only_AD	15586350	15584267	.	-	.	gene_id "jcn_only_AD.786"; transcript_id "jcn_only_AD.786"; gene_name "CUFF.1975"; flanks "15586350-,15584267-"; structure "1^,2^"; splice_chain "15586350^,15586168^"; psi "0.412262";
chr17	juncbase	jcn_only_AD	15586175	15584267	.	-	.	gene_id "jcn_only_AD.787"; transcript_id "jcn_only_AD.787"; gene_name "CUFF.1975"; flanks "15586175-,15584267-"; structure "1^,2^"; splice_chain "15586175^,15586168^"; psi "0.107756";
chr9	juncbase	cassette	104249231	104239451	.	-	.	gene_id "cassette.579"; transcript_id "cassette.579"; gene_name "CUFF.1975"; flanks "104249231^,104239451-"; structure "0,1-2^"; splice_chain ",104243007-104242953^"; psi "0.500000";
chr2	juncbase	intron_retention	219461021	219461058	.	-	.	gene_id "intron_retention.762"; transcript_id "intron_retention.762"; gene_name "CUFF.1975"; flanks "219461021-,219461058^"; structure "0,1^2-"; splice_chain ",219461021^219461058-"; psi "0.239300";
chr3	juncbase	cassette	119255984	119246688	.	-	.	gene_id "cassette.580"; transcript_id "cassette.580"; gene_name "CUFF.1975"; flanks "119255984^,119246688-"; structure "0,1-2^"; splice_chain ",119248784-119248689^"; psi "0.494400";
chr19	juncbase	jcn_only_AA	14854232	14847056	.	-	.	gene_id "jcn_only_AA.644"; transcript_id "jcn_only_AA.644"; gene_name "CUFF.1975"; flanks "14854232^,14847056^"; structure "1-,2-"; splice_chain "14852898-,14847056-"; psi "0.812300";
chr11	juncbase	intron_retention	119056219	119056631	.	-	.	gene_id "intron_retention.763"; transcript_id "intron_retention.763"; gene_name "CUFF.1975"; flanks "119056219-,119056631^"; structure "0,1^2-"; splice_chain ",119056219^119056631-"; psi "0.265300";
chr7	juncbase	jcn_only_AA	30791920	30793350	.	-	.	gene_id "jcn_only_AA.645"; transcript_id "jcn_only_AA.645"; gene_name "CUFF.1975"; flanks "30791920^,30793350^"; structure "1-,2-"; splice_chain "30793347-,30793350-"; psi "0.622200";
chr11	juncbase	intron_retention	118926462	118926283	.	-	.	gene_id "intron_retention.764"; transcript_id "intron_retention.764"; gene_name "CUFF.1975"; flanks "118926462-,118926283^"; structure "0,1^2-"; splice_chain ",118926462^118926283-"; psi "0.007300";
chr17	juncbase	intron_retention	79994260	79994198	.	-	.	gene_id "intron_retention.765"; transcript_id "intron_retention.765"; gene_name "CUFF.1975"; flanks "79994260-,79994198^"; structure "0,1^2-"; splice_chain ",79994260^79994198-"; psi "0.824400";
chr15	juncbase	cassette	55486494	55485031	.	-	.	gene_id "cassette.581"; transcript_id "cassette.581"; gene_name "CUFF.1975"; flanks "55486494^,55485031-"; structure "0,1-2^"; splice_chain ",55486381-55486351^"; psi "0.631600";
chr2	juncbase	jcn_only_AD	1079341	1204789	.	-	.	gene_id "jcn_only_AD.788"; transcript_id "jcn_only_AD.788"; gene_name "CUFF.1975"; flanks "1079341-,1204789-"; structure "1^,2^"; splice_chain "1079341^,1168869^"; psi "0.139900";
chr2	juncbase	jcn_only_AD	86847453	86839397	.	-	.	gene_id "jcn_only_AD.789"; transcript_id "jcn_only_AD.789"; gene_name "CUFF.1975"; flanks "86847453-,86839397-"; structure "1^,2^"; splice_chain "86847453^,86842278^"; psi "0.660700";
chr3	juncbase	cassette	155520321	155485458	.	-	.	gene_id "cassette.582"; transcript_id "cassette.582"; gene_name "CUFF.1975"; flanks "155520321^,155485458-"; structure "0,1-2^"; splice_chain ",155493637-155493490^"; psi "0.438000";
chr19	juncbase	cassette	51487107	51485170	.	-	.	gene_id "cassette.583"; transcript_id "cassette.583"; gene_name "CUFF.1975"; flanks "51487107^,51485170-"; structure "0,1-2^"; splice_chain ",51485713-51485583^"; psi "0.651000";
chr15	juncbase	cassette	24811947	24814930	.	-	.	gene_id "cassette.584"; transcript_id "cassette.584"; gene_name "CUFF.1975"; flanks "24811947^,24814930-"; structure "0,1-2^"; splice_chain ",24813678-24813710^"; psi "0.409100";
chr9	juncbase	jcn_only_AD	34991413	34993197	.	-	.	gene_id "jcn_only_AD.790"; transcript_id "jcn_only_AD.790"; gene_name "CUFF.1975"; flanks "34991413-,34993197-"; structure "1^,2^"; splice_chain "34991413^,34992983^"; psi "0.770500";
chr19	juncbase	jcn_only_AD	32851524	32873373	.	-	.	gene_id "jcn_only_AD.791"; transcript_id "jcn_only_AD.791"; gene_name "CUFF.1975"; flanks "32851524-,32873373-"; structure "1^,2^"; splice_chain "32851524^,32871526^"; psi "0.774200";
chr11	juncbase	intron_retention	63670604	63671570	.	-	.	gene_id "intron_retention.766"; transcript_id "intron_retention.766"; gene_name "CUFF.1975"; flanks "63670604-,63671570^"; structure "0,1^2-"; splice_chain ",63670604^63671570-"; psi "0.694900";
chr3	juncbase	jcn_only_AA	33453073	33451079	.	-	.	gene_id "jcn_only_AA.646"; transcript_id "jcn_only_AA.646"; gene_name "CUFF.1975"; flanks "33453073^,33451079^"; structure "1-,2-"; splice_chain "33451093-,33451079-"; psi "0.243700";
chr2	juncbase	jcn_only_AA	33572577	33585670	.	-	.	gene_id "jcn_only_AA.647"; transcript_id "jcn_only_AA.647"; gene_name "CUFF.1975"; flanks "33572577^,33585670^"; structure "1-,2-"; splice_chain "33585664-,33585670-"; psi "0.198000";
chr10	juncbase	cassette	412215	410522	.	-	.	gene_id "cassette.585"; transcript_id "cassette.585"; gene_name "CUFF.1975"; flanks "412215^,410522-"; structure "0,1-2^"; splice_chain ",410961-410755^"; psi "0.555600";
chr2	juncbase	intron_retention	242594062	242606060	.	-	.	gene_id "intron_retention.767"; transcript_id "intron_retention.767"; gene_name "CUFF.1975"; flanks "242594062-,242606060^"; structure "0,1^2-"; splice_chain ",242594062^242606060-"; psi "0.917300";
chr16	juncbase	intron_retention	21976826	21979949	.	-	.	gene_id "intron_retention.768"; transcript_id "intron_retention.768"; gene_name "CUFF.1975"; flanks "21976826-,21979949^"; structure "0,1^2-"; splice_chain ",21976826^21979949-"; psi "0.071400";
chr9	juncbase	cassette	125033354	125047448	.	-	.	gene_id "cassette.586"; transcript_id "cassette.586"; gene_name "CUFF.1975"; flanks "125033354^,125047448-"; structure "0,1-2^"; splice_chain ",125042722-125042877^"; psi "0.976900";
chr16	juncbase	jcn_only_AD	21712348	21716490	.	-	.	gene_id "jcn_only_AD.792"; transcript_id "jcn_only_AD.792"; gene_name "CUFF.1975"; flanks "21712348-,21716490-"; structure "1^,2^"; splice_chain "21712348^,21716358^"; psi "0.950790";
chr16	juncbase	jcn_only_AD	21712390	21716490	.	-	.	gene_id "jcn_only_AD.793"; transcript_id "jcn_only_AD.793"; gene_name "CUFF.1975"; flanks "21712390-,21716490-"; structure "1^,2^"; splice_chain "21712390^,21716358^"; psi "0.250000";
chrX	juncbase	jcn_only_AA	119378619	119312411	.	-	.	gene_id "jcn_only_AA.648"; transcript_id "jcn_only_AA.648"; gene_name "CUFF.1975"; flanks "119378619^,119312411^"; structure "1-,2-"; splice_chain "119374208-,119312411-"; psi "0.781818";
chrX	juncbase	jcn_only_AA	119378619	119355497	.	-	.	gene_id "jcn_only_AA.649"; transcript_id "jcn_only_AA.649"; gene_name "CUFF.1975"; flanks "119378619^,119355497^"; structure "1-,2-"; splice_chain "119374208-,119355497-"; psi "0.538462";
chrX	juncbase	jcn_only_AA	119378619	119271099	.	-	.	gene_id "jcn_only_AA.650"; transcript_id "jcn_only_AA.650"; gene_name "CUFF.1975"; flanks "119378619^,119271099^"; structure "1-,2-"; splice_chain "119374208-,119271099-"; psi "0.600000";
chr11	juncbase	intron_retention	828963	829360	.	-	.	gene_id "intron_retention.769"; transcript_id "intron_retention.769"; gene_name "CUFF.1975"; flanks "828963-,829360^"; structure "0,1^2-"; splice_chain ",828963^829360-"; psi "0.489000";
chr18	juncbase	cassette	44486190	44483596	.	-	.	gene_id "cassette.587"; transcript_id "cassette.587"; gene_name "CUFF.1975"; flanks "44486190^,44483596-"; structure "0,1-2^"; splice_chain ",44484169-44484065^"; psi "0.822000";
chr7	juncbase	jcn_only_AA	156629507	156556489	.	-	.	gene_id "jcn_only_AA.651"; transcript_id "jcn_only_AA.651"; gene_name "CUFF.1975"; flanks "156629507^,156556489^"; structure "1-,2-"; splice_chain "156627289-,156556489-"; psi "0.971074";
chr7	juncbase	jcn_only_AA	156629507	156627269	.	-	.	gene_id "jcn_only_AA.652"; transcript_id "jcn_only_AA.652"; gene_name "CUFF.1975"; flanks "156629507^,156627269^"; structure "1-,2-"; splice_chain "156627289-,156627269-"; psi "0.948339";
chr7	juncbase	jcn_only_AA	156629507	156626486	.	-	.	gene_id "jcn_only_AA.653"; transcript_id "jcn_only_AA.653"; gene_name "CUFF.1975"; flanks "156629507^,156626486^"; structure "1-,2-"; splice_chain "156627289-,156626486-"; psi "0.998490";
chr3	juncbase	jcn_only_AD	71803795	71777774	.	-	.	gene_id "jcn_only_AD.794"; transcript_id "jcn_only_AD.794"; gene_name "CUFF.1975"; flanks "71803795-,71777774-"; structure "1^,2^"; splice_chain "71803795^,71803366^"; psi "0.625000";
chr14	juncbase	jcn_only_AD	81902665	81893556	.	-	.	gene_id "jcn_only_AD.795"; transcript_id "jcn_only_AD.795"; gene_name "CUFF.1975"; flanks "81902665-,81893556-"; structure "1^,2^"; splice_chain "81902665^,81893645^"; psi "0.911805";
chr14	juncbase	jcn_only_AD	81902432	81893556	.	-	.	gene_id "jcn_only_AD.796"; transcript_id "jcn_only_AD.796"; gene_name "CUFF.1975"; flanks "81902432-,81893556-"; structure "1^,2^"; splice_chain "81902432^,81893645^"; psi "0.952671";
chrX	juncbase	jcn_only_AA	142113878	142121814	.	-	.	gene_id "jcn_only_AA.654"; transcript_id "jcn_only_AA.654"; gene_name "CUFF.1975"; flanks "142113878^,142121814^"; structure "1-,2-"; splice_chain "142121811-,142121814-"; psi "0.232500";
chr15	juncbase	jcn_only_AD	74754368	74758377	.	-	.	gene_id "jcn_only_AD.797"; transcript_id "jcn_only_AD.797"; gene_name "CUFF.1975"; flanks "74754368-,74758377-"; structure "1^,2^"; splice_chain "74754368^,74754439^"; psi "0.729282";
chr15	juncbase	jcn_only_AD	74754372	74758377	.	-	.	gene_id "jcn_only_AD.798"; transcript_id "jcn_only_AD.798"; gene_name "CUFF.1975"; flanks "74754372-,74758377-"; structure "1^,2^"; splice_chain "74754372^,74754439^"; psi "0.936937";
chr5	juncbase	cassette	64909925	64907708	.	-	.	gene_id "cassette.588"; transcript_id "cassette.588"; gene_name "CUFF.1975"; flanks "64909925^,64907708-"; structure "0,1-2^"; splice_chain ",64909682-64909554^"; psi "0.478500";
chr1	juncbase	cassette	106161481	106148711	.	-	.	gene_id "cassette.589"; transcript_id "cassette.589"; gene_name "CUFF.1975"; flanks "106161481^,106148711-"; structure "0,1-2^"; splice_chain ",106155566-106155522^"; psi "0.957800";
chr14	juncbase	cassette	24567887	24568767	.	-	.	gene_id "cassette.590"; transcript_id "cassette.590"; gene_name "CUFF.1975"; flanks "24567887^,24568767-"; structure "0,1-2^"; splice_chain ",24568258-24568445^"; psi "0.963500";
chr7	juncbase	cassette	44247797	44251846	.	-	.	gene_id "cassette.591"; transcript_id "cassette.591"; gene_name "CUFF.1975"; flanks "44247797^,44251846-"; structure "0,1-2^"; splice_chain ",44250622-44250723^"; psi "0.563800";
chr17	juncbase	cassette	46988242	46993438	.	-	.	gene_id "cassette.592"; transcript_id "cassette.592"; gene_name "CUFF.1975"; flanks "46988242^,46993438-"; structure "0,1-2^"; splice_chain ",46990196-46990383^"; psi "0.600800";
chr17	juncbase	intron_retention	79479490	79479386	.	-	.	gene_id "intron_retention.770"; transcript_id "intron_retention.770"; gene_name "CUFF.1975"; flanks "79479490-,79479386^"; structure "0,1^2-"; splice_chain ",79479490^79479386-"; psi "0.187500";
chr4	juncbase	jcn_only_AA	69083624	69071815	.	-	.	gene_id "jcn_only_AA.655"; transcript_id "jcn_only_AA.655"; gene_name "CUFF.1975"; flanks "69083624^,69071815^"; structure "1-,2-"; splice_chain "69078195-,69071815-"; psi "0.802300";
chr10	juncbase	jcn_only_AA	18280232	18282113	.	-	.	gene_id "jcn_only_AA.656"; transcript_id "jcn_only_AA.656"; gene_name "CUFF.1975"; flanks "18280232^,18282113^"; structure "1-,2-"; splice_chain "18282110-,18282113-"; psi "0.237300";
chrX	juncbase	jcn_only_AA	114536688	114540770	.	-	.	gene_id "jcn_only_AA.657"; transcript_id "jcn_only_AA.657"; gene_name "CUFF.1975"; flanks "114536688^,114540770^"; structure "1-,2-"; splice_chain "114537865-,114540770-"; psi "0.636400";
chr9	juncbase	cassette	105774379	105780607	.	-	.	gene_id "cassette.593"; transcript_id "cassette.593"; gene_name "CUFF.1975"; flanks "105774379^,105780607-"; structure "0,1-2^"; splice_chain ",105779170-105779243^"; psi "0.100000";
chr16	juncbase	jcn_only_AD	2201610	2201696	.	-	.	gene_id "jcn_only_AD.799"; transcript_id "jcn_only_AD.799"; gene_name "CUFF.1975"; flanks "2201610-,2201696-"; structure "1^,2^"; splice_chain "2201610^,2201611^"; psi "0.003400";
chr11	juncbase	intron_retention	8502081	8496613	.	-	.	gene_id "intron_retention.771"; transcript_id "intron_retention.771"; gene_name "CUFF.1975"; flanks "8502081-,8496613^"; structure "0,1^2-"; splice_chain ",8502081^8496613-"; psi "0.341500";
chr1	juncbase	cassette	222835674	222837340	.	-	.	gene_id "cassette.594"; transcript_id "cassette.594"; gene_name "CUFF.1975"; flanks "222835674^,222837340-"; structure "0,1-2^"; splice_chain ",222836230-222836373^"; psi "0.947100";
chr2	juncbase	jcn_only_AD	73215387	73198814	.	-	.	gene_id "jcn_only_AD.800"; transcript_id "jcn_only_AD.800"; gene_name "CUFF.1975"; flanks "73215387-,73198814-"; structure "1^,2^"; splice_chain "73215387^,73208138^"; psi "0.805700";
chr12	juncbase	intron_retention	56708914	56708750	.	-	.	gene_id "intron_retention.772"; transcript_id "intron_retention.772"; gene_name "CUFF.1975"; flanks "56708914-,56708750^"; structure "0,1^2-"; splice_chain ",56708914^56708750-"; psi "0.057300";
chr15	juncbase	jcn_only_AA	75766030	75762340	.	-	.	gene_id "jcn_only_AA.658"; transcript_id "jcn_only_AA.658"; gene_name "CUFF.1975"; flanks "75766030^,75762340^"; structure "1-,2-"; splice_chain "75763171-,75762340-"; psi "0.762400";
chr16	juncbase	jcn_only_AD	3115495	3115782	.	-	.	gene_id "jcn_only_AD.801"; transcript_id "jcn_only_AD.801"; gene_name "CUFF.1975"; flanks "3115495-,3115782-"; structure "1^,2^"; splice_chain "3115495^,3115711^"; psi "0.953566";
chr16	juncbase	jcn_only_AD	3115688	3115782	.	-	.	gene_id "jcn_only_AD.802"; transcript_id "jcn_only_AD.802"; gene_name "CUFF.1975"; flanks "3115688-,3115782-"; structure "1^,2^"; splice_chain "3115688^,3115711^"; psi "0.454545";
chr3	juncbase	jcn_only_AA	57570111	57569759	.	-	.	gene_id "jcn_only_AA.659"; transcript_id "jcn_only_AA.659"; gene_name "CUFF.1975"; flanks "57570111^,57569759^"; structure "1-,2-"; splice_chain "57569787-,57569759-"; psi "0.938598";
chr3	juncbase	jcn_only_AA	57570111	57569734	.	-	.	gene_id "jcn_only_AA.660"; transcript_id "jcn_only_AA.660"; gene_name "CUFF.1975"; flanks "57570111^,57569734^"; structure "1-,2-"; splice_chain "57569787-,57569734-"; psi "0.787866";
chr10	juncbase	jcn_only_AA	60029064	60036877	.	-	.	gene_id "jcn_only_AA.661"; transcript_id "jcn_only_AA.661"; gene_name "CUFF.1975"; flanks "60029064^,60036877^"; structure "1-,2-"; splice_chain "60035878-,60036877-"; psi "0.765600";
chr16	juncbase	jcn_only_AD	6093176	6400446	.	-	.	gene_id "jcn_only_AD.803"; transcript_id "jcn_only_AD.803"; gene_name "CUFF.1975"; flanks "6093176-,6400446-"; structure "1^,2^"; splice_chain "6093176^,6328434^"; psi "0.800905";
chr16	juncbase	jcn_only_AD	6028178	6400446	.	-	.	gene_id "jcn_only_AD.804"; transcript_id "jcn_only_AD.804"; gene_name "CUFF.1975"; flanks "6028178-,6400446-"; structure "1^,2^"; splice_chain "6028178^,6328434^"; psi "0.500000";
chr16	juncbase	jcn_only_AD	6028173	6400446	.	-	.	gene_id "jcn_only_AD.805"; transcript_id "jcn_only_AD.805"; gene_name "CUFF.1975"; flanks "6028173-,6400446-"; structure "1^,2^"; splice_chain "6028173^,6328434^"; psi "0.603604";
chr16	juncbase	jcn_only_AD	6093173	6400446	.	-	.	gene_id "jcn_only_AD.806"; transcript_id "jcn_only_AD.806"; gene_name "CUFF.1975"; flanks "6093173-,6400446-"; structure "1^,2^"; splice_chain "6093173^,6328434^"; psi "0.995470";
chr12	juncbase	intron_retention	52404991	52407471	.	-	.	gene_id "intron_retention.773"; transcript_id "intron_retention.773"; gene_name "CUFF.1975"; flanks "52404991-,52407471^"; structure "0,1^2-"; splice_chain ",52404991^52407471-"; psi "0.193200";
chr17	juncbase	intron_retention	79995507	79995423	.	-	.	gene_id "intron_retention.774"; transcript_id "intron_retention.774"; gene_name "CUFF.1975"; flanks "79995507-,79995423^"; structure "0,1^2-"; splice_chain ",79995507^79995423-"; psi "0.475600";
chr3	juncbase	intron_retention	57583059	57582950	.	-	.	gene_id "intron_retention.775"; transcript_id "intron_retention.775"; gene_name "CUFF.1975"; flanks "57583059-,57582950^"; structure "0,1^2-"; splice_chain ",57583059^57582950-"; psi "0.938600";
chr7	juncbase	cassette	75042210	75044163	.	-	.	gene_id "cassette.595"; transcript_id "cassette.595"; gene_name "CUFF.1975"; flanks "75042210^,75044163-"; structure "0,1-2^"; splice_chain ",75043918-75044076^"; psi "0.774400";
chr14	juncbase	intron_retention	77270718	77270255	.	-	.	gene_id "intron_retention.776"; transcript_id "intron_retention.776"; gene_name "CUFF.1975"; flanks "77270718-,77270255^"; structure "0,1^2-"; splice_chain ",77270718^77270255-"; psi "0.159100";
chr19	juncbase	cassette	16186982	16197233	.	-	.	gene_id "cassette.596"; transcript_id "cassette.596"; gene_name "CUFF.1975"; flanks "16186982^,16197233-"; structure "0,1-2^"; splice_chain ",16192723-16192856^"; psi "0.777400";
chr1	juncbase	jcn_only_AA	113497898	113471974	.	-	.	gene_id "jcn_only_AA.662"; transcript_id "jcn_only_AA.662"; gene_name "CUFF.1975"; flanks "113497898^,113471974^"; structure "1-,2-"; splice_chain "113472656-,113471974-"; psi "0.909100";
chr22	juncbase	intron_retention	51015286	51015066	.	-	.	gene_id "intron_retention.777"; transcript_id "intron_retention.777"; gene_name "CUFF.1975"; flanks "51015286-,51015066^"; structure "0,1^2-"; splice_chain ",51015286^51015066-"; psi "0.330200";
chr2	juncbase	intron_retention	220094622	220096650	.	-	.	gene_id "intron_retention.778"; transcript_id "intron_retention.778"; gene_name "CUFF.1975"; flanks "220094622-,220096650^"; structure "0,1^2-"; splice_chain ",220094622^220096650-"; psi "0.756800";
chr8	juncbase	jcn_only_AA	106456609	106573591	.	-	.	gene_id "jcn_only_AA.663"; transcript_id "jcn_only_AA.663"; gene_name "CUFF.1975"; flanks "106456609^,106573591^"; structure "1-,2-"; splice_chain "106463786-,106573591-"; psi "0.821400";
chr16	juncbase	intron_retention	21716358	21716490	.	-	.	gene_id "intron_retention.779"; transcript_id "intron_retention.779"; gene_name "CUFF.1975"; flanks "21716358-,21716490^"; structure "0,1^2-"; splice_chain ",21716358^21716490-"; psi "0.850000";
chr3	juncbase	cassette	125769741	125745322	.	-	.	gene_id "cassette.597"; transcript_id "cassette.597"; gene_name "CUFF.1975"; flanks "125769741^,125745322-"; structure "0,1-2^"; splice_chain ",125752521-125752450^"; psi "0.978500";
chr3	juncbase	cassette	141747421	141697524	.	-	.	gene_id "cassette.598"; transcript_id "cassette.598"; gene_name "CUFF.1975"; flanks "141747421^,141697524-"; structure "0,1-2^"; splice_chain ",141724386-141724283^"; psi "0.776600";
chr3	juncbase	cassette	141811903	141713983	.	-	.	gene_id "cassette.599"; transcript_id "cassette.599"; gene_name "CUFF.1975"; flanks "141811903^,141713983-"; structure "0,1-2^"; splice_chain ",141724386-141724283^"; psi "0.776600";
chr3	juncbase	cassette	141747421	141713983	.	-	.	gene_id "cassette.600"; transcript_id "cassette.600"; gene_name "CUFF.1975"; flanks "141747421^,141713983-"; structure "0,1-2^"; splice_chain ",141724386-141724283^"; psi "0.776600";
chrX	juncbase	intron_retention	46387785	46382560	.	-	.	gene_id "intron_retention.780"; transcript_id "intron_retention.780"; gene_name "CUFF.1975"; flanks "46387785-,46382560^"; structure "0,1^2-"; splice_chain ",46387785^46382560-"; psi "0.315100";
chr21	juncbase	jcn_only_AD	47556893	47556408	.	-	.	gene_id "jcn_only_AD.807"; transcript_id "jcn_only_AD.807"; gene_name "CUFF.1975"; flanks "47556893-,47556408-"; structure "1^,2^"; splice_chain "47556893^,47556829^"; psi "0.137993";
chr21	juncbase	jcn_only_AD	47556899	47556408	.	-	.	gene_id "jcn_only_AD.808"; transcript_id "jcn_only_AD.808"; gene_name "CUFF.1975"; flanks "47556899-,47556408-"; structure "1^,2^"; splice_chain "47556899^,47556829^"; psi "0.361001";
chr10	juncbase	jcn_only_AD	124134322	124152697	.	-	.	gene_id "jcn_only_AD.809"; transcript_id "jcn_only_AD.809"; gene_name "CUFF.1975"; flanks "124134322-,124152697-"; structure "1^,2^"; splice_chain "124134322^,124151888^"; psi "0.096233";
chr10	juncbase	jcn_only_AD	124134363	124152697	.	-	.	gene_id "jcn_only_AD.810"; transcript_id "jcn_only_AD.810"; gene_name "CUFF.1975"; flanks "124134363-,124152697-"; structure "1^,2^"; splice_chain "124134363^,124151888^"; psi "0.115704";
chr22	juncbase	intron_retention	51018403	51018231	.	-	.	gene_id "intron_retention.781"; transcript_id "intron_retention.781"; gene_name "CUFF.1975"; flanks "51018403-,51018231^"; structure "0,1^2-"; splice_chain ",51018403^51018231-"; psi "0.902100";
chr16	juncbase	intron_retention	4408368	4408104	.	-	.	gene_id "intron_retention.782"; transcript_id "intron_retention.782"; gene_name "CUFF.1975"; flanks "4408368-,4408104^"; structure "0,1^2-"; splice_chain ",4408368^4408104-"; psi "0.028400";
chr7	juncbase	intron_retention	107204692	107205033	.	-	.	gene_id "intron_retention.783"; transcript_id "intron_retention.783"; gene_name "CUFF.1975"; flanks "107204692-,107205033^"; structure "0,1^2-"; splice_chain ",107204692^107205033-"; psi "0.820200";
chr12	juncbase	intron_retention	77259929	77257124	.	-	.	gene_id "intron_retention.784"; transcript_id "intron_retention.784"; gene_name "CUFF.1975"; flanks "77259929-,77257124^"; structure "0,1^2-"; splice_chain ",77259929^77257124-"; psi "0.109500";
chr15	juncbase	jcn_only_AD	44881450	44878048	.	-	.	gene_id "jcn_only_AD.811"; transcript_id "jcn_only_AD.811"; gene_name "CUFF.1975"; flanks "44881450-,44878048-"; structure "1^,2^"; splice_chain "44881450^,44880765^"; psi "0.572000";
chr16	juncbase	intron_retention	3196086	3197259	.	-	.	gene_id "intron_retention.785"; transcript_id "intron_retention.785"; gene_name "CUFF.1975"; flanks "3196086-,3197259^"; structure "0,1^2-"; splice_chain ",3196086^3197259-"; psi "0.645200";
chr3	juncbase	jcn_only_AD	33557515	33552256	.	-	.	gene_id "jcn_only_AD.812"; transcript_id "jcn_only_AD.812"; gene_name "CUFF.1975"; flanks "33557515-,33552256-"; structure "1^,2^"; splice_chain "33557515^,33556072^"; psi "0.771200";
chr18	juncbase	jcn_only_AD	72920375	72914295	.	-	.	gene_id "jcn_only_AD.813"; transcript_id "jcn_only_AD.813"; gene_name "CUFF.1975"; flanks "72920375-,72914295-"; structure "1^,2^"; splice_chain "72920375^,72917148^"; psi "0.606773";
chr18	juncbase	jcn_only_AD	72920316	72914295	.	-	.	gene_id "jcn_only_AD.814"; transcript_id "jcn_only_AD.814"; gene_name "CUFF.1975"; flanks "72920316-,72914295-"; structure "1^,2^"; splice_chain "72920316^,72917148^"; psi "0.904040";
chr16	juncbase	intron_retention	31393217	31393789	.	-	.	gene_id "intron_retention.786"; transcript_id "intron_retention.786"; gene_name "CUFF.1975"; flanks "31393217-,31393789^"; structure "0,1^2-"; splice_chain ",31393217^31393789-"; psi "0.682900";
chr14	juncbase	jcn_only_AA	77934851	77935420	.	-	.	gene_id "jcn_only_AA.664"; transcript_id "jcn_only_AA.664"; gene_name "CUFF.1975"; flanks "77934851^,77935420^"; structure "1-,2-"; splice_chain "77934933-,77935420-"; psi "0.744200";
chr11	juncbase	jcn_only_AD	119056874	119057188	.	-	.	gene_id "jcn_only_AD.815"; transcript_id "jcn_only_AD.815"; gene_name "CUFF.1975"; flanks "119056874-,119057188-"; structure "1^,2^"; splice_chain "119056874^,119056950^"; psi "0.816300";
chr12	juncbase	jcn_only_AD	77256956	77254193	.	-	.	gene_id "jcn_only_AD.816"; transcript_id "jcn_only_AD.816"; gene_name "CUFF.1975"; flanks "77256956-,77254193-"; structure "1^,2^"; splice_chain "77256956^,77256590^"; psi "0.970800";
chr19	juncbase	intron_retention	49117697	49117593	.	-	.	gene_id "intron_retention.787"; transcript_id "intron_retention.787"; gene_name "CUFF.1975"; flanks "49117697-,49117593^"; structure "0,1^2-"; splice_chain ",49117697^49117593-"; psi "0.459100";
chr22	juncbase	intron_retention	30748940	30742508	.	-	.	gene_id "intron_retention.788"; transcript_id "intron_retention.788"; gene_name "CUFF.1975"; flanks "30748940-,30742508^"; structure "0,1^2-"; splice_chain ",30748940^30742508-"; psi "0.242900";
chr16	juncbase	cassette	21964777	21968738	.	-	.	gene_id "cassette.601"; transcript_id "cassette.601"; gene_name "CUFF.1975"; flanks "21964777^,21968738-"; structure "0,1-2^"; splice_chain ",21968556-21968639^"; psi "0.239800";
chr19	juncbase	cassette	6047418	6042134	.	-	.	gene_id "cassette.602"; transcript_id "cassette.602"; gene_name "CUFF.1975"; flanks "6047418^,6042134-"; structure "0,1-2^"; splice_chain ",6044293-6044204^"; psi "0.970400";
chr11	juncbase	intron_retention	67771418	67771268	.	-	.	gene_id "intron_retention.789"; transcript_id "intron_retention.789"; gene_name "CUFF.1975"; flanks "67771418-,67771268^"; structure "0,1^2-"; splice_chain ",67771418^67771268-"; psi "0.772600";
chr14	juncbase	cassette	24572099	24572719	.	-	.	gene_id "cassette.603"; transcript_id "cassette.603"; gene_name "CUFF.1975"; flanks "24572099^,24572719-"; structure "0,1-2^"; splice_chain ",24572369-24572464^"; psi "0.973500";
chr18	juncbase	cassette	44500022	44471017	.	-	.	gene_id "cassette.604"; transcript_id "cassette.604"; gene_name "CUFF.1975"; flanks "44500022^,44471017-"; structure "0,1-2^"; splice_chain ",44483596-44483490^"; psi "0.719600";
chr11	juncbase	jcn_only_AD	102962413	102960047	.	-	.	gene_id "jcn_only_AD.817"; transcript_id "jcn_only_AD.817"; gene_name "CUFF.1975"; flanks "102962413-,102960047-"; structure "1^,2^"; splice_chain "102962413^,102962245^"; psi "0.625063";
chr11	juncbase	jcn_only_AD	102962516	102960047	.	-	.	gene_id "jcn_only_AD.818"; transcript_id "jcn_only_AD.818"; gene_name "CUFF.1975"; flanks "102962516-,102960047-"; structure "1^,2^"; splice_chain "102962516^,102962245^"; psi "0.642241";
chr10	juncbase	jcn_only_AA	78674694	78669854	.	-	.	gene_id "jcn_only_AA.665"; transcript_id "jcn_only_AA.665"; gene_name "CUFF.1975"; flanks "78674694^,78669854^"; structure "1-,2-"; splice_chain "78673895-,78669854-"; psi "0.959600";
chr19	juncbase	intron_retention	51532598	51532468	.	-	.	gene_id "intron_retention.790"; transcript_id "intron_retention.790"; gene_name "CUFF.1975"; flanks "51532598-,51532468^"; structure "0,1^2-"; splice_chain ",51532598^51532468-"; psi "0.442600";
chr10	juncbase	cassette	123687359	123673408	.	-	.	gene_id "cassette.605"; transcript_id "cassette.605"; gene_name "CUFF.1975"; flanks "123687359^,123673408-"; structure "0,1-2^"; splice_chain ",123683844-123683781^"; psi "0.743900";
chr11	juncbase	intron_retention	102962413	102960038	.	-	.	gene_id "intron_retention.791"; transcript_id "intron_retention.791"; gene_name "CUFF.1975"; flanks "102962413-,102960038^"; structure "0,1^2-"; splice_chain ",102962413^102960038-"; psi "0.797500";
chr12	juncbase	cassette	69218210	69222551	.	-	.	gene_id "cassette.606"; transcript_id "cassette.606"; gene_name "CUFF.1975"; flanks "69218210^,69222551-"; structure "0,1-2^"; splice_chain ",69218335-69218431^"; psi "0.765400";
chr2	juncbase	cassette	264782	262786	.	-	.	gene_id "cassette.607"; transcript_id "cassette.607"; gene_name "CUFF.1975"; flanks "264782^,262786-"; structure "0,1-2^"; splice_chain ",263372-263211^"; psi "0.309800";
chr2	juncbase	cassette	264084	253115	.	-	.	gene_id "cassette.608"; transcript_id "cassette.608"; gene_name "CUFF.1975"; flanks "264084^,253115-"; structure "0,1-2^"; splice_chain ",263372-263211^"; psi "0.309800";
chr2	juncbase	cassette	264782	253115	.	-	.	gene_id "cassette.609"; transcript_id "cassette.609"; gene_name "CUFF.1975"; flanks "264782^,253115-"; structure "0,1-2^"; splice_chain ",263372-263211^"; psi "0.309800";
chr20	juncbase	jcn_only_AD	21284111	21306917	.	-	.	gene_id "jcn_only_AD.819"; transcript_id "jcn_only_AD.819"; gene_name "CUFF.1975"; flanks "21284111-,21306917-"; structure "1^,2^"; splice_chain "21284111^,21284485^"; psi "0.243200";
chr22	juncbase	cassette	24765288	24808616	.	-	.	gene_id "cassette.610"; transcript_id "cassette.610"; gene_name "CUFF.1975"; flanks "24765288^,24808616-"; structure "0,1-2^"; splice_chain ",24807556-24807672^"; psi "0.130800";
chr6	juncbase	jcn_only_AA	31939097	31938916	.	-	.	gene_id "jcn_only_AA.666"; transcript_id "jcn_only_AA.666"; gene_name "CUFF.1975"; flanks "31939097^,31938916^"; structure "1-,2-"; splice_chain "31938924-,31938916-"; psi "0.062800";
chr8	juncbase	jcn_only_AD	74891096	74893390	.	-	.	gene_id "jcn_only_AD.820"; transcript_id "jcn_only_AD.820"; gene_name "CUFF.1975"; flanks "74891096-,74893390-"; structure "1^,2^"; splice_chain "74891096^,74891110^"; psi "0.206788";
chr19	juncbase	intron_retention	1439825	1440018	.	-	.	gene_id "intron_retention.792"; transcript_id "intron_retention.792"; gene_name "CUFF.1975"; flanks "1439825-,1440018^"; structure "0,1^2-"; splice_chain ",1439825^1440018-"; psi "0.583100";
chr16	juncbase	intron_retention	75589969	75589871	.	-	.	gene_id "intron_retention.793"; transcript_id "intron_retention.793"; gene_name "CUFF.1975"; flanks "75589969-,75589871^"; structure "0,1^2-"; splice_chain ",75589969^75589871-"; psi "0.349300";
chr17	juncbase	cassette	61907309	61907631	.	-	.	gene_id "cassette.611"; transcript_id "cassette.611"; gene_name "CUFF.1975"; flanks "61907309^,61907631-"; structure "0,1-2^"; splice_chain ",61907493-61907549^"; psi "0.903700";
chr17	juncbase	intron_retention	56083871	56082402	.	-	.	gene_id "intron_retention.794"; transcript_id "intron_retention.794"; gene_name "CUFF.1975"; flanks "56083871-,56082402^"; structure "0,1^2-"; splice_chain ",56083871^56082402-"; psi "0.616500";
chr2	juncbase	cassette	86398331	86393767	.	-	.	gene_id "cassette.612"; transcript_id "cassette.612"; gene_name "CUFF.1975"; flanks "86398331^,86393767-"; structure "0,1-2^"; splice_chain ",86397964-86397872^"; psi "0.932100";
chr11	juncbase	intron_retention	65480305	65480393	.	-	.	gene_id "intron_retention.795"; transcript_id "intron_retention.795"; gene_name "CUFF.1975"; flanks "65480305-,65480393^"; structure "0,1^2-"; splice_chain ",65480305^65480393-"; psi "0.007200";
chr11	juncbase	jcn_only_AA	10830252	10828866	.	-	.	gene_id "jcn_only_AA.667"; transcript_id "jcn_only_AA.667"; gene_name "CUFF.1975"; flanks "10830252^,10828866^"; structure "1-,2-"; splice_chain "10830055-,10828866-"; psi "0.350000";
chr19	juncbase	jcn_only_AD	51535132	51534177	.	-	.	gene_id "jcn_only_AD.821"; transcript_id "jcn_only_AD.821"; gene_name "CUFF.1975"; flanks "51535132-,51534177-"; structure "1^,2^"; splice_chain "51535132^,51535036^"; psi "0.299100";
chr6	juncbase	jcn_only_AA	128316607	128313854	.	-	.	gene_id "jcn_only_AA.668"; transcript_id "jcn_only_AA.668"; gene_name "CUFF.1975"; flanks "128316607^,128313854^"; structure "1-,2-"; splice_chain "128316411-,128313854-"; psi "0.342100";
chr4	juncbase	intron_retention	68927630	68927569	.	-	.	gene_id "intron_retention.796"; transcript_id "intron_retention.796"; gene_name "CUFF.1975"; flanks "68927630-,68927569^"; structure "0,1^2-"; splice_chain ",68927630^68927569-"; psi "0.057100";
chr8	juncbase	cassette	80965517	80963863	.	-	.	gene_id "cassette.613"; transcript_id "cassette.613"; gene_name "CUFF.1975"; flanks "80965517^,80963863-"; structure "0,1-2^"; splice_chain ",80964910-80964841^"; psi "0.266800";
chr12	juncbase	jcn_only_AD	13349806	13364403	.	-	.	gene_id "jcn_only_AD.822"; transcript_id "jcn_only_AD.822"; gene_name "CUFF.1975"; flanks "13349806-,13364403-"; structure "1^,2^"; splice_chain "13349806^,13352467^"; psi "0.996000";
chr4	juncbase	jcn_only_AD	6382768	6380299	.	-	.	gene_id "jcn_only_AD.823"; transcript_id "jcn_only_AD.823"; gene_name "CUFF.1975"; flanks "6382768-,6380299-"; structure "1^,2^"; splice_chain "6382768^,6382724^"; psi "0.083500";
chr1	juncbase	jcn_only_AD	70820790	70831829	.	-	.	gene_id "jcn_only_AD.824"; transcript_id "jcn_only_AD.824"; gene_name "CUFF.1975"; flanks "70820790-,70831829-"; structure "1^,2^"; splice_chain "70820790^,70820891^"; psi "0.569400";
chr17	juncbase	intron_retention	79478953	79478604	.	-	.	gene_id "intron_retention.797"; transcript_id "intron_retention.797"; gene_name "CUFF.1975"; flanks "79478953-,79478604^"; structure "0,1^2-"; splice_chain ",79478953^79478604-"; psi "0.516100";
chr3	juncbase	jcn_only_AD	119501147	119526076	.	-	.	gene_id "jcn_only_AD.825"; transcript_id "jcn_only_AD.825"; gene_name "CUFF.1975"; flanks "119501147-,119526076-"; structure "1^,2^"; splice_chain "119501147^,119501699^"; psi "0.855300";
chr2	juncbase	jcn_only_AA	101609989	101612258	.	-	.	gene_id "jcn_only_AA.669"; transcript_id "jcn_only_AA.669"; gene_name "CUFF.1975"; flanks "101609989^,101612258^"; structure "1-,2-"; splice_chain "101611862-,101612258-"; psi "0.256800";
chr18	juncbase	jcn_only_AD	55711940	55833020	.	-	.	gene_id "jcn_only_AD.826"; transcript_id "jcn_only_AD.826"; gene_name "CUFF.1975"; flanks "55711940-,55833020-"; structure "1^,2^"; splice_chain "55711940^,55713250^"; psi "0.339301";
chr18	juncbase	jcn_only_AD	55713020	55833020	.	-	.	gene_id "jcn_only_AD.827"; transcript_id "jcn_only_AD.827"; gene_name "CUFF.1975"; flanks "55713020-,55833020-"; structure "1^,2^"; splice_chain "55713020^,55713250^"; psi "0.531143";
chr18	juncbase	jcn_only_AD	55712847	55833020	.	-	.	gene_id "jcn_only_AD.828"; transcript_id "jcn_only_AD.828"; gene_name "CUFF.1975"; flanks "55712847-,55833020-"; structure "1^,2^"; splice_chain "55712847^,55713250^"; psi "0.493132";
chr2	juncbase	jcn_only_AD	208031481	208030430	.	-	.	gene_id "jcn_only_AD.829"; transcript_id "jcn_only_AD.829"; gene_name "CUFF.1975"; flanks "208031481-,208030430-"; structure "1^,2^"; splice_chain "208031481^,208030637^"; psi "0.208377";
chr2	juncbase	jcn_only_AD	208031718	208030430	.	-	.	gene_id "jcn_only_AD.830"; transcript_id "jcn_only_AD.830"; gene_name "CUFF.1975"; flanks "208031718-,208030430-"; structure "1^,2^"; splice_chain "208031718^,208030637^"; psi "0.574738";
chr22	juncbase	cassette	37697060	37699295	.	-	.	gene_id "cassette.614"; transcript_id "cassette.614"; gene_name "CUFF.1975"; flanks "37697060^,37699295-"; structure "0,1-2^"; splice_chain ",37697976-37698072^"; psi "0.384100";
chr16	juncbase	intron_retention	23507015	23505699	.	-	.	gene_id "intron_retention.798"; transcript_id "intron_retention.798"; gene_name "CUFF.1975"; flanks "23507015-,23505699^"; structure "0,1^2-"; splice_chain ",23507015^23505699-"; psi "0.069100";
chr16	juncbase	intron_retention	23478310	23478151	.	-	.	gene_id "intron_retention.799"; transcript_id "intron_retention.799"; gene_name "CUFF.1975"; flanks "23478310-,23478151^"; structure "0,1^2-"; splice_chain ",23478310^23478151-"; psi "0.245300";
chr10	juncbase	jcn_only_AA	79397023	79396273	.	-	.	gene_id "jcn_only_AA.670"; transcript_id "jcn_only_AA.670"; gene_name "CUFF.1975"; flanks "79397023^,79396273^"; structure "1-,2-"; splice_chain "79396327-,79396273-"; psi "0.634362";
chr10	juncbase	jcn_only_AA	79397023	79163781	.	-	.	gene_id "jcn_only_AA.671"; transcript_id "jcn_only_AA.671"; gene_name "CUFF.1975"; flanks "79397023^,79163781^"; structure "1-,2-"; splice_chain "79396327-,79163781-"; psi "0.600948";
chr11	juncbase	intron_retention	65480391	65480303	.	-	.	gene_id "intron_retention.800"; transcript_id "intron_retention.800"; gene_name "CUFF.1975"; flanks "65480391-,65480303^"; structure "0,1^2-"; splice_chain ",65480391^65480303-"; psi "0.789500";
chr11	juncbase	intron_retention	107975629	107976934	.	-	.	gene_id "intron_retention.801"; transcript_id "intron_retention.801"; gene_name "CUFF.1975"; flanks "107975629-,107976934^"; structure "0,1^2-"; splice_chain ",107975629^107976934-"; psi "0.823500";
chr14	juncbase	intron_retention	50246393	50246466	.	-	.	gene_id "intron_retention.802"; transcript_id "intron_retention.802"; gene_name "CUFF.1975"; flanks "50246393-,50246466^"; structure "0,1^2-"; splice_chain ",50246393^50246466-"; psi "0.417700";
chr22	juncbase	jcn_only_AA	18102227	18096086	.	-	.	gene_id "jcn_only_AA.672"; transcript_id "jcn_only_AA.672"; gene_name "CUFF.1975"; flanks "18102227^,18096086^"; structure "1-,2-"; splice_chain "18101893-,18096086-"; psi "0.948300";
chr2	juncbase	jcn_only_AA	231934882	231937047	.	-	.	gene_id "jcn_only_AA.673"; transcript_id "jcn_only_AA.673"; gene_name "CUFF.1975"; flanks "231934882^,231937047^"; structure "1-,2-"; splice_chain "231936903-,231937047-"; psi "0.367700";
chr4	juncbase	cassette	81115393	81117506	.	-	.	gene_id "cassette.615"; transcript_id "cassette.615"; gene_name "CUFF.1975"; flanks "81115393^,81117506-"; structure "0,1-2^"; splice_chain ",81117167-81117278^"; psi "0.271900";
chr17	juncbase	jcn_only_AA	57784732	57756905	.	-	.	gene_id "jcn_only_AA.674"; transcript_id "jcn_only_AA.674"; gene_name "CUFF.1975"; flanks "57784732^,57756905^"; structure "1-,2-"; splice_chain "57777237-,57756905-"; psi "0.943868";
chr17	juncbase	jcn_only_AA	57784732	57775339	.	-	.	gene_id "jcn_only_AA.675"; transcript_id "jcn_only_AA.675"; gene_name "CUFF.1975"; flanks "57784732^,57775339^"; structure "1-,2-"; splice_chain "57777237-,57775339-"; psi "0.369674";
chr17	juncbase	intron_retention	61906923	61907212	.	-	.	gene_id "intron_retention.803"; transcript_id "intron_retention.803"; gene_name "CUFF.1975"; flanks "61906923-,61907212^"; structure "0,1^2-"; splice_chain ",61906923^61907212-"; psi "0.044500";
chr14	juncbase	jcn_only_AD	75142444	75140814	.	-	.	gene_id "jcn_only_AD.831"; transcript_id "jcn_only_AD.831"; gene_name "CUFF.1975"; flanks "75142444-,75140814-"; structure "1^,2^"; splice_chain "75142444^,75142402^"; psi "0.331200";
chr18	juncbase	jcn_only_AA	12658342	12658573	.	-	.	gene_id "jcn_only_AA.676"; transcript_id "jcn_only_AA.676"; gene_name "CUFF.1975"; flanks "12658342^,12658573^"; structure "1-,2-"; splice_chain "12658550-,12658573-"; psi "0.429800";
chr7	juncbase	jcn_only_AD	73098231	73100966	.	-	.	gene_id "jcn_only_AD.832"; transcript_id "jcn_only_AD.832"; gene_name "CUFF.1975"; flanks "73098231-,73100966-"; structure "1^,2^"; splice_chain "73098231^,73098330^"; psi "0.671292";
chr7	juncbase	jcn_only_AD	73097713	73100966	.	-	.	gene_id "jcn_only_AD.833"; transcript_id "jcn_only_AD.833"; gene_name "CUFF.1975"; flanks "73097713-,73100966-"; structure "1^,2^"; splice_chain "73097713^,73098330^"; psi "0.126728";
chr7	juncbase	jcn_only_AD	73098253	73100966	.	-	.	gene_id "jcn_only_AD.834"; transcript_id "jcn_only_AD.834"; gene_name "CUFF.1975"; flanks "73098253-,73100966-"; structure "1^,2^"; splice_chain "73098253^,73098330^"; psi "0.945239";
chr7	juncbase	jcn_only_AD	73098134	73100966	.	-	.	gene_id "jcn_only_AD.835"; transcript_id "jcn_only_AD.835"; gene_name "CUFF.1975"; flanks "73098134-,73100966-"; structure "1^,2^"; splice_chain "73098134^,73098330^"; psi "0.855839";
chr17	juncbase	intron_retention	1945525	1945899	.	-	.	gene_id "intron_retention.804"; transcript_id "intron_retention.804"; gene_name "CUFF.1975"; flanks "1945525-,1945899^"; structure "0,1^2-"; splice_chain ",1945525^1945899-"; psi "0.875000";
chr7	juncbase	intron_retention	107220811	107221204	.	-	.	gene_id "intron_retention.805"; transcript_id "intron_retention.805"; gene_name "CUFF.1975"; flanks "107220811-,107221204^"; structure "0,1^2-"; splice_chain ",107220811^107221204-"; psi "0.507200";
chr2	juncbase	intron_retention	79363091	79362889	.	-	.	gene_id "intron_retention.806"; transcript_id "intron_retention.806"; gene_name "CUFF.1975"; flanks "79363091-,79362889^"; structure "0,1^2-"; splice_chain ",79363091^79362889-"; psi "0.598800";
chr12	juncbase	intron_retention	53846759	53848510	.	-	.	gene_id "intron_retention.807"; transcript_id "intron_retention.807"; gene_name "CUFF.1975"; flanks "53846759-,53848510^"; structure "0,1^2-"; splice_chain ",53846759^53848510-"; psi "0.880300";
chr2	juncbase	jcn_only_AA	16573594	16613773	.	-	.	gene_id "jcn_only_AA.677"; transcript_id "jcn_only_AA.677"; gene_name "CUFF.1975"; flanks "16573594^,16613773^"; structure "1-,2-"; splice_chain "16612999-,16613773-"; psi "0.918300";
chr19	juncbase	jcn_only_AA	11467652	11468336	.	-	.	gene_id "jcn_only_AA.678"; transcript_id "jcn_only_AA.678"; gene_name "CUFF.1975"; flanks "11467652^,11468336^"; structure "1-,2-"; splice_chain "11468295-,11468336-"; psi "0.345400";
chr2	juncbase	cassette	175816892	175742856	.	-	.	gene_id "cassette.616"; transcript_id "cassette.616"; gene_name "CUFF.1975"; flanks "175816892^,175742856-"; structure "0,1-2^"; splice_chain ",175779899-175779786^"; psi "0.540100";
chr14	juncbase	jcn_only_AA	92246920	92195823	.	-	.	gene_id "jcn_only_AA.679"; transcript_id "jcn_only_AA.679"; gene_name "CUFF.1975"; flanks "92246920^,92195823^"; structure "1-,2-"; splice_chain "92245414-,92195823-"; psi "0.690491";
chr14	juncbase	jcn_only_AA	92246920	92203193	.	-	.	gene_id "jcn_only_AA.680"; transcript_id "jcn_only_AA.680"; gene_name "CUFF.1975"; flanks "92246920^,92203193^"; structure "1-,2-"; splice_chain "92245414-,92203193-"; psi "0.625000";
chr11	juncbase	intron_retention	65480068	65480237	.	-	.	gene_id "intron_retention.808"; transcript_id "intron_retention.808"; gene_name "CUFF.1975"; flanks "65480068-,65480237^"; structure "0,1^2-"; splice_chain ",65480068^65480237-"; psi "0.693900";
chr8	juncbase	intron_retention	22012905	22012144	.	-	.	gene_id "intron_retention.809"; transcript_id "intron_retention.809"; gene_name "CUFF.1975"; flanks "22012905-,22012144^"; structure "0,1^2-"; splice_chain ",22012905^22012144-"; psi "0.134500";
chr17	juncbase	intron_retention	79994597	79994519	.	-	.	gene_id "intron_retention.810"; transcript_id "intron_retention.810"; gene_name "CUFF.1975"; flanks "79994597-,79994519^"; structure "0,1^2-"; splice_chain ",79994597^79994519-"; psi "0.067300";
chr11	juncbase	jcn_only_AD	117070545	117073718	.	-	.	gene_id "jcn_only_AD.836"; transcript_id "jcn_only_AD.836"; gene_name "CUFF.1975"; flanks "117070545-,117073718-"; structure "1^,2^"; splice_chain "117070545^,117071058^"; psi "0.851066";
chr11	juncbase	jcn_only_AD	117070148	117073718	.	-	.	gene_id "jcn_only_AD.837"; transcript_id "jcn_only_AD.837"; gene_name "CUFF.1975"; flanks "117070148-,117073718-"; structure "1^,2^"; splice_chain "117070148^,117071058^"; psi "0.419954";
chr10	juncbase	cassette	78771725	78729825	.	-	.	gene_id "cassette.617"; transcript_id "cassette.617"; gene_name "CUFF.1975"; flanks "78771725^,78729825-"; structure "0,1-2^"; splice_chain ",78761338-78761165^"; psi "0.722700";
chr5	juncbase	jcn_only_AA	139815842	139818088	.	-	.	gene_id "jcn_only_AA.681"; transcript_id "jcn_only_AA.681"; gene_name "CUFF.1975"; flanks "139815842^,139818088^"; structure "1-,2-"; splice_chain "139818079-,139818088-"; psi "0.337729";
chr15	juncbase	jcn_only_AA	24803468	24811803	.	-	.	gene_id "jcn_only_AA.682"; transcript_id "jcn_only_AA.682"; gene_name "CUFF.1975"; flanks "24803468^,24811803^"; structure "1-,2-"; splice_chain "24811236-,24811803-"; psi "0.714300";
chr7	juncbase	jcn_only_AD	73097713	73100966	.	-	.	gene_id "jcn_only_AD.838"; transcript_id "jcn_only_AD.838"; gene_name "CUFF.1975"; flanks "73097713-,73100966-"; structure "1^,2^"; splice_chain "73097713^,73098231^"; psi "0.066345";
chr7	juncbase	jcn_only_AD	73098134	73100966	.	-	.	gene_id "jcn_only_AD.839"; transcript_id "jcn_only_AD.839"; gene_name "CUFF.1975"; flanks "73098134-,73100966-"; structure "1^,2^"; splice_chain "73098134^,73098231^"; psi "0.744048";
chr11	juncbase	intron_retention	64001452	64001545	.	-	.	gene_id "intron_retention.811"; transcript_id "intron_retention.811"; gene_name "CUFF.1975"; flanks "64001452-,64001545^"; structure "0,1^2-"; splice_chain ",64001452^64001545-"; psi "0.286600";
chr15	juncbase	intron_retention	40545215	40545379	.	-	.	gene_id "intron_retention.812"; transcript_id "intron_retention.812"; gene_name "CUFF.1975"; flanks "40545215-,40545379^"; structure "0,1^2-"; splice_chain ",40545215^40545379-"; psi "0.024200";
chr10	juncbase	cassette	35485070	35495823	.	-	.	gene_id "cassette.618"; transcript_id "cassette.618"; gene_name "CUFF.1975"; flanks "35485070^,35495823-"; structure "0,1-2^"; splice_chain ",35490379-35490414^"; psi "0.341900";
chr10	juncbase	cassette	35484142	35495823	.	-	.	gene_id "cassette.619"; transcript_id "cassette.619"; gene_name "CUFF.1975"; flanks "35484142^,35495823-"; structure "0,1-2^"; splice_chain ",35490379-35490414^"; psi "0.341900";
chr10	juncbase	cassette	35485027	35495823	.	-	.	gene_id "cassette.620"; transcript_id "cassette.620"; gene_name "CUFF.1975"; flanks "35485027^,35495823-"; structure "0,1-2^"; splice_chain ",35490379-35490414^"; psi "0.341900";
chr10	juncbase	cassette	35477316	35495823	.	-	.	gene_id "cassette.621"; transcript_id "cassette.621"; gene_name "CUFF.1975"; flanks "35477316^,35495823-"; structure "0,1-2^"; splice_chain ",35490379-35490414^"; psi "0.341900";
chr10	juncbase	cassette	35468204	35495823	.	-	.	gene_id "cassette.622"; transcript_id "cassette.622"; gene_name "CUFF.1975"; flanks "35468204^,35495823-"; structure "0,1-2^"; splice_chain ",35490379-35490414^"; psi "0.341900";
chr3	juncbase	intron_retention	28360370	28361000	.	-	.	gene_id "intron_retention.813"; transcript_id "intron_retention.813"; gene_name "CUFF.1975"; flanks "28360370-,28361000^"; structure "0,1^2-"; splice_chain ",28360370^28361000-"; psi "0.937500";
chr1	juncbase	jcn_only_AD	151162600	151158426	.	-	.	gene_id "jcn_only_AD.840"; transcript_id "jcn_only_AD.840"; gene_name "CUFF.1975"; flanks "151162600-,151158426-"; structure "1^,2^"; splice_chain "151162600^,151162481^"; psi "0.567600";
chr16	juncbase	jcn_only_AA	76181458	76170263	.	-	.	gene_id "jcn_only_AA.683"; transcript_id "jcn_only_AA.683"; gene_name "CUFF.1975"; flanks "76181458^,76170263^"; structure "1-,2-"; splice_chain "76174301-,76170263-"; psi "0.120300";
chr17	juncbase	intron_retention	79917347	79916871	.	-	.	gene_id "intron_retention.814"; transcript_id "intron_retention.814"; gene_name "CUFF.1975"; flanks "79917347-,79916871^"; structure "0,1^2-"; splice_chain ",79917347^79916871-"; psi "0.105500";
chr8	juncbase	jcn_only_AD	30671403	30657271	.	-	.	gene_id "jcn_only_AD.841"; transcript_id "jcn_only_AD.841"; gene_name "CUFF.1975"; flanks "30671403-,30657271-"; structure "1^,2^"; splice_chain "30671403^,30669836^"; psi "0.606021";
chr21	juncbase	jcn_only_AA	40981510	40977929	.	-	.	gene_id "jcn_only_AA.684"; transcript_id "jcn_only_AA.684"; gene_name "CUFF.1975"; flanks "40981510^,40977929^"; structure "1-,2-"; splice_chain "40978274-,40977929-"; psi "0.623300";
chr16	juncbase	intron_retention	31368422	31368574	.	-	.	gene_id "intron_retention.815"; transcript_id "intron_retention.815"; gene_name "CUFF.1975"; flanks "31368422-,31368574^"; structure "0,1^2-"; splice_chain ",31368422^31368574-"; psi "0.758600";
chr19	juncbase	intron_retention	11474511	11474837	.	-	.	gene_id "intron_retention.816"; transcript_id "intron_retention.816"; gene_name "CUFF.1975"; flanks "11474511-,11474837^"; structure "0,1^2-"; splice_chain ",11474511^11474837-"; psi "0.993800";
chr15	juncbase	jcn_only_AD	55700984	55710421	.	-	.	gene_id "jcn_only_AD.842"; transcript_id "jcn_only_AD.842"; gene_name "CUFF.1975"; flanks "55700984-,55710421-"; structure "1^,2^"; splice_chain "55700984^,55709957^"; psi "0.548800";
chr4	juncbase	jcn_only_AA	645877	647641	.	-	.	gene_id "jcn_only_AA.685"; transcript_id "jcn_only_AA.685"; gene_name "CUFF.1975"; flanks "645877^,647641^"; structure "1-,2-"; splice_chain "646285-,647641-"; psi "0.308500";
chr7	juncbase	jcn_only_AD	117450819	117432835	.	-	.	gene_id "jcn_only_AD.843"; transcript_id "jcn_only_AD.843"; gene_name "CUFF.1975"; flanks "117450819-,117432835-"; structure "1^,2^"; splice_chain "117450819^,117433467^"; psi "0.762900";
chr20	juncbase	cassette	30149539	30156923	.	-	.	gene_id "cassette.623"; transcript_id "cassette.623"; gene_name "CUFF.1975"; flanks "30149539^,30156923-"; structure "0,1-2^"; splice_chain ",30154013-30154098^"; psi "0.896300";
chr11	juncbase	cassette	5699434	5687311	.	-	.	gene_id "cassette.624"; transcript_id "cassette.624"; gene_name "CUFF.1975"; flanks "5699434^,5687311-"; structure "0,1-2^"; splice_chain ",5688941-5688919^"; psi "0.420600";
chr4	juncbase	intron_retention	69056966	69054334	.	-	.	gene_id "intron_retention.817"; transcript_id "intron_retention.817"; gene_name "CUFF.1975"; flanks "69056966-,69054334^"; structure "0,1^2-"; splice_chain ",69056966^69054334-"; psi "0.756200";
chr17	juncbase	jcn_only_AA	80416706	80417876	.	-	.	gene_id "jcn_only_AA.686"; transcript_id "jcn_only_AA.686"; gene_name "CUFF.1975"; flanks "80416706^,80417876^"; structure "1-,2-"; splice_chain "80417868-,80417876-"; psi "0.073100";
chr3	juncbase	jcn_only_AD	127317039	127313776	.	-	.	gene_id "jcn_only_AD.844"; transcript_id "jcn_only_AD.844"; gene_name "CUFF.1975"; flanks "127317039-,127313776-"; structure "1^,2^"; splice_chain "127317039^,127314295^"; psi "0.092000";
chr2	juncbase	cassette	160602448	160608913	.	-	.	gene_id "cassette.625"; transcript_id "cassette.625"; gene_name "CUFF.1975"; flanks "160602448^,160608913-"; structure "0,1-2^"; splice_chain ",160604316-160605414^"; psi "0.467300";
chr2	juncbase	intron_retention	110883214	110881640	.	-	.	gene_id "intron_retention.818"; transcript_id "intron_retention.818"; gene_name "CUFF.1975"; flanks "110883214-,110881640^"; structure "0,1^2-"; splice_chain ",110883214^110881640-"; psi "0.102900";
chr19	juncbase	cassette	8165785	8161890	.	-	.	gene_id "cassette.626"; transcript_id "cassette.626"; gene_name "CUFF.1975"; flanks "8165785^,8161890-"; structure "0,1-2^"; splice_chain ",8162298-8162173^"; psi "0.879000";
chr16	juncbase	cassette	21987564	21994409	.	-	.	gene_id "cassette.627"; transcript_id "cassette.627"; gene_name "CUFF.1975"; flanks "21987564^,21994409-"; structure "0,1-2^"; splice_chain ",21991868-21992021^"; psi "0.525500";
chr11	juncbase	jcn_only_AD	63998412	63999343	.	-	.	gene_id "jcn_only_AD.845"; transcript_id "jcn_only_AD.845"; gene_name "CUFF.1975"; flanks "63998412-,63999343-"; structure "1^,2^"; splice_chain "63998412^,63998619^"; psi "0.825800";
chr2	juncbase	intron_retention	86400773	86397964	.	-	.	gene_id "intron_retention.819"; transcript_id "intron_retention.819"; gene_name "CUFF.1975"; flanks "86400773-,86397964^"; structure "0,1^2-"; splice_chain ",86400773^86397964-"; psi "0.907400";
chr3	juncbase	intron_retention	126133022	126135159	.	-	.	gene_id "intron_retention.820"; transcript_id "intron_retention.820"; gene_name "CUFF.1975"; flanks "126133022-,126135159^"; structure "0,1^2-"; splice_chain ",126133022^126135159-"; psi "0.113200";
chr21	juncbase	cassette	40178044	40181959	.	-	.	gene_id "cassette.628"; transcript_id "cassette.628"; gene_name "CUFF.1975"; flanks "40178044^,40181959-"; structure "0,1-2^"; splice_chain ",40178375-40178732^"; psi "0.767900";
chr7	juncbase	intron_retention	73106976	73107659	.	-	.	gene_id "intron_retention.821"; transcript_id "intron_retention.821"; gene_name "CUFF.1975"; flanks "73106976-,73107659^"; structure "0,1^2-"; splice_chain ",73106976^73107659-"; psi "0.010900";
chr4	juncbase	intron_retention	657659	657903	.	-	.	gene_id "intron_retention.822"; transcript_id "intron_retention.822"; gene_name "CUFF.1975"; flanks "657659-,657903^"; structure "0,1^2-"; splice_chain ",657659^657903-"; psi "0.249000";
chr7	juncbase	jcn_only_AD	117514055	117501370	.	-	.	gene_id "jcn_only_AD.846"; transcript_id "jcn_only_AD.846"; gene_name "CUFF.1975"; flanks "117514055-,117501370-"; structure "1^,2^"; splice_chain "117514055^,117512158^"; psi "0.787890";
chr10	juncbase	jcn_only_AA	46147414	46143982	.	-	.	gene_id "jcn_only_AA.687"; transcript_id "jcn_only_AA.687"; gene_name "CUFF.1975"; flanks "46147414^,46143982^"; structure "1-,2-"; splice_chain "46147073-,46143982-"; psi "0.962700";
chr16	juncbase	jcn_only_AD	70255157	70254783	.	-	.	gene_id "jcn_only_AD.847"; transcript_id "jcn_only_AD.847"; gene_name "CUFF.1975"; flanks "70255157-,70254783-"; structure "1^,2^"; splice_chain "70255157^,70255153^"; psi "0.815400";
chr19	juncbase	intron_retention	58965711	58966550	.	-	.	gene_id "intron_retention.823"; transcript_id "intron_retention.823"; gene_name "CUFF.1975"; flanks "58965711-,58966550^"; structure "0,1^2-"; splice_chain ",58965711^58966550-"; psi "0.310200";
chr17	juncbase	intron_retention	79994420	79994324	.	-	.	gene_id "intron_retention.824"; transcript_id "intron_retention.824"; gene_name "CUFF.1975"; flanks "79994420-,79994324^"; structure "0,1^2-"; splice_chain ",79994420^79994324-"; psi "0.240400";
chr19	juncbase	cassette	17598338	17599817	.	-	.	gene_id "cassette.629"; transcript_id "cassette.629"; gene_name "CUFF.1975"; flanks "17598338^,17599817-"; structure "0,1-2^"; splice_chain ",17599657-17599748^"; psi "0.823300";
chr17	juncbase	intron_retention	79479641	79479386	.	-	.	gene_id "intron_retention.825"; transcript_id "intron_retention.825"; gene_name "CUFF.1975"; flanks "79479641-,79479386^"; structure "0,1^2-"; splice_chain ",79479641^79479386-"; psi "0.080000";
chrX	juncbase	jcn_only_AD	153238311	153247301	.	-	.	gene_id "jcn_only_AD.848"; transcript_id "jcn_only_AD.848"; gene_name "CUFF.1975"; flanks "153238311-,153247301-"; structure "1^,2^"; splice_chain "153238311^,153238337^"; psi "0.412188";
chr2	juncbase	jcn_only_AD	207630378	207631368	.	-	.	gene_id "jcn_only_AD.849"; transcript_id "jcn_only_AD.849"; gene_name "CUFF.1975"; flanks "207630378-,207631368-"; structure "1^,2^"; splice_chain "207630378^,207630471^"; psi "0.687450";
chr2	juncbase	jcn_only_AD	207630242	207631368	.	-	.	gene_id "jcn_only_AD.850"; transcript_id "jcn_only_AD.850"; gene_name "CUFF.1975"; flanks "207630242-,207631368-"; structure "1^,2^"; splice_chain "207630242^,207630471^"; psi "0.660834";
chr19	juncbase	jcn_only_AA	14867050	14866656	.	-	.	gene_id "jcn_only_AA.688"; transcript_id "jcn_only_AA.688"; gene_name "CUFF.1975"; flanks "14867050^,14866656^"; structure "1-,2-"; splice_chain "14866689-,14866656-"; psi "0.450600";
chr3	juncbase	jcn_only_AA	107591815	107586272	.	-	.	gene_id "jcn_only_AA.689"; transcript_id "jcn_only_AA.689"; gene_name "CUFF.1975"; flanks "107591815^,107586272^"; structure "1-,2-"; splice_chain "107591327-,107586272-"; psi "0.808833";
chr3	juncbase	jcn_only_AA	107591815	107576049	.	-	.	gene_id "jcn_only_AA.690"; transcript_id "jcn_only_AA.690"; gene_name "CUFF.1975"; flanks "107591815^,107576049^"; structure "1-,2-"; splice_chain "107591327-,107576049-"; psi "0.905737";
chr3	juncbase	jcn_only_AA	107591815	107586424	.	-	.	gene_id "jcn_only_AA.691"; transcript_id "jcn_only_AA.691"; gene_name "CUFF.1975"; flanks "107591815^,107586424^"; structure "1-,2-"; splice_chain "107591327-,107586424-"; psi "0.706031";
chr9	juncbase	intron_retention	12191	12293	.	-	.	gene_id "intron_retention.826"; transcript_id "intron_retention.826"; gene_name "CUFF.1975"; flanks "12191-,12293^"; structure "0,1^2-"; splice_chain ",12191^12293-"; psi "0.028600";
chr2	juncbase	intron_retention	3481566	3482617	.	-	.	gene_id "intron_retention.827"; transcript_id "intron_retention.827"; gene_name "CUFF.1975"; flanks "3481566-,3482617^"; structure "0,1^2-"; splice_chain ",3481566^3482617-"; psi "0.074700";
chr11	juncbase	intron_retention	118402914	118403050	.	-	.	gene_id "intron_retention.828"; transcript_id "intron_retention.828"; gene_name "CUFF.1975"; flanks "118402914-,118403050^"; structure "0,1^2-"; splice_chain ",118402914^118403050-"; psi "0.794200";
chr11	juncbase	intron_retention	118402316	118402490	.	-	.	gene_id "intron_retention.829"; transcript_id "intron_retention.829"; gene_name "CUFF.1975"; flanks "118402316-,118402490^"; structure "0,1^2-"; splice_chain ",118402316^118402490-"; psi "0.125000";
chr20	juncbase	jcn_only_AD	33589329	33589751	.	-	.	gene_id "jcn_only_AD.851"; transcript_id "jcn_only_AD.851"; gene_name "CUFF.1975"; flanks "33589329-,33589751-"; structure "1^,2^"; splice_chain "33589329^,33589395^"; psi "0.922900";
chr7	juncbase	intron_retention	156471771	156469318	.	-	.	gene_id "intron_retention.830"; transcript_id "intron_retention.830"; gene_name "CUFF.1975"; flanks "156471771-,156469318^"; structure "0,1^2-"; splice_chain ",156471771^156469318-"; psi "0.786900";
chr9	juncbase	jcn_only_AA	116779064	116791190	.	-	.	gene_id "jcn_only_AA.692"; transcript_id "jcn_only_AA.692"; gene_name "CUFF.1975"; flanks "116779064^,116791190^"; structure "1-,2-"; splice_chain "116791013-,116791190-"; psi "0.773700";
chr17	juncbase	intron_retention	1616997	1616198	.	-	.	gene_id "intron_retention.831"; transcript_id "intron_retention.831"; gene_name "CUFF.1975"; flanks "1616997-,1616198^"; structure "0,1^2-"; splice_chain ",1616997^1616198-"; psi "0.374400";
chr10	juncbase	jcn_only_AD	96954434	96961742	.	-	.	gene_id "jcn_only_AD.852"; transcript_id "jcn_only_AD.852"; gene_name "CUFF.1975"; flanks "96954434-,96961742-"; structure "1^,2^"; splice_chain "96954434^,96961278^"; psi "0.958400";
chr4	juncbase	cassette	20490605	20493384	.	-	.	gene_id "cassette.630"; transcript_id "cassette.630"; gene_name "CUFF.1975"; flanks "20490605^,20493384-"; structure "0,1-2^"; splice_chain ",20492426-20492437^"; psi "0.875000";
chr9	juncbase	cassette	139744589	139745207	.	-	.	gene_id "cassette.631"; transcript_id "cassette.631"; gene_name "CUFF.1975"; flanks "139744589^,139745207-"; structure "0,1-2^"; splice_chain ",139744958-139745012^"; psi "0.387700";
chr8	juncbase	jcn_only_AA	56668803	56663716	.	-	.	gene_id "jcn_only_AA.693"; transcript_id "jcn_only_AA.693"; gene_name "CUFF.1975"; flanks "56668803^,56663716^"; structure "1-,2-"; splice_chain "56664105-,56663716-"; psi "0.749300";
chr1	juncbase	intron_retention	145578295	145578401	.	-	.	gene_id "intron_retention.832"; transcript_id "intron_retention.832"; gene_name "CUFF.1975"; flanks "145578295-,145578401^"; structure "0,1^2-"; splice_chain ",145578295^145578401-"; psi "0.620300";
chr19	juncbase	cassette	14866466	14863338	.	-	.	gene_id "cassette.632"; transcript_id "cassette.632"; gene_name "CUFF.1975"; flanks "14866466^,14863338-"; structure "0,1-2^"; splice_chain ",14865939-14865766^"; psi "0.867300";
chr19	juncbase	cassette	14867050	14863338	.	-	.	gene_id "cassette.633"; transcript_id "cassette.633"; gene_name "CUFF.1975"; flanks "14867050^,14863338-"; structure "0,1-2^"; splice_chain ",14865939-14865766^"; psi "0.867300";
chr4	juncbase	jcn_only_AA	74477448	74464435	.	-	.	gene_id "jcn_only_AA.694"; transcript_id "jcn_only_AA.694"; gene_name "CUFF.1975"; flanks "74477448^,74464435^"; structure "1-,2-"; splice_chain "74470304-,74464435-"; psi "0.514300";
chr17	juncbase	intron_retention	15587510	15586685	.	-	.	gene_id "intron_retention.833"; transcript_id "intron_retention.833"; gene_name "CUFF.1975"; flanks "15587510-,15586685^"; structure "0,1^2-"; splice_chain ",15587510^15586685-"; psi "0.602200";
chr5	juncbase	cassette	178050257	178045779	.	-	.	gene_id "cassette.634"; transcript_id "cassette.634"; gene_name "CUFF.1975"; flanks "178050257^,178045779-"; structure "0,1-2^"; splice_chain ",178046897-178046839^"; psi "0.504900";
chr19	juncbase	cassette	51537236	51534177	.	-	.	gene_id "cassette.635"; transcript_id "cassette.635"; gene_name "CUFF.1975"; flanks "51537236^,51534177-"; structure "0,1-2^"; splice_chain ",51535391-51535132^"; psi "0.352800";
chr17	juncbase	intron_retention	8648147	8648038	.	-	.	gene_id "intron_retention.834"; transcript_id "intron_retention.834"; gene_name "CUFF.1975"; flanks "8648147-,8648038^"; structure "0,1^2-"; splice_chain ",8648147^8648038-"; psi "0.581100";
chr12	juncbase	cassette	4653077	4657258	.	-	.	gene_id "cassette.636"; transcript_id "cassette.636"; gene_name "CUFF.1975"; flanks "4653077^,4657258-"; structure "0,1-2^"; splice_chain ",4655475-4655584^"; psi "0.440800";
chr12	juncbase	cassette	4653070	4657258	.	-	.	gene_id "cassette.637"; transcript_id "cassette.637"; gene_name "CUFF.1975"; flanks "4653070^,4657258-"; structure "0,1-2^"; splice_chain ",4655475-4655584^"; psi "0.440800";
chr3	juncbase	intron_retention	125725957	125725407	.	-	.	gene_id "intron_retention.835"; transcript_id "intron_retention.835"; gene_name "CUFF.1975"; flanks "125725957-,125725407^"; structure "0,1^2-"; splice_chain ",125725957^125725407-"; psi "0.585300";
chr1	juncbase	jcn_only_AA	70820790	70832127	.	-	.	gene_id "jcn_only_AA.695"; transcript_id "jcn_only_AA.695"; gene_name "CUFF.1975"; flanks "70820790^,70832127^"; structure "1-,2-"; splice_chain "70831829-,70832127-"; psi "0.869800";
chr22	juncbase	jcn_only_AD	21823351	21823563	.	-	.	gene_id "jcn_only_AD.853"; transcript_id "jcn_only_AD.853"; gene_name "CUFF.1975"; flanks "21823351-,21823563-"; structure "1^,2^"; splice_chain "21823351^,21823483^"; psi "0.666700";
chr6	juncbase	jcn_only_AD	90218677	90276553	.	-	.	gene_id "jcn_only_AD.854"; transcript_id "jcn_only_AD.854"; gene_name "CUFF.1975"; flanks "90218677-,90276553-"; structure "1^,2^"; splice_chain "90218677^,90218968^"; psi "0.811146";
chr6	juncbase	jcn_only_AD	90193277	90276553	.	-	.	gene_id "jcn_only_AD.855"; transcript_id "jcn_only_AD.855"; gene_name "CUFF.1975"; flanks "90193277-,90276553-"; structure "1^,2^"; splice_chain "90193277^,90218968^"; psi "0.400000";
chr5	juncbase	jcn_only_AD	54415641	54410146	.	-	.	gene_id "jcn_only_AD.856"; transcript_id "jcn_only_AD.856"; gene_name "CUFF.1975"; flanks "54415641-,54410146-"; structure "1^,2^"; splice_chain "54415641^,54415629^"; psi "0.201600";
chr11	juncbase	jcn_only_AD	36397708	36440805	.	-	.	gene_id "jcn_only_AD.857"; transcript_id "jcn_only_AD.857"; gene_name "CUFF.1975"; flanks "36397708-,36440805-"; structure "1^,2^"; splice_chain "36397708^,36424928^"; psi "0.024100";
chr12	juncbase	jcn_only_AD	48383011	48381492	.	-	.	gene_id "jcn_only_AD.858"; transcript_id "jcn_only_AD.858"; gene_name "CUFF.1975"; flanks "48383011-,48381492-"; structure "1^,2^"; splice_chain "48383011^,48382209^"; psi "0.925000";
chrX	juncbase	intron_retention	153608379	153608594	.	-	.	gene_id "intron_retention.836"; transcript_id "intron_retention.836"; gene_name "CUFF.1975"; flanks "153608379-,153608594^"; structure "0,1^2-"; splice_chain ",153608379^153608594-"; psi "0.024900";
chr19	juncbase	jcn_only_AD	52264483	52271898	.	-	.	gene_id "jcn_only_AD.859"; transcript_id "jcn_only_AD.859"; gene_name "CUFF.1975"; flanks "52264483-,52271898-"; structure "1^,2^"; splice_chain "52264483^,52265788^"; psi "0.839561";
chr19	juncbase	jcn_only_AD	17445920	17448817	.	-	.	gene_id "jcn_only_AD.860"; transcript_id "jcn_only_AD.860"; gene_name "CUFF.1975"; flanks "17445920-,17448817-"; structure "1^,2^"; splice_chain "17445920^,17448456^"; psi "0.596306";
chr19	juncbase	jcn_only_AD	17448385	17448817	.	-	.	gene_id "jcn_only_AD.861"; transcript_id "jcn_only_AD.861"; gene_name "CUFF.1975"; flanks "17448385-,17448817-"; structure "1^,2^"; splice_chain "17448385^,17448456^"; psi "0.914382";
chr19	juncbase	jcn_only_AD	17447843	17448817	.	-	.	gene_id "jcn_only_AD.862"; transcript_id "jcn_only_AD.862"; gene_name "CUFF.1975"; flanks "17447843-,17448817-"; structure "1^,2^"; splice_chain "17447843^,17448456^"; psi "0.945802";
chr19	juncbase	jcn_only_AD	17448078	17448817	.	-	.	gene_id "jcn_only_AD.863"; transcript_id "jcn_only_AD.863"; gene_name "CUFF.1975"; flanks "17448078-,17448817-"; structure "1^,2^"; splice_chain "17448078^,17448456^"; psi "0.907998";
chr19	juncbase	jcn_only_AD	17447966	17448817	.	-	.	gene_id "jcn_only_AD.864"; transcript_id "jcn_only_AD.864"; gene_name "CUFF.1975"; flanks "17447966-,17448817-"; structure "1^,2^"; splice_chain "17447966^,17448456^"; psi "0.365145";
chr2	juncbase	cassette	200496618	200512397	.	-	.	gene_id "cassette.638"; transcript_id "cassette.638"; gene_name "CUFF.1975"; flanks "200496618^,200512397-"; structure "0,1-2^"; splice_chain ",200511777-200511902^"; psi "0.846200";
chr10	juncbase	jcn_only_AA	78832855	78799395	.	-	.	gene_id "jcn_only_AA.696"; transcript_id "jcn_only_AA.696"; gene_name "CUFF.1975"; flanks "78832855^,78799395^"; structure "1-,2-"; splice_chain "78823901-,78799395-"; psi "0.775318";
chr2	juncbase	jcn_only_AA	27668612	27668316	.	-	.	gene_id "jcn_only_AA.697"; transcript_id "jcn_only_AA.697"; gene_name "CUFF.1975"; flanks "27668612^,27668316^"; structure "1-,2-"; splice_chain "27668496-,27668316-"; psi "0.889300";
chr16	juncbase	intron_retention	23507035	23505699	.	-	.	gene_id "intron_retention.837"; transcript_id "intron_retention.837"; gene_name "CUFF.1975"; flanks "23507035-,23505699^"; structure "0,1^2-"; splice_chain ",23507035^23505699-"; psi "0.402400";
chr13	juncbase	jcn_only_AA	24432999	24415627	.	-	.	gene_id "jcn_only_AA.698"; transcript_id "jcn_only_AA.698"; gene_name "CUFF.1975"; flanks "24432999^,24415627^"; structure "1-,2-"; splice_chain "24416708-,24415627-"; psi "0.054300";
chr1	juncbase	jcn_only_AA	32560572	32566043	.	-	.	gene_id "jcn_only_AA.699"; transcript_id "jcn_only_AA.699"; gene_name "CUFF.1975"; flanks "32560572^,32566043^"; structure "1-,2-"; splice_chain "32561261-,32566043-"; psi "0.966400";
chr10	juncbase	jcn_only_AA	35495979	35500584	.	-	.	gene_id "jcn_only_AA.700"; transcript_id "jcn_only_AA.700"; gene_name "CUFF.1975"; flanks "35495979^,35500584^"; structure "1-,2-"; splice_chain "35500182-,35500584-"; psi "0.763200";
chr16	juncbase	cassette	3118011	3118991	.	-	.	gene_id "cassette.639"; transcript_id "cassette.639"; gene_name "CUFF.1975"; flanks "3118011^,3118991-"; structure "0,1-2^"; splice_chain ",3118181-3118240^"; psi "0.952300";
chr16	juncbase	cassette	67233904	67234354	.	-	.	gene_id "cassette.640"; transcript_id "cassette.640"; gene_name "CUFF.1975"; flanks "67233904^,67234354-"; structure "0,1-2^"; splice_chain ",67234095-67234264^"; psi "0.945600";
chr22	juncbase	cassette	47158745	47189398	.	-	.	gene_id "cassette.641"; transcript_id "cassette.641"; gene_name "CUFF.1975"; flanks "47158745^,47189398-"; structure "0,1-2^"; splice_chain ",47188417-47188473^"; psi "0.836000";
chr19	juncbase	jcn_only_AA	54657577	54659047	.	-	.	gene_id "jcn_only_AA.701"; transcript_id "jcn_only_AA.701"; gene_name "CUFF.1975"; flanks "54657577^,54659047^"; structure "1-,2-"; splice_chain "54658996-,54659047-"; psi "0.873938";
chr17	juncbase	intron_retention	1617150	1615693	.	-	.	gene_id "intron_retention.838"; transcript_id "intron_retention.838"; gene_name "CUFF.1975"; flanks "1617150-,1615693^"; structure "0,1^2-"; splice_chain ",1617150^1615693-"; psi "0.893100";
chr10	juncbase	intron_retention	69921509	69925459	.	-	.	gene_id "intron_retention.839"; transcript_id "intron_retention.839"; gene_name "CUFF.1975"; flanks "69921509-,69925459^"; structure "0,1^2-"; splice_chain ",69921509^69925459-"; psi "0.480000";
chr12	juncbase	jcn_only_AD	344256	332400	.	-	.	gene_id "jcn_only_AD.865"; transcript_id "jcn_only_AD.865"; gene_name "CUFF.1975"; flanks "344256-,332400-"; structure "1^,2^"; splice_chain "344256^,332912^"; psi "0.433254";
chr12	juncbase	jcn_only_AD	333158	332400	.	-	.	gene_id "jcn_only_AD.866"; transcript_id "jcn_only_AD.866"; gene_name "CUFF.1975"; flanks "333158-,332400-"; structure "1^,2^"; splice_chain "333158^,332912^"; psi "0.838818";
chr10	juncbase	intron_retention	73975965	73973109	.	-	.	gene_id "intron_retention.840"; transcript_id "intron_retention.840"; gene_name "CUFF.1975"; flanks "73975965-,73973109^"; structure "0,1^2-"; splice_chain ",73975965^73973109-"; psi "0.260400";
chr7	juncbase	jcn_only_AD	156685622	156619438	.	-	.	gene_id "jcn_only_AD.867"; transcript_id "jcn_only_AD.867"; gene_name "CUFF.1975"; flanks "156685622-,156619438-"; structure "1^,2^"; splice_chain "156685622^,156626433^"; psi "0.741137";
chr7	juncbase	jcn_only_AD	156626447	156619438	.	-	.	gene_id "jcn_only_AD.868"; transcript_id "jcn_only_AD.868"; gene_name "CUFF.1975"; flanks "156626447-,156619438-"; structure "1^,2^"; splice_chain "156626447^,156626433^"; psi "0.809215";
chr7	juncbase	jcn_only_AA	1781845	1778838	.	-	.	gene_id "jcn_only_AA.702"; transcript_id "jcn_only_AA.702"; gene_name "CUFF.1975"; flanks "1781845^,1778838^"; structure "1-,2-"; splice_chain "1779171-,1778838-"; psi "0.228400";
chr16	juncbase	cassette	14031715	14038580	.	-	.	gene_id "cassette.642"; transcript_id "cassette.642"; gene_name "CUFF.1975"; flanks "14031715^,14038580-"; structure "0,1-2^"; splice_chain ",14037831-14037952^"; psi "0.770700";
chr3	juncbase	intron_retention	38051144	38050922	.	-	.	gene_id "intron_retention.841"; transcript_id "intron_retention.841"; gene_name "CUFF.1975"; flanks "38051144-,38050922^"; structure "0,1^2-"; splice_chain ",38051144^38050922-"; psi "0.169600";
chr9	juncbase	jcn_only_AD	43907537	43908436	.	-	.	gene_id "jcn_only_AD.869"; transcript_id "jcn_only_AD.869"; gene_name "CUFF.1975"; flanks "43907537-,43908436-"; structure "1^,2^"; splice_chain "43907537^,43908210^"; psi "0.304300";
chrX	juncbase	cassette	47028897	47032527	.	-	.	gene_id "cassette.643"; transcript_id "cassette.643"; gene_name "CUFF.1975"; flanks "47028897^,47032527-"; structure "0,1-2^"; splice_chain ",47030427-47030657^"; psi "0.115400";
chr16	juncbase	jcn_only_AA	21737979	21739562	.	-	.	gene_id "jcn_only_AA.703"; transcript_id "jcn_only_AA.703"; gene_name "CUFF.1975"; flanks "21737979^,21739562^"; structure "1-,2-"; splice_chain "21738433-,21739562-"; psi "0.979800";
chr2	juncbase	cassette	4021135	4008146	.	-	.	gene_id "cassette.644"; transcript_id "cassette.644"; gene_name "CUFF.1975"; flanks "4021135^,4008146-"; structure "0,1-2^"; splice_chain ",4009484-4009360^"; psi "0.947700";
chr7	juncbase	jcn_only_AA	6631498	6634066	.	-	.	gene_id "jcn_only_AA.704"; transcript_id "jcn_only_AA.704"; gene_name "CUFF.1975"; flanks "6631498^,6634066^"; structure "1-,2-"; splice_chain "6634043-,6634066-"; psi "0.823500";
chr8	juncbase	intron_retention	38002740	38001904	.	-	.	gene_id "intron_retention.842"; transcript_id "intron_retention.842"; gene_name "CUFF.1975"; flanks "38002740-,38001904^"; structure "0,1^2-"; splice_chain ",38002740^38001904-"; psi "0.607100";
chr15	juncbase	jcn_only_AD	29347038	29367124	.	-	.	gene_id "jcn_only_AD.870"; transcript_id "jcn_only_AD.870"; gene_name "CUFF.1975"; flanks "29347038-,29367124-"; structure "1^,2^"; splice_chain "29347038^,29363302^"; psi "0.888900";
chr3	juncbase	intron_retention	28357914	28361000	.	-	.	gene_id "intron_retention.843"; transcript_id "intron_retention.843"; gene_name "CUFF.1975"; flanks "28357914-,28361000^"; structure "0,1^2-"; splice_chain ",28357914^28361000-"; psi "0.324400";
chr2	juncbase	jcn_only_AD	191302287	191334484	.	-	.	gene_id "jcn_only_AD.871"; transcript_id "jcn_only_AD.871"; gene_name "CUFF.1975"; flanks "191302287-,191334484-"; structure "1^,2^"; splice_chain "191302287^,191307731^"; psi "0.200025";
chr20	juncbase	jcn_only_AD	33114148	33122432	.	-	.	gene_id "jcn_only_AD.872"; transcript_id "jcn_only_AD.872"; gene_name "CUFF.1975"; flanks "33114148-,33122432-"; structure "1^,2^"; splice_chain "33114148^,33118038^"; psi "0.956400";
chr11	juncbase	jcn_only_AA	8498797	8496613	.	-	.	gene_id "jcn_only_AA.705"; transcript_id "jcn_only_AA.705"; gene_name "CUFF.1975"; flanks "8498797^,8496613^"; structure "1-,2-"; splice_chain "8498298-,8496613-"; psi "0.562500";
chr9	juncbase	jcn_only_AD	131486273	131484853	.	-	.	gene_id "jcn_only_AD.873"; transcript_id "jcn_only_AD.873"; gene_name "CUFF.1975"; flanks "131486273-,131484853-"; structure "1^,2^"; splice_chain "131486273^,131486231^"; psi "0.893800";
chr4	juncbase	intron_retention	2934833	2934485	.	-	.	gene_id "intron_retention.844"; transcript_id "intron_retention.844"; gene_name "CUFF.1975"; flanks "2934833-,2934485^"; structure "0,1^2-"; splice_chain ",2934833^2934485-"; psi "0.155400";
chr17	juncbase	cassette	79892529	79891252	.	-	.	gene_id "cassette.645"; transcript_id "cassette.645"; gene_name "CUFF.1975"; flanks "79892529^,79891252-"; structure "0,1-2^"; splice_chain ",79892365-79892202^"; psi "0.743700";
chr17	juncbase	cassette	79892802	79891252	.	-	.	gene_id "cassette.646"; transcript_id "cassette.646"; gene_name "CUFF.1975"; flanks "79892802^,79891252-"; structure "0,1-2^"; splice_chain ",79892365-79892202^"; psi "0.743700";
chr11	juncbase	intron_retention	62365799	62365613	.	-	.	gene_id "intron_retention.845"; transcript_id "intron_retention.845"; gene_name "CUFF.1975"; flanks "62365799-,62365613^"; structure "0,1^2-"; splice_chain ",62365799^62365613-"; psi "0.554700";
chr2	juncbase	intron_retention	220094702	220094950	.	-	.	gene_id "intron_retention.846"; transcript_id "intron_retention.846"; gene_name "CUFF.1975"; flanks "220094702-,220094950^"; structure "0,1^2-"; splice_chain ",220094702^220094950-"; psi "0.691800";
chr11	juncbase	jcn_only_AA	75522469	75514562	.	-	.	gene_id "jcn_only_AA.706"; transcript_id "jcn_only_AA.706"; gene_name "CUFF.1975"; flanks "75522469^,75514562^"; structure "1-,2-"; splice_chain "75514770-,75514562-"; psi "0.524032";
chr14	juncbase	intron_retention	52485963	52481980	.	-	.	gene_id "intron_retention.847"; transcript_id "intron_retention.847"; gene_name "CUFF.1975"; flanks "52485963-,52481980^"; structure "0,1^2-"; splice_chain ",52485963^52481980-"; psi "0.608700";
chr16	juncbase	jcn_only_AD	70274910	70268195	.	-	.	gene_id "jcn_only_AD.874"; transcript_id "jcn_only_AD.874"; gene_name "CUFF.1975"; flanks "70274910-,70268195-"; structure "1^,2^"; splice_chain "70274910^,70268900^"; psi "0.047600";
chr11	juncbase	intron_retention	6640427	6640146	.	-	.	gene_id "intron_retention.848"; transcript_id "intron_retention.848"; gene_name "CUFF.1975"; flanks "6640427-,6640146^"; structure "0,1^2-"; splice_chain ",6640427^6640146-"; psi "0.314200";
chr3	juncbase	jcn_only_AA	122843190	122864369	.	-	.	gene_id "jcn_only_AA.707"; transcript_id "jcn_only_AA.707"; gene_name "CUFF.1975"; flanks "122843190^,122864369^"; structure "1-,2-"; splice_chain "122849327-,122864369-"; psi "0.442600";
chr6	juncbase	jcn_only_AA	43484465	43483833	.	-	.	gene_id "jcn_only_AA.708"; transcript_id "jcn_only_AA.708"; gene_name "CUFF.1975"; flanks "43484465^,43483833^"; structure "1-,2-"; splice_chain "43483851-,43483833-"; psi "0.668979";
chr6	juncbase	jcn_only_AA	43484465	43483784	.	-	.	gene_id "jcn_only_AA.709"; transcript_id "jcn_only_AA.709"; gene_name "CUFF.1975"; flanks "43484465^,43483784^"; structure "1-,2-"; splice_chain "43483851-,43483784-"; psi "0.790333";
chr1	juncbase	jcn_only_AD	32541855	32542364	.	-	.	gene_id "jcn_only_AD.875"; transcript_id "jcn_only_AD.875"; gene_name "CUFF.1975"; flanks "32541855-,32542364-"; structure "1^,2^"; splice_chain "32541855^,32542247^"; psi "0.206900";
chr11	juncbase	intron_retention	2187710	2187288	.	-	.	gene_id "intron_retention.849"; transcript_id "intron_retention.849"; gene_name "CUFF.1975"; flanks "2187710-,2187288^"; structure "0,1^2-"; splice_chain ",2187710^2187288-"; psi "0.086700";
chr12	juncbase	jcn_only_AD	102813287	102796344	.	-	.	gene_id "jcn_only_AD.876"; transcript_id "jcn_only_AD.876"; gene_name "CUFF.1975"; flanks "102813287-,102796344-"; structure "1^,2^"; splice_chain "102813287^,102811733^"; psi "0.242079";
chr12	juncbase	jcn_only_AD	56709605	56709026	.	-	.	gene_id "jcn_only_AD.877"; transcript_id "jcn_only_AD.877"; gene_name "CUFF.1975"; flanks "56709605-,56709026-"; structure "1^,2^"; splice_chain "56709605^,56709501^"; psi "0.936410";
chr12	juncbase	jcn_only_AD	56709691	56709026	.	-	.	gene_id "jcn_only_AD.878"; transcript_id "jcn_only_AD.878"; gene_name "CUFF.1975"; flanks "56709691-,56709026-"; structure "1^,2^"; splice_chain "56709691^,56709501^"; psi "0.743908";
chr14	juncbase	jcn_only_AD	81893446	81864924	.	-	.	gene_id "jcn_only_AD.879"; transcript_id "jcn_only_AD.879"; gene_name "CUFF.1975"; flanks "81893446-,81864924-"; structure "1^,2^"; splice_chain "81893446^,81884507^"; psi "0.403500";
chr3	juncbase	jcn_only_AA	126139072	126142168	.	-	.	gene_id "jcn_only_AA.710"; transcript_id "jcn_only_AA.710"; gene_name "CUFF.1975"; flanks "126139072^,126142168^"; structure "1-,2-"; splice_chain "126139473-,126142168-"; psi "0.640600";
chr1	juncbase	jcn_only_AA	200860530	200867520	.	-	.	gene_id "jcn_only_AA.711"; transcript_id "jcn_only_AA.711"; gene_name "CUFF.1975"; flanks "200860530^,200867520^"; structure "1-,2-"; splice_chain "200867435-,200867520-"; psi "0.689300";
chr2	juncbase	jcn_only_AD	207989068	207953305	.	-	.	gene_id "jcn_only_AD.880"; transcript_id "jcn_only_AD.880"; gene_name "CUFF.1975"; flanks "207989068-,207953305-"; structure "1^,2^"; splice_chain "207989068^,207988700^"; psi "0.926927";
chr10	juncbase	cassette	70679737	70695762	.	-	.	gene_id "cassette.647"; transcript_id "cassette.647"; gene_name "CUFF.1975"; flanks "70679737^,70695762-"; structure "0,1-2^"; splice_chain ",70694555-70694674^"; psi "0.855700";
chr16	juncbase	jcn_only_AA	23505624	23504779	.	-	.	gene_id "jcn_only_AA.712"; transcript_id "jcn_only_AA.712"; gene_name "CUFF.1975"; flanks "23505624^,23504779^"; structure "1-,2-"; splice_chain "23504842-,23504779-"; psi "0.825695";
chr17	juncbase	jcn_only_AD	79481573	79479386	.	-	.	gene_id "jcn_only_AD.881"; transcript_id "jcn_only_AD.881"; gene_name "CUFF.1975"; flanks "79481573-,79479386-"; structure "1^,2^"; splice_chain "79481573^,79479641^"; psi "0.394484";
chr17	juncbase	jcn_only_AD	79490668	79479386	.	-	.	gene_id "jcn_only_AD.882"; transcript_id "jcn_only_AD.882"; gene_name "CUFF.1975"; flanks "79490668-,79479386-"; structure "1^,2^"; splice_chain "79490668^,79479641^"; psi "0.875554";
chr17	juncbase	jcn_only_AD	79479760	79479386	.	-	.	gene_id "jcn_only_AD.883"; transcript_id "jcn_only_AD.883"; gene_name "CUFF.1975"; flanks "79479760-,79479386-"; structure "1^,2^"; splice_chain "79479760^,79479641^"; psi "0.912113";
chr12	juncbase	cassette	58018939	58019193	.	-	.	gene_id "cassette.648"; transcript_id "cassette.648"; gene_name "CUFF.1975"; flanks "58018939^,58019193-"; structure "0,1-2^"; splice_chain ",58019019-58019101^"; psi "0.965500";
chr2	juncbase	intron_retention	101604738	101606718	.	-	.	gene_id "intron_retention.850"; transcript_id "intron_retention.850"; gene_name "CUFF.1975"; flanks "101604738-,101606718^"; structure "0,1^2-"; splice_chain ",101604738^101606718-"; psi "0.034000";
chr19	juncbase	intron_retention	18119927	18120401	.	-	.	gene_id "intron_retention.851"; transcript_id "intron_retention.851"; gene_name "CUFF.1975"; flanks "18119927-,18120401^"; structure "0,1^2-"; splice_chain ",18119927^18120401-"; psi "0.340800";
chr3	juncbase	jcn_only_AD	107596160	107586272	.	-	.	gene_id "jcn_only_AD.884"; transcript_id "jcn_only_AD.884"; gene_name "CUFF.1975"; flanks "107596160-,107586272-"; structure "1^,2^"; splice_chain "107596160^,107594977^"; psi "0.741087";
chr18	juncbase	cassette	57115215	57106810	.	-	.	gene_id "cassette.649"; transcript_id "cassette.649"; gene_name "CUFF.1975"; flanks "57115215^,57106810-"; structure "0,1-2^"; splice_chain ",57107048-57106909^"; psi "0.136400";
chrX	juncbase	intron_retention	85282495	85118099	.	-	.	gene_id "intron_retention.852"; transcript_id "intron_retention.852"; gene_name "CUFF.1975"; flanks "85282495-,85118099^"; structure "0,1^2-"; splice_chain ",85282495^85118099-"; psi "0.700000";
chr18	juncbase	cassette	180339	196637	.	-	.	gene_id "cassette.650"; transcript_id "cassette.650"; gene_name "CUFF.1975"; flanks "180339^,196637-"; structure "0,1-2^"; splice_chain ",192842-192900^"; psi "0.541700";
chr5	juncbase	intron_retention	178050257	178049460	.	-	.	gene_id "intron_retention.853"; transcript_id "intron_retention.853"; gene_name "CUFF.1975"; flanks "178050257-,178049460^"; structure "0,1^2-"; splice_chain ",178050257^178049460-"; psi "0.587300";
chr9	juncbase	jcn_only_AA	130947826	130943078	.	-	.	gene_id "jcn_only_AA.713"; transcript_id "jcn_only_AA.713"; gene_name "CUFF.1975"; flanks "130947826^,130943078^"; structure "1-,2-"; splice_chain "130943093-,130943078-"; psi "0.084700";
chr11	juncbase	intron_retention	2905900	2905364	.	-	.	gene_id "intron_retention.854"; transcript_id "intron_retention.854"; gene_name "CUFF.1975"; flanks "2905900-,2905364^"; structure "0,1^2-"; splice_chain ",2905900^2905364-"; psi "0.073500";
chr11	juncbase	jcn_only_AA	830713	831224	.	-	.	gene_id "jcn_only_AA.714"; transcript_id "jcn_only_AA.714"; gene_name "CUFF.1975"; flanks "830713^,831224^"; structure "1-,2-"; splice_chain "830866-,831224-"; psi "0.684400";
chr19	juncbase	jcn_only_AA	54648068	54649331	.	-	.	gene_id "jcn_only_AA.715"; transcript_id "jcn_only_AA.715"; gene_name "CUFF.1975"; flanks "54648068^,54649331^"; structure "1-,2-"; splice_chain "54649278-,54649331-"; psi "0.184608";
chr19	juncbase	jcn_only_AA	54648068	54649334	.	-	.	gene_id "jcn_only_AA.716"; transcript_id "jcn_only_AA.716"; gene_name "CUFF.1975"; flanks "54648068^,54649334^"; structure "1-,2-"; splice_chain "54649278-,54649334-"; psi "0.417604";
chr3	juncbase	cassette	25660145	25657077	.	-	.	gene_id "cassette.651"; transcript_id "cassette.651"; gene_name "CUFF.1975"; flanks "25660145^,25657077-"; structure "0,1-2^"; splice_chain ",25660000-25659909^"; psi "0.899700";
chr6	juncbase	intron_retention	31935896	31936105	.	-	.	gene_id "intron_retention.855"; transcript_id "intron_retention.855"; gene_name "CUFF.1975"; flanks "31935896-,31936105^"; structure "0,1^2-"; splice_chain ",31935896^31936105-"; psi "0.291500";
chr19	juncbase	jcn_only_AA	1438891	1440018	.	-	.	gene_id "jcn_only_AA.717"; transcript_id "jcn_only_AA.717"; gene_name "CUFF.1975"; flanks "1438891^,1440018^"; structure "1-,2-"; splice_chain "1439715-,1440018-"; psi "0.913537";
chr19	juncbase	jcn_only_AA	1438891	1439960	.	-	.	gene_id "jcn_only_AA.718"; transcript_id "jcn_only_AA.718"; gene_name "CUFF.1975"; flanks "1438891^,1439960^"; structure "1-,2-"; splice_chain "1439715-,1439960-"; psi "0.225734";
chr19	juncbase	jcn_only_AA	1438891	1440025	.	-	.	gene_id "jcn_only_AA.719"; transcript_id "jcn_only_AA.719"; gene_name "CUFF.1975"; flanks "1438891^,1440025^"; structure "1-,2-"; splice_chain "1439715-,1440025-"; psi "0.333333";
chr19	juncbase	jcn_only_AA	1438891	1439967	.	-	.	gene_id "jcn_only_AA.720"; transcript_id "jcn_only_AA.720"; gene_name "CUFF.1975"; flanks "1438891^,1439967^"; structure "1-,2-"; splice_chain "1439715-,1439967-"; psi "0.669079";
chrX	juncbase	intron_retention	9001000	9000502	.	-	.	gene_id "intron_retention.856"; transcript_id "intron_retention.856"; gene_name "CUFF.1975"; flanks "9001000-,9000502^"; structure "0,1^2-"; splice_chain ",9001000^9000502-"; psi "0.188100";
chr16	juncbase	jcn_only_AD	70380951	70384460	.	-	.	gene_id "jcn_only_AD.885"; transcript_id "jcn_only_AD.885"; gene_name "CUFF.1975"; flanks "70380951-,70384460-"; structure "1^,2^"; splice_chain "70380951^,70381893^"; psi "0.823100";
chr7	juncbase	cassette	36934459	36917722	.	-	.	gene_id "cassette.652"; transcript_id "cassette.652"; gene_name "CUFF.1975"; flanks "36934459^,36917722-"; structure "0,1-2^"; splice_chain ",36927277-36927165^"; psi "0.898400";
chr2	juncbase	jcn_only_AA	175243651	175223264	.	-	.	gene_id "jcn_only_AA.721"; transcript_id "jcn_only_AA.721"; gene_name "CUFF.1975"; flanks "175243651^,175223264^"; structure "1-,2-"; splice_chain "175234742-,175223264-"; psi "0.781831";
chr2	juncbase	jcn_only_AA	175243651	175216453	.	-	.	gene_id "jcn_only_AA.722"; transcript_id "jcn_only_AA.722"; gene_name "CUFF.1975"; flanks "175243651^,175216453^"; structure "1-,2-"; splice_chain "175234742-,175216453-"; psi "0.478336";
chr17	juncbase	intron_retention	25974144	25974296	.	-	.	gene_id "intron_retention.857"; transcript_id "intron_retention.857"; gene_name "CUFF.1975"; flanks "25974144-,25974296^"; structure "0,1^2-"; splice_chain ",25974144^25974296-"; psi "0.048200";
chr18	juncbase	intron_retention	44272132	44268830	.	-	.	gene_id "intron_retention.858"; transcript_id "intron_retention.858"; gene_name "CUFF.1975"; flanks "44272132-,44268830^"; structure "0,1^2-"; splice_chain ",44272132^44268830-"; psi "0.910400";
chr22	juncbase	intron_retention	21058328	21058476	.	-	.	gene_id "intron_retention.859"; transcript_id "intron_retention.859"; gene_name "CUFF.1975"; flanks "21058328-,21058476^"; structure "0,1^2-"; splice_chain ",21058328^21058476-"; psi "0.066700";
chr20	juncbase	intron_retention	33588961	33589048	.	-	.	gene_id "intron_retention.860"; transcript_id "intron_retention.860"; gene_name "CUFF.1975"; flanks "33588961-,33589048^"; structure "0,1^2-"; splice_chain ",33588961^33589048-"; psi "0.970900";
chr17	juncbase	cassette	80441655	80443373	.	-	.	gene_id "cassette.653"; transcript_id "cassette.653"; gene_name "CUFF.1975"; flanks "80441655^,80443373-"; structure "0,1-2^"; splice_chain ",80442689-80442826^"; psi "0.909500";
chr7	juncbase	jcn_only_AD	107253877	107258773	.	-	.	gene_id "jcn_only_AD.886"; transcript_id "jcn_only_AD.886"; gene_name "CUFF.1975"; flanks "107253877-,107258773-"; structure "1^,2^"; splice_chain "107253877^,107254177^"; psi "0.808600";
chr7	juncbase	jcn_only_AD	73098134	73105246	.	-	.	gene_id "jcn_only_AD.887"; transcript_id "jcn_only_AD.887"; gene_name "CUFF.1975"; flanks "73098134-,73105246-"; structure "1^,2^"; splice_chain "73098134^,73101230^"; psi "0.061841";
chr12	juncbase	cassette	4662313	4668023	.	-	.	gene_id "cassette.654"; transcript_id "cassette.654"; gene_name "CUFF.1975"; flanks "4662313^,4668023-"; structure "0,1-2^"; splice_chain ",4665519-4665668^"; psi "0.966700";
chr16	juncbase	cassette	19621737	19627436	.	-	.	gene_id "cassette.655"; transcript_id "cassette.655"; gene_name "CUFF.1975"; flanks "19621737^,19627436-"; structure "0,1-2^"; splice_chain ",19623050-19623120^"; psi "0.766400";
chr11	juncbase	cassette	107917096	107923387	.	-	.	gene_id "cassette.656"; transcript_id "cassette.656"; gene_name "CUFF.1975"; flanks "107917096^,107923387-"; structure "0,1-2^"; splice_chain ",107920617-107920793^"; psi "0.160000";
chr12	juncbase	intron_retention	69237044	69237521	.	-	.	gene_id "intron_retention.861"; transcript_id "intron_retention.861"; gene_name "CUFF.1975"; flanks "69237044-,69237521^"; structure "0,1^2-"; splice_chain ",69237044^69237521-"; psi "0.696600";
chr11	juncbase	jcn_only_AD	3427840	3428852	.	-	.	gene_id "jcn_only_AD.888"; transcript_id "jcn_only_AD.888"; gene_name "CUFF.1975"; flanks "3427840-,3428852-"; structure "1^,2^"; splice_chain "3427840^,3427945^"; psi "0.925200";
chr10	juncbase	jcn_only_AD	106937824	106959757	.	-	.	gene_id "jcn_only_AD.889"; transcript_id "jcn_only_AD.889"; gene_name "CUFF.1975"; flanks "106937824-,106959757-"; structure "1^,2^"; splice_chain "106937824^,106937931^"; psi "0.722200";
chr16	juncbase	jcn_only_AD	57513773	57513597	.	-	.	gene_id "jcn_only_AD.890"; transcript_id "jcn_only_AD.890"; gene_name "CUFF.1975"; flanks "57513773-,57513597-"; structure "1^,2^"; splice_chain "57513773^,57513757^"; psi "0.712182";
chr16	juncbase	jcn_only_AD	57517870	57513597	.	-	.	gene_id "jcn_only_AD.891"; transcript_id "jcn_only_AD.891"; gene_name "CUFF.1975"; flanks "57517870-,57513597-"; structure "1^,2^"; splice_chain "57517870^,57513757^"; psi "0.223715";
chr1	juncbase	jcn_only_AA	153925281	153925111	.	-	.	gene_id "jcn_only_AA.723"; transcript_id "jcn_only_AA.723"; gene_name "CUFF.1975"; flanks "153925281^,153925111^"; structure "1-,2-"; splice_chain "153925126-,153925111-"; psi "0.326900";
chr9	juncbase	jcn_only_AA	43853616	43861006	.	-	.	gene_id "jcn_only_AA.724"; transcript_id "jcn_only_AA.724"; gene_name "CUFF.1975"; flanks "43853616^,43861006^"; structure "1-,2-"; splice_chain "43861003-,43861006-"; psi "0.392401";
chr14	juncbase	cassette	59006854	59014499	.	-	.	gene_id "cassette.657"; transcript_id "cassette.657"; gene_name "CUFF.1975"; flanks "59006854^,59014499-"; structure "0,1-2^"; splice_chain ",59010601-59010685^"; psi "0.077500";
chr18	juncbase	cassette	44336341	44284627	.	-	.	gene_id "cassette.658"; transcript_id "cassette.658"; gene_name "CUFF.1975"; flanks "44336341^,44284627-"; structure "0,1-2^"; splice_chain ",44301432-44301325^"; psi "0.898100";
chr12	juncbase	intron_retention	53861627	53862561	.	-	.	gene_id "intron_retention.862"; transcript_id "intron_retention.862"; gene_name "CUFF.1975"; flanks "53861627-,53862561^"; structure "0,1^2-"; splice_chain ",53861627^53862561-"; psi "0.138700";
chr4	juncbase	jcn_only_AD	3949817	3945099	.	-	.	gene_id "jcn_only_AD.892"; transcript_id "jcn_only_AD.892"; gene_name "CUFF.1975"; flanks "3949817-,3945099-"; structure "1^,2^"; splice_chain "3949817^,3948871^"; psi "0.413067";
chr4	juncbase	jcn_only_AD	3954838	3945099	.	-	.	gene_id "jcn_only_AD.893"; transcript_id "jcn_only_AD.893"; gene_name "CUFF.1975"; flanks "3954838-,3945099-"; structure "1^,2^"; splice_chain "3954838^,3948871^"; psi "0.703248";
chr1	juncbase	intron_retention	11082307	11083250	.	-	.	gene_id "intron_retention.863"; transcript_id "intron_retention.863"; gene_name "CUFF.1975"; flanks "11082307-,11083250^"; structure "0,1^2-"; splice_chain ",11082307^11083250-"; psi "0.207800";
chr5	juncbase	jcn_only_AD	139909381	139916974	.	-	.	gene_id "jcn_only_AD.894"; transcript_id "jcn_only_AD.894"; gene_name "CUFF.1975"; flanks "139909381-,139916974-"; structure "1^,2^"; splice_chain "139909381^,139915123^"; psi "0.333300";
chr15	juncbase	intron_retention	64445585	64445851	.	-	.	gene_id "intron_retention.864"; transcript_id "intron_retention.864"; gene_name "CUFF.1975"; flanks "64445585-,64445851^"; structure "0,1^2-"; splice_chain ",64445585^64445851-"; psi "0.555600";
chr16	juncbase	intron_retention	70399034	70399836	.	-	.	gene_id "intron_retention.865"; transcript_id "intron_retention.865"; gene_name "CUFF.1975"; flanks "70399034-,70399836^"; structure "0,1^2-"; splice_chain ",70399034^70399836-"; psi "0.021500";
chr10	juncbase	jcn_only_AD	73972945	73970589	.	-	.	gene_id "jcn_only_AD.895"; transcript_id "jcn_only_AD.895"; gene_name "CUFF.1975"; flanks "73972945-,73970589-"; structure "1^,2^"; splice_chain "73972945^,73971946^"; psi "0.886400";
chr15	juncbase	intron_retention	41222880	41223701	.	-	.	gene_id "intron_retention.866"; transcript_id "intron_retention.866"; gene_name "CUFF.1975"; flanks "41222880-,41223701^"; structure "0,1^2-"; splice_chain ",41222880^41223701-"; psi "0.589500";
chr11	juncbase	intron_retention	406142	406059	.	-	.	gene_id "intron_retention.867"; transcript_id "intron_retention.867"; gene_name "CUFF.1975"; flanks "406142-,406059^"; structure "0,1^2-"; splice_chain ",406142^406059-"; psi "0.296100";
chrX	juncbase	jcn_only_AA	148863690	148867664	.	-	.	gene_id "jcn_only_AA.725"; transcript_id "jcn_only_AA.725"; gene_name "CUFF.1975"; flanks "148863690^,148867664^"; structure "1-,2-"; splice_chain "148867419-,148867664-"; psi "0.760900";
chr9	juncbase	intron_retention	130929374	130929159	.	-	.	gene_id "intron_retention.868"; transcript_id "intron_retention.868"; gene_name "CUFF.1975"; flanks "130929374-,130929159^"; structure "0,1^2-"; splice_chain ",130929374^130929159-"; psi "0.126200";
chr17	juncbase	intron_retention	79994735	79994639	.	-	.	gene_id "intron_retention.869"; transcript_id "intron_retention.869"; gene_name "CUFF.1975"; flanks "79994735-,79994639^"; structure "0,1^2-"; splice_chain ",79994735^79994639-"; psi "0.101400";
chr2	juncbase	intron_retention	242607636	242607955	.	-	.	gene_id "intron_retention.870"; transcript_id "intron_retention.870"; gene_name "CUFF.1975"; flanks "242607636-,242607955^"; structure "0,1^2-"; splice_chain ",242607636^242607955-"; psi "0.015400";
chr17	juncbase	cassette	79358929	79354384	.	-	.	gene_id "cassette.659"; transcript_id "cassette.659"; gene_name "CUFF.1975"; flanks "79358929^,79354384-"; structure "0,1-2^"; splice_chain ",79355740-79355677^"; psi "0.923300";
chr17	juncbase	cassette	79358746	79354384	.	-	.	gene_id "cassette.660"; transcript_id "cassette.660"; gene_name "CUFF.1975"; flanks "79358746^,79354384-"; structure "0,1-2^"; splice_chain ",79355740-79355677^"; psi "0.923300";
chr22	juncbase	jcn_only_AD	51020678	51020291	.	-	.	gene_id "jcn_only_AD.896"; transcript_id "jcn_only_AD.896"; gene_name "CUFF.1975"; flanks "51020678-,51020291-"; structure "1^,2^"; splice_chain "51020678^,51020458^"; psi "0.890900";
chr12	juncbase	intron_retention	77256956	77254193	.	-	.	gene_id "intron_retention.871"; transcript_id "intron_retention.871"; gene_name "CUFF.1975"; flanks "77256956-,77254193^"; structure "0,1^2-"; splice_chain ",77256956^77254193-"; psi "0.010500";
chr22	juncbase	cassette	20748952	20754922	.	-	.	gene_id "cassette.661"; transcript_id "cassette.661"; gene_name "CUFF.1975"; flanks "20748952^,20754922-"; structure "0,1-2^"; splice_chain ",20749623-20749708^"; psi "0.773600";
chr17	juncbase	jcn_only_AA	15586350	15584267	.	-	.	gene_id "jcn_only_AA.726"; transcript_id "jcn_only_AA.726"; gene_name "CUFF.1975"; flanks "15586350^,15584267^"; structure "1-,2-"; splice_chain "15584536-,15584267-"; psi "0.930928";
chr16	juncbase	intron_retention	70389438	70390032	.	-	.	gene_id "intron_retention.872"; transcript_id "intron_retention.872"; gene_name "CUFF.1975"; flanks "70389438-,70390032^"; structure "0,1^2-"; splice_chain ",70389438^70390032-"; psi "0.647100";
chr3	juncbase	intron_retention	33438237	33437772	.	-	.	gene_id "intron_retention.873"; transcript_id "intron_retention.873"; gene_name "CUFF.1975"; flanks "33438237-,33437772^"; structure "0,1^2-"; splice_chain ",33438237^33437772-"; psi "0.536800";
chr2	juncbase	intron_retention	241405786	241405863	.	-	.	gene_id "intron_retention.874"; transcript_id "intron_retention.874"; gene_name "CUFF.1975"; flanks "241405786-,241405863^"; structure "0,1^2-"; splice_chain ",241405786^241405863-"; psi "0.816100";
chr19	juncbase	intron_retention	17448473	17448708	.	-	.	gene_id "intron_retention.875"; transcript_id "intron_retention.875"; gene_name "CUFF.1975"; flanks "17448473-,17448708^"; structure "0,1^2-"; splice_chain ",17448473^17448708-"; psi "0.239000";
chr3	juncbase	cassette	155523928	155520380	.	-	.	gene_id "cassette.662"; transcript_id "cassette.662"; gene_name "CUFF.1975"; flanks "155523928^,155520380-"; structure "0,1-2^"; splice_chain ",155523512-155523386^"; psi "0.221100";
chr9	juncbase	jcn_only_AD	104295735	104293841	.	-	.	gene_id "jcn_only_AD.897"; transcript_id "jcn_only_AD.897"; gene_name "CUFF.1975"; flanks "104295735-,104293841-"; structure "1^,2^"; splice_chain "104295735^,104294959^"; psi "0.961000";
chr14	juncbase	jcn_only_AD	50067415	50074118	.	-	.	gene_id "jcn_only_AD.898"; transcript_id "jcn_only_AD.898"; gene_name "CUFF.1975"; flanks "50067415-,50074118-"; structure "1^,2^"; splice_chain "50067415^,50070336^"; psi "0.773612";
chr14	juncbase	jcn_only_AD	50069186	50074118	.	-	.	gene_id "jcn_only_AD.899"; transcript_id "jcn_only_AD.899"; gene_name "CUFF.1975"; flanks "50069186-,50074118-"; structure "1^,2^"; splice_chain "50069186^,50070336^"; psi "0.893826";
chr3	juncbase	jcn_only_AA	49466541	49463855	.	-	.	gene_id "jcn_only_AA.727"; transcript_id "jcn_only_AA.727"; gene_name "CUFF.1975"; flanks "49466541^,49463855^"; structure "1-,2-"; splice_chain "49463861-,49463855-"; psi "0.062400";
chr14	juncbase	jcn_only_AD	71227719	71216798	.	-	.	gene_id "jcn_only_AD.900"; transcript_id "jcn_only_AD.900"; gene_name "CUFF.1975"; flanks "71227719-,71216798-"; structure "1^,2^"; splice_chain "71227719^,71219655^"; psi "0.593800";
chr9	juncbase	jcn_only_AA	131486273	131484853	.	-	.	gene_id "jcn_only_AA.728"; transcript_id "jcn_only_AA.728"; gene_name "CUFF.1975"; flanks "131486273^,131484853^"; structure "1-,2-"; splice_chain "131485018-,131484853-"; psi "0.677900";
chr11	juncbase	intron_retention	10821791	10821303	.	-	.	gene_id "intron_retention.876"; transcript_id "intron_retention.876"; gene_name "CUFF.1975"; flanks "10821791-,10821303^"; structure "0,1^2-"; splice_chain ",10821791^10821303-"; psi "0.339000";
chr18	juncbase	jcn_only_AD	12658204	12658573	.	-	.	gene_id "jcn_only_AD.901"; transcript_id "jcn_only_AD.901"; gene_name "CUFF.1975"; flanks "12658204-,12658573-"; structure "1^,2^"; splice_chain "12658204^,12658342^"; psi "0.409100";
chr17	juncbase	jcn_only_AA	15584179	15557745	.	-	.	gene_id "jcn_only_AA.729"; transcript_id "jcn_only_AA.729"; gene_name "CUFF.1975"; flanks "15584179^,15557745^"; structure "1-,2-"; splice_chain "15562190-,15557745-"; psi "0.444746";
chr17	juncbase	jcn_only_AA	15584179	15546130	.	-	.	gene_id "jcn_only_AA.730"; transcript_id "jcn_only_AA.730"; gene_name "CUFF.1975"; flanks "15584179^,15546130^"; structure "1-,2-"; splice_chain "15562190-,15546130-"; psi "0.604157";
chr2	juncbase	jcn_only_AD	1158975	1161234	.	-	.	gene_id "jcn_only_AD.902"; transcript_id "jcn_only_AD.902"; gene_name "CUFF.1975"; flanks "1158975-,1161234-"; structure "1^,2^"; splice_chain "1158975^,1159411^"; psi "0.752927";
chr2	juncbase	jcn_only_AD	1133495	1161234	.	-	.	gene_id "jcn_only_AD.903"; transcript_id "jcn_only_AD.903"; gene_name "CUFF.1975"; flanks "1133495-,1161234-"; structure "1^,2^"; splice_chain "1133495^,1159411^"; psi "0.893859";
chr7	juncbase	intron_retention	36934614	36901341	.	-	.	gene_id "intron_retention.877"; transcript_id "intron_retention.877"; gene_name "CUFF.1975"; flanks "36934614-,36901341^"; structure "0,1^2-"; splice_chain ",36934614^36901341-"; psi "0.542600";
chr6	juncbase	cassette	133055392	133050118	.	-	.	gene_id "cassette.663"; transcript_id "cassette.663"; gene_name "CUFF.1975"; flanks "133055392^,133050118-"; structure "0,1-2^"; splice_chain ",133052666-133052514^"; psi "0.431300";
chrX	juncbase	jcn_only_AD	114536688	114540770	.	-	.	gene_id "jcn_only_AD.904"; transcript_id "jcn_only_AD.904"; gene_name "CUFF.1975"; flanks "114536688-,114540770-"; structure "1^,2^"; splice_chain "114536688^,114537983^"; psi "0.552600";
chr2	juncbase	jcn_only_AA	110958998	110927575	.	-	.	gene_id "jcn_only_AA.731"; transcript_id "jcn_only_AA.731"; gene_name "CUFF.1975"; flanks "110958998^,110927575^"; structure "1-,2-"; splice_chain "110937261-,110927575-"; psi "0.268000";
chr14	juncbase	cassette	23392413	23395670	.	-	.	gene_id "cassette.664"; transcript_id "cassette.664"; gene_name "CUFF.1975"; flanks "23392413^,23395670-"; structure "0,1-2^"; splice_chain ",23393510-23393650^"; psi "0.721500";
chr8	juncbase	jcn_only_AD	75233480	75272372	.	-	.	gene_id "jcn_only_AD.905"; transcript_id "jcn_only_AD.905"; gene_name "CUFF.1975"; flanks "75233480-,75272372-"; structure "1^,2^"; splice_chain "75233480^,75233823^"; psi "0.413389";
chr3	juncbase	jcn_only_AA	57570111	57569734	.	-	.	gene_id "jcn_only_AA.732"; transcript_id "jcn_only_AA.732"; gene_name "CUFF.1975"; flanks "57570111^,57569734^"; structure "1-,2-"; splice_chain "57569759-,57569734-"; psi "0.195474";
chr9	juncbase	cassette	138480578	138482637	.	-	.	gene_id "cassette.665"; transcript_id "cassette.665"; gene_name "CUFF.1975"; flanks "138480578^,138482637-"; structure "0,1-2^"; splice_chain ",138481257-138481330^"; psi "0.582700";
chr15	juncbase	jcn_only_AD	57213296	57565228	.	-	.	gene_id "jcn_only_AD.906"; transcript_id "jcn_only_AD.906"; gene_name "CUFF.1975"; flanks "57213296-,57565228-"; structure "1^,2^"; splice_chain "57213296^,57555472^"; psi "0.193600";
chr14	juncbase	intron_retention	77929102	77935420	.	-	.	gene_id "intron_retention.878"; transcript_id "intron_retention.878"; gene_name "CUFF.1975"; flanks "77929102-,77935420^"; structure "0,1^2-"; splice_chain ",77929102^77935420-"; psi "0.091300";
chr14	juncbase	jcn_only_AD	59950527	59946069	.	-	.	gene_id "jcn_only_AD.907"; transcript_id "jcn_only_AD.907"; gene_name "CUFF.1975"; flanks "59950527-,59946069-"; structure "1^,2^"; splice_chain "59950527^,59950398^"; psi "0.410963";
chr3	juncbase	jcn_only_AA	27326093	27297862	.	-	.	gene_id "jcn_only_AA.733"; transcript_id "jcn_only_AA.733"; gene_name "CUFF.1975"; flanks "27326093^,27297862^"; structure "1-,2-"; splice_chain "27320464-,27297862-"; psi "0.936700";
chr8	juncbase	jcn_only_AD	99057575	99055003	.	-	.	gene_id "jcn_only_AD.908"; transcript_id "jcn_only_AD.908"; gene_name "CUFF.1975"; flanks "99057575-,99055003-"; structure "1^,2^"; splice_chain "99057575^,99057171^"; psi "0.226817";
chr11	juncbase	intron_retention	59856134	59856223	.	-	.	gene_id "intron_retention.879"; transcript_id "intron_retention.879"; gene_name "CUFF.1975"; flanks "59856134-,59856223^"; structure "0,1^2-"; splice_chain ",59856134^59856223-"; psi "0.193300";
chr6	juncbase	jcn_only_AA	5216851	5113651	.	-	.	gene_id "jcn_only_AA.734"; transcript_id "jcn_only_AA.734"; gene_name "CUFF.1975"; flanks "5216851^,5113651^"; structure "1-,2-"; splice_chain "5138973-,5113651-"; psi "0.455496";
chr4	juncbase	intron_retention	120419058	120433506	.	-	.	gene_id "intron_retention.880"; transcript_id "intron_retention.880"; gene_name "CUFF.1975"; flanks "120419058-,120433506^"; structure "0,1^2-"; splice_chain ",120419058^120433506-"; psi "0.640000";
chr4	juncbase	jcn_only_AA	163032423	162954807	.	-	.	gene_id "jcn_only_AA.735"; transcript_id "jcn_only_AA.735"; gene_name "CUFF.1975"; flanks "163032423^,162954807^"; structure "1-,2-"; splice_chain "162954810-,162954807-"; psi "0.880000";
chr15	juncbase	jcn_only_AA	83332312	83331985	.	-	.	gene_id "jcn_only_AA.736"; transcript_id "jcn_only_AA.736"; gene_name "CUFF.1975"; flanks "83332312^,83331985^"; structure "1-,2-"; splice_chain "83332047-,83331985-"; psi "0.561900";
chr17	juncbase	jcn_only_AA	1616997	1615693	.	-	.	gene_id "jcn_only_AA.737"; transcript_id "jcn_only_AA.737"; gene_name "CUFF.1975"; flanks "1616997^,1615693^"; structure "1-,2-"; splice_chain "1616219-,1615693-"; psi "0.856975";
chr17	juncbase	jcn_only_AA	1616997	1616189	.	-	.	gene_id "jcn_only_AA.738"; transcript_id "jcn_only_AA.738"; gene_name "CUFF.1975"; flanks "1616997^,1616189^"; structure "1-,2-"; splice_chain "1616219-,1616189-"; psi "0.944267";
chr17	juncbase	jcn_only_AA	1616997	1616198	.	-	.	gene_id "jcn_only_AA.739"; transcript_id "jcn_only_AA.739"; gene_name "CUFF.1975"; flanks "1616997^,1616198^"; structure "1-,2-"; splice_chain "1616219-,1616198-"; psi "0.979364";
chr14	juncbase	cassette	71204962	71201215	.	-	.	gene_id "cassette.666"; transcript_id "cassette.666"; gene_name "CUFF.1975"; flanks "71204962^,71201215-"; structure "0,1-2^"; splice_chain ",71202746-71202678^"; psi "0.189200";
chr7	juncbase	jcn_only_AA	73108380	73111796	.	-	.	gene_id "jcn_only_AA.740"; transcript_id "jcn_only_AA.740"; gene_name "CUFF.1975"; flanks "73108380^,73111796^"; structure "1-,2-"; splice_chain "73110736-,73111796-"; psi "0.345375";
chr7	juncbase	jcn_only_AA	73108380	73111935	.	-	.	gene_id "jcn_only_AA.741"; transcript_id "jcn_only_AA.741"; gene_name "CUFF.1975"; flanks "73108380^,73111935^"; structure "1-,2-"; splice_chain "73110736-,73111935-"; psi "0.872712";
chr7	juncbase	cassette	34724296	34851382	.	-	.	gene_id "cassette.667"; transcript_id "cassette.667"; gene_name "CUFF.1975"; flanks "34724296^,34851382-"; structure "0,1-2^"; splice_chain ",34818107-34818177^"; psi "0.536100";
chr7	juncbase	cassette	34724296	34867013	.	-	.	gene_id "cassette.668"; transcript_id "cassette.668"; gene_name "CUFF.1975"; flanks "34724296^,34867013-"; structure "0,1-2^"; splice_chain ",34818107-34818177^"; psi "0.536100";
chr8	juncbase	jcn_only_AA	99057171	99037966	.	-	.	gene_id "jcn_only_AA.742"; transcript_id "jcn_only_AA.742"; gene_name "CUFF.1975"; flanks "99057171^,99037966^"; structure "1-,2-"; splice_chain "99054946-,99037966-"; psi "0.113862";
chr6	juncbase	jcn_only_AA	128841404	128718833	.	-	.	gene_id "jcn_only_AA.743"; transcript_id "jcn_only_AA.743"; gene_name "CUFF.1975"; flanks "128841404^,128718833^"; structure "1-,2-"; splice_chain "128840286-,128718833-"; psi "0.929036";
chr6	juncbase	jcn_only_AA	128841404	128812994	.	-	.	gene_id "jcn_only_AA.744"; transcript_id "jcn_only_AA.744"; gene_name "CUFF.1975"; flanks "128841404^,128812994^"; structure "1-,2-"; splice_chain "128840286-,128812994-"; psi "0.338945";
chr6	juncbase	jcn_only_AA	128841404	128730477	.	-	.	gene_id "jcn_only_AA.745"; transcript_id "jcn_only_AA.745"; gene_name "CUFF.1975"; flanks "128841404^,128730477^"; structure "1-,2-"; splice_chain "128840286-,128730477-"; psi "0.704020";
chr4	juncbase	jcn_only_AD	36245313	36231267	.	-	.	gene_id "jcn_only_AD.909"; transcript_id "jcn_only_AD.909"; gene_name "CUFF.1975"; flanks "36245313-,36231267-"; structure "1^,2^"; splice_chain "36245313^,36245231^"; psi "0.044200";
chr12	juncbase	jcn_only_AA	22676360	22666324	.	-	.	gene_id "jcn_only_AA.746"; transcript_id "jcn_only_AA.746"; gene_name "CUFF.1975"; flanks "22676360^,22666324^"; structure "1-,2-"; splice_chain "22671071-,22666324-"; psi "0.166767";
chr11	juncbase	intron_retention	18477625	18478219	.	-	.	gene_id "intron_retention.881"; transcript_id "intron_retention.881"; gene_name "CUFF.1975"; flanks "18477625-,18478219^"; structure "0,1^2-"; splice_chain ",18477625^18478219-"; psi "0.946600";
chr7	juncbase	jcn_only_AA	91730370	91732001	.	-	.	gene_id "jcn_only_AA.747"; transcript_id "jcn_only_AA.747"; gene_name "CUFF.1975"; flanks "91730370^,91732001^"; structure "1-,2-"; splice_chain "91731908-,91732001-"; psi "0.610200";
chr9	juncbase	cassette	131013219	131016933	.	-	.	gene_id "cassette.669"; transcript_id "cassette.669"; gene_name "CUFF.1975"; flanks "131013219^,131016933-"; structure "0,1-2^"; splice_chain ",131015380-131015416^"; psi "0.544400";
chr4	juncbase	jcn_only_AA	120419058	120433506	.	-	.	gene_id "jcn_only_AA.748"; transcript_id "jcn_only_AA.748"; gene_name "CUFF.1975"; flanks "120419058^,120433506^"; structure "1-,2-"; splice_chain "120420716-,120433506-"; psi "0.860900";
chr6	juncbase	jcn_only_AD	29943294	29945431	.	-	.	gene_id "jcn_only_AD.910"; transcript_id "jcn_only_AD.910"; gene_name "CUFF.1975"; flanks "29943294-,29945431-"; structure "1^,2^"; splice_chain "29943294^,29945280^"; psi "0.883700";
chrX	juncbase	intron_retention	106185168	106184862	.	-	.	gene_id "intron_retention.882"; transcript_id "intron_retention.882"; gene_name "CUFF.1975"; flanks "106185168-,106184862^"; structure "0,1^2-"; splice_chain ",106185168^106184862-"; psi "0.787200";
chr2	juncbase	intron_retention	61761693	61761038	.	-	.	gene_id "intron_retention.883"; transcript_id "intron_retention.883"; gene_name "CUFF.1975"; flanks "61761693-,61761038^"; structure "0,1^2-"; splice_chain ",61761693^61761038-"; psi "0.771900";
chr3	juncbase	intron_retention	38050533	38050127	.	-	.	gene_id "intron_retention.884"; transcript_id "intron_retention.884"; gene_name "CUFF.1975"; flanks "38050533-,38050127^"; structure "0,1^2-"; splice_chain ",38050533^38050127-"; psi "0.253500";
chr11	juncbase	intron_retention	117073909	117074023	.	-	.	gene_id "intron_retention.885"; transcript_id "intron_retention.885"; gene_name "CUFF.1975"; flanks "117073909-,117074023^"; structure "0,1^2-"; splice_chain ",117073909^117074023-"; psi "0.063500";
chr6	juncbase	intron_retention	90327750	90331641	.	-	.	gene_id "intron_retention.886"; transcript_id "intron_retention.886"; gene_name "CUFF.1975"; flanks "90327750-,90331641^"; structure "0,1^2-"; splice_chain ",90327750^90331641-"; psi "0.169800";
chr17	juncbase	intron_retention	61908976	61909084	.	-	.	gene_id "intron_retention.887"; transcript_id "intron_retention.887"; gene_name "CUFF.1975"; flanks "61908976-,61909084^"; structure "0,1^2-"; splice_chain ",61908976^61909084-"; psi "0.057500";
chr4	juncbase	jcn_only_AD	3949817	3945099	.	-	.	gene_id "jcn_only_AD.911"; transcript_id "jcn_only_AD.911"; gene_name "CUFF.1975"; flanks "3949817-,3945099-"; structure "1^,2^"; splice_chain "3949817^,3948353^"; psi "0.404263";
chr4	juncbase	jcn_only_AD	3954838	3945099	.	-	.	gene_id "jcn_only_AD.912"; transcript_id "jcn_only_AD.912"; gene_name "CUFF.1975"; flanks "3954838-,3945099-"; structure "1^,2^"; splice_chain "3954838^,3948353^"; psi "0.695589";
chr4	juncbase	jcn_only_AD	3948871	3945099	.	-	.	gene_id "jcn_only_AD.913"; transcript_id "jcn_only_AD.913"; gene_name "CUFF.1975"; flanks "3948871-,3945099-"; structure "1^,2^"; splice_chain "3948871^,3948353^"; psi "0.490893";
chr4	juncbase	jcn_only_AD	3948496	3945099	.	-	.	gene_id "jcn_only_AD.914"; transcript_id "jcn_only_AD.914"; gene_name "CUFF.1975"; flanks "3948496-,3945099-"; structure "1^,2^"; splice_chain "3948496^,3948353^"; psi "0.508787";
chr7	juncbase	intron_retention	150817832	150820881	.	-	.	gene_id "intron_retention.888"; transcript_id "intron_retention.888"; gene_name "CUFF.1975"; flanks "150817832-,150820881^"; structure "0,1^2-"; splice_chain ",150817832^150820881-"; psi "0.830100";
chr18	juncbase	jcn_only_AA	61064267	61060782	.	-	.	gene_id "jcn_only_AA.749"; transcript_id "jcn_only_AA.749"; gene_name "CUFF.1975"; flanks "61064267^,61060782^"; structure "1-,2-"; splice_chain "61060799-,61060782-"; psi "0.871600";
chr17	juncbase	cassette	8644792	8638572	.	-	.	gene_id "cassette.670"; transcript_id "cassette.670"; gene_name "CUFF.1975"; flanks "8644792^,8638572-"; structure "0,1-2^"; splice_chain ",8638929-8638708^"; psi "0.623000";
chr17	juncbase	cassette	61850772	61843554	.	-	.	gene_id "cassette.671"; transcript_id "cassette.671"; gene_name "CUFF.1975"; flanks "61850772^,61843554-"; structure "0,1-2^"; splice_chain ",61850223-61850137^"; psi "0.251900";
chr5	juncbase	cassette	178045557	178043949	.	-	.	gene_id "cassette.672"; transcript_id "cassette.672"; gene_name "CUFF.1975"; flanks "178045557^,178043949-"; structure "0,1-2^"; splice_chain ",178044435-178044345^"; psi "0.473700";
chr5	juncbase	intron_retention	178032304	178030935	.	-	.	gene_id "intron_retention.889"; transcript_id "intron_retention.889"; gene_name "CUFF.1975"; flanks "178032304-,178030935^"; structure "0,1^2-"; splice_chain ",178032304^178030935-"; psi "0.429400";
chr19	juncbase	jcn_only_AA	40478151	40478369	.	-	.	gene_id "jcn_only_AA.750"; transcript_id "jcn_only_AA.750"; gene_name "CUFF.1975"; flanks "40478151^,40478369^"; structure "1-,2-"; splice_chain "40478276-,40478369-"; psi "0.133300";
chr7	juncbase	jcn_only_AA	65579957	65610430	.	-	.	gene_id "jcn_only_AA.751"; transcript_id "jcn_only_AA.751"; gene_name "CUFF.1975"; flanks "65579957^,65610430^"; structure "1-,2-"; splice_chain "65592691-,65610430-"; psi "0.294400";
chr9	juncbase	cassette	139815667	139818304	.	-	.	gene_id "cassette.673"; transcript_id "cassette.673"; gene_name "CUFF.1975"; flanks "139815667^,139818304-"; structure "0,1-2^"; splice_chain ",139816834-139816945^"; psi "0.466700";
chr4	juncbase	cassette	6114449	6087356	.	-	.	gene_id "cassette.674"; transcript_id "cassette.674"; gene_name "CUFF.1975"; flanks "6114449^,6087356-"; structure "0,1-2^"; splice_chain ",6107694-6107200^"; psi "0.898500";
chr11	juncbase	jcn_only_AA	67820552	67820829	.	-	.	gene_id "jcn_only_AA.752"; transcript_id "jcn_only_AA.752"; gene_name "CUFF.1975"; flanks "67820552^,67820829^"; structure "1-,2-"; splice_chain "67820826-,67820829-"; psi "0.243600";
chr16	juncbase	intron_retention	30006664	30006538	.	-	.	gene_id "intron_retention.890"; transcript_id "intron_retention.890"; gene_name "CUFF.1975"; flanks "30006664-,30006538^"; structure "0,1^2-"; splice_chain ",30006664^30006538-"; psi "0.171100";
chr3	juncbase	jcn_only_AA	125042153	125032500	.	-	.	gene_id "jcn_only_AA.753"; transcript_id "jcn_only_AA.753"; gene_name "CUFF.1975"; flanks "125042153^,125032500^"; structure "1-,2-"; splice_chain "125033897-,125032500-"; psi "0.947400";
chr11	juncbase	cassette	8615291	8496613	.	-	.	gene_id "cassette.675"; transcript_id "cassette.675"; gene_name "CUFF.1975"; flanks "8615291^,8496613-"; structure "0,1-2^"; splice_chain ",8602507-8602361^"; psi "0.932600";
chr12	juncbase	intron_retention	52407656	52407559	.	-	.	gene_id "intron_retention.891"; transcript_id "intron_retention.891"; gene_name "CUFF.1975"; flanks "52407656-,52407559^"; structure "0,1^2-"; splice_chain ",52407656^52407559-"; psi "0.942300";
chr14	juncbase	intron_retention	24569422	24571962	.	-	.	gene_id "intron_retention.892"; transcript_id "intron_retention.892"; gene_name "CUFF.1975"; flanks "24569422-,24571962^"; structure "0,1^2-"; splice_chain ",24569422^24571962-"; psi "0.521700";
chrX	juncbase	jcn_only_AD	153238311	153247301	.	-	.	gene_id "jcn_only_AD.915"; transcript_id "jcn_only_AD.915"; gene_name "CUFF.1975"; flanks "153238311-,153247301-"; structure "1^,2^"; splice_chain "153238311^,153246074^"; psi "0.380997";
chrX	juncbase	jcn_only_AD	153238337	153247301	.	-	.	gene_id "jcn_only_AD.916"; transcript_id "jcn_only_AD.916"; gene_name "CUFF.1975"; flanks "153238337-,153247301-"; structure "1^,2^"; splice_chain "153238337^,153246074^"; psi "0.467448";
chr15	juncbase	jcn_only_AD	66786753	66783055	.	-	.	gene_id "jcn_only_AD.917"; transcript_id "jcn_only_AD.917"; gene_name "CUFF.1975"; flanks "66786753-,66783055-"; structure "1^,2^"; splice_chain "66786753^,66786615^"; psi "0.686900";
chr1	juncbase	jcn_only_AA	156909340	156908305	.	-	.	gene_id "jcn_only_AA.754"; transcript_id "jcn_only_AA.754"; gene_name "CUFF.1975"; flanks "156909340^,156908305^"; structure "1-,2-"; splice_chain "156909077-,156908305-"; psi "0.780500";
chr10	juncbase	jcn_only_AA	98092353	98095651	.	-	.	gene_id "jcn_only_AA.755"; transcript_id "jcn_only_AA.755"; gene_name "CUFF.1975"; flanks "98092353^,98095651^"; structure "1-,2-"; splice_chain "98095648-,98095651-"; psi "0.374100";
chr11	juncbase	jcn_only_AA	559347	558979	.	-	.	gene_id "jcn_only_AA.756"; transcript_id "jcn_only_AA.756"; gene_name "CUFF.1975"; flanks "559347^,558979^"; structure "1-,2-"; splice_chain "559062-,558979-"; psi "0.487200";
chr5	juncbase	intron_retention	139851880	139862165	.	-	.	gene_id "intron_retention.893"; transcript_id "intron_retention.893"; gene_name "CUFF.1975"; flanks "139851880-,139862165^"; structure "0,1^2-"; splice_chain ",139851880^139862165-"; psi "0.886400";
chr2	juncbase	intron_retention	242577139	242590425	.	-	.	gene_id "intron_retention.894"; transcript_id "intron_retention.894"; gene_name "CUFF.1975"; flanks "242577139-,242590425^"; structure "0,1^2-"; splice_chain ",242577139^242590425-"; psi "0.019500";
chr10	juncbase	cassette	123661906	123629553	.	-	.	gene_id "cassette.676"; transcript_id "cassette.676"; gene_name "CUFF.1975"; flanks "123661906^,123629553-"; structure "0,1-2^"; splice_chain ",123658484-123658356^"; psi "0.732100";
chr14	juncbase	jcn_only_AA	92246920	92195823	.	-	.	gene_id "jcn_only_AA.757"; transcript_id "jcn_only_AA.757"; gene_name "CUFF.1975"; flanks "92246920^,92195823^"; structure "1-,2-"; splice_chain "92203193-,92195823-"; psi "0.572385";
chr1	juncbase	cassette	47139891	47152345	.	-	.	gene_id "cassette.677"; transcript_id "cassette.677"; gene_name "CUFF.1975"; flanks "47139891^,47152345-"; structure "0,1-2^"; splice_chain ",47147853-47147936^"; psi "0.070900";
chr6	juncbase	intron_retention	43480807	43480612	.	-	.	gene_id "intron_retention.895"; transcript_id "intron_retention.895"; gene_name "CUFF.1975"; flanks "43480807-,43480612^"; structure "0,1^2-"; splice_chain ",43480807^43480612-"; psi "0.495000";
chr11	juncbase	cassette	119057399	119058273	.	-	.	gene_id "cassette.678"; transcript_id "cassette.678"; gene_name "CUFF.1975"; flanks "119057399^,119058273-"; structure "0,1-2^"; splice_chain ",119057979-119058168^"; psi "0.623900";
chr2	juncbase	intron_retention	242440893	242440211	.	-	.	gene_id "intron_retention.896"; transcript_id "intron_retention.896"; gene_name "CUFF.1975"; flanks "242440893-,242440211^"; structure "0,1^2-"; splice_chain ",242440893^242440211-"; psi "0.136400";
chr19	juncbase	intron_retention	17448078	17448817	.	-	.	gene_id "intron_retention.897"; transcript_id "intron_retention.897"; gene_name "CUFF.1975"; flanks "17448078-,17448817^"; structure "0,1^2-"; splice_chain ",17448078^17448817-"; psi "0.411900";
chr19	juncbase	jcn_only_AA	4304758	4306021	.	-	.	gene_id "jcn_only_AA.758"; transcript_id "jcn_only_AA.758"; gene_name "CUFF.1975"; flanks "4304758^,4306021^"; structure "1-,2-"; splice_chain "4305982-,4306021-"; psi "0.437678";
chr18	juncbase	intron_retention	61826222	61826330	.	-	.	gene_id "intron_retention.898"; transcript_id "intron_retention.898"; gene_name "CUFF.1975"; flanks "61826222-,61826330^"; structure "0,1^2-"; splice_chain ",61826222^61826330-"; psi "0.151200";
chr2	juncbase	cassette	177502190	177497853	.	-	.	gene_id "cassette.679"; transcript_id "cassette.679"; gene_name "CUFF.1975"; flanks "177502190^,177497853-"; structure "0,1-2^"; splice_chain ",177498468-177498093^"; psi "0.933100";
chr19	juncbase	jcn_only_AD	39924162	39924058	.	-	.	gene_id "jcn_only_AD.918"; transcript_id "jcn_only_AD.918"; gene_name "CUFF.1975"; flanks "39924162-,39924058-"; structure "1^,2^"; splice_chain "39924162^,39924158^"; psi "0.927541";
chr12	juncbase	intron_retention	56579939	56578876	.	-	.	gene_id "intron_retention.899"; transcript_id "intron_retention.899"; gene_name "CUFF.1975"; flanks "56579939-,56578876^"; structure "0,1^2-"; splice_chain ",56579939^56578876-"; psi "0.613600";
chr8	juncbase	jcn_only_AA	144822118	144826030	.	-	.	gene_id "jcn_only_AA.759"; transcript_id "jcn_only_AA.759"; gene_name "CUFF.1975"; flanks "144822118^,144826030^"; structure "1-,2-"; splice_chain "144823922-,144826030-"; psi "0.404800";
chr3	juncbase	intron_retention	124951953	124951498	.	-	.	gene_id "intron_retention.900"; transcript_id "intron_retention.900"; gene_name "CUFF.1975"; flanks "124951953-,124951498^"; structure "0,1^2-"; splice_chain ",124951953^124951498-"; psi "0.789500";
chr8	juncbase	jcn_only_AD	107691520	107695427	.	-	.	gene_id "jcn_only_AD.919"; transcript_id "jcn_only_AD.919"; gene_name "CUFF.1975"; flanks "107691520-,107695427-"; structure "1^,2^"; splice_chain "107691520^,107694773^"; psi "0.857500";
chr7	juncbase	jcn_only_AA	107236447	107240842	.	-	.	gene_id "jcn_only_AA.760"; transcript_id "jcn_only_AA.760"; gene_name "CUFF.1975"; flanks "107236447^,107240842^"; structure "1-,2-"; splice_chain "107240677-,107240842-"; psi "0.781700";
chr2	juncbase	jcn_only_AA	174072275	174057784	.	-	.	gene_id "jcn_only_AA.761"; transcript_id "jcn_only_AA.761"; gene_name "CUFF.1975"; flanks "174072275^,174057784^"; structure "1-,2-"; splice_chain "174063552-,174057784-"; psi "0.930200";
chr3	juncbase	jcn_only_AD	108475906	108475435	.	-	.	gene_id "jcn_only_AD.920"; transcript_id "jcn_only_AD.920"; gene_name "CUFF.1975"; flanks "108475906-,108475435-"; structure "1^,2^"; splice_chain "108475906^,108475667^"; psi "0.419200";
chr11	juncbase	jcn_only_AA	102962413	102960038	.	-	.	gene_id "jcn_only_AA.762"; transcript_id "jcn_only_AA.762"; gene_name "CUFF.1975"; flanks "102962413^,102960038^"; structure "1-,2-"; splice_chain "102960047-,102960038-"; psi "0.197500";
chr19	juncbase	cassette	6044204	6040252	.	-	.	gene_id "cassette.680"; transcript_id "cassette.680"; gene_name "CUFF.1975"; flanks "6044204^,6040252-"; structure "0,1-2^"; splice_chain ",6042134-6042055^"; psi "0.786500";
chr7	juncbase	jcn_only_AA	107234550	107236314	.	-	.	gene_id "jcn_only_AA.763"; transcript_id "jcn_only_AA.763"; gene_name "CUFF.1975"; flanks "107234550^,107236314^"; structure "1-,2-"; splice_chain "107236312-,107236314-"; psi "0.040900";
chr11	juncbase	jcn_only_AD	117073888	117074023	.	-	.	gene_id "jcn_only_AD.921"; transcript_id "jcn_only_AD.921"; gene_name "CUFF.1975"; flanks "117073888-,117074023-"; structure "1^,2^"; splice_chain "117073888^,117073909^"; psi "0.102600";
chr11	juncbase	cassette	10828802	10827594	.	-	.	gene_id "cassette.681"; transcript_id "cassette.681"; gene_name "CUFF.1975"; flanks "10828802^,10827594-"; structure "0,1-2^"; splice_chain ",10828432-10828367^"; psi "0.765800";
chr9	juncbase	intron_retention	125616231	125613715	.	-	.	gene_id "intron_retention.901"; transcript_id "intron_retention.901"; gene_name "CUFF.1975"; flanks "125616231-,125613715^"; structure "0,1^2-"; splice_chain ",125616231^125613715-"; psi "0.360400";
chr17	juncbase	cassette	76996182	76994045	.	-	.	gene_id "cassette.682"; transcript_id "cassette.682"; gene_name "CUFF.1975"; flanks "76996182^,76994045-"; structure "0,1-2^"; splice_chain ",76994368-76994230^"; psi "0.192800";
chr17	juncbase	cassette	77005746	76994045	.	-	.	gene_id "cassette.683"; transcript_id "cassette.683"; gene_name "CUFF.1975"; flanks "77005746^,76994045-"; structure "0,1-2^"; splice_chain ",76994368-76994230^"; psi "0.192800";
chr1	juncbase	jcn_only_AD	169698327	169697068	.	-	.	gene_id "jcn_only_AD.922"; transcript_id "jcn_only_AD.922"; gene_name "CUFF.1975"; flanks "169698327-,169697068-"; structure "1^,2^"; splice_chain "169698327^,169697199^"; psi "0.845200";
chr2	juncbase	intron_retention	86400773	86398435	.	-	.	gene_id "intron_retention.902"; transcript_id "intron_retention.902"; gene_name "CUFF.1975"; flanks "86400773-,86398435^"; structure "0,1^2-"; splice_chain ",86400773^86398435-"; psi "0.846300";
chr17	juncbase	intron_retention	61905569	61907212	.	-	.	gene_id "intron_retention.903"; transcript_id "intron_retention.903"; gene_name "CUFF.1975"; flanks "61905569-,61907212^"; structure "0,1^2-"; splice_chain ",61905569^61907212-"; psi "0.693500";
chr19	juncbase	intron_retention	51538051	51537896	.	-	.	gene_id "intron_retention.904"; transcript_id "intron_retention.904"; gene_name "CUFF.1975"; flanks "51538051-,51537896^"; structure "0,1^2-"; splice_chain ",51538051^51537896-"; psi "0.230800";
chr18	juncbase	jcn_only_AD	55919286	55983214	.	-	.	gene_id "jcn_only_AD.923"; transcript_id "jcn_only_AD.923"; gene_name "CUFF.1975"; flanks "55919286-,55983214-"; structure "1^,2^"; splice_chain "55919286^,55981821^"; psi "0.892500";
chrX	juncbase	jcn_only_AA	119378619	119271099	.	-	.	gene_id "jcn_only_AA.764"; transcript_id "jcn_only_AA.764"; gene_name "CUFF.1975"; flanks "119378619^,119271099^"; structure "1-,2-"; splice_chain "119312411-,119271099-"; psi "0.295082";
chr3	juncbase	jcn_only_AD	28357914	28361000	.	-	.	gene_id "jcn_only_AD.924"; transcript_id "jcn_only_AD.924"; gene_name "CUFF.1975"; flanks "28357914-,28361000-"; structure "1^,2^"; splice_chain "28357914^,28360370^"; psi "0.957234";
chr3	juncbase	jcn_only_AD	28358350	28361000	.	-	.	gene_id "jcn_only_AD.925"; transcript_id "jcn_only_AD.925"; gene_name "CUFF.1975"; flanks "28358350-,28361000-"; structure "1^,2^"; splice_chain "28358350^,28360370^"; psi "0.599202";
chr15	juncbase	intron_retention	64447102	64447306	.	-	.	gene_id "intron_retention.905"; transcript_id "intron_retention.905"; gene_name "CUFF.1975"; flanks "64447102-,64447306^"; structure "0,1^2-"; splice_chain ",64447102^64447306-"; psi "0.794100";
chr2	juncbase	jcn_only_AD	208031718	208030430	.	-	.	gene_id "jcn_only_AD.926"; transcript_id "jcn_only_AD.926"; gene_name "CUFF.1975"; flanks "208031718-,208030430-"; structure "1^,2^"; splice_chain "208031718^,208031481^"; psi "0.836983";
chr7	juncbase	cassette	102669798	102668005	.	-	.	gene_id "cassette.684"; transcript_id "cassette.684"; gene_name "CUFF.1975"; flanks "102669798^,102668005-"; structure "0,1-2^"; splice_chain ",102669195-102669047^"; psi "0.948400";
chr12	juncbase	cassette	56566212	56565216	.	-	.	gene_id "cassette.685"; transcript_id "cassette.685"; gene_name "CUFF.1975"; flanks "56566212^,56565216-"; structure "0,1-2^"; splice_chain ",56565721-56565463^"; psi "0.881800";
chr19	juncbase	jcn_only_AD	6148242	6047515	.	-	.	gene_id "jcn_only_AD.927"; transcript_id "jcn_only_AD.927"; gene_name "CUFF.1975"; flanks "6148242-,6047515-"; structure "1^,2^"; splice_chain "6148242^,6072016^"; psi "0.378999";
chr19	juncbase	jcn_only_AD	6110404	6047515	.	-	.	gene_id "jcn_only_AD.928"; transcript_id "jcn_only_AD.928"; gene_name "CUFF.1975"; flanks "6110404-,6047515-"; structure "1^,2^"; splice_chain "6110404^,6072016^"; psi "0.793233";
chr7	juncbase	jcn_only_AA	73098134	73105246	.	-	.	gene_id "jcn_only_AA.765"; transcript_id "jcn_only_AA.765"; gene_name "CUFF.1975"; flanks "73098134^,73105246^"; structure "1-,2-"; splice_chain "73100966-,73105246-"; psi "0.037600";
chr2	juncbase	intron_retention	3469466	3481466	.	-	.	gene_id "intron_retention.906"; transcript_id "intron_retention.906"; gene_name "CUFF.1975"; flanks "3469466-,3481466^"; structure "0,1^2-"; splice_chain ",3469466^3481466-"; psi "0.093800";
chr12	juncbase	cassette	56577959	56575863	.	-	.	gene_id "cassette.686"; transcript_id "cassette.686"; gene_name "CUFF.1975"; flanks "56577959^,56575863-"; structure "0,1-2^"; splice_chain ",56577714-56577645^"; psi "0.826300";
chr19	juncbase	intron_retention	50285227	50296293	.	-	.	gene_id "intron_retention.907"; transcript_id "intron_retention.907"; gene_name "CUFF.1975"; flanks "50285227-,50296293^"; structure "0,1^2-"; splice_chain ",50285227^50296293-"; psi "0.014400";
chr2	juncbase	jcn_only_AD	69901155	69870406	.	-	.	gene_id "jcn_only_AD.929"; transcript_id "jcn_only_AD.929"; gene_name "CUFF.1975"; flanks "69901155-,69870406-"; structure "1^,2^"; splice_chain "69901155^,69870924^"; psi "0.523810";
chr12	juncbase	jcn_only_AA	21200151	21207513	.	-	.	gene_id "jcn_only_AA.766"; transcript_id "jcn_only_AA.766"; gene_name "CUFF.1975"; flanks "21200151^,21207513^"; structure "1-,2-"; splice_chain "21201646-,21207513-"; psi "0.353800";
chr13	juncbase	jcn_only_AA	52028465	52034808	.	-	.	gene_id "jcn_only_AA.767"; transcript_id "jcn_only_AA.767"; gene_name "CUFF.1975"; flanks "52028465^,52034808^"; structure "1-,2-"; splice_chain "52034621-,52034808-"; psi "0.410500";
chr17	juncbase	jcn_only_AA	66524041	66525011	.	-	.	gene_id "jcn_only_AA.768"; transcript_id "jcn_only_AA.768"; gene_name "CUFF.1975"; flanks "66524041^,66525011^"; structure "1-,2-"; splice_chain "66524772-,66525011-"; psi "0.662200";
chr15	juncbase	cassette	44876012	44862856	.	-	.	gene_id "cassette.687"; transcript_id "cassette.687"; gene_name "CUFF.1975"; flanks "44876012^,44862856-"; structure "0,1-2^"; splice_chain ",44865018-44864881^"; psi "0.895200";
chr16	juncbase	cassette	75579724	75576581	.	-	.	gene_id "cassette.688"; transcript_id "cassette.688"; gene_name "CUFF.1975"; flanks "75579724^,75576581-"; structure "0,1-2^"; splice_chain ",75579393-75579250^"; psi "0.807200";
chr4	juncbase	intron_retention	83821525	83821376	.	-	.	gene_id "intron_retention.908"; transcript_id "intron_retention.908"; gene_name "CUFF.1975"; flanks "83821525-,83821376^"; structure "0,1^2-"; splice_chain ",83821525^83821376-"; psi "0.745500";
chr15	juncbase	intron_retention	44913957	44912601	.	-	.	gene_id "intron_retention.909"; transcript_id "intron_retention.909"; gene_name "CUFF.1975"; flanks "44913957-,44912601^"; structure "0,1^2-"; splice_chain ",44913957^44912601-"; psi "0.535700";
chr15	juncbase	jcn_only_AD	83334209	83333695	.	-	.	gene_id "jcn_only_AD.930"; transcript_id "jcn_only_AD.930"; gene_name "CUFF.1975"; flanks "83334209-,83333695-"; structure "1^,2^"; splice_chain "83334209^,83333999^"; psi "0.818200";
chr1	juncbase	cassette	16899637	16894525	.	-	.	gene_id "cassette.689"; transcript_id "cassette.689"; gene_name "CUFF.1975"; flanks "16899637^,16894525-"; structure "0,1-2^"; splice_chain ",16895731-16895568^"; psi "0.917600";
chr10	juncbase	cassette	101507147	101514286	.	-	.	gene_id "cassette.690"; transcript_id "cassette.690"; gene_name "CUFF.1975"; flanks "101507147^,101514286-"; structure "0,1-2^"; splice_chain ",101510126-101510153^"; psi "0.141900";
chr5	juncbase	intron_retention	149782126	149781813	.	-	.	gene_id "intron_retention.910"; transcript_id "intron_retention.910"; gene_name "CUFF.1975"; flanks "149782126-,149781813^"; structure "0,1^2-"; splice_chain ",149782126^149781813-"; psi "0.364500";
chr17	juncbase	jcn_only_AD	1617150	1616349	.	-	.	gene_id "jcn_only_AD.931"; transcript_id "jcn_only_AD.931"; gene_name "CUFF.1975"; flanks "1617150-,1616349-"; structure "1^,2^"; splice_chain "1617150^,1616997^"; psi "0.741600";
chr11	juncbase	intron_retention	118402586	118403125	.	-	.	gene_id "intron_retention.911"; transcript_id "intron_retention.911"; gene_name "CUFF.1975"; flanks "118402586-,118403125^"; structure "0,1^2-"; splice_chain ",118402586^118403125-"; psi "0.451200";
chr11	juncbase	jcn_only_AD	830713	831224	.	-	.	gene_id "jcn_only_AD.932"; transcript_id "jcn_only_AD.932"; gene_name "CUFF.1975"; flanks "830713-,831224-"; structure "1^,2^"; splice_chain "830713^,831032^"; psi "0.775100";
chr12	juncbase	cassette	52985248	52981635	.	-	.	gene_id "cassette.691"; transcript_id "cassette.691"; gene_name "CUFF.1975"; flanks "52985248^,52981635-"; structure "0,1-2^"; splice_chain ",52984745-52984620^"; psi "0.895700";
chr11	juncbase	intron_retention	830713	831224	.	-	.	gene_id "intron_retention.912"; transcript_id "intron_retention.912"; gene_name "CUFF.1975"; flanks "830713-,831224^"; structure "0,1^2-"; splice_chain ",830713^831224-"; psi "0.379400";
chr8	juncbase	jcn_only_AA	120774655	120772978	.	-	.	gene_id "jcn_only_AA.769"; transcript_id "jcn_only_AA.769"; gene_name "CUFF.1975"; flanks "120774655^,120772978^"; structure "1-,2-"; splice_chain "120774012-,120772978-"; psi "0.845500";
chr14	juncbase	jcn_only_AD	58899175	58909424	.	-	.	gene_id "jcn_only_AD.933"; transcript_id "jcn_only_AD.933"; gene_name "CUFF.1975"; flanks "58899175-,58909424-"; structure "1^,2^"; splice_chain "58899175^,58906878^"; psi "0.925705";
chr9	juncbase	cassette	43861206	43884945	.	-	.	gene_id "cassette.692"; transcript_id "cassette.692"; gene_name "CUFF.1975"; flanks "43861206^,43884945-"; structure "0,1-2^"; splice_chain ",43875989-43876145^"; psi "0.426200";
chr12	juncbase	jcn_only_AA	113658802	113646064	.	-	.	gene_id "jcn_only_AA.770"; transcript_id "jcn_only_AA.770"; gene_name "CUFF.1975"; flanks "113658802^,113646064^"; structure "1-,2-"; splice_chain "113646314-,113646064-"; psi "0.453500";
chr9	juncbase	jcn_only_AA	131483930	131483759	.	-	.	gene_id "jcn_only_AA.771"; transcript_id "jcn_only_AA.771"; gene_name "CUFF.1975"; flanks "131483930^,131483759^"; structure "1-,2-"; splice_chain "131483809-,131483759-"; psi "0.063087";
chr9	juncbase	jcn_only_AA	131483930	131483781	.	-	.	gene_id "jcn_only_AA.772"; transcript_id "jcn_only_AA.772"; gene_name "CUFF.1975"; flanks "131483930^,131483781^"; structure "1-,2-"; splice_chain "131483809-,131483781-"; psi "0.342199";
chr15	juncbase	jcn_only_AD	29213921	29287956	.	-	.	gene_id "jcn_only_AD.934"; transcript_id "jcn_only_AD.934"; gene_name "CUFF.1975"; flanks "29213921-,29287956-"; structure "1^,2^"; splice_chain "29213921^,29213952^"; psi "0.025913";
chr12	juncbase	jcn_only_AA	49351093	49335360	.	-	.	gene_id "jcn_only_AA.773"; transcript_id "jcn_only_AA.773"; gene_name "CUFF.1975"; flanks "49351093^,49335360^"; structure "1-,2-"; splice_chain "49350318-,49335360-"; psi "0.218274";
chr12	juncbase	jcn_only_AA	49351093	49332630	.	-	.	gene_id "jcn_only_AA.774"; transcript_id "jcn_only_AA.774"; gene_name "CUFF.1975"; flanks "49351093^,49332630^"; structure "1-,2-"; splice_chain "49350318-,49332630-"; psi "0.338346";
chr12	juncbase	jcn_only_AA	49351093	49349980	.	-	.	gene_id "jcn_only_AA.775"; transcript_id "jcn_only_AA.775"; gene_name "CUFF.1975"; flanks "49351093^,49349980^"; structure "1-,2-"; splice_chain "49350318-,49349980-"; psi "0.863505";
chr1	juncbase	cassette	70832220	70833300	.	-	.	gene_id "cassette.693"; transcript_id "cassette.693"; gene_name "CUFF.1975"; flanks "70832220^,70833300-"; structure "0,1-2^"; splice_chain ",70832616-70832667^"; psi "0.143200";
chr5	juncbase	cassette	178050257	178045779	.	-	.	gene_id "cassette.694"; transcript_id "cassette.694"; gene_name "CUFF.1975"; flanks "178050257^,178045779-"; structure "0,1-2^"; splice_chain ",178047674-178046839^"; psi "0.712300";
chr5	juncbase	jcn_only_AA	162852809	162516352	.	-	.	gene_id "jcn_only_AA.776"; transcript_id "jcn_only_AA.776"; gene_name "CUFF.1975"; flanks "162852809^,162516352^"; structure "1-,2-"; splice_chain "162683993-,162516352-"; psi "0.212600";
chr19	juncbase	cassette	11888552	11889145	.	-	.	gene_id "cassette.695"; transcript_id "cassette.695"; gene_name "CUFF.1975"; flanks "11888552^,11889145-"; structure "0,1-2^"; splice_chain ",11888931-11888994^"; psi "0.726000";
chr1	juncbase	intron_retention	224380220	224380598	.	-	.	gene_id "intron_retention.913"; transcript_id "intron_retention.913"; gene_name "CUFF.1975"; flanks "224380220-,224380598^"; structure "0,1^2-"; splice_chain ",224380220^224380598-"; psi "0.150000";
chr7	juncbase	cassette	30793554	30818048	.	-	.	gene_id "cassette.696"; transcript_id "cassette.696"; gene_name "CUFF.1975"; flanks "30793554^,30818048-"; structure "0,1-2^"; splice_chain ",30805961-30806177^"; psi "0.630800";
chr3	juncbase	jcn_only_AD	119205779	119207776	.	-	.	gene_id "jcn_only_AD.935"; transcript_id "jcn_only_AD.935"; gene_name "CUFF.1975"; flanks "119205779-,119207776-"; structure "1^,2^"; splice_chain "119205779^,119205883^"; psi "0.168500";
chr6	juncbase	jcn_only_AD	90218968	90276553	.	-	.	gene_id "jcn_only_AD.936"; transcript_id "jcn_only_AD.936"; gene_name "CUFF.1975"; flanks "90218968-,90276553-"; structure "1^,2^"; splice_chain "90218968^,90272617^"; psi "0.103711";
chr6	juncbase	jcn_only_AD	90218677	90276553	.	-	.	gene_id "jcn_only_AD.937"; transcript_id "jcn_only_AD.937"; gene_name "CUFF.1975"; flanks "90218677-,90276553-"; structure "1^,2^"; splice_chain "90218677^,90272617^"; psi "0.331994";
chr6	juncbase	jcn_only_AD	90193277	90276553	.	-	.	gene_id "jcn_only_AD.938"; transcript_id "jcn_only_AD.938"; gene_name "CUFF.1975"; flanks "90193277-,90276553-"; structure "1^,2^"; splice_chain "90193277^,90272617^"; psi "0.071616";
chr6	juncbase	jcn_only_AA	43484465	43483784	.	-	.	gene_id "jcn_only_AA.777"; transcript_id "jcn_only_AA.777"; gene_name "CUFF.1975"; flanks "43484465^,43483784^"; structure "1-,2-"; splice_chain "43483833-,43483784-"; psi "0.650982";
chr5	juncbase	intron_retention	134190852	134193047	.	-	.	gene_id "intron_retention.914"; transcript_id "intron_retention.914"; gene_name "CUFF.1975"; flanks "134190852-,134193047^"; structure "0,1^2-"; splice_chain ",134190852^134193047-"; psi "0.789500";
chr2	juncbase	jcn_only_AA	33477911	33482510	.	-	.	gene_id "jcn_only_AA.778"; transcript_id "jcn_only_AA.778"; gene_name "CUFF.1975"; flanks "33477911^,33482510^"; structure "1-,2-"; splice_chain "33482435-,33482510-"; psi "0.316778";
chr16	juncbase	intron_retention	31382818	31382951	.	-	.	gene_id "intron_retention.915"; transcript_id "intron_retention.915"; gene_name "CUFF.1975"; flanks "31382818-,31382951^"; structure "0,1^2-"; splice_chain ",31382818^31382951-"; psi "0.473700";
chr16	juncbase	intron_retention	57513757	57513600	.	-	.	gene_id "intron_retention.916"; transcript_id "intron_retention.916"; gene_name "CUFF.1975"; flanks "57513757-,57513600^"; structure "0,1^2-"; splice_chain ",57513757^57513600-"; psi "0.393900";
chr7	juncbase	jcn_only_AA	129008392	129019482	.	-	.	gene_id "jcn_only_AA.779"; transcript_id "jcn_only_AA.779"; gene_name "CUFF.1975"; flanks "129008392^,129019482^"; structure "1-,2-"; splice_chain "129019479-,129019482-"; psi "0.874300";
chr19	juncbase	intron_retention	1438891	1439605	.	-	.	gene_id "intron_retention.917"; transcript_id "intron_retention.917"; gene_name "CUFF.1975"; flanks "1438891-,1439605^"; structure "0,1^2-"; splice_chain ",1438891^1439605-"; psi "0.885500";
chr10	juncbase	jcn_only_AA	78778771	78771801	.	-	.	gene_id "jcn_only_AA.780"; transcript_id "jcn_only_AA.780"; gene_name "CUFF.1975"; flanks "78778771^,78771801^"; structure "1-,2-"; splice_chain "78772315-,78771801-"; psi "0.943300";
chr19	juncbase	intron_retention	1438579	1438806	.	-	.	gene_id "intron_retention.918"; transcript_id "intron_retention.918"; gene_name "CUFF.1975"; flanks "1438579-,1438806^"; structure "0,1^2-"; splice_chain ",1438579^1438806-"; psi "0.307800";
chr4	juncbase	cassette	660403	663835	.	-	.	gene_id "cassette.697"; transcript_id "cassette.697"; gene_name "CUFF.1975"; flanks "660403^,663835-"; structure "0,1-2^"; splice_chain ",661645-661795^"; psi "0.500000";
chr11	juncbase	jcn_only_AD	102962516	102954055	.	-	.	gene_id "jcn_only_AD.939"; transcript_id "jcn_only_AD.939"; gene_name "CUFF.1975"; flanks "102962516-,102954055-"; structure "1^,2^"; splice_chain "102962516^,102959956^"; psi "0.254400";
chr7	juncbase	jcn_only_AD	107236447	107240842	.	-	.	gene_id "jcn_only_AD.940"; transcript_id "jcn_only_AD.940"; gene_name "CUFF.1975"; flanks "107236447-,107240842-"; structure "1^,2^"; splice_chain "107236447^,107240747^"; psi "0.756200";
chr11	juncbase	intron_retention	117074600	117074931	.	-	.	gene_id "intron_retention.919"; transcript_id "intron_retention.919"; gene_name "CUFF.1975"; flanks "117074600-,117074931^"; structure "0,1^2-"; splice_chain ",117074600^117074931-"; psi "0.072100";
chr1	juncbase	jcn_only_AA	153930821	153925845	.	-	.	gene_id "jcn_only_AA.781"; transcript_id "jcn_only_AA.781"; gene_name "CUFF.1975"; flanks "153930821^,153925845^"; structure "1-,2-"; splice_chain "153927642-,153925845-"; psi "0.576000";
chr19	juncbase	intron_retention	16198907	16199855	.	-	.	gene_id "intron_retention.920"; transcript_id "intron_retention.920"; gene_name "CUFF.1975"; flanks "16198907-,16199855^"; structure "0,1^2-"; splice_chain ",16198907^16199855-"; psi "0.076300";
chr19	juncbase	jcn_only_AA	17450408	17451916	.	-	.	gene_id "jcn_only_AA.782"; transcript_id "jcn_only_AA.782"; gene_name "CUFF.1975"; flanks "17450408^,17451916^"; structure "1-,2-"; splice_chain "17451853-,17451916-"; psi "0.169300";
chr2	juncbase	jcn_only_AA	1079341	1204789	.	-	.	gene_id "jcn_only_AA.783"; transcript_id "jcn_only_AA.783"; gene_name "CUFF.1975"; flanks "1079341^,1204789^"; structure "1-,2-"; splice_chain "1093882-,1204789-"; psi "0.133000";
chr22	juncbase	jcn_only_AA	45122514	45182337	.	-	.	gene_id "jcn_only_AA.784"; transcript_id "jcn_only_AA.784"; gene_name "CUFF.1975"; flanks "45122514^,45182337^"; structure "1-,2-"; splice_chain "45127610-,45182337-"; psi "0.945300";
chr6	juncbase	cassette	133055392	133047977	.	-	.	gene_id "cassette.698"; transcript_id "cassette.698"; gene_name "CUFF.1975"; flanks "133055392^,133047977-"; structure "0,1-2^"; splice_chain ",133050072-133049880^"; psi "0.582400";
chr6	juncbase	cassette	133055392	133046118	.	-	.	gene_id "cassette.699"; transcript_id "cassette.699"; gene_name "CUFF.1975"; flanks "133055392^,133046118-"; structure "0,1-2^"; splice_chain ",133050072-133049880^"; psi "0.582400";
chr6	juncbase	cassette	133055392	133048151	.	-	.	gene_id "cassette.700"; transcript_id "cassette.700"; gene_name "CUFF.1975"; flanks "133055392^,133048151-"; structure "0,1-2^"; splice_chain ",133050072-133049880^"; psi "0.582400";
chr16	juncbase	intron_retention	89804313	89804384	.	-	.	gene_id "intron_retention.921"; transcript_id "intron_retention.921"; gene_name "CUFF.1975"; flanks "89804313-,89804384^"; structure "0,1^2-"; splice_chain ",89804313^89804384-"; psi "0.157300";
chr7	juncbase	jcn_only_AA	136554165	136699567	.	-	.	gene_id "jcn_only_AA.785"; transcript_id "jcn_only_AA.785"; gene_name "CUFF.1975"; flanks "136554165^,136699567^"; structure "1-,2-"; splice_chain "136635750-,136699567-"; psi "0.944146";
chr7	juncbase	jcn_only_AA	136554165	136676934	.	-	.	gene_id "jcn_only_AA.786"; transcript_id "jcn_only_AA.786"; gene_name "CUFF.1975"; flanks "136554165^,136676934^"; structure "1-,2-"; splice_chain "136635750-,136676934-"; psi "0.640297";
chr11	juncbase	intron_retention	67766989	67766775	.	-	.	gene_id "intron_retention.922"; transcript_id "intron_retention.922"; gene_name "CUFF.1975"; flanks "67766989-,67766775^"; structure "0,1^2-"; splice_chain ",67766989^67766775-"; psi "0.217700";
chr21	juncbase	jcn_only_AD	47570033	47566241	.	-	.	gene_id "jcn_only_AD.941"; transcript_id "jcn_only_AD.941"; gene_name "CUFF.1975"; flanks "47570033-,47566241-"; structure "1^,2^"; splice_chain "47570033^,47566705^"; psi "0.942600";
chr16	juncbase	intron_retention	19592975	19612986	.	-	.	gene_id "intron_retention.923"; transcript_id "intron_retention.923"; gene_name "CUFF.1975"; flanks "19592975-,19612986^"; structure "0,1^2-"; splice_chain ",19592975^19612986-"; psi "0.871600";
chr1	juncbase	cassette	155180418	155182176	.	-	.	gene_id "cassette.701"; transcript_id "cassette.701"; gene_name "CUFF.1975"; flanks "155180418^,155182176-"; structure "0,1-2^"; splice_chain ",155181918-155182010^"; psi "0.870500";
chr10	juncbase	jcn_only_AD	78713559	78709124	.	-	.	gene_id "jcn_only_AD.942"; transcript_id "jcn_only_AD.942"; gene_name "CUFF.1975"; flanks "78713559-,78709124-"; structure "1^,2^"; splice_chain "78713559^,78711795^"; psi "0.976700";
chr6	juncbase	jcn_only_AA	112604394	112627531	.	-	.	gene_id "jcn_only_AA.787"; transcript_id "jcn_only_AA.787"; gene_name "CUFF.1975"; flanks "112604394^,112627531^"; structure "1-,2-"; splice_chain "112604500-,112627531-"; psi "0.300000";
chr10	juncbase	cassette	27054147	27044670	.	-	.	gene_id "cassette.702"; transcript_id "cassette.702"; gene_name "CUFF.1975"; flanks "27054147^,27044670-"; structure "0,1-2^"; splice_chain ",27048164-27047991^"; psi "0.730500";
chr10	juncbase	cassette	27054147	27040712	.	-	.	gene_id "cassette.703"; transcript_id "cassette.703"; gene_name "CUFF.1975"; flanks "27054147^,27040712-"; structure "0,1-2^"; splice_chain ",27048164-27047991^"; psi "0.730500";
chr14	juncbase	jcn_only_AA	61545645	61550273	.	-	.	gene_id "jcn_only_AA.788"; transcript_id "jcn_only_AA.788"; gene_name "CUFF.1975"; flanks "61545645^,61550273^"; structure "1-,2-"; splice_chain "61550268-,61550273-"; psi "0.133300";
chr10	juncbase	jcn_only_AA	78713559	78709124	.	-	.	gene_id "jcn_only_AA.789"; transcript_id "jcn_only_AA.789"; gene_name "CUFF.1975"; flanks "78713559^,78709124^"; structure "1-,2-"; splice_chain "78711917-,78709124-"; psi "0.985300";
chr11	juncbase	intron_retention	555734	555503	.	-	.	gene_id "intron_retention.924"; transcript_id "intron_retention.924"; gene_name "CUFF.1975"; flanks "555734-,555503^"; structure "0,1^2-"; splice_chain ",555734^555503-"; psi "0.851400";
chr7	juncbase	jcn_only_AD	107254177	107258773	.	-	.	gene_id "jcn_only_AD.943"; transcript_id "jcn_only_AD.943"; gene_name "CUFF.1975"; flanks "107254177-,107258773-"; structure "1^,2^"; splice_chain "107254177^,107256834^"; psi "0.415245";
chr7	juncbase	jcn_only_AD	107253877	107258773	.	-	.	gene_id "jcn_only_AD.944"; transcript_id "jcn_only_AD.944"; gene_name "CUFF.1975"; flanks "107253877-,107258773-"; structure "1^,2^"; splice_chain "107253877^,107256834^"; psi "0.750000";
chr19	juncbase	intron_retention	40904527	40903877	.	-	.	gene_id "intron_retention.925"; transcript_id "intron_retention.925"; gene_name "CUFF.1975"; flanks "40904527-,40903877^"; structure "0,1^2-"; splice_chain ",40904527^40903877-"; psi "0.500000";
chr1	juncbase	jcn_only_AA	151150477	151149507	.	-	.	gene_id "jcn_only_AA.790"; transcript_id "jcn_only_AA.790"; gene_name "CUFF.1975"; flanks "151150477^,151149507^"; structure "1-,2-"; splice_chain "151149540-,151149507-"; psi "0.922200";
chr14	juncbase	intron_retention	106208402	106208296	.	-	.	gene_id "intron_retention.926"; transcript_id "intron_retention.926"; gene_name "CUFF.1975"; flanks "106208402-,106208296^"; structure "0,1^2-"; splice_chain ",106208402^106208296-"; psi "0.242800";
chr18	juncbase	cassette	44336341	44272218	.	-	.	gene_id "cassette.704"; transcript_id "cassette.704"; gene_name "CUFF.1975"; flanks "44336341^,44272218-"; structure "0,1-2^"; splice_chain ",44284627-44284535^"; psi "0.707100";
chr19	juncbase	intron_retention	16191885	16192723	.	-	.	gene_id "intron_retention.927"; transcript_id "intron_retention.927"; gene_name "CUFF.1975"; flanks "16191885-,16192723^"; structure "0,1^2-"; splice_chain ",16191885^16192723-"; psi "0.316900";
chr10	juncbase	jcn_only_AD	735434	532470	.	-	.	gene_id "jcn_only_AD.945"; transcript_id "jcn_only_AD.945"; gene_name "CUFF.1975"; flanks "735434-,532470-"; structure "1^,2^"; splice_chain "735434^,629529^"; psi "0.982900";
chr6	juncbase	jcn_only_AD	90337415	90338831	.	-	.	gene_id "jcn_only_AD.946"; transcript_id "jcn_only_AD.946"; gene_name "CUFF.1975"; flanks "90337415-,90338831-"; structure "1^,2^"; splice_chain "90337415^,90338060^"; psi "0.493900";
chr19	juncbase	jcn_only_AA	4317277	4318381	.	-	.	gene_id "jcn_only_AA.791"; transcript_id "jcn_only_AA.791"; gene_name "CUFF.1975"; flanks "4317277^,4318381^"; structure "1-,2-"; splice_chain "4318343-,4318381-"; psi "0.098900";
chr6	juncbase	jcn_only_AA	32130399	32133915	.	-	.	gene_id "jcn_only_AA.792"; transcript_id "jcn_only_AA.792"; gene_name "CUFF.1975"; flanks "32130399^,32133915^"; structure "1-,2-"; splice_chain "32132356-,32133915-"; psi "0.149962";
chr10	juncbase	intron_retention	78647049	78644775	.	-	.	gene_id "intron_retention.928"; transcript_id "intron_retention.928"; gene_name "CUFF.1975"; flanks "78647049-,78644775^"; structure "0,1^2-"; splice_chain ",78647049^78644775-"; psi "0.720600";
chr17	juncbase	intron_retention	80441618	80446078	.	-	.	gene_id "intron_retention.929"; transcript_id "intron_retention.929"; gene_name "CUFF.1975"; flanks "80441618-,80446078^"; structure "0,1^2-"; splice_chain ",80441618^80446078-"; psi "0.933300";
chr12	juncbase	intron_retention	69236304	69237544	.	-	.	gene_id "intron_retention.930"; transcript_id "intron_retention.930"; gene_name "CUFF.1975"; flanks "69236304-,69237544^"; structure "0,1^2-"; splice_chain ",69236304^69237544-"; psi "0.764700";
chr4	juncbase	jcn_only_AA	77987402	77977253	.	-	.	gene_id "jcn_only_AA.793"; transcript_id "jcn_only_AA.793"; gene_name "CUFF.1975"; flanks "77987402^,77977253^"; structure "1-,2-"; splice_chain "77979788-,77977253-"; psi "0.131300";
chr14	juncbase	intron_retention	52495440	52486896	.	-	.	gene_id "intron_retention.931"; transcript_id "intron_retention.931"; gene_name "CUFF.1975"; flanks "52495440-,52486896^"; structure "0,1^2-"; splice_chain ",52495440^52486896-"; psi "0.303400";
chr6	juncbase	intron_retention	112375373	112375538	.	-	.	gene_id "intron_retention.932"; transcript_id "intron_retention.932"; gene_name "CUFF.1975"; flanks "112375373-,112375538^"; structure "0,1^2-"; splice_chain ",112375373^112375538-"; psi "0.314300";
chr1	juncbase	intron_retention	11083386	11084359	.	-	.	gene_id "intron_retention.933"; transcript_id "intron_retention.933"; gene_name "CUFF.1975"; flanks "11083386-,11084359^"; structure "0,1^2-"; splice_chain ",11083386^11084359-"; psi "0.556900";
chr12	juncbase	jcn_only_AA	56708635	56705179	.	-	.	gene_id "jcn_only_AA.794"; transcript_id "jcn_only_AA.794"; gene_name "CUFF.1975"; flanks "56708635^,56705179^"; structure "1-,2-"; splice_chain "56705198-,56705179-"; psi "0.141651";
chr17	juncbase	intron_retention	56082759	56082402	.	-	.	gene_id "intron_retention.934"; transcript_id "intron_retention.934"; gene_name "CUFF.1975"; flanks "56082759-,56082402^"; structure "0,1^2-"; splice_chain ",56082759^56082402-"; psi "0.818600";
chr17	juncbase	jcn_only_AA	61905283	61905498	.	-	.	gene_id "jcn_only_AA.795"; transcript_id "jcn_only_AA.795"; gene_name "CUFF.1975"; flanks "61905283^,61905498^"; structure "1-,2-"; splice_chain "61905479-,61905498-"; psi "0.889600";
chr7	juncbase	jcn_only_AD	148982587	148984656	.	-	.	gene_id "jcn_only_AD.947"; transcript_id "jcn_only_AD.947"; gene_name "CUFF.1975"; flanks "148982587-,148984656-"; structure "1^,2^"; splice_chain "148982587^,148982787^"; psi "0.853500";
chr16	juncbase	jcn_only_AD	4466460	4463405	.	-	.	gene_id "jcn_only_AD.948"; transcript_id "jcn_only_AD.948"; gene_name "CUFF.1975"; flanks "4466460-,4463405-"; structure "1^,2^"; splice_chain "4466460^,4464308^"; psi "0.937921";
chr16	juncbase	jcn_only_AD	4465716	4463405	.	-	.	gene_id "jcn_only_AD.949"; transcript_id "jcn_only_AD.949"; gene_name "CUFF.1975"; flanks "4465716-,4463405-"; structure "1^,2^"; splice_chain "4465716^,4464308^"; psi "0.904449";
chr16	juncbase	jcn_only_AD	4465767	4463405	.	-	.	gene_id "jcn_only_AD.950"; transcript_id "jcn_only_AD.950"; gene_name "CUFF.1975"; flanks "4465767-,4463405-"; structure "1^,2^"; splice_chain "4465767^,4464308^"; psi "0.365772";
chr16	juncbase	jcn_only_AD	4466786	4463405	.	-	.	gene_id "jcn_only_AD.951"; transcript_id "jcn_only_AD.951"; gene_name "CUFF.1975"; flanks "4466786-,4463405-"; structure "1^,2^"; splice_chain "4466786^,4464308^"; psi "0.250000";
chr1	juncbase	jcn_only_AD	167345392	167353094	.	-	.	gene_id "jcn_only_AD.952"; transcript_id "jcn_only_AD.952"; gene_name "CUFF.1975"; flanks "167345392-,167353094-"; structure "1^,2^"; splice_chain "167345392^,167345824^"; psi "0.727600";
chr15	juncbase	jcn_only_AA	57211104	57212100	.	-	.	gene_id "jcn_only_AA.796"; transcript_id "jcn_only_AA.796"; gene_name "CUFF.1975"; flanks "57211104^,57212100^"; structure "1-,2-"; splice_chain "57212090-,57212100-"; psi "0.014200";
chr19	juncbase	cassette	14867050	14865939	.	-	.	gene_id "cassette.705"; transcript_id "cassette.705"; gene_name "CUFF.1975"; flanks "14867050^,14865939-"; structure "0,1-2^"; splice_chain ",14866689-14866466^"; psi "0.552600";
chr19	juncbase	cassette	14867050	14863338	.	-	.	gene_id "cassette.706"; transcript_id "cassette.706"; gene_name "CUFF.1975"; flanks "14867050^,14863338-"; structure "0,1-2^"; splice_chain ",14866689-14866466^"; psi "0.552600";
chr14	juncbase	jcn_only_AA	75152303	75150236	.	-	.	gene_id "jcn_only_AA.797"; transcript_id "jcn_only_AA.797"; gene_name "CUFF.1975"; flanks "75152303^,75150236^"; structure "1-,2-"; splice_chain "75151383-,75150236-"; psi "0.212000";
chr10	juncbase	cassette	75480296	75479057	.	-	.	gene_id "cassette.707"; transcript_id "cassette.707"; gene_name "CUFF.1975"; flanks "75480296^,75479057-"; structure "0,1-2^"; splice_chain ",75479952-75479765^"; psi "0.357100";
chr2	juncbase	cassette	242594062	242606060	.	-	.	gene_id "cassette.708"; transcript_id "cassette.708"; gene_name "CUFF.1975"; flanks "242594062^,242606060-"; structure "0,1-2^"; splice_chain ",242598523-242598602^"; psi "0.927600";
chr2	juncbase	cassette	242594758	242606060	.	-	.	gene_id "cassette.709"; transcript_id "cassette.709"; gene_name "CUFF.1975"; flanks "242594758^,242606060-"; structure "0,1-2^"; splice_chain ",242598523-242598602^"; psi "0.927600";
chr17	juncbase	intron_retention	79995326	79994889	.	-	.	gene_id "intron_retention.935"; transcript_id "intron_retention.935"; gene_name "CUFF.1975"; flanks "79995326-,79994889^"; structure "0,1^2-"; splice_chain ",79995326^79994889-"; psi "0.357400";
chrX	juncbase	jcn_only_AD	106185206	106184862	.	-	.	gene_id "jcn_only_AD.953"; transcript_id "jcn_only_AD.953"; gene_name "CUFF.1975"; flanks "106185206-,106184862-"; structure "1^,2^"; splice_chain "106185206^,106185168^"; psi "0.777800";
chr7	juncbase	jcn_only_AA	7222451	7273934	.	-	.	gene_id "jcn_only_AA.798"; transcript_id "jcn_only_AA.798"; gene_name "CUFF.1975"; flanks "7222451^,7273934^"; structure "1-,2-"; splice_chain "7249058-,7273934-"; psi "0.338800";
chr2	juncbase	jcn_only_AD	242610820	242611606	.	-	.	gene_id "jcn_only_AD.954"; transcript_id "jcn_only_AD.954"; gene_name "CUFF.1975"; flanks "242610820-,242611606-"; structure "1^,2^"; splice_chain "242610820^,242610856^"; psi "0.802505";
chr2	juncbase	jcn_only_AD	242610840	242611606	.	-	.	gene_id "jcn_only_AD.955"; transcript_id "jcn_only_AD.955"; gene_name "CUFF.1975"; flanks "242610840-,242611606-"; structure "1^,2^"; splice_chain "242610840^,242610856^"; psi "0.287773";
chr6	juncbase	jcn_only_AD	128841404	128718833	.	-	.	gene_id "jcn_only_AD.956"; transcript_id "jcn_only_AD.956"; gene_name "CUFF.1975"; flanks "128841404-,128718833-"; structure "1^,2^"; splice_chain "128841404^,128812877^"; psi "0.695868";
chr11	juncbase	cassette	102962516	102937296	.	-	.	gene_id "cassette.710"; transcript_id "cassette.710"; gene_name "CUFF.1975"; flanks "102962516^,102937296-"; structure "0,1-2^"; splice_chain ",102954055-102953985^"; psi "0.883200";
chr4	juncbase	jcn_only_AA	120415678	120418966	.	-	.	gene_id "jcn_only_AA.799"; transcript_id "jcn_only_AA.799"; gene_name "CUFF.1975"; flanks "120415678^,120418966^"; structure "1-,2-"; splice_chain "120418817-,120418966-"; psi "0.911100";
chr7	juncbase	cassette	6641771	6647591	.	-	.	gene_id "cassette.711"; transcript_id "cassette.711"; gene_name "CUFF.1975"; flanks "6641771^,6647591-"; structure "0,1-2^"; splice_chain ",6647168-6647228^"; psi "0.745000";
chr1	juncbase	jcn_only_AD	2087531	2100957	.	-	.	gene_id "jcn_only_AD.957"; transcript_id "jcn_only_AD.957"; gene_name "CUFF.1975"; flanks "2087531-,2100957-"; structure "1^,2^"; splice_chain "2087531^,2100556^"; psi "0.962000";
chr5	juncbase	jcn_only_AD	60240759	60224786	.	-	.	gene_id "jcn_only_AD.958"; transcript_id "jcn_only_AD.958"; gene_name "CUFF.1975"; flanks "60240759-,60224786-"; structure "1^,2^"; splice_chain "60240759^,60227934^"; psi "0.878800";
chr12	juncbase	intron_retention	48393702	48392214	.	-	.	gene_id "intron_retention.936"; transcript_id "intron_retention.936"; gene_name "CUFF.1975"; flanks "48393702-,48392214^"; structure "0,1^2-"; splice_chain ",48393702^48392214-"; psi "0.500000";
chr7	juncbase	jcn_only_AA	156471771	156469318	.	-	.	gene_id "jcn_only_AA.800"; transcript_id "jcn_only_AA.800"; gene_name "CUFF.1975"; flanks "156471771^,156469318^"; structure "1-,2-"; splice_chain "156469377-,156469318-"; psi "0.139766";
chr19	juncbase	jcn_only_AA	1438891	1440018	.	-	.	gene_id "jcn_only_AA.801"; transcript_id "jcn_only_AA.801"; gene_name "CUFF.1975"; flanks "1438891^,1440018^"; structure "1-,2-"; splice_chain "1439960-,1440018-"; psi "0.973147";
chr19	juncbase	jcn_only_AA	1438891	1440025	.	-	.	gene_id "jcn_only_AA.802"; transcript_id "jcn_only_AA.802"; gene_name "CUFF.1975"; flanks "1438891^,1440025^"; structure "1-,2-"; splice_chain "1439960-,1440025-"; psi "0.631676";
chr19	juncbase	jcn_only_AA	1438891	1439967	.	-	.	gene_id "jcn_only_AA.803"; transcript_id "jcn_only_AA.803"; gene_name "CUFF.1975"; flanks "1438891^,1439967^"; structure "1-,2-"; splice_chain "1439960-,1439967-"; psi "0.873976";
chr15	juncbase	cassette	30771396	30776705	.	-	.	gene_id "cassette.712"; transcript_id "cassette.712"; gene_name "CUFF.1975"; flanks "30771396^,30776705-"; structure "0,1-2^"; splice_chain ",30772945-30773110^"; psi "0.770800";
chr20	juncbase	cassette	30136917	30137867	.	-	.	gene_id "cassette.713"; transcript_id "cassette.713"; gene_name "CUFF.1975"; flanks "30136917^,30137867-"; structure "0,1-2^"; splice_chain ",30137010-30137135^"; psi "0.596700";
chr12	juncbase	intron_retention	120148854	120148425	.	-	.	gene_id "intron_retention.937"; transcript_id "intron_retention.937"; gene_name "CUFF.1975"; flanks "120148854-,120148425^"; structure "0,1^2-"; splice_chain ",120148854^120148425-"; psi "0.720400";
chr3	juncbase	jcn_only_AD	186769134	186790637	.	-	.	gene_id "jcn_only_AD.959"; transcript_id "jcn_only_AD.959"; gene_name "CUFF.1975"; flanks "186769134-,186790637-"; structure "1^,2^"; splice_chain "186769134^,186782404^"; psi "0.871000";
chr7	juncbase	intron_retention	148991107	148991471	.	-	.	gene_id "intron_retention.938"; transcript_id "intron_retention.938"; gene_name "CUFF.1975"; flanks "148991107-,148991471^"; structure "0,1^2-"; splice_chain ",148991107^148991471-"; psi "0.435900";
chr8	juncbase	jcn_only_AA	22013850	22012976	.	-	.	gene_id "jcn_only_AA.804"; transcript_id "jcn_only_AA.804"; gene_name "CUFF.1975"; flanks "22013850^,22012976^"; structure "1-,2-"; splice_chain "22013022-,22012976-"; psi "0.330900";
chr2	juncbase	jcn_only_AA	219449444	219452309	.	-	.	gene_id "jcn_only_AA.805"; transcript_id "jcn_only_AA.805"; gene_name "CUFF.1975"; flanks "219449444^,219452309^"; structure "1-,2-"; splice_chain "219452028-,219452309-"; psi "0.705400";
chr11	juncbase	intron_retention	117073888	117074023	.	-	.	gene_id "intron_retention.939"; transcript_id "intron_retention.939"; gene_name "CUFF.1975"; flanks "117073888-,117074023^"; structure "0,1^2-"; splice_chain ",117073888^117074023-"; psi "0.573300";
chr12	juncbase	intron_retention	11709018	11709870	.	-	.	gene_id "intron_retention.940"; transcript_id "intron_retention.940"; gene_name "CUFF.1975"; flanks "11709018-,11709870^"; structure "0,1^2-"; splice_chain ",11709018^11709870-"; psi "0.435900";
chr5	juncbase	jcn_only_AA	52161651	52177705	.	-	.	gene_id "jcn_only_AA.806"; transcript_id "jcn_only_AA.806"; gene_name "CUFF.1975"; flanks "52161651^,52177705^"; structure "1-,2-"; splice_chain "52162872-,52177705-"; psi "0.496000";
chr11	juncbase	jcn_only_AD	406349	406059	.	-	.	gene_id "jcn_only_AD.960"; transcript_id "jcn_only_AD.960"; gene_name "CUFF.1975"; flanks "406349-,406059-"; structure "1^,2^"; splice_chain "406349^,406142^"; psi "0.667100";
chr4	juncbase	cassette	56475287	56471516	.	-	.	gene_id "cassette.714"; transcript_id "cassette.714"; gene_name "CUFF.1975"; flanks "56475287^,56471516-"; structure "0,1-2^"; splice_chain ",56473633-56473604^"; psi "0.625500";
chr7	juncbase	jcn_only_AD	136553864	136554008	.	-	.	gene_id "jcn_only_AD.961"; transcript_id "jcn_only_AD.961"; gene_name "CUFF.1975"; flanks "136553864-,136554008-"; structure "1^,2^"; splice_chain "136553864^,136553920^"; psi "0.473700";
chr2	juncbase	intron_retention	242594758	242606060	.	-	.	gene_id "intron_retention.941"; transcript_id "intron_retention.941"; gene_name "CUFF.1975"; flanks "242594758-,242606060^"; structure "0,1^2-"; splice_chain ",242594758^242606060-"; psi "0.760900";
chr2	juncbase	jcn_only_AD	175816892	175809671	.	-	.	gene_id "jcn_only_AD.962"; transcript_id "jcn_only_AD.962"; gene_name "CUFF.1975"; flanks "175816892-,175809671-"; structure "1^,2^"; splice_chain "175816892^,175809898^"; psi "0.805800";
chr2	juncbase	jcn_only_AD	174136239	174072386	.	-	.	gene_id "jcn_only_AD.963"; transcript_id "jcn_only_AD.963"; gene_name "CUFF.1975"; flanks "174136239-,174072386-"; structure "1^,2^"; splice_chain "174136239^,174074375^"; psi "0.895900";
chr5	juncbase	cassette	149792188	149785884	.	-	.	gene_id "cassette.715"; transcript_id "cassette.715"; gene_name "CUFF.1975"; flanks "149792188^,149785884-"; structure "0,1-2^"; splice_chain ",149786887-149786715^"; psi "0.616400";
chr19	juncbase	intron_retention	50305398	50306206	.	-	.	gene_id "intron_retention.942"; transcript_id "intron_retention.942"; gene_name "CUFF.1975"; flanks "50305398-,50306206^"; structure "0,1^2-"; splice_chain ",50305398^50306206-"; psi "0.013600";
chr11	juncbase	jcn_only_AA	827711	828260	.	-	.	gene_id "jcn_only_AA.807"; transcript_id "jcn_only_AA.807"; gene_name "CUFF.1975"; flanks "827711^,828260^"; structure "1-,2-"; splice_chain "828230-,828260-"; psi "0.209300";
chr20	juncbase	jcn_only_AA	2842350	2843711	.	-	.	gene_id "jcn_only_AA.808"; transcript_id "jcn_only_AA.808"; gene_name "CUFF.1975"; flanks "2842350^,2843711^"; structure "1-,2-"; splice_chain "2842451-,2843711-"; psi "0.129200";
chr12	juncbase	jcn_only_AD	53853187	53854799	.	-	.	gene_id "jcn_only_AD.964"; transcript_id "jcn_only_AD.964"; gene_name "CUFF.1975"; flanks "53853187-,53854799-"; structure "1^,2^"; splice_chain "53853187^,53854209^"; psi "0.920200";
chr12	juncbase	cassette	13349806	13366413	.	-	.	gene_id "cassette.716"; transcript_id "cassette.716"; gene_name "CUFF.1975"; flanks "13349806^,13366413-"; structure "0,1-2^"; splice_chain ",13364403-13364522^"; psi "0.932700";
chr19	juncbase	jcn_only_AD	34003499	33984243	.	-	.	gene_id "jcn_only_AD.965"; transcript_id "jcn_only_AD.965"; gene_name "CUFF.1975"; flanks "34003499-,33984243-"; structure "1^,2^"; splice_chain "34003499^,33991844^"; psi "0.191492";
chr19	juncbase	jcn_only_AD	34001934	33984243	.	-	.	gene_id "jcn_only_AD.966"; transcript_id "jcn_only_AD.966"; gene_name "CUFF.1975"; flanks "34001934-,33984243-"; structure "1^,2^"; splice_chain "34001934^,33991844^"; psi "0.107295";
chr11	juncbase	jcn_only_AA	36415561	36422547	.	-	.	gene_id "jcn_only_AA.809"; transcript_id "jcn_only_AA.809"; gene_name "CUFF.1975"; flanks "36415561^,36422547^"; structure "1-,2-"; splice_chain "36417664-,36422547-"; psi "0.904877";
chr12	juncbase	jcn_only_AD	48398020	48393908	.	-	.	gene_id "jcn_only_AD.967"; transcript_id "jcn_only_AD.967"; gene_name "CUFF.1975"; flanks "48398020-,48393908-"; structure "1^,2^"; splice_chain "48398020^,48394768^"; psi "0.681800";
chr2	juncbase	jcn_only_AA	175869934	175816930	.	-	.	gene_id "jcn_only_AA.810"; transcript_id "jcn_only_AA.810"; gene_name "CUFF.1975"; flanks "175869934^,175816930^"; structure "1-,2-"; splice_chain "175869808-,175816930-"; psi "0.056100";
chr19	juncbase	intron_retention	6211309	6211076	.	-	.	gene_id "intron_retention.943"; transcript_id "intron_retention.943"; gene_name "CUFF.1975"; flanks "6211309-,6211076^"; structure "0,1^2-"; splice_chain ",6211309^6211076-"; psi "0.575500";
chr22	juncbase	intron_retention	21058344	21058476	.	-	.	gene_id "intron_retention.944"; transcript_id "intron_retention.944"; gene_name "CUFF.1975"; flanks "21058344-,21058476^"; structure "0,1^2-"; splice_chain ",21058344^21058476-"; psi "0.822200";
chr5	juncbase	intron_retention	139865317	139866591	.	-	.	gene_id "intron_retention.945"; transcript_id "intron_retention.945"; gene_name "CUFF.1975"; flanks "139865317-,139866591^"; structure "0,1^2-"; splice_chain ",139865317^139866591-"; psi "0.886800";
chr3	juncbase	intron_retention	125802897	125787089	.	-	.	gene_id "intron_retention.946"; transcript_id "intron_retention.946"; gene_name "CUFF.1975"; flanks "125802897-,125787089^"; structure "0,1^2-"; splice_chain ",125802897^125787089-"; psi "0.653500";
chr2	juncbase	jcn_only_AD	242610820	242611606	.	-	.	gene_id "jcn_only_AD.968"; transcript_id "jcn_only_AD.968"; gene_name "CUFF.1975"; flanks "242610820-,242611606-"; structure "1^,2^"; splice_chain "242610820^,242610840^"; psi "0.909558";
chr4	juncbase	jcn_only_AD	20570627	20591267	.	-	.	gene_id "jcn_only_AD.969"; transcript_id "jcn_only_AD.969"; gene_name "CUFF.1975"; flanks "20570627-,20591267-"; structure "1^,2^"; splice_chain "20570627^,20574883^"; psi "0.524600";
chr1	juncbase	jcn_only_AD	213188955	213184800	.	-	.	gene_id "jcn_only_AD.970"; transcript_id "jcn_only_AD.970"; gene_name "CUFF.1975"; flanks "213188955-,213184800-"; structure "1^,2^"; splice_chain "213188955^,213188491^"; psi "0.464300";
chr17	juncbase	jcn_only_AA	15584179	15562190	.	-	.	gene_id "jcn_only_AA.811"; transcript_id "jcn_only_AA.811"; gene_name "CUFF.1975"; flanks "15584179^,15562190^"; structure "1-,2-"; splice_chain "15580594-,15562190-"; psi "0.624952";
chr17	juncbase	jcn_only_AA	15584179	15557745	.	-	.	gene_id "jcn_only_AA.812"; transcript_id "jcn_only_AA.812"; gene_name "CUFF.1975"; flanks "15584179^,15557745^"; structure "1-,2-"; splice_chain "15580594-,15557745-"; psi "0.571678";
chr17	juncbase	jcn_only_AA	15584179	15546130	.	-	.	gene_id "jcn_only_AA.813"; transcript_id "jcn_only_AA.813"; gene_name "CUFF.1975"; flanks "15584179^,15546130^"; structure "1-,2-"; splice_chain "15580594-,15546130-"; psi "0.717772";
chr2	juncbase	jcn_only_AD	88894987	88892923	.	-	.	gene_id "jcn_only_AD.971"; transcript_id "jcn_only_AD.971"; gene_name "CUFF.1975"; flanks "88894987-,88892923-"; structure "1^,2^"; splice_chain "88894987^,88893431^"; psi "0.722800";
chr7	juncbase	intron_retention	148982587	148984656	.	-	.	gene_id "intron_retention.947"; transcript_id "intron_retention.947"; gene_name "CUFF.1975"; flanks "148982587-,148984656^"; structure "0,1^2-"; splice_chain ",148982587^148984656-"; psi "0.105800";
chr8	juncbase	cassette	106370865	106431372	.	-	.	gene_id "cassette.717"; transcript_id "cassette.717"; gene_name "CUFF.1975"; flanks "106370865^,106431372-"; structure "0,1-2^"; splice_chain ",106427103-106427234^"; psi "0.796900";
chr19	juncbase	intron_retention	50306446	50306544	.	-	.	gene_id "intron_retention.948"; transcript_id "intron_retention.948"; gene_name "CUFF.1975"; flanks "50306446-,50306544^"; structure "0,1^2-"; splice_chain ",50306446^50306544-"; psi "0.020200";
chr19	juncbase	intron_retention	50304256	50304660	.	-	.	gene_id "intron_retention.949"; transcript_id "intron_retention.949"; gene_name "CUFF.1975"; flanks "50304256-,50304660^"; structure "0,1^2-"; splice_chain ",50304256^50304660-"; psi "0.020000";
chr1	juncbase	intron_retention	174128302	174128128	.	-	.	gene_id "intron_retention.950"; transcript_id "intron_retention.950"; gene_name "CUFF.1975"; flanks "174128302-,174128128^"; structure "0,1^2-"; splice_chain ",174128302^174128128-"; psi "0.625000";
chr15	juncbase	jcn_only_AD	90437113	90432372	.	-	.	gene_id "jcn_only_AD.972"; transcript_id "jcn_only_AD.972"; gene_name "CUFF.1975"; flanks "90437113-,90432372-"; structure "1^,2^"; splice_chain "90437113^,90437109^"; psi "0.978600";
chr21	juncbase	jcn_only_AA	15985197	15981889	.	-	.	gene_id "jcn_only_AA.814"; transcript_id "jcn_only_AA.814"; gene_name "CUFF.1975"; flanks "15985197^,15981889^"; structure "1-,2-"; splice_chain "15984966-,15981889-"; psi "0.929400";
chr15	juncbase	cassette	91306387	91310140	.	-	.	gene_id "cassette.718"; transcript_id "cassette.718"; gene_name "CUFF.1975"; flanks "91306387^,91310140-"; structure "0,1-2^"; splice_chain ",91308526-91308644^"; psi "0.761200";
chr1	juncbase	jcn_only_AD	31819587	31821676	.	-	.	gene_id "jcn_only_AD.973"; transcript_id "jcn_only_AD.973"; gene_name "CUFF.1975"; flanks "31819587-,31821676-"; structure "1^,2^"; splice_chain "31819587^,31819665^"; psi "0.959300";
chr7	juncbase	jcn_only_AD	7594787	7592553	.	-	.	gene_id "jcn_only_AD.974"; transcript_id "jcn_only_AD.974"; gene_name "CUFF.1975"; flanks "7594787-,7592553-"; structure "1^,2^"; splice_chain "7594787^,7594319^"; psi "0.851600";
chr11	juncbase	intron_retention	119290761	119290141	.	-	.	gene_id "intron_retention.951"; transcript_id "intron_retention.951"; gene_name "CUFF.1975"; flanks "119290761-,119290141^"; structure "0,1^2-"; splice_chain ",119290761^119290141-"; psi "0.059100";
chr2	juncbase	intron_retention	232258621	232259366	.	-	.	gene_id "intron_retention.952"; transcript_id "intron_retention.952"; gene_name "CUFF.1975"; flanks "232258621-,232259366^"; structure "0,1^2-"; splice_chain ",232258621^232259366-"; psi "0.383100";
chr9	juncbase	jcn_only_AD	15189702	15188130	.	-	.	gene_id "jcn_only_AD.975"; transcript_id "jcn_only_AD.975"; gene_name "CUFF.1975"; flanks "15189702-,15188130-"; structure "1^,2^"; splice_chain "15189702^,15189572^"; psi "0.094600";
chr1	juncbase	jcn_only_AA	161976087	161970128	.	-	.	gene_id "jcn_only_AA.815"; transcript_id "jcn_only_AA.815"; gene_name "CUFF.1975"; flanks "161976087^,161970128^"; structure "1-,2-"; splice_chain "161970131-,161970128-"; psi "0.067300";
chr2	juncbase	intron_retention	220095127	220096650	.	-	.	gene_id "intron_retention.953"; transcript_id "intron_retention.953"; gene_name "CUFF.1975"; flanks "220095127-,220096650^"; structure "0,1^2-"; splice_chain ",220095127^220096650-"; psi "0.450700";
chr1	juncbase	jcn_only_AD	110212193	110213909	.	-	.	gene_id "jcn_only_AD.976"; transcript_id "jcn_only_AD.976"; gene_name "CUFF.1975"; flanks "110212193-,110213909-"; structure "1^,2^"; splice_chain "110212193^,110212856^"; psi "0.985100";
chr22	juncbase	jcn_only_AD	21056997	21057294	.	-	.	gene_id "jcn_only_AD.977"; transcript_id "jcn_only_AD.977"; gene_name "CUFF.1975"; flanks "21056997-,21057294-"; structure "1^,2^"; splice_chain "21056997^,21057181^"; psi "0.831500";
chr16	juncbase	intron_retention	70395413	70398446	.	-	.	gene_id "intron_retention.954"; transcript_id "intron_retention.954"; gene_name "CUFF.1975"; flanks "70395413-,70398446^"; structure "0,1^2-"; splice_chain ",70395413^70398446-"; psi "0.136200";
chr2	juncbase	jcn_only_AA	38231359	38294125	.	-	.	gene_id "jcn_only_AA.816"; transcript_id "jcn_only_AA.816"; gene_name "CUFF.1975"; flanks "38231359^,38294125^"; structure "1-,2-"; splice_chain "38244329-,38294125-"; psi "0.317016";
chr22	juncbase	jcn_only_AA	25855482	25905150	.	-	.	gene_id "jcn_only_AA.817"; transcript_id "jcn_only_AA.817"; gene_name "CUFF.1975"; flanks "25855482^,25905150^"; structure "1-,2-"; splice_chain "25856834-,25905150-"; psi "0.209104";
chr22	juncbase	jcn_only_AA	25855482	25915890	.	-	.	gene_id "jcn_only_AA.818"; transcript_id "jcn_only_AA.818"; gene_name "CUFF.1975"; flanks "25855482^,25915890^"; structure "1-,2-"; splice_chain "25856834-,25915890-"; psi "0.280721";
chr2	juncbase	intron_retention	177042731	177042222	.	-	.	gene_id "intron_retention.955"; transcript_id "intron_retention.955"; gene_name "CUFF.1975"; flanks "177042731-,177042222^"; structure "0,1^2-"; splice_chain ",177042731^177042222-"; psi "0.650600";
chr17	juncbase	intron_retention	61562427	61562597	.	-	.	gene_id "intron_retention.956"; transcript_id "intron_retention.956"; gene_name "CUFF.1975"; flanks "61562427-,61562597^"; structure "0,1^2-"; splice_chain ",61562427^61562597-"; psi "0.515300";
chr4	juncbase	cassette	56496569	56475346	.	-	.	gene_id "cassette.719"; transcript_id "cassette.719"; gene_name "CUFF.1975"; flanks "56496569^,56475346-"; structure "0,1-2^"; splice_chain ",56482552-56482505^"; psi "0.873400";
chr2	juncbase	cassette	242590526	242592927	.	-	.	gene_id "cassette.720"; transcript_id "cassette.720"; gene_name "CUFF.1975"; flanks "242590526^,242592927-"; structure "0,1-2^"; splice_chain ",242590679-242590750^"; psi "0.970400";
chr9	juncbase	cassette	116769719	116770757	.	-	.	gene_id "cassette.721"; transcript_id "cassette.721"; gene_name "CUFF.1975"; flanks "116769719^,116770757-"; structure "0,1-2^"; splice_chain ",116770624-116770659^"; psi "0.216600";
chr3	juncbase	cassette	141724283	141697524	.	-	.	gene_id "cassette.722"; transcript_id "cassette.722"; gene_name "CUFF.1975"; flanks "141724283^,141697524-"; structure "0,1-2^"; splice_chain ",141712427-141712380^"; psi "0.376400";
chr3	juncbase	cassette	141713862	141697524	.	-	.	gene_id "cassette.723"; transcript_id "cassette.723"; gene_name "CUFF.1975"; flanks "141713862^,141697524-"; structure "0,1-2^"; splice_chain ",141712427-141712380^"; psi "0.376400";
chr12	juncbase	intron_retention	7090972	7090793	.	-	.	gene_id "intron_retention.957"; transcript_id "intron_retention.957"; gene_name "CUFF.1975"; flanks "7090972-,7090793^"; structure "0,1^2-"; splice_chain ",7090972^7090793-"; psi "0.044600";
chrX	juncbase	jcn_only_AD	133594368	133607389	.	-	.	gene_id "jcn_only_AD.978"; transcript_id "jcn_only_AD.978"; gene_name "CUFF.1975"; flanks "133594368-,133607389-"; structure "1^,2^"; splice_chain "133594368^,133594565^"; psi "0.127300";
chr21	juncbase	jcn_only_AD	31015146	30971257	.	-	.	gene_id "jcn_only_AD.979"; transcript_id "jcn_only_AD.979"; gene_name "CUFF.1975"; flanks "31015146-,30971257-"; structure "1^,2^"; splice_chain "31015146^,30973548^"; psi "0.510300";
chr4	juncbase	jcn_only_AD	162680563	162577646	.	-	.	gene_id "jcn_only_AD.980"; transcript_id "jcn_only_AD.980"; gene_name "CUFF.1975"; flanks "162680563-,162577646-"; structure "1^,2^"; splice_chain "162680563^,162585968^"; psi "0.427000";
chr19	juncbase	jcn_only_AA	52264483	52271898	.	-	.	gene_id "jcn_only_AA.819"; transcript_id "jcn_only_AA.819"; gene_name "CUFF.1975"; flanks "52264483^,52271898^"; structure "1-,2-"; splice_chain "52265670-,52271898-"; psi "0.758092";
chr19	juncbase	jcn_only_AA	52264483	52266615	.	-	.	gene_id "jcn_only_AA.820"; transcript_id "jcn_only_AA.820"; gene_name "CUFF.1975"; flanks "52264483^,52266615^"; structure "1-,2-"; splice_chain "52265670-,52266615-"; psi "0.192729";
chr1	juncbase	cassette	25558595	25554726	.	-	.	gene_id "cassette.724"; transcript_id "cassette.724"; gene_name "CUFF.1975"; flanks "25558595^,25554726-"; structure "0,1-2^"; splice_chain ",25555614-25555489^"; psi "0.829000";
chr1	juncbase	intron_retention	145578479	145578637	.	-	.	gene_id "intron_retention.958"; transcript_id "intron_retention.958"; gene_name "CUFF.1975"; flanks "145578479-,145578637^"; structure "0,1^2-"; splice_chain ",145578479^145578637-"; psi "0.181800";
chr1	juncbase	intron_retention	53905100	53904721	.	-	.	gene_id "intron_retention.959"; transcript_id "intron_retention.959"; gene_name "CUFF.1975"; flanks "53905100-,53904721^"; structure "0,1^2-"; splice_chain ",53905100^53904721-"; psi "0.689100";
chr6	juncbase	jcn_only_AD	126307768	126314903	.	-	.	gene_id "jcn_only_AD.981"; transcript_id "jcn_only_AD.981"; gene_name "CUFF.1975"; flanks "126307768-,126314903-"; structure "1^,2^"; splice_chain "126307768^,126307919^"; psi "0.934191";
chr6	juncbase	jcn_only_AD	126307836	126314903	.	-	.	gene_id "jcn_only_AD.982"; transcript_id "jcn_only_AD.982"; gene_name "CUFF.1975"; flanks "126307836-,126314903-"; structure "1^,2^"; splice_chain "126307836^,126307919^"; psi "0.853177";
chr12	juncbase	intron_retention	22697254	22697113	.	-	.	gene_id "intron_retention.960"; transcript_id "intron_retention.960"; gene_name "CUFF.1975"; flanks "22697254-,22697113^"; structure "0,1^2-"; splice_chain ",22697254^22697113-"; psi "0.253000";
chr14	juncbase	jcn_only_AD	104245082	104224088	.	-	.	gene_id "jcn_only_AD.983"; transcript_id "jcn_only_AD.983"; gene_name "CUFF.1975"; flanks "104245082-,104224088-"; structure "1^,2^"; splice_chain "104245082^,104225528^"; psi "0.655112";
chr14	juncbase	jcn_only_AD	104230200	104224088	.	-	.	gene_id "jcn_only_AD.984"; transcript_id "jcn_only_AD.984"; gene_name "CUFF.1975"; flanks "104230200-,104224088-"; structure "1^,2^"; splice_chain "104230200^,104225528^"; psi "0.228459";
chr19	juncbase	intron_retention	17597766	17597909	.	-	.	gene_id "intron_retention.961"; transcript_id "intron_retention.961"; gene_name "CUFF.1975"; flanks "17597766-,17597909^"; structure "0,1^2-"; splice_chain ",17597766^17597909-"; psi "0.608100";
chr2	juncbase	jcn_only_AD	207630242	207631368	.	-	.	gene_id "jcn_only_AD.985"; transcript_id "jcn_only_AD.985"; gene_name "CUFF.1975"; flanks "207630242-,207631368-"; structure "1^,2^"; splice_chain "207630242^,207630378^"; psi "0.469735";
chr15	juncbase	intron_retention	44890829	44890571	.	-	.	gene_id "intron_retention.962"; transcript_id "intron_retention.962"; gene_name "CUFF.1975"; flanks "44890829-,44890571^"; structure "0,1^2-"; splice_chain ",44890829^44890571-"; psi "0.358800";
chr7	juncbase	jcn_only_AA	22165222	22162139	.	-	.	gene_id "jcn_only_AA.821"; transcript_id "jcn_only_AA.821"; gene_name "CUFF.1975"; flanks "22165222^,22162139^"; structure "1-,2-"; splice_chain "22165039-,22162139-"; psi "0.130400";
chr14	juncbase	jcn_only_AD	75179636	75159031	.	-	.	gene_id "jcn_only_AD.986"; transcript_id "jcn_only_AD.986"; gene_name "CUFF.1975"; flanks "75179636-,75159031-"; structure "1^,2^"; splice_chain "75179636^,75165467^"; psi "0.675185";
chr14	juncbase	jcn_only_AD	75179557	75159031	.	-	.	gene_id "jcn_only_AD.987"; transcript_id "jcn_only_AD.987"; gene_name "CUFF.1975"; flanks "75179557-,75159031-"; structure "1^,2^"; splice_chain "75179557^,75165467^"; psi "0.460984";
chr2	juncbase	intron_retention	242610856	242611606	.	-	.	gene_id "intron_retention.963"; transcript_id "intron_retention.963"; gene_name "CUFF.1975"; flanks "242610856-,242611606^"; structure "0,1^2-"; splice_chain ",242610856^242611606-"; psi "0.825900";
chr22	juncbase	cassette	25158365	25155956	.	-	.	gene_id "cassette.725"; transcript_id "cassette.725"; gene_name "CUFF.1975"; flanks "25158365^,25155956-"; structure "0,1-2^"; splice_chain ",25157928-25157846^"; psi "0.123600";
chr8	juncbase	jcn_only_AA	23282564	23225947	.	-	.	gene_id "jcn_only_AA.822"; transcript_id "jcn_only_AA.822"; gene_name "CUFF.1975"; flanks "23282564^,23225947^"; structure "1-,2-"; splice_chain "23261586-,23225947-"; psi "0.401700";
chr2	juncbase	cassette	86400773	86397964	.	-	.	gene_id "cassette.726"; transcript_id "cassette.726"; gene_name "CUFF.1975"; flanks "86400773^,86397964-"; structure "0,1-2^"; splice_chain ",86398435-86398331^"; psi "0.852900";
chr6	juncbase	jcn_only_AD	31937093	31937292	.	-	.	gene_id "jcn_only_AD.988"; transcript_id "jcn_only_AD.988"; gene_name "CUFF.1975"; flanks "31937093-,31937292-"; structure "1^,2^"; splice_chain "31937093^,31937197^"; psi "0.018100";
chr3	juncbase	jcn_only_AD	107594977	107591873	.	-	.	gene_id "jcn_only_AD.989"; transcript_id "jcn_only_AD.989"; gene_name "CUFF.1975"; flanks "107594977-,107591873-"; structure "1^,2^"; splice_chain "107594977^,107594306^"; psi "0.885592";
chr3	juncbase	jcn_only_AD	107596749	107591873	.	-	.	gene_id "jcn_only_AD.990"; transcript_id "jcn_only_AD.990"; gene_name "CUFF.1975"; flanks "107596749-,107591873-"; structure "1^,2^"; splice_chain "107596749^,107594306^"; psi "0.369782";
chr21	juncbase	cassette	15695908	15709501	.	-	.	gene_id "cassette.727"; transcript_id "cassette.727"; gene_name "CUFF.1975"; flanks "15695908^,15709501-"; structure "0,1-2^"; splice_chain ",15708401-15708578^"; psi "0.883300";
chr3	juncbase	cassette	28283303	28357824	.	-	.	gene_id "cassette.728"; transcript_id "cassette.728"; gene_name "CUFF.1975"; flanks "28283303^,28357824-"; structure "0,1-2^"; splice_chain ",28304782-28304871^"; psi "0.733900";
chr4	juncbase	cassette	7008453	7011604	.	-	.	gene_id "cassette.729"; transcript_id "cassette.729"; gene_name "CUFF.1975"; flanks "7008453^,7011604-"; structure "0,1-2^"; splice_chain ",7009251-7009352^"; psi "0.509400";
chr16	juncbase	intron_retention	105882	106321	.	-	.	gene_id "intron_retention.964"; transcript_id "intron_retention.964"; gene_name "CUFF.1975"; flanks "105882-,106321^"; structure "0,1^2-"; splice_chain ",105882^106321-"; psi "0.735300";
chr12	juncbase	intron_retention	56709691	56709026	.	-	.	gene_id "intron_retention.965"; transcript_id "intron_retention.965"; gene_name "CUFF.1975"; flanks "56709691-,56709026^"; structure "0,1^2-"; splice_chain ",56709691^56709026-"; psi "0.642900";
chr12	juncbase	jcn_only_AD	22676360	22671071	.	-	.	gene_id "jcn_only_AD.991"; transcript_id "jcn_only_AD.991"; gene_name "CUFF.1975"; flanks "22676360-,22671071-"; structure "1^,2^"; splice_chain "22676360^,22671974^"; psi "0.862100";
chr12	juncbase	intron_retention	48298738	48276557	.	-	.	gene_id "intron_retention.966"; transcript_id "intron_retention.966"; gene_name "CUFF.1975"; flanks "48298738-,48276557^"; structure "0,1^2-"; splice_chain ",48298738^48276557-"; psi "0.023200";
chr18	juncbase	cassette	56001124	56010138	.	-	.	gene_id "cassette.730"; transcript_id "cassette.730"; gene_name "CUFF.1975"; flanks "56001124^,56010138-"; structure "0,1-2^"; splice_chain ",56008910-56009029^"; psi "0.960900";
chr19	juncbase	intron_retention	1438891	1440018	.	-	.	gene_id "intron_retention.967"; transcript_id "intron_retention.967"; gene_name "CUFF.1975"; flanks "1438891-,1440018^"; structure "0,1^2-"; splice_chain ",1438891^1440018-"; psi "0.159200";
chr7	juncbase	jcn_only_AD	156549087	156526951	.	-	.	gene_id "jcn_only_AD.992"; transcript_id "jcn_only_AD.992"; gene_name "CUFF.1975"; flanks "156549087-,156526951-"; structure "1^,2^"; splice_chain "156549087^,156540618^"; psi "0.879781";
chr20	juncbase	jcn_only_AD	30011623	30009481	.	-	.	gene_id "jcn_only_AD.993"; transcript_id "jcn_only_AD.993"; gene_name "CUFF.1975"; flanks "30011623-,30009481-"; structure "1^,2^"; splice_chain "30011623^,30011613^"; psi "0.222200";
chr8	juncbase	jcn_only_AD	56663523	56652777	.	-	.	gene_id "jcn_only_AD.994"; transcript_id "jcn_only_AD.994"; gene_name "CUFF.1975"; flanks "56663523-,56652777-"; structure "1^,2^"; splice_chain "56663523^,56656040^"; psi "0.185685";
chr8	juncbase	jcn_only_AD	56657620	56652777	.	-	.	gene_id "jcn_only_AD.995"; transcript_id "jcn_only_AD.995"; gene_name "CUFF.1975"; flanks "56657620-,56652777-"; structure "1^,2^"; splice_chain "56657620^,56656040^"; psi "0.209601";
chr22	juncbase	cassette	20748952	20759667	.	-	.	gene_id "cassette.731"; transcript_id "cassette.731"; gene_name "CUFF.1975"; flanks "20748952^,20759667-"; structure "0,1-2^"; splice_chain ",20754922-20755048^"; psi "0.343300";
chr16	juncbase	intron_retention	106420	106539	.	-	.	gene_id "intron_retention.968"; transcript_id "intron_retention.968"; gene_name "CUFF.1975"; flanks "106420-,106539^"; structure "0,1^2-"; splice_chain ",106420^106539-"; psi "0.806700";
chr16	juncbase	jcn_only_AD	87812593	87811606	.	-	.	gene_id "jcn_only_AD.996"; transcript_id "jcn_only_AD.996"; gene_name "CUFF.1975"; flanks "87812593-,87811606-"; structure "1^,2^"; splice_chain "87812593^,87812414^"; psi "0.686700";
chr10	juncbase	intron_retention	124134363	124152697	.	-	.	gene_id "intron_retention.969"; transcript_id "intron_retention.969"; gene_name "CUFF.1975"; flanks "124134363-,124152697^"; structure "0,1^2-"; splice_chain ",124134363^124152697-"; psi "0.741200";
chr17	juncbase	jcn_only_AD	1617150	1616198	.	-	.	gene_id "jcn_only_AD.997"; transcript_id "jcn_only_AD.997"; gene_name "CUFF.1975"; flanks "1617150-,1616198-"; structure "1^,2^"; splice_chain "1617150^,1616997^"; psi "0.241000";
chr16	juncbase	intron_retention	21987564	21991868	.	-	.	gene_id "intron_retention.970"; transcript_id "intron_retention.970"; gene_name "CUFF.1975"; flanks "21987564-,21991868^"; structure "0,1^2-"; splice_chain ",21987564^21991868-"; psi "0.783300";
chr8	juncbase	intron_retention	56685828	56668970	.	-	.	gene_id "intron_retention.971"; transcript_id "intron_retention.971"; gene_name "CUFF.1975"; flanks "56685828-,56668970^"; structure "0,1^2-"; splice_chain ",56685828^56668970-"; psi "0.464100";
chr1	juncbase	intron_retention	156915837	156914989	.	-	.	gene_id "intron_retention.972"; transcript_id "intron_retention.972"; gene_name "CUFF.1975"; flanks "156915837-,156914989^"; structure "0,1^2-"; splice_chain ",156915837^156914989-"; psi "0.485300";
chr11	juncbase	jcn_only_AA	104916018	104915385	.	-	.	gene_id "jcn_only_AA.823"; transcript_id "jcn_only_AA.823"; gene_name "CUFF.1975"; flanks "104916018^,104915385^"; structure "1-,2-"; splice_chain "104915658-,104915385-"; psi "0.685700";
chr18	juncbase	jcn_only_AA	44272132	44268830	.	-	.	gene_id "jcn_only_AA.824"; transcript_id "jcn_only_AA.824"; gene_name "CUFF.1975"; flanks "44272132^,44268830^"; structure "1-,2-"; splice_chain "44268882-,44268830-"; psi "0.195700";
chr15	juncbase	jcn_only_AD	29213952	29287956	.	-	.	gene_id "jcn_only_AD.998"; transcript_id "jcn_only_AD.998"; gene_name "CUFF.1975"; flanks "29213952-,29287956-"; structure "1^,2^"; splice_chain "29213952^,29253787^"; psi "0.954019";
chr15	juncbase	jcn_only_AD	29213921	29287956	.	-	.	gene_id "jcn_only_AD.999"; transcript_id "jcn_only_AD.999"; gene_name "CUFF.1975"; flanks "29213921-,29287956-"; structure "1^,2^"; splice_chain "29213921^,29253787^"; psi "0.355655";
chr2	juncbase	jcn_only_AA	1168869	1215568	.	-	.	gene_id "jcn_only_AA.825"; transcript_id "jcn_only_AA.825"; gene_name "CUFF.1975"; flanks "1168869^,1215568^"; structure "1-,2-"; splice_chain "1204789-,1215568-"; psi "0.259000";
chr2	juncbase	jcn_only_AA	61765627	61761038	.	-	.	gene_id "jcn_only_AA.826"; transcript_id "jcn_only_AA.826"; gene_name "CUFF.1975"; flanks "61765627^,61761038^"; structure "1-,2-"; splice_chain "61764722-,61761038-"; psi "0.487800";
chr9	juncbase	jcn_only_AD	130941523	130941183	.	-	.	gene_id "jcn_only_AD.1000"; transcript_id "jcn_only_AD.1000"; gene_name "CUFF.1975"; flanks "130941523-,130941183-"; structure "1^,2^"; splice_chain "130941523^,130941352^"; psi "0.490900";
chr2	juncbase	jcn_only_AD	229966	219001	.	-	.	gene_id "jcn_only_AD.1001"; transcript_id "jcn_only_AD.1001"; gene_name "CUFF.1975"; flanks "229966-,219001-"; structure "1^,2^"; splice_chain "229966^,224864^"; psi "0.621300";
chr18	juncbase	cassette	55919286	55989657	.	-	.	gene_id "cassette.732"; transcript_id "cassette.732"; gene_name "CUFF.1975"; flanks "55919286^,55989657-"; structure "0,1-2^"; splice_chain ",55983214-55983264^"; psi "0.955600";
chr22	juncbase	jcn_only_AD	37705364	37707029	.	-	.	gene_id "jcn_only_AD.1002"; transcript_id "jcn_only_AD.1002"; gene_name "CUFF.1975"; flanks "37705364-,37707029-"; structure "1^,2^"; splice_chain "37705364^,37706073^"; psi "0.675900";
chr12	juncbase	intron_retention	13364522	13366413	.	-	.	gene_id "intron_retention.973"; transcript_id "intron_retention.973"; gene_name "CUFF.1975"; flanks "13364522-,13366413^"; structure "0,1^2-"; splice_chain ",13364522^13366413-"; psi "0.096800";
chr1	juncbase	cassette	70820891	70832127	.	-	.	gene_id "cassette.733"; transcript_id "cassette.733"; gene_name "CUFF.1975"; flanks "70820891^,70832127-"; structure "0,1-2^"; splice_chain ",70832010-70832011^"; psi "0.550800";
chr17	juncbase	intron_retention	80441655	80442689	.	-	.	gene_id "intron_retention.974"; transcript_id "intron_retention.974"; gene_name "CUFF.1975"; flanks "80441655-,80442689^"; structure "0,1^2-"; splice_chain ",80441655^80442689-"; psi "0.280900";
chr4	juncbase	intron_retention	57302141	57302428	.	-	.	gene_id "intron_retention.975"; transcript_id "intron_retention.975"; gene_name "CUFF.1975"; flanks "57302141-,57302428^"; structure "0,1^2-"; splice_chain ",57302141^57302428-"; psi "0.738600";
chr17	juncbase	intron_retention	61904883	61907493	.	-	.	gene_id "intron_retention.976"; transcript_id "intron_retention.976"; gene_name "CUFF.1975"; flanks "61904883-,61907493^"; structure "0,1^2-"; splice_chain ",61904883^61907493-"; psi "0.676300";
chr16	juncbase	jcn_only_AD	67233485	67233587	.	-	.	gene_id "jcn_only_AD.1003"; transcript_id "jcn_only_AD.1003"; gene_name "CUFF.1975"; flanks "67233485-,67233587-"; structure "1^,2^"; splice_chain "67233485^,67233496^"; psi "0.263900";
chr9	juncbase	cassette	130952608	130943078	.	-	.	gene_id "cassette.734"; transcript_id "cassette.734"; gene_name "CUFF.1975"; flanks "130952608^,130943078-"; structure "0,1-2^"; splice_chain ",130948055-130947826^"; psi "0.986400";
chr2	juncbase	jcn_only_AD	38224657	38231134	.	-	.	gene_id "jcn_only_AD.1004"; transcript_id "jcn_only_AD.1004"; gene_name "CUFF.1975"; flanks "38224657-,38231134-"; structure "1^,2^"; splice_chain "38224657^,38230169^"; psi "0.850500";
chr11	juncbase	jcn_only_AA	407817	407534	.	-	.	gene_id "jcn_only_AA.827"; transcript_id "jcn_only_AA.827"; gene_name "CUFF.1975"; flanks "407817^,407534^"; structure "1-,2-"; splice_chain "407568-,407534-"; psi "0.143700";
chr22	juncbase	jcn_only_AA	29683123	29688126	.	-	.	gene_id "jcn_only_AA.828"; transcript_id "jcn_only_AA.828"; gene_name "CUFF.1975"; flanks "29683123^,29688126^"; structure "1-,2-"; splice_chain "29684595-,29688126-"; psi "0.011800";
chr22	juncbase	intron_retention	18080960	18077382	.	-	.	gene_id "intron_retention.977"; transcript_id "intron_retention.977"; gene_name "CUFF.1975"; flanks "18080960-,18077382^"; structure "0,1^2-"; splice_chain ",18080960^18077382-"; psi "0.484800";
chr16	juncbase	intron_retention	2202886	2202990	.	-	.	gene_id "intron_retention.978"; transcript_id "intron_retention.978"; gene_name "CUFF.1975"; flanks "2202886-,2202990^"; structure "0,1^2-"; splice_chain ",2202886^2202990-"; psi "0.258000";
chr2	juncbase	cassette	263211	260702	.	-	.	gene_id "cassette.735"; transcript_id "cassette.735"; gene_name "CUFF.1975"; flanks "263211^,260702-"; structure "0,1-2^"; splice_chain ",262750-262631^"; psi "0.176900";
chr2	juncbase	cassette	263211	253115	.	-	.	gene_id "cassette.736"; transcript_id "cassette.736"; gene_name "CUFF.1975"; flanks "263211^,253115-"; structure "0,1-2^"; splice_chain ",262750-262631^"; psi "0.176900";
chr15	juncbase	cassette	77712348	77578846	.	-	.	gene_id "cassette.737"; transcript_id "cassette.737"; gene_name "CUFF.1975"; flanks "77712348^,77578846-"; structure "0,1-2^"; splice_chain ",77657567-77657505^"; psi "0.818200";
chr5	juncbase	jcn_only_AD	149784243	149782188	.	-	.	gene_id "jcn_only_AD.1005"; transcript_id "jcn_only_AD.1005"; gene_name "CUFF.1975"; flanks "149784243-,149782188-"; structure "1^,2^"; splice_chain "149784243^,149782684^"; psi "0.145683";
chr5	juncbase	jcn_only_AD	149785822	149782188	.	-	.	gene_id "jcn_only_AD.1006"; transcript_id "jcn_only_AD.1006"; gene_name "CUFF.1975"; flanks "149785822-,149782188-"; structure "1^,2^"; splice_chain "149785822^,149782684^"; psi "0.341824";
chr16	juncbase	intron_retention	3117416	3117985	.	-	.	gene_id "intron_retention.979"; transcript_id "intron_retention.979"; gene_name "CUFF.1975"; flanks "3117416-,3117985^"; structure "0,1^2-"; splice_chain ",3117416^3117985-"; psi "0.877100";
chr11	juncbase	intron_retention	8615630	8474453	.	-	.	gene_id "intron_retention.980"; transcript_id "intron_retention.980"; gene_name "CUFF.1975"; flanks "8615630-,8474453^"; structure "0,1^2-"; splice_chain ",8615630^8474453-"; psi "0.150000";
chr11	juncbase	jcn_only_AA	124768294	124766951	.	-	.	gene_id "jcn_only_AA.829"; transcript_id "jcn_only_AA.829"; gene_name "CUFF.1975"; flanks "124768294^,124766951^"; structure "1-,2-"; splice_chain "124767157-,124766951-"; psi "0.482300";
chr6	juncbase	jcn_only_AA	128385903	128330410	.	-	.	gene_id "jcn_only_AA.830"; transcript_id "jcn_only_AA.830"; gene_name "CUFF.1975"; flanks "128385903^,128330410^"; structure "1-,2-"; splice_chain "128330413-,128330410-"; psi "0.011698";
chr11	juncbase	cassette	8474369	8457686	.	-	.	gene_id "cassette.738"; transcript_id "cassette.738"; gene_name "CUFF.1975"; flanks "8474369^,8457686-"; structure "0,1-2^"; splice_chain ",8462300-8462225^"; psi "0.888500";
chr10	juncbase	jcn_only_AA	78644747	78637648	.	-	.	gene_id "jcn_only_AA.831"; transcript_id "jcn_only_AA.831"; gene_name "CUFF.1975"; flanks "78644747^,78637648^"; structure "1-,2-"; splice_chain "78637651-,78637648-"; psi "0.692300";
chr11	juncbase	cassette	3405514	3422989	.	-	.	gene_id "cassette.739"; transcript_id "cassette.739"; gene_name "CUFF.1975"; flanks "3405514^,3422989-"; structure "0,1-2^"; splice_chain ",3418347-3418636^"; psi "0.930600";
chr17	juncbase	intron_retention	61555151	61555292	.	-	.	gene_id "intron_retention.981"; transcript_id "intron_retention.981"; gene_name "CUFF.1975"; flanks "61555151-,61555292^"; structure "0,1^2-"; splice_chain ",61555151^61555292-"; psi "0.951300";
chr4	juncbase	jcn_only_AA	57308026	57312861	.	-	.	gene_id "jcn_only_AA.832"; transcript_id "jcn_only_AA.832"; gene_name "CUFF.1975"; flanks "57308026^,57312861^"; structure "1-,2-"; splice_chain "57312523-,57312861-"; psi "0.973700";
chr12	juncbase	jcn_only_AA	21229507	21242847	.	-	.	gene_id "jcn_only_AA.833"; transcript_id "jcn_only_AA.833"; gene_name "CUFF.1975"; flanks "21229507^,21242847^"; structure "1-,2-"; splice_chain "21242845-,21242847-"; psi "0.500000";
chr8	juncbase	jcn_only_AD	75233823	75272372	.	-	.	gene_id "jcn_only_AD.1007"; transcript_id "jcn_only_AD.1007"; gene_name "CUFF.1975"; flanks "75233823-,75272372-"; structure "1^,2^"; splice_chain "75233823^,75262813^"; psi "0.738804";
chr8	juncbase	jcn_only_AD	75233480	75272372	.	-	.	gene_id "jcn_only_AD.1008"; transcript_id "jcn_only_AD.1008"; gene_name "CUFF.1975"; flanks "75233480-,75272372-"; structure "1^,2^"; splice_chain "75233480^,75262813^"; psi "0.665920";
chr22	juncbase	intron_retention	51020678	51020291	.	-	.	gene_id "intron_retention.982"; transcript_id "intron_retention.982"; gene_name "CUFF.1975"; flanks "51020678-,51020291^"; structure "0,1^2-"; splice_chain ",51020678^51020291-"; psi "0.200000";
chrX	juncbase	jcn_only_AA	45184846	45192755	.	-	.	gene_id "jcn_only_AA.834"; transcript_id "jcn_only_AA.834"; gene_name "CUFF.1975"; flanks "45184846^,45192755^"; structure "1-,2-"; splice_chain "45192519-,45192755-"; psi "0.623200";
chr3	juncbase	jcn_only_AD	107596749	107586424	.	-	.	gene_id "jcn_only_AD.1009"; transcript_id "jcn_only_AD.1009"; gene_name "CUFF.1975"; flanks "107596749-,107586424-"; structure "1^,2^"; splice_chain "107596749^,107591173^"; psi "0.598019";
chr3	juncbase	jcn_only_AD	107591815	107586424	.	-	.	gene_id "jcn_only_AD.1010"; transcript_id "jcn_only_AD.1010"; gene_name "CUFF.1975"; flanks "107591815-,107586424-"; structure "1^,2^"; splice_chain "107591815^,107591173^"; psi "0.732838";
chr19	juncbase	cassette	52905281	52909160	.	-	.	gene_id "cassette.740"; transcript_id "cassette.740"; gene_name "CUFF.1975"; flanks "52905281^,52909160-"; structure "0,1-2^"; splice_chain ",52905682-52905798^"; psi "0.186300";
chr3	juncbase	jcn_only_AD	125042232	124996653	.	-	.	gene_id "jcn_only_AD.1011"; transcript_id "jcn_only_AD.1011"; gene_name "CUFF.1975"; flanks "125042232-,124996653-"; structure "1^,2^"; splice_chain "125042232^,124997968^"; psi "0.821800";
chr13	juncbase	jcn_only_AD	103525693	103527657	.	-	.	gene_id "jcn_only_AD.1012"; transcript_id "jcn_only_AD.1012"; gene_name "CUFF.1975"; flanks "103525693-,103527657-"; structure "1^,2^"; splice_chain "103525693^,103527208^"; psi "0.558800";
chr8	juncbase	cassette	92086139	92090584	.	-	.	gene_id "cassette.741"; transcript_id "cassette.741"; gene_name "CUFF.1975"; flanks "92086139^,92090584-"; structure "0,1-2^"; splice_chain ",92088820-92088959^"; psi "0.915100";
chr4	juncbase	jcn_only_AA	36160352	36152666	.	-	.	gene_id "jcn_only_AA.835"; transcript_id "jcn_only_AA.835"; gene_name "CUFF.1975"; flanks "36160352^,36152666^"; structure "1-,2-"; splice_chain "36159172-,36152666-"; psi "0.666700";
chr3	juncbase	jcn_only_AD	156271444	156266792	.	-	.	gene_id "jcn_only_AD.1013"; transcript_id "jcn_only_AD.1013"; gene_name "CUFF.1975"; flanks "156271444-,156266792-"; structure "1^,2^"; splice_chain "156271444^,156269187^"; psi "0.905200";
chr11	juncbase	cassette	118401949	118403632	.	-	.	gene_id "cassette.742"; transcript_id "cassette.742"; gene_name "CUFF.1975"; flanks "118401949^,118403632-"; structure "0,1-2^"; splice_chain ",118402493-118402586^"; psi "0.732500";
chr14	juncbase	intron_retention	104201337	104201000	.	-	.	gene_id "intron_retention.983"; transcript_id "intron_retention.983"; gene_name "CUFF.1975"; flanks "104201337-,104201000^"; structure "0,1^2-"; splice_chain ",104201337^104201000-"; psi "0.955700";
chr22	juncbase	jcn_only_AA	29668241	29668375	.	-	.	gene_id "jcn_only_AA.836"; transcript_id "jcn_only_AA.836"; gene_name "CUFF.1975"; flanks "29668241^,29668375^"; structure "1-,2-"; splice_chain "29668369-,29668375-"; psi "0.083900";
chr14	juncbase	jcn_only_AA	61512885	61517230	.	-	.	gene_id "jcn_only_AA.837"; transcript_id "jcn_only_AA.837"; gene_name "CUFF.1975"; flanks "61512885^,61517230^"; structure "1-,2-"; splice_chain "61514966-,61517230-"; psi "0.912685";
chr9	juncbase	jcn_only_AD	130931355	130929443	.	-	.	gene_id "jcn_only_AD.1014"; transcript_id "jcn_only_AD.1014"; gene_name "CUFF.1975"; flanks "130931355-,130929443-"; structure "1^,2^"; splice_chain "130931355^,130931331^"; psi "0.254636";
chr22	juncbase	intron_retention	25916129	25916649	.	-	.	gene_id "intron_retention.984"; transcript_id "intron_retention.984"; gene_name "CUFF.1975"; flanks "25916129-,25916649^"; structure "0,1^2-"; splice_chain ",25916129^25916649-"; psi "0.654500";
chr2	juncbase	jcn_only_AD	73228658	73227616	.	-	.	gene_id "jcn_only_AD.1015"; transcript_id "jcn_only_AD.1015"; gene_name "CUFF.1975"; flanks "73228658-,73227616-"; structure "1^,2^"; splice_chain "73228658^,73228654^"; psi "0.504500";
chr17	juncbase	intron_retention	61908295	61908380	.	-	.	gene_id "intron_retention.985"; transcript_id "intron_retention.985"; gene_name "CUFF.1975"; flanks "61908295-,61908380^"; structure "0,1^2-"; splice_chain ",61908295^61908380-"; psi "0.333300";
chr9	juncbase	intron_retention	130953711	130953141	.	-	.	gene_id "intron_retention.986"; transcript_id "intron_retention.986"; gene_name "CUFF.1975"; flanks "130953711-,130953141^"; structure "0,1^2-"; splice_chain ",130953711^130953141-"; psi "0.028800";
chr18	juncbase	jcn_only_AD	55713250	55833020	.	-	.	gene_id "jcn_only_AD.1016"; transcript_id "jcn_only_AD.1016"; gene_name "CUFF.1975"; flanks "55713250-,55833020-"; structure "1^,2^"; splice_chain "55713250^,55816791^"; psi "0.536715";
chr18	juncbase	jcn_only_AD	55711940	55833020	.	-	.	gene_id "jcn_only_AD.1017"; transcript_id "jcn_only_AD.1017"; gene_name "CUFF.1975"; flanks "55711940-,55833020-"; structure "1^,2^"; splice_chain "55711940^,55816791^"; psi "0.373020";
chr18	juncbase	jcn_only_AD	55758859	55833020	.	-	.	gene_id "jcn_only_AD.1018"; transcript_id "jcn_only_AD.1018"; gene_name "CUFF.1975"; flanks "55758859-,55833020-"; structure "1^,2^"; splice_chain "55758859^,55816791^"; psi "0.200245";
chr18	juncbase	jcn_only_AD	55713020	55833020	.	-	.	gene_id "jcn_only_AD.1019"; transcript_id "jcn_only_AD.1019"; gene_name "CUFF.1975"; flanks "55713020-,55833020-"; structure "1^,2^"; splice_chain "55713020^,55816791^"; psi "0.567550";
chr18	juncbase	jcn_only_AD	55712847	55833020	.	-	.	gene_id "jcn_only_AD.1020"; transcript_id "jcn_only_AD.1020"; gene_name "CUFF.1975"; flanks "55712847-,55833020-"; structure "1^,2^"; splice_chain "55712847^,55816791^"; psi "0.529878";
chr18	juncbase	jcn_only_AD	55714742	55833020	.	-	.	gene_id "jcn_only_AD.1021"; transcript_id "jcn_only_AD.1021"; gene_name "CUFF.1975"; flanks "55714742-,55833020-"; structure "1^,2^"; splice_chain "55714742^,55816791^"; psi "0.546055";
chr18	juncbase	jcn_only_AD	55722108	55833020	.	-	.	gene_id "jcn_only_AD.1022"; transcript_id "jcn_only_AD.1022"; gene_name "CUFF.1975"; flanks "55722108-,55833020-"; structure "1^,2^"; splice_chain "55722108^,55816791^"; psi "0.289058";
chr14	juncbase	jcn_only_AD	58894531	58896081	.	-	.	gene_id "jcn_only_AD.1023"; transcript_id "jcn_only_AD.1023"; gene_name "CUFF.1975"; flanks "58894531-,58896081-"; structure "1^,2^"; splice_chain "58894531^,58894575^"; psi "0.612270";
chr17	juncbase	intron_retention	35378313	35388911	.	-	.	gene_id "intron_retention.987"; transcript_id "intron_retention.987"; gene_name "CUFF.1975"; flanks "35378313-,35388911^"; structure "0,1^2-"; splice_chain ",35378313^35388911-"; psi "0.588200";
chr10	juncbase	jcn_only_AD	124145703	124151819	.	-	.	gene_id "jcn_only_AD.1024"; transcript_id "jcn_only_AD.1024"; gene_name "CUFF.1975"; flanks "124145703-,124151819-"; structure "1^,2^"; splice_chain "124145703^,124147499^"; psi "0.677656";
chr10	juncbase	jcn_only_AD	124134477	124151819	.	-	.	gene_id "jcn_only_AD.1025"; transcript_id "jcn_only_AD.1025"; gene_name "CUFF.1975"; flanks "124134477-,124151819-"; structure "1^,2^"; splice_chain "124134477^,124147499^"; psi "0.833940";
chr4	juncbase	jcn_only_AA	3957051	3954900	.	-	.	gene_id "jcn_only_AA.838"; transcript_id "jcn_only_AA.838"; gene_name "CUFF.1975"; flanks "3957051^,3954900^"; structure "1-,2-"; splice_chain "3956760-,3954900-"; psi "0.912800";
chr4	juncbase	jcn_only_AD	57308026	57312861	.	-	.	gene_id "jcn_only_AD.1026"; transcript_id "jcn_only_AD.1026"; gene_name "CUFF.1975"; flanks "57308026-,57312861-"; structure "1^,2^"; splice_chain "57308026^,57312543^"; psi "0.965200";
chr11	juncbase	jcn_only_AD	2192927	2190925	.	-	.	gene_id "jcn_only_AD.1027"; transcript_id "jcn_only_AD.1027"; gene_name "CUFF.1975"; flanks "2192927-,2190925-"; structure "1^,2^"; splice_chain "2192927^,2192915^"; psi "0.717400";
chr1	juncbase	cassette	1987001	1990980	.	-	.	gene_id "cassette.743"; transcript_id "cassette.743"; gene_name "CUFF.1975"; flanks "1987001^,1990980-"; structure "0,1-2^"; splice_chain ",1987923-1988012^"; psi "0.733500";
chr2	juncbase	cassette	242447421	242440211	.	-	.	gene_id "cassette.744"; transcript_id "cassette.744"; gene_name "CUFF.1975"; flanks "242447421^,242440211-"; structure "0,1-2^"; splice_chain ",242441123-242440893^"; psi "0.907400";
chr17	juncbase	jcn_only_AD	57784732	57775339	.	-	.	gene_id "jcn_only_AD.1028"; transcript_id "jcn_only_AD.1028"; gene_name "CUFF.1975"; flanks "57784732-,57775339-"; structure "1^,2^"; splice_chain "57784732^,57776232^"; psi "0.283300";
chr11	juncbase	jcn_only_AD	65486220	65486344	.	-	.	gene_id "jcn_only_AD.1029"; transcript_id "jcn_only_AD.1029"; gene_name "CUFF.1975"; flanks "65486220-,65486344-"; structure "1^,2^"; splice_chain "65486220^,65486246^"; psi "0.969800";
chr3	juncbase	cassette	132948195	133098596	.	-	.	gene_id "cassette.745"; transcript_id "cassette.745"; gene_name "CUFF.1975"; flanks "132948195^,133098596-"; structure "0,1-2^"; splice_chain ",133097186-133097400^"; psi "0.251000";
chr11	juncbase	jcn_only_AD	6633295	6632683	.	-	.	gene_id "jcn_only_AD.1030"; transcript_id "jcn_only_AD.1030"; gene_name "CUFF.1975"; flanks "6633295-,6632683-"; structure "1^,2^"; splice_chain "6633295^,6632895^"; psi "0.524900";
chr2	juncbase	intron_retention	242440893	242440262	.	-	.	gene_id "intron_retention.988"; transcript_id "intron_retention.988"; gene_name "CUFF.1975"; flanks "242440893-,242440262^"; structure "0,1^2-"; splice_chain ",242440893^242440262-"; psi "0.423200";
chr15	juncbase	jcn_only_AD	57211104	57212090	.	-	.	gene_id "jcn_only_AD.1031"; transcript_id "jcn_only_AD.1031"; gene_name "CUFF.1975"; flanks "57211104-,57212090-"; structure "1^,2^"; splice_chain "57211104^,57211426^"; psi "0.958500";
chr21	juncbase	jcn_only_AA	47572821	47571894	.	-	.	gene_id "jcn_only_AA.839"; transcript_id "jcn_only_AA.839"; gene_name "CUFF.1975"; flanks "47572821^,47571894^"; structure "1-,2-"; splice_chain "47571919-,47571894-"; psi "0.909100";
chr1	juncbase	jcn_only_AD	156921365	156918290	.	-	.	gene_id "jcn_only_AD.1032"; transcript_id "jcn_only_AD.1032"; gene_name "CUFF.1975"; flanks "156921365-,156918290-"; structure "1^,2^"; splice_chain "156921365^,156918365^"; psi "0.739100";
chr11	juncbase	intron_retention	3427945	3428852	.	-	.	gene_id "intron_retention.989"; transcript_id "intron_retention.989"; gene_name "CUFF.1975"; flanks "3427945-,3428852^"; structure "0,1^2-"; splice_chain ",3427945^3428852-"; psi "0.909100";
chr5	juncbase	jcn_only_AD	60194103	60186913	.	-	.	gene_id "jcn_only_AD.1033"; transcript_id "jcn_only_AD.1033"; gene_name "CUFF.1975"; flanks "60194103-,60186913-"; structure "1^,2^"; splice_chain "60194103^,60187864^"; psi "0.600000";
chr11	juncbase	intron_retention	5686886	5686625	.	-	.	gene_id "intron_retention.990"; transcript_id "intron_retention.990"; gene_name "CUFF.1975"; flanks "5686886-,5686625^"; structure "0,1^2-"; splice_chain ",5686886^5686625-"; psi "0.052900";
chr9	juncbase	cassette	15225915	15214247	.	-	.	gene_id "cassette.746"; transcript_id "cassette.746"; gene_name "CUFF.1975"; flanks "15225915^,15214247-"; structure "0,1-2^"; splice_chain ",15224503-15224358^"; psi "0.210400";
chr16	juncbase	intron_retention	23507010	23505699	.	-	.	gene_id "intron_retention.991"; transcript_id "intron_retention.991"; gene_name "CUFF.1975"; flanks "23507010-,23505699^"; structure "0,1^2-"; splice_chain ",23507010^23505699-"; psi "0.054300";
chr1	juncbase	cassette	230385017	230390964	.	-	.	gene_id "cassette.747"; transcript_id "cassette.747"; gene_name "CUFF.1975"; flanks "230385017^,230390964-"; structure "0,1-2^"; splice_chain ",230386203-230386306^"; psi "0.740000";
chr19	juncbase	intron_retention	50308833	50308982	.	-	.	gene_id "intron_retention.992"; transcript_id "intron_retention.992"; gene_name "CUFF.1975"; flanks "50308833-,50308982^"; structure "0,1^2-"; splice_chain ",50308833^50308982-"; psi "0.046500";
chr7	juncbase	jcn_only_AD	73107999	73111935	.	-	.	gene_id "jcn_only_AD.1034"; transcript_id "jcn_only_AD.1034"; gene_name "CUFF.1975"; flanks "73107999-,73111935-"; structure "1^,2^"; splice_chain "73107999^,73108380^"; psi "0.057495";
chr7	juncbase	jcn_only_AD	73106976	73111935	.	-	.	gene_id "jcn_only_AD.1035"; transcript_id "jcn_only_AD.1035"; gene_name "CUFF.1975"; flanks "73106976-,73111935-"; structure "1^,2^"; splice_chain "73106976^,73108380^"; psi "0.367068";
chr17	juncbase	intron_retention	40739852	40738155	.	-	.	gene_id "intron_retention.993"; transcript_id "intron_retention.993"; gene_name "CUFF.1975"; flanks "40739852-,40738155^"; structure "0,1^2-"; splice_chain ",40739852^40738155-"; psi "0.798800";
chr3	juncbase	intron_retention	38051395	38051302	.	-	.	gene_id "intron_retention.994"; transcript_id "intron_retention.994"; gene_name "CUFF.1975"; flanks "38051395-,38051302^"; structure "0,1^2-"; splice_chain ",38051395^38051302-"; psi "0.051700";
chr17	juncbase	intron_retention	61905283	61905479	.	-	.	gene_id "intron_retention.995"; transcript_id "intron_retention.995"; gene_name "CUFF.1975"; flanks "61905283-,61905479^"; structure "0,1^2-"; splice_chain ",61905283^61905479-"; psi "0.767100";
chr19	juncbase	jcn_only_AA	33953901	33904548	.	-	.	gene_id "jcn_only_AA.840"; transcript_id "jcn_only_AA.840"; gene_name "CUFF.1975"; flanks "33953901^,33904548^"; structure "1-,2-"; splice_chain "33904549-,33904548-"; psi "0.000300";
chr9	juncbase	cassette	130952608	130948055	.	-	.	gene_id "cassette.748"; transcript_id "cassette.748"; gene_name "CUFF.1975"; flanks "130952608^,130948055-"; structure "0,1-2^"; splice_chain ",130950213-130950142^"; psi "0.875700";
chr9	juncbase	cassette	130952967	130948055	.	-	.	gene_id "cassette.749"; transcript_id "cassette.749"; gene_name "CUFF.1975"; flanks "130952967^,130948055-"; structure "0,1-2^"; splice_chain ",130950213-130950142^"; psi "0.875700";
chr16	juncbase	intron_retention	3115711	3115782	.	-	.	gene_id "intron_retention.996"; transcript_id "intron_retention.996"; gene_name "CUFF.1975"; flanks "3115711-,3115782^"; structure "0,1^2-"; splice_chain ",3115711^3115782-"; psi "0.983200";
chr14	juncbase	jcn_only_AD	76368567	76420767	.	-	.	gene_id "jcn_only_AD.1036"; transcript_id "jcn_only_AD.1036"; gene_name "CUFF.1975"; flanks "76368567-,76420767-"; structure "1^,2^"; splice_chain "76368567^,76373020^"; psi "0.170397";
chr7	juncbase	intron_retention	127251999	127251902	.	-	.	gene_id "intron_retention.997"; transcript_id "intron_retention.997"; gene_name "CUFF.1975"; flanks "127251999-,127251902^"; structure "0,1^2-"; splice_chain ",127251999^127251902-"; psi "0.447800";
chr2	juncbase	intron_retention	220099010	220099548	.	-	.	gene_id "intron_retention.998"; transcript_id "intron_retention.998"; gene_name "CUFF.1975"; flanks "220099010-,220099548^"; structure "0,1^2-"; splice_chain ",220099010^220099548-"; psi "0.747100";
chr10	juncbase	cassette	70679737	70694555	.	-	.	gene_id "cassette.750"; transcript_id "cassette.750"; gene_name "CUFF.1975"; flanks "70679737^,70694555-"; structure "0,1-2^"; splice_chain ",70693955-70694116^"; psi "0.064300";
chr11	juncbase	intron_retention	407062	406993	.	-	.	gene_id "intron_retention.999"; transcript_id "intron_retention.999"; gene_name "CUFF.1975"; flanks "407062-,406993^"; structure "0,1^2-"; splice_chain ",407062^406993-"; psi "0.182600";
chr21	juncbase	jcn_only_AD	15664068	15678017	.	-	.	gene_id "jcn_only_AD.1037"; transcript_id "jcn_only_AD.1037"; gene_name "CUFF.1975"; flanks "15664068-,15678017-"; structure "1^,2^"; splice_chain "15664068^,15676681^"; psi "0.875000";
chr6	juncbase	intron_retention	114279813	114277857	.	-	.	gene_id "intron_retention.1000"; transcript_id "intron_retention.1000"; gene_name "CUFF.1975"; flanks "114279813-,114277857^"; structure "0,1^2-"; splice_chain ",114279813^114277857-"; psi "0.383100";
chr2	juncbase	intron_retention	27729446	27729655	.	-	.	gene_id "intron_retention.1001"; transcript_id "intron_retention.1001"; gene_name "CUFF.1975"; flanks "27729446-,27729655^"; structure "0,1^2-"; splice_chain ",27729446^27729655-"; psi "0.134300";
chr19	juncbase	cassette	52909896	52918192	.	-	.	gene_id "cassette.751"; transcript_id "cassette.751"; gene_name "CUFF.1975"; flanks "52909896^,52918192-"; structure "0,1-2^"; splice_chain ",52917457-52917621^"; psi "0.500000";
chr19	juncbase	cassette	52909896	52918377	.	-	.	gene_id "cassette.752"; transcript_id "cassette.752"; gene_name "CUFF.1975"; flanks "52909896^,52918377-"; structure "0,1-2^"; splice_chain ",52917457-52917621^"; psi "0.500000";
chr10	juncbase	cassette	35464633	35468062	.	-	.	gene_id "cassette.753"; transcript_id "cassette.753"; gene_name "CUFF.1975"; flanks "35464633^,35468062-"; structure "0,1-2^"; splice_chain ",35467817-35467914^"; psi "0.969700";
chr5	juncbase	intron_retention	178044345	178043949	.	-	.	gene_id "intron_retention.1002"; transcript_id "intron_retention.1002"; gene_name "CUFF.1975"; flanks "178044345-,178043949^"; structure "0,1^2-"; splice_chain ",178044345^178043949-"; psi "0.660900";
chrX	juncbase	jcn_only_AA	20285157	20252932	.	-	.	gene_id "jcn_only_AA.841"; transcript_id "jcn_only_AA.841"; gene_name "CUFF.1975"; flanks "20285157^,20252932^"; structure "1-,2-"; splice_chain "20258787-,20252932-"; psi "0.761900";
chr3	juncbase	jcn_only_AA	133913926	133910818	.	-	.	gene_id "jcn_only_AA.842"; transcript_id "jcn_only_AA.842"; gene_name "CUFF.1975"; flanks "133913926^,133910818^"; structure "1-,2-"; splice_chain "133910827-,133910818-"; psi "0.462700";
chr14	juncbase	intron_retention	104204031	104201416	.	-	.	gene_id "intron_retention.1003"; transcript_id "intron_retention.1003"; gene_name "CUFF.1975"; flanks "104204031-,104201416^"; structure "0,1^2-"; splice_chain ",104204031^104201416-"; psi "0.933600";
chr15	juncbase	jcn_only_AD	44884529	44881612	.	-	.	gene_id "jcn_only_AD.1038"; transcript_id "jcn_only_AD.1038"; gene_name "CUFF.1975"; flanks "44884529-,44881612-"; structure "1^,2^"; splice_chain "44884529^,44882619^"; psi "0.770300";
chr14	juncbase	jcn_only_AA	75138111	75136829	.	-	.	gene_id "jcn_only_AA.843"; transcript_id "jcn_only_AA.843"; gene_name "CUFF.1975"; flanks "75138111^,75136829^"; structure "1-,2-"; splice_chain "75137574-,75136829-"; psi "0.077500";
chr19	juncbase	jcn_only_AA	33892627	33882385	.	-	.	gene_id "jcn_only_AA.844"; transcript_id "jcn_only_AA.844"; gene_name "CUFF.1975"; flanks "33892627^,33882385^"; structure "1-,2-"; splice_chain "33887061-,33882385-"; psi "0.898400";
chr17	juncbase	jcn_only_AD	36348511	36345478	.	-	.	gene_id "jcn_only_AD.1039"; transcript_id "jcn_only_AD.1039"; gene_name "CUFF.1975"; flanks "36348511-,36345478-"; structure "1^,2^"; splice_chain "36348511^,36346438^"; psi "0.333300";
chr7	juncbase	jcn_only_AD	136554165	136676934	.	-	.	gene_id "jcn_only_AD.1040"; transcript_id "jcn_only_AD.1040"; gene_name "CUFF.1975"; flanks "136554165-,136676934-"; structure "1^,2^"; splice_chain "136554165^,136635827^"; psi "0.695700";
chr6	juncbase	jcn_only_AD	114292021	114289860	.	-	.	gene_id "jcn_only_AD.1041"; transcript_id "jcn_only_AD.1041"; gene_name "CUFF.1975"; flanks "114292021-,114289860-"; structure "1^,2^"; splice_chain "114292021^,114291644^"; psi "0.717100";
chr22	juncbase	jcn_only_AA	37699443	37705253	.	-	.	gene_id "jcn_only_AA.845"; transcript_id "jcn_only_AA.845"; gene_name "CUFF.1975"; flanks "37699443^,37705253^"; structure "1-,2-"; splice_chain "37700213-,37705253-"; psi "0.529400";
chrX	juncbase	cassette	100182959	100170072	.	-	.	gene_id "cassette.754"; transcript_id "cassette.754"; gene_name "CUFF.1975"; flanks "100182959^,100170072-"; structure "0,1-2^"; splice_chain ",100178050-100177782^"; psi "0.387100";
chr11	juncbase	intron_retention	57310653	57310732	.	-	.	gene_id "intron_retention.1004"; transcript_id "intron_retention.1004"; gene_name "CUFF.1975"; flanks "57310653-,57310732^"; structure "0,1^2-"; splice_chain ",57310653^57310732-"; psi "0.973300";
chr22	juncbase	intron_retention	25855482	25856834	.	-	.	gene_id "intron_retention.1005"; transcript_id "intron_retention.1005"; gene_name "CUFF.1975"; flanks "25855482-,25856834^"; structure "0,1^2-"; splice_chain ",25855482^25856834-"; psi "0.378800";
chr19	juncbase	intron_retention	12918143	12918233	.	-	.	gene_id "intron_retention.1006"; transcript_id "intron_retention.1006"; gene_name "CUFF.1975"; flanks "12918143-,12918233^"; structure "0,1^2-"; splice_chain ",12918143^12918233-"; psi "0.003000";
chr15	juncbase	intron_retention	40531336	40545379	.	-	.	gene_id "intron_retention.1007"; transcript_id "intron_retention.1007"; gene_name "CUFF.1975"; flanks "40531336-,40545379^"; structure "0,1^2-"; splice_chain ",40531336^40545379-"; psi "0.187500";
chr1	juncbase	jcn_only_AA	161953386	161953125	.	-	.	gene_id "jcn_only_AA.846"; transcript_id "jcn_only_AA.846"; gene_name "CUFF.1975"; flanks "161953386^,161953125^"; structure "1-,2-"; splice_chain "161953195-,161953125-"; psi "0.947500";
chr2	juncbase	intron_retention	242590526	242590679	.	-	.	gene_id "intron_retention.1008"; transcript_id "intron_retention.1008"; gene_name "CUFF.1975"; flanks "242590526-,242590679^"; structure "0,1^2-"; splice_chain ",242590526^242590679-"; psi "0.042300";
chr11	juncbase	jcn_only_AA	65479750	65479850	.	-	.	gene_id "jcn_only_AA.847"; transcript_id "jcn_only_AA.847"; gene_name "CUFF.1975"; flanks "65479750^,65479850^"; structure "1-,2-"; splice_chain "65479821-,65479850-"; psi "0.768800";
chr10	juncbase	jcn_only_AD	46168127	46159290	.	-	.	gene_id "jcn_only_AD.1042"; transcript_id "jcn_only_AD.1042"; gene_name "CUFF.1975"; flanks "46168127-,46159290-"; structure "1^,2^"; splice_chain "46168127^,46167698^"; psi "0.137715";
chr10	juncbase	jcn_only_AD	46167720	46159290	.	-	.	gene_id "jcn_only_AD.1043"; transcript_id "jcn_only_AD.1043"; gene_name "CUFF.1975"; flanks "46167720-,46159290-"; structure "1^,2^"; splice_chain "46167720^,46167698^"; psi "0.066444";
chr11	juncbase	jcn_only_AD	8947010	8941997	.	-	.	gene_id "jcn_only_AD.1044"; transcript_id "jcn_only_AD.1044"; gene_name "CUFF.1975"; flanks "8947010-,8941997-"; structure "1^,2^"; splice_chain "8947010^,8942841^"; psi "0.534500";
chr1	juncbase	cassette	161008670	160991277	.	-	.	gene_id "cassette.755"; transcript_id "cassette.755"; gene_name "CUFF.1975"; flanks "161008670^,160991277-"; structure "0,1-2^"; splice_chain ",160992617-160992540^"; psi "0.589700";
chr17	juncbase	intron_retention	79225293	79220861	.	-	.	gene_id "intron_retention.1009"; transcript_id "intron_retention.1009"; gene_name "CUFF.1975"; flanks "79225293-,79220861^"; structure "0,1^2-"; splice_chain ",79225293^79220861-"; psi "0.666700";
chr21	juncbase	jcn_only_AD	15685441	15688522	.	-	.	gene_id "jcn_only_AD.1045"; transcript_id "jcn_only_AD.1045"; gene_name "CUFF.1975"; flanks "15685441-,15688522-"; structure "1^,2^"; splice_chain "15685441^,15685452^"; psi "0.179500";
chr9	juncbase	intron_retention	130952998	130948008	.	-	.	gene_id "intron_retention.1010"; transcript_id "intron_retention.1010"; gene_name "CUFF.1975"; flanks "130952998-,130948008^"; structure "0,1^2-"; splice_chain ",130952998^130948008-"; psi "0.993900";
chr4	juncbase	jcn_only_AA	152097686	152096826	.	-	.	gene_id "jcn_only_AA.848"; transcript_id "jcn_only_AA.848"; gene_name "CUFF.1975"; flanks "152097686^,152096826^"; structure "1-,2-"; splice_chain "152096847-,152096826-"; psi "0.648600";
chr14	juncbase	cassette	104263708	104245158	.	-	.	gene_id "cassette.756"; transcript_id "cassette.756"; gene_name "CUFF.1975"; flanks "104263708^,104245158-"; structure "0,1-2^"; splice_chain ",104251251-104251132^"; psi "0.843600";
chr19	juncbase	jcn_only_AA	52085135	52092801	.	-	.	gene_id "jcn_only_AA.849"; transcript_id "jcn_only_AA.849"; gene_name "CUFF.1975"; flanks "52085135^,52092801^"; structure "1-,2-"; splice_chain "52089880-,52092801-"; psi "0.531200";
chr12	juncbase	cassette	53848653	53849245	.	-	.	gene_id "cassette.757"; transcript_id "cassette.757"; gene_name "CUFF.1975"; flanks "53848653^,53849245-"; structure "0,1-2^"; splice_chain ",53849131-53849154^"; psi "0.809500";
chr4	juncbase	jcn_only_AA	120379232	120381898	.	-	.	gene_id "jcn_only_AA.850"; transcript_id "jcn_only_AA.850"; gene_name "CUFF.1975"; flanks "120379232^,120381898^"; structure "1-,2-"; splice_chain "120381338-,120381898-"; psi "0.500000";
chr6	juncbase	intron_retention	43480499	43480301	.	-	.	gene_id "intron_retention.1011"; transcript_id "intron_retention.1011"; gene_name "CUFF.1975"; flanks "43480499-,43480301^"; structure "0,1^2-"; splice_chain ",43480499^43480301-"; psi "0.772500";
chr3	juncbase	jcn_only_AA	186769134	186790637	.	-	.	gene_id "jcn_only_AA.851"; transcript_id "jcn_only_AA.851"; gene_name "CUFF.1975"; flanks "186769134^,186790637^"; structure "1-,2-"; splice_chain "186782308-,186790637-"; psi "0.896300";
chr17	juncbase	intron_retention	79895104	79894737	.	-	.	gene_id "intron_retention.1012"; transcript_id "intron_retention.1012"; gene_name "CUFF.1975"; flanks "79895104-,79894737^"; structure "0,1^2-"; splice_chain ",79895104^79894737-"; psi "0.537000";
chr18	juncbase	jcn_only_AA	67623991	67563281	.	-	.	gene_id "jcn_only_AA.852"; transcript_id "jcn_only_AA.852"; gene_name "CUFF.1975"; flanks "67623991^,67563281^"; structure "1-,2-"; splice_chain "67614768-,67563281-"; psi "0.275616";
chr18	juncbase	jcn_only_AA	67623991	67614669	.	-	.	gene_id "jcn_only_AA.853"; transcript_id "jcn_only_AA.853"; gene_name "CUFF.1975"; flanks "67623991^,67614669^"; structure "1-,2-"; splice_chain "67614768-,67614669-"; psi "0.080049";
chr18	juncbase	cassette	61077523	61071059	.	-	.	gene_id "cassette.758"; transcript_id "cassette.758"; gene_name "CUFF.1975"; flanks "61077523^,61071059-"; structure "0,1-2^"; splice_chain ",61074732-61074665^"; psi "0.118100";
chr15	juncbase	jcn_only_AA	83378346	83358205	.	-	.	gene_id "jcn_only_AA.854"; transcript_id "jcn_only_AA.854"; gene_name "CUFF.1975"; flanks "83378346^,83358205^"; structure "1-,2-"; splice_chain "83358686-,83358205-"; psi "0.898000";
chr2	juncbase	jcn_only_AD	186662253	186678272	.	-	.	gene_id "jcn_only_AD.1046"; transcript_id "jcn_only_AD.1046"; gene_name "CUFF.1975"; flanks "186662253-,186678272-"; structure "1^,2^"; splice_chain "186662253^,186673860^"; psi "0.345500";
chr1	juncbase	jcn_only_AD	156909340	156908305	.	-	.	gene_id "jcn_only_AD.1047"; transcript_id "jcn_only_AD.1047"; gene_name "CUFF.1975"; flanks "156909340-,156908305-"; structure "1^,2^"; splice_chain "156909340^,156908941^"; psi "0.627500";
chr2	juncbase	intron_retention	220098155	220098437	.	-	.	gene_id "intron_retention.1013"; transcript_id "intron_retention.1013"; gene_name "CUFF.1975"; flanks "220098155-,220098437^"; structure "0,1^2-"; splice_chain ",220098155^220098437-"; psi "0.274500";
chr9	juncbase	jcn_only_AD	133355187	133355772	.	-	.	gene_id "jcn_only_AD.1048"; transcript_id "jcn_only_AD.1048"; gene_name "CUFF.1975"; flanks "133355187-,133355772-"; structure "1^,2^"; splice_chain "133355187^,133355286^"; psi "0.728000";
chr5	juncbase	jcn_only_AA	36177394	36183942	.	-	.	gene_id "jcn_only_AA.855"; transcript_id "jcn_only_AA.855"; gene_name "CUFF.1975"; flanks "36177394^,36183942^"; structure "1-,2-"; splice_chain "36181920-,36183942-"; psi "0.662700";
chr3	juncbase	jcn_only_AD	107591815	107576049	.	-	.	gene_id "jcn_only_AD.1049"; transcript_id "jcn_only_AD.1049"; gene_name "CUFF.1975"; flanks "107591815-,107576049-"; structure "1^,2^"; splice_chain "107591815^,107586158^"; psi "0.525949";
chr17	juncbase	cassette	35378313	35413901	.	-	.	gene_id "cassette.759"; transcript_id "cassette.759"; gene_name "CUFF.1975"; flanks "35378313^,35413901-"; structure "0,1-2^"; splice_chain ",35388911-35388982^"; psi "0.361300";
chr11	juncbase	jcn_only_AA	2189096	2188715	.	-	.	gene_id "jcn_only_AA.856"; transcript_id "jcn_only_AA.856"; gene_name "CUFF.1975"; flanks "2189096^,2188715^"; structure "1-,2-"; splice_chain "2188746-,2188715-"; psi "0.931000";
chr2	juncbase	jcn_only_AD	3383610	3391391	.	-	.	gene_id "jcn_only_AD.1050"; transcript_id "jcn_only_AD.1050"; gene_name "CUFF.1975"; flanks "3383610-,3391391-"; structure "1^,2^"; splice_chain "3383610^,3383647^"; psi "0.080000";
chr12	juncbase	jcn_only_AD	113600737	113599802	.	-	.	gene_id "jcn_only_AD.1051"; transcript_id "jcn_only_AD.1051"; gene_name "CUFF.1975"; flanks "113600737-,113599802-"; structure "1^,2^"; splice_chain "113600737^,113600701^"; psi "0.558400";
chr11	juncbase	intron_retention	829540	829986	.	-	.	gene_id "intron_retention.1014"; transcript_id "intron_retention.1014"; gene_name "CUFF.1975"; flanks "829540-,829986^"; structure "0,1^2-"; splice_chain ",829540^829986-"; psi "0.085600";
chr3	juncbase	jcn_only_AA	49365119	49343321	.	-	.	gene_id "jcn_only_AA.857"; transcript_id "jcn_only_AA.857"; gene_name "CUFF.1975"; flanks "49365119^,49343321^"; structure "1-,2-"; splice_chain "49363278-,49343321-"; psi "0.153200";
chr2	juncbase	cassette	175779786	175711685	.	-	.	gene_id "cassette.760"; transcript_id "cassette.760"; gene_name "CUFF.1975"; flanks "175779786^,175711685-"; structure "0,1-2^"; splice_chain ",175742856-175742568^"; psi "0.675800";
chr2	juncbase	intron_retention	38244378	38244721	.	-	.	gene_id "intron_retention.1015"; transcript_id "intron_retention.1015"; gene_name "CUFF.1975"; flanks "38244378-,38244721^"; structure "0,1^2-"; splice_chain ",38244378^38244721-"; psi "0.917300";
chr8	juncbase	jcn_only_AD	56685786	56676539	.	-	.	gene_id "jcn_only_AD.1052"; transcript_id "jcn_only_AD.1052"; gene_name "CUFF.1975"; flanks "56685786-,56676539-"; structure "1^,2^"; splice_chain "56685786^,56685535^"; psi "0.632751";
chr8	juncbase	jcn_only_AD	56685828	56676539	.	-	.	gene_id "jcn_only_AD.1053"; transcript_id "jcn_only_AD.1053"; gene_name "CUFF.1975"; flanks "56685828-,56676539-"; structure "1^,2^"; splice_chain "56685828^,56685535^"; psi "0.779266";
chr20	juncbase	cassette	30115385	30125982	.	-	.	gene_id "cassette.761"; transcript_id "cassette.761"; gene_name "CUFF.1975"; flanks "30115385^,30125982-"; structure "0,1-2^"; splice_chain ",30115725-30115853^"; psi "0.606500";
chr10	juncbase	jcn_only_AD	73921296	73912746	.	-	.	gene_id "jcn_only_AD.1054"; transcript_id "jcn_only_AD.1054"; gene_name "CUFF.1975"; flanks "73921296-,73912746-"; structure "1^,2^"; splice_chain "73921296^,73918704^"; psi "0.712300";
chr12	juncbase	jcn_only_AA	48298738	48272898	.	-	.	gene_id "jcn_only_AA.858"; transcript_id "jcn_only_AA.858"; gene_name "CUFF.1975"; flanks "48298738^,48272898^"; structure "1-,2-"; splice_chain "48293741-,48272898-"; psi "0.630946";
chr12	juncbase	jcn_only_AA	48298738	48276557	.	-	.	gene_id "jcn_only_AA.859"; transcript_id "jcn_only_AA.859"; gene_name "CUFF.1975"; flanks "48298738^,48276557^"; structure "1-,2-"; splice_chain "48293741-,48276557-"; psi "0.802941";
chr11	juncbase	intron_retention	61630541	61630754	.	-	.	gene_id "intron_retention.1016"; transcript_id "intron_retention.1016"; gene_name "CUFF.1975"; flanks "61630541-,61630754^"; structure "0,1^2-"; splice_chain ",61630541^61630754-"; psi "0.164300";
chr15	juncbase	intron_retention	77471132	77470365	.	-	.	gene_id "intron_retention.1017"; transcript_id "intron_retention.1017"; gene_name "CUFF.1975"; flanks "77471132-,77470365^"; structure "0,1^2-"; splice_chain ",77471132^77470365-"; psi "0.171400";
chr16	juncbase	jcn_only_AA	63651597	63565208	.	-	.	gene_id "jcn_only_AA.860"; transcript_id "jcn_only_AA.860"; gene_name "CUFF.1975"; flanks "63651597^,63565208^"; structure "1-,2-"; splice_chain "63566835-,63565208-"; psi "0.837600";
chr2	juncbase	jcn_only_AD	175689162	175677210	.	-	.	gene_id "jcn_only_AD.1055"; transcript_id "jcn_only_AD.1055"; gene_name "CUFF.1975"; flanks "175689162-,175677210-"; structure "1^,2^"; splice_chain "175689162^,175686457^"; psi "0.718100";
chr2	juncbase	jcn_only_AD	109068922	109085436	.	-	.	gene_id "jcn_only_AD.1056"; transcript_id "jcn_only_AD.1056"; gene_name "CUFF.1975"; flanks "109068922-,109085436-"; structure "1^,2^"; splice_chain "109068922^,109079141^"; psi "0.426200";
chr11	juncbase	intron_retention	119056661	119057325	.	-	.	gene_id "intron_retention.1018"; transcript_id "intron_retention.1018"; gene_name "CUFF.1975"; flanks "119056661-,119057325^"; structure "0,1^2-"; splice_chain ",119056661^119057325-"; psi "0.894300";
chr17	juncbase	cassette	15603091	15604466	.	-	.	gene_id "cassette.762"; transcript_id "cassette.762"; gene_name "CUFF.1975"; flanks "15603091^,15604466-"; structure "0,1-2^"; splice_chain ",15603362-15603482^"; psi "0.726300";
chr11	juncbase	cassette	118926782	118926283	.	-	.	gene_id "cassette.763"; transcript_id "cassette.763"; gene_name "CUFF.1975"; flanks "118926782^,118926283-"; structure "0,1-2^"; splice_chain ",118926555-118926462^"; psi "0.966600";
chr11	juncbase	jcn_only_AA	63999436	63999902	.	-	.	gene_id "jcn_only_AA.861"; transcript_id "jcn_only_AA.861"; gene_name "CUFF.1975"; flanks "63999436^,63999902^"; structure "1-,2-"; splice_chain "63999866-,63999902-"; psi "0.376784";
chr11	juncbase	jcn_only_AA	63999436	64001366	.	-	.	gene_id "jcn_only_AA.862"; transcript_id "jcn_only_AA.862"; gene_name "CUFF.1975"; flanks "63999436^,64001366^"; structure "1-,2-"; splice_chain "63999866-,64001366-"; psi "0.137372";
chr11	juncbase	jcn_only_AA	63999436	63999982	.	-	.	gene_id "jcn_only_AA.863"; transcript_id "jcn_only_AA.863"; gene_name "CUFF.1975"; flanks "63999436^,63999982^"; structure "1-,2-"; splice_chain "63999866-,63999982-"; psi "0.446927";
chr11	juncbase	intron_retention	124756873	124756718	.	-	.	gene_id "intron_retention.1019"; transcript_id "intron_retention.1019"; gene_name "CUFF.1975"; flanks "124756873-,124756718^"; structure "0,1^2-"; splice_chain ",124756873^124756718-"; psi "0.166700";
chr1	juncbase	jcn_only_AA	171123353	171130297	.	-	.	gene_id "jcn_only_AA.864"; transcript_id "jcn_only_AA.864"; gene_name "CUFF.1975"; flanks "171123353^,171130297^"; structure "1-,2-"; splice_chain "171130203-,171130297-"; psi "0.053800";
chr19	juncbase	jcn_only_AA	10381902	10394805	.	-	.	gene_id "jcn_only_AA.865"; transcript_id "jcn_only_AA.865"; gene_name "CUFF.1975"; flanks "10381902^,10394805^"; structure "1-,2-"; splice_chain "10385441-,10394805-"; psi "0.313700";
chr2	juncbase	jcn_only_AD	207630471	207631368	.	-	.	gene_id "jcn_only_AD.1057"; transcript_id "jcn_only_AD.1057"; gene_name "CUFF.1975"; flanks "207630471-,207631368-"; structure "1^,2^"; splice_chain "207630471^,207630486^"; psi "0.223912";
chr2	juncbase	jcn_only_AD	207630378	207631368	.	-	.	gene_id "jcn_only_AD.1058"; transcript_id "jcn_only_AD.1058"; gene_name "CUFF.1975"; flanks "207630378-,207631368-"; structure "1^,2^"; splice_chain "207630378^,207630486^"; psi "0.388223";
chr2	juncbase	jcn_only_AD	207630242	207631368	.	-	.	gene_id "jcn_only_AD.1059"; transcript_id "jcn_only_AD.1059"; gene_name "CUFF.1975"; flanks "207630242-,207631368-"; structure "1^,2^"; splice_chain "207630242^,207630486^"; psi "0.359854";
chr17	juncbase	jcn_only_AD	79490668	79479386	.	-	.	gene_id "jcn_only_AD.1060"; transcript_id "jcn_only_AD.1060"; gene_name "CUFF.1975"; flanks "79490668-,79479386-"; structure "1^,2^"; splice_chain "79490668^,79481573^"; psi "0.915250";
chr1	juncbase	jcn_only_AD	247322308	247302059	.	-	.	gene_id "jcn_only_AD.1061"; transcript_id "jcn_only_AD.1061"; gene_name "CUFF.1975"; flanks "247322308-,247302059-"; structure "1^,2^"; splice_chain "247322308^,247313160^"; psi "0.888100";
chr11	juncbase	intron_retention	830132	830250	.	-	.	gene_id "intron_retention.1020"; transcript_id "intron_retention.1020"; gene_name "CUFF.1975"; flanks "830132-,830250^"; structure "0,1^2-"; splice_chain ",830132^830250-"; psi "0.019500";
chrX	juncbase	jcn_only_AD	148863658	148867664	.	-	.	gene_id "jcn_only_AD.1062"; transcript_id "jcn_only_AD.1062"; gene_name "CUFF.1975"; flanks "148863658-,148867664-"; structure "1^,2^"; splice_chain "148863658^,148867505^"; psi "0.526316";
chrX	juncbase	jcn_only_AD	148863690	148867664	.	-	.	gene_id "jcn_only_AD.1063"; transcript_id "jcn_only_AD.1063"; gene_name "CUFF.1975"; flanks "148863690-,148867664-"; structure "1^,2^"; splice_chain "148863690^,148867505^"; psi "0.660377";
chr8	juncbase	intron_retention	38006159	38005877	.	-	.	gene_id "intron_retention.1021"; transcript_id "intron_retention.1021"; gene_name "CUFF.1975"; flanks "38006159-,38005877^"; structure "0,1^2-"; splice_chain ",38006159^38005877-"; psi "0.312500";
chr10	juncbase	intron_retention	119768593	119765349	.	-	.	gene_id "intron_retention.1022"; transcript_id "intron_retention.1022"; gene_name "CUFF.1975"; flanks "119768593-,119765349^"; structure "0,1^2-"; splice_chain ",119768593^119765349-"; psi "0.558800";
chr21	juncbase	jcn_only_AD	15680940	15685265	.	-	.	gene_id "jcn_only_AD.1064"; transcript_id "jcn_only_AD.1064"; gene_name "CUFF.1975"; flanks "15680940-,15685265-"; structure "1^,2^"; splice_chain "15680940^,15681419^"; psi "0.887500";
chr3	juncbase	cassette	196229744	196214449	.	-	.	gene_id "cassette.764"; transcript_id "cassette.764"; gene_name "CUFF.1975"; flanks "196229744^,196214449-"; structure "0,1-2^"; splice_chain ",196215554-196215478^"; psi "0.222200";
chr11	juncbase	jcn_only_AA	8953689	8950975	.	-	.	gene_id "jcn_only_AA.866"; transcript_id "jcn_only_AA.866"; gene_name "CUFF.1975"; flanks "8953689^,8950975^"; structure "1-,2-"; splice_chain "8951080-,8950975-"; psi "0.250000";
chr15	juncbase	cassette	91298168	91303824	.	-	.	gene_id "cassette.765"; transcript_id "cassette.765"; gene_name "CUFF.1975"; flanks "91298168^,91303824-"; structure "0,1-2^"; splice_chain ",91303377-91303509^"; psi "0.157900";
chr9	juncbase	intron_retention	130953003	130948013	.	-	.	gene_id "intron_retention.1023"; transcript_id "intron_retention.1023"; gene_name "CUFF.1975"; flanks "130953003-,130948013^"; structure "0,1^2-"; splice_chain ",130953003^130948013-"; psi "0.230400";
chr18	juncbase	intron_retention	44272132	44268882	.	-	.	gene_id "intron_retention.1024"; transcript_id "intron_retention.1024"; gene_name "CUFF.1975"; flanks "44272132-,44268882^"; structure "0,1^2-"; splice_chain ",44272132^44268882-"; psi "0.604300";
chr9	juncbase	intron_retention	35079728	35079532	.	-	.	gene_id "intron_retention.1025"; transcript_id "intron_retention.1025"; gene_name "CUFF.1975"; flanks "35079728-,35079532^"; structure "0,1^2-"; splice_chain ",35079728^35079532-"; psi "0.764200";
chr11	juncbase	intron_retention	118403176	118403805	.	-	.	gene_id "intron_retention.1026"; transcript_id "intron_retention.1026"; gene_name "CUFF.1975"; flanks "118403176-,118403805^"; structure "0,1^2-"; splice_chain ",118403176^118403805-"; psi "0.515600";
chr19	juncbase	jcn_only_AD	17445920	17448817	.	-	.	gene_id "jcn_only_AD.1065"; transcript_id "jcn_only_AD.1065"; gene_name "CUFF.1975"; flanks "17445920-,17448817-"; structure "1^,2^"; splice_chain "17445920^,17448078^"; psi "0.130184";
chr19	juncbase	jcn_only_AD	17447843	17448817	.	-	.	gene_id "jcn_only_AD.1066"; transcript_id "jcn_only_AD.1066"; gene_name "CUFF.1975"; flanks "17447843-,17448817-"; structure "1^,2^"; splice_chain "17447843^,17448078^"; psi "0.638756";
chr19	juncbase	jcn_only_AD	17447966	17448817	.	-	.	gene_id "jcn_only_AD.1067"; transcript_id "jcn_only_AD.1067"; gene_name "CUFF.1975"; flanks "17447966-,17448817-"; structure "1^,2^"; splice_chain "17447966^,17448078^"; psi "0.055069";
chr12	juncbase	cassette	53856351	53859716	.	-	.	gene_id "cassette.766"; transcript_id "cassette.766"; gene_name "CUFF.1975"; flanks "53856351^,53859716-"; structure "0,1-2^"; splice_chain ",53858544-53858636^"; psi "0.341700";
chr12	juncbase	cassette	53856351	53861005	.	-	.	gene_id "cassette.767"; transcript_id "cassette.767"; gene_name "CUFF.1975"; flanks "53856351^,53861005-"; structure "0,1-2^"; splice_chain ",53858544-53858636^"; psi "0.341700";
chr21	juncbase	intron_retention	15646433	15646459	.	-	.	gene_id "intron_retention.1027"; transcript_id "intron_retention.1027"; gene_name "CUFF.1975"; flanks "15646433-,15646459^"; structure "0,1^2-"; splice_chain ",15646433^15646459-"; psi "0.687500";
chr2	juncbase	cassette	160569172	160585520	.	-	.	gene_id "cassette.768"; transcript_id "cassette.768"; gene_name "CUFF.1975"; flanks "160569172^,160585520-"; structure "0,1-2^"; splice_chain ",160572192-160572277^"; psi "0.876700";
chr8	juncbase	jcn_only_AA	144373937	144375142	.	-	.	gene_id "jcn_only_AA.867"; transcript_id "jcn_only_AA.867"; gene_name "CUFF.1975"; flanks "144373937^,144375142^"; structure "1-,2-"; splice_chain "144374313-,144375142-"; psi "0.863300";
chr2	juncbase	jcn_only_AD	171400498	171508138	.	-	.	gene_id "jcn_only_AD.1068"; transcript_id "jcn_only_AD.1068"; gene_name "CUFF.1975"; flanks "171400498-,171508138-"; structure "1^,2^"; splice_chain "171400498^,171503449^"; psi "0.845100";
chr6	juncbase	jcn_only_AD	90218968	90276553	.	-	.	gene_id "jcn_only_AD.1069"; transcript_id "jcn_only_AD.1069"; gene_name "CUFF.1975"; flanks "90218968-,90276553-"; structure "1^,2^"; splice_chain "90218968^,90272642^"; psi "0.587601";
chr6	juncbase	jcn_only_AD	90272617	90276553	.	-	.	gene_id "jcn_only_AD.1070"; transcript_id "jcn_only_AD.1070"; gene_name "CUFF.1975"; flanks "90272617-,90276553-"; structure "1^,2^"; splice_chain "90272617^,90272642^"; psi "0.924890";
chr6	juncbase	jcn_only_AD	90218677	90276553	.	-	.	gene_id "jcn_only_AD.1071"; transcript_id "jcn_only_AD.1071"; gene_name "CUFF.1975"; flanks "90218677-,90276553-"; structure "1^,2^"; splice_chain "90218677^,90272642^"; psi "0.859547";
chr6	juncbase	jcn_only_AD	90193277	90276553	.	-	.	gene_id "jcn_only_AD.1072"; transcript_id "jcn_only_AD.1072"; gene_name "CUFF.1975"; flanks "90193277-,90276553-"; structure "1^,2^"; splice_chain "90193277^,90272642^"; psi "0.487151";
chr15	juncbase	intron_retention	77756729	77759525	.	-	.	gene_id "intron_retention.1028"; transcript_id "intron_retention.1028"; gene_name "CUFF.1975"; flanks "77756729-,77759525^"; structure "0,1^2-"; splice_chain ",77756729^77759525-"; psi "0.126100";
chr17	juncbase	jcn_only_AA	29592357	29652838	.	-	.	gene_id "jcn_only_AA.868"; transcript_id "jcn_only_AA.868"; gene_name "CUFF.1975"; flanks "29592357^,29652838^"; structure "1-,2-"; splice_chain "29626528-,29652838-"; psi "0.611100";
chr16	juncbase	intron_retention	70389438	70390015	.	-	.	gene_id "intron_retention.1029"; transcript_id "intron_retention.1029"; gene_name "CUFF.1975"; flanks "70389438-,70390015^"; structure "0,1^2-"; splice_chain ",70389438^70390015-"; psi "0.108000";
chr19	juncbase	jcn_only_AD	1438427	1438806	.	-	.	gene_id "jcn_only_AD.1073"; transcript_id "jcn_only_AD.1073"; gene_name "CUFF.1975"; flanks "1438427-,1438806-"; structure "1^,2^"; splice_chain "1438427^,1438579^"; psi "0.441900";
chrX	juncbase	intron_retention	53570847	53569500	.	-	.	gene_id "intron_retention.1030"; transcript_id "intron_retention.1030"; gene_name "CUFF.1975"; flanks "53570847-,53569500^"; structure "0,1^2-"; splice_chain ",53570847^53569500-"; psi "0.071400";
chr17	juncbase	intron_retention	25969374	25970551	.	-	.	gene_id "intron_retention.1031"; transcript_id "intron_retention.1031"; gene_name "CUFF.1975"; flanks "25969374-,25970551^"; structure "0,1^2-"; splice_chain ",25969374^25970551-"; psi "0.090500";
chr17	juncbase	intron_retention	61904874	61905479	.	-	.	gene_id "intron_retention.1032"; transcript_id "intron_retention.1032"; gene_name "CUFF.1975"; flanks "61904874-,61905479^"; structure "0,1^2-"; splice_chain ",61904874^61905479-"; psi "0.658700";
chr11	juncbase	intron_retention	6638532	6638384	.	-	.	gene_id "intron_retention.1033"; transcript_id "intron_retention.1033"; gene_name "CUFF.1975"; flanks "6638532-,6638384^"; structure "0,1^2-"; splice_chain ",6638532^6638384-"; psi "0.375600";
chr11	juncbase	cassette	408695	407957	.	-	.	gene_id "cassette.769"; transcript_id "cassette.769"; gene_name "CUFF.1975"; flanks "408695^,407957-"; structure "0,1-2^"; splice_chain ",408206-408073^"; psi "0.902700";
chr2	juncbase	intron_retention	242598602	242606060	.	-	.	gene_id "intron_retention.1034"; transcript_id "intron_retention.1034"; gene_name "CUFF.1975"; flanks "242598602-,242606060^"; structure "0,1^2-"; splice_chain ",242598602^242606060-"; psi "0.212100";
chr11	juncbase	intron_retention	118919188	118919082	.	-	.	gene_id "intron_retention.1035"; transcript_id "intron_retention.1035"; gene_name "CUFF.1975"; flanks "118919188-,118919082^"; structure "0,1^2-"; splice_chain ",118919188^118919082-"; psi "0.102900";
chr17	juncbase	intron_retention	1617150	1616349	.	-	.	gene_id "intron_retention.1036"; transcript_id "intron_retention.1036"; gene_name "CUFF.1975"; flanks "1617150-,1616349^"; structure "0,1^2-"; splice_chain ",1617150^1616349-"; psi "0.690700";
chr4	juncbase	jcn_only_AD	3954838	3945099	.	-	.	gene_id "jcn_only_AD.1074"; transcript_id "jcn_only_AD.1074"; gene_name "CUFF.1975"; flanks "3954838-,3945099-"; structure "1^,2^"; splice_chain "3954838^,3949817^"; psi "0.771026";
chr14	juncbase	jcn_only_AA	76174050	76184204	.	-	.	gene_id "jcn_only_AA.869"; transcript_id "jcn_only_AA.869"; gene_name "CUFF.1975"; flanks "76174050^,76184204^"; structure "1-,2-"; splice_chain "76175522-,76184204-"; psi "0.133300";
chr12	juncbase	intron_retention	58018389	58018649	.	-	.	gene_id "intron_retention.1037"; transcript_id "intron_retention.1037"; gene_name "CUFF.1975"; flanks "58018389-,58018649^"; structure "0,1^2-"; splice_chain ",58018389^58018649-"; psi "0.604700";
chr2	juncbase	jcn_only_AA	174136239	174072386	.	-	.	gene_id "jcn_only_AA.870"; transcript_id "jcn_only_AA.870"; gene_name "CUFF.1975"; flanks "174136239^,174072386^"; structure "1-,2-"; splice_chain "174080564-,174072386-"; psi "0.948700";
chr12	juncbase	intron_retention	102874365	102874178	.	-	.	gene_id "intron_retention.1038"; transcript_id "intron_retention.1038"; gene_name "CUFF.1975"; flanks "102874365-,102874178^"; structure "0,1^2-"; splice_chain ",102874365^102874178-"; psi "0.457600";
chr11	juncbase	jcn_only_AA	118405070	118416834	.	-	.	gene_id "jcn_only_AA.871"; transcript_id "jcn_only_AA.871"; gene_name "CUFF.1975"; flanks "118405070^,118416834^"; structure "1-,2-"; splice_chain "118406223-,118416834-"; psi "0.500000";
chr12	juncbase	jcn_only_AD	113618786	113617810	.	-	.	gene_id "jcn_only_AD.1075"; transcript_id "jcn_only_AD.1075"; gene_name "CUFF.1975"; flanks "113618786-,113617810-"; structure "1^,2^"; splice_chain "113618786^,113618734^"; psi "0.333300";
chr16	juncbase	intron_retention	4409297	4408484	.	-	.	gene_id "intron_retention.1039"; transcript_id "intron_retention.1039"; gene_name "CUFF.1975"; flanks "4409297-,4408484^"; structure "0,1^2-"; splice_chain ",4409297^4408484-"; psi "0.071700";
chr5	juncbase	intron_retention	54460007	54460428	.	-	.	gene_id "intron_retention.1040"; transcript_id "intron_retention.1040"; gene_name "CUFF.1975"; flanks "54460007-,54460428^"; structure "0,1^2-"; splice_chain ",54460007^54460428-"; psi "0.621100";
chr3	juncbase	cassette	186648623	186769037	.	-	.	gene_id "cassette.770"; transcript_id "cassette.770"; gene_name "CUFF.1975"; flanks "186648623^,186769037-"; structure "0,1-2^"; splice_chain ",186681573-186681714^"; psi "0.645800";
chr16	juncbase	jcn_only_AD	21712348	21716490	.	-	.	gene_id "jcn_only_AD.1076"; transcript_id "jcn_only_AD.1076"; gene_name "CUFF.1975"; flanks "21712348-,21716490-"; structure "1^,2^"; splice_chain "21712348^,21712390^"; psi "0.983040";
chr3	juncbase	jcn_only_AA	19992553	20017093	.	-	.	gene_id "jcn_only_AA.872"; transcript_id "jcn_only_AA.872"; gene_name "CUFF.1975"; flanks "19992553^,20017093^"; structure "1-,2-"; splice_chain "20017079-,20017093-"; psi "0.218277";
chr3	juncbase	jcn_only_AA	19992553	20017135	.	-	.	gene_id "jcn_only_AA.873"; transcript_id "jcn_only_AA.873"; gene_name "CUFF.1975"; flanks "19992553^,20017135^"; structure "1-,2-"; splice_chain "20017079-,20017135-"; psi "0.031978";
chr14	juncbase	jcn_only_AA	75139534	75138186	.	-	.	gene_id "jcn_only_AA.874"; transcript_id "jcn_only_AA.874"; gene_name "CUFF.1975"; flanks "75139534^,75138186^"; structure "1-,2-"; splice_chain "75138723-,75138186-"; psi "0.578600";
chr1	juncbase	intron_retention	155180685	155181183	.	-	.	gene_id "intron_retention.1041"; transcript_id "intron_retention.1041"; gene_name "CUFF.1975"; flanks "155180685-,155181183^"; structure "0,1^2-"; splice_chain ",155180685^155181183-"; psi "0.574500";
chr4	juncbase	jcn_only_AD	69071753	69057034	.	-	.	gene_id "jcn_only_AD.1077"; transcript_id "jcn_only_AD.1077"; gene_name "CUFF.1975"; flanks "69071753-,69057034-"; structure "1^,2^"; splice_chain "69071753^,69057125^"; psi "0.416700";
chr17	juncbase	jcn_only_AD	79994067	79993939	.	-	.	gene_id "jcn_only_AD.1078"; transcript_id "jcn_only_AD.1078"; gene_name "CUFF.1975"; flanks "79994067-,79993939-"; structure "1^,2^"; splice_chain "79994067^,79994058^"; psi "0.768301";
chr15	juncbase	jcn_only_AD	50830906	50822126	.	-	.	gene_id "jcn_only_AD.1079"; transcript_id "jcn_only_AD.1079"; gene_name "CUFF.1975"; flanks "50830906-,50822126-"; structure "1^,2^"; splice_chain "50830906^,50824209^"; psi "0.904600";
chr22	juncbase	cassette	47189738	47274549	.	-	.	gene_id "cassette.771"; transcript_id "cassette.771"; gene_name "CUFF.1975"; flanks "47189738^,47274549-"; structure "0,1-2^"; splice_chain ",47193341-47193517^"; psi "0.313900";
chr5	juncbase	jcn_only_AA	56543042	56545281	.	-	.	gene_id "jcn_only_AA.875"; transcript_id "jcn_only_AA.875"; gene_name "CUFF.1975"; flanks "56543042^,56545281^"; structure "1-,2-"; splice_chain "56545236-,56545281-"; psi "0.119200";
chr2	juncbase	intron_retention	677289	676238	.	-	.	gene_id "intron_retention.1042"; transcript_id "intron_retention.1042"; gene_name "CUFF.1975"; flanks "677289-,676238^"; structure "0,1^2-"; splice_chain ",677289^676238-"; psi "0.914900";
chr12	juncbase	jcn_only_AA	344256	332400	.	-	.	gene_id "jcn_only_AA.876"; transcript_id "jcn_only_AA.876"; gene_name "CUFF.1975"; flanks "344256^,332400^"; structure "1-,2-"; splice_chain "336834-,332400-"; psi "0.158500";
chr22	juncbase	intron_retention	19420130	19420788	.	-	.	gene_id "intron_retention.1043"; transcript_id "intron_retention.1043"; gene_name "CUFF.1975"; flanks "19420130-,19420788^"; structure "0,1^2-"; splice_chain ",19420130^19420788-"; psi "0.079500";
chr11	juncbase	intron_retention	119291579	119291158	.	-	.	gene_id "intron_retention.1044"; transcript_id "intron_retention.1044"; gene_name "CUFF.1975"; flanks "119291579-,119291158^"; structure "0,1^2-"; splice_chain ",119291579^119291158-"; psi "0.598300";
chr5	juncbase	jcn_only_AD	1076253	1075605	.	-	.	gene_id "jcn_only_AD.1080"; transcript_id "jcn_only_AD.1080"; gene_name "CUFF.1975"; flanks "1076253-,1075605-"; structure "1^,2^"; splice_chain "1076253^,1076006^"; psi "0.218400";
chr19	juncbase	intron_retention	16212600	16213658	.	-	.	gene_id "intron_retention.1045"; transcript_id "intron_retention.1045"; gene_name "CUFF.1975"; flanks "16212600-,16213658^"; structure "0,1^2-"; splice_chain ",16212600^16213658-"; psi "0.421100";
chrX	juncbase	intron_retention	53564517	53563628	.	-	.	gene_id "intron_retention.1046"; transcript_id "intron_retention.1046"; gene_name "CUFF.1975"; flanks "53564517-,53563628^"; structure "0,1^2-"; splice_chain ",53564517^53563628-"; psi "0.094300";
chr2	juncbase	jcn_only_AA	109068922	109085436	.	-	.	gene_id "jcn_only_AA.877"; transcript_id "jcn_only_AA.877"; gene_name "CUFF.1975"; flanks "109068922^,109085436^"; structure "1-,2-"; splice_chain "109079044-,109085436-"; psi "0.575800";
chr17	juncbase	jcn_only_AA	61908295	61908396	.	-	.	gene_id "jcn_only_AA.878"; transcript_id "jcn_only_AA.878"; gene_name "CUFF.1975"; flanks "61908295^,61908396^"; structure "1-,2-"; splice_chain "61908380-,61908396-"; psi "0.946500";
chr7	juncbase	intron_retention	107643556	107643416	.	-	.	gene_id "intron_retention.1047"; transcript_id "intron_retention.1047"; gene_name "CUFF.1975"; flanks "107643556-,107643416^"; structure "0,1^2-"; splice_chain ",107643556^107643416-"; psi "0.168800";
chr2	juncbase	intron_retention	99232809	99234631	.	-	.	gene_id "intron_retention.1048"; transcript_id "intron_retention.1048"; gene_name "CUFF.1975"; flanks "99232809-,99234631^"; structure "0,1^2-"; splice_chain ",99232809^99234631-"; psi "0.541700";
chr5	juncbase	cassette	127417665	127396936	.	-	.	gene_id "cassette.772"; transcript_id "cassette.772"; gene_name "CUFF.1975"; flanks "127417665^,127396936-"; structure "0,1-2^"; splice_chain ",127412785-127412639^"; psi "0.591700";
chr5	juncbase	cassette	127418427	127396936	.	-	.	gene_id "cassette.773"; transcript_id "cassette.773"; gene_name "CUFF.1975"; flanks "127418427^,127396936-"; structure "0,1-2^"; splice_chain ",127412785-127412639^"; psi "0.591700";
chr9	juncbase	jcn_only_AA	130932299	130931798	.	-	.	gene_id "jcn_only_AA.879"; transcript_id "jcn_only_AA.879"; gene_name "CUFF.1975"; flanks "130932299^,130931798^"; structure "1-,2-"; splice_chain "130931979-,130931798-"; psi "0.934100";
chr4	juncbase	jcn_only_AD	124571484	124573942	.	-	.	gene_id "jcn_only_AD.1081"; transcript_id "jcn_only_AD.1081"; gene_name "CUFF.1975"; flanks "124571484-,124573942-"; structure "1^,2^"; splice_chain "124571484^,124571487^"; psi "0.448300";
chr7	juncbase	jcn_only_AA	86544039	86542381	.	-	.	gene_id "jcn_only_AA.880"; transcript_id "jcn_only_AA.880"; gene_name "CUFF.1975"; flanks "86544039^,86542381^"; structure "1-,2-"; splice_chain "86542520-,86542381-"; psi "0.166700";
chr5	juncbase	cassette	54603215	54593226	.	-	.	gene_id "cassette.774"; transcript_id "cassette.774"; gene_name "CUFF.1975"; flanks "54603215^,54593226-"; structure "0,1-2^"; splice_chain ",54594492-54594419^"; psi "0.163900";
chr15	juncbase	intron_retention	64445883	64446134	.	-	.	gene_id "intron_retention.1049"; transcript_id "intron_retention.1049"; gene_name "CUFF.1975"; flanks "64445883-,64446134^"; structure "0,1^2-"; splice_chain ",64445883^64446134-"; psi "0.101000";
chr12	juncbase	intron_retention	120135781	120135643	.	-	.	gene_id "intron_retention.1050"; transcript_id "intron_retention.1050"; gene_name "CUFF.1975"; flanks "120135781-,120135643^"; structure "0,1^2-"; splice_chain ",120135781^120135643-"; psi "0.095200";
chr10	juncbase	jcn_only_AD	80827145	80825576	.	-	.	gene_id "jcn_only_AD.1082"; transcript_id "jcn_only_AD.1082"; gene_name "CUFF.1975"; flanks "80827145-,80825576-"; structure "1^,2^"; splice_chain "80827145^,80826205^"; psi "0.989500";
chr9	juncbase	jcn_only_AA	34993441	34996392	.	-	.	gene_id "jcn_only_AA.881"; transcript_id "jcn_only_AA.881"; gene_name "CUFF.1975"; flanks "34993441^,34996392^"; structure "1-,2-"; splice_chain "34996262-,34996392-"; psi "0.090900";
chr5	juncbase	jcn_only_AA	127418427	127398192	.	-	.	gene_id "jcn_only_AA.882"; transcript_id "jcn_only_AA.882"; gene_name "CUFF.1975"; flanks "127418427^,127398192^"; structure "1-,2-"; splice_chain "127417883-,127398192-"; psi "0.552956";
chr7	juncbase	intron_retention	107234550	107236314	.	-	.	gene_id "intron_retention.1051"; transcript_id "intron_retention.1051"; gene_name "CUFF.1975"; flanks "107234550-,107236314^"; structure "0,1^2-"; splice_chain ",107234550^107236314-"; psi "0.780100";
chr14	juncbase	jcn_only_AD	75179636	75159031	.	-	.	gene_id "jcn_only_AD.1083"; transcript_id "jcn_only_AD.1083"; gene_name "CUFF.1975"; flanks "75179636-,75159031-"; structure "1^,2^"; splice_chain "75179636^,75179557^"; psi "0.708501";
chr10	juncbase	cassette	18280232	18284585	.	-	.	gene_id "cassette.775"; transcript_id "cassette.775"; gene_name "CUFF.1975"; flanks "18280232^,18284585-"; structure "0,1-2^"; splice_chain ",18282110-18282220^"; psi "0.786900";
chr11	juncbase	intron_retention	6633295	6632683	.	-	.	gene_id "intron_retention.1052"; transcript_id "intron_retention.1052"; gene_name "CUFF.1975"; flanks "6633295-,6632683^"; structure "0,1^2-"; splice_chain ",6633295^6632683-"; psi "0.311500";
chr22	juncbase	jcn_only_AD	24717291	24720188	.	-	.	gene_id "jcn_only_AD.1084"; transcript_id "jcn_only_AD.1084"; gene_name "CUFF.1975"; flanks "24717291-,24720188-"; structure "1^,2^"; splice_chain "24717291^,24718886^"; psi "0.459300";
chr15	juncbase	cassette	25225231	25244117	.	-	.	gene_id "cassette.776"; transcript_id "cassette.776"; gene_name "CUFF.1975"; flanks "25225231^,25244117-"; structure "0,1-2^"; splice_chain ",25226922-25227584^"; psi "0.735700";
chr6	juncbase	intron_retention	33243660	33243742	.	-	.	gene_id "intron_retention.1053"; transcript_id "intron_retention.1053"; gene_name "CUFF.1975"; flanks "33243660-,33243742^"; structure "0,1^2-"; splice_chain ",33243660^33243742-"; psi "0.176100";
chr9	juncbase	jcn_only_AD	130986668	130996300	.	-	.	gene_id "jcn_only_AD.1085"; transcript_id "jcn_only_AD.1085"; gene_name "CUFF.1975"; flanks "130986668-,130996300-"; structure "1^,2^"; splice_chain "130986668^,130994403^"; psi "0.895468";
chr9	juncbase	jcn_only_AD	130988452	130996300	.	-	.	gene_id "jcn_only_AD.1086"; transcript_id "jcn_only_AD.1086"; gene_name "CUFF.1975"; flanks "130988452-,130996300-"; structure "1^,2^"; splice_chain "130988452^,130994403^"; psi "0.834221";
chr11	juncbase	intron_retention	10821791	10821715	.	-	.	gene_id "intron_retention.1054"; transcript_id "intron_retention.1054"; gene_name "CUFF.1975"; flanks "10821791-,10821715^"; structure "0,1^2-"; splice_chain ",10821791^10821715-"; psi "0.864200";
chr11	juncbase	jcn_only_AA	6624634	6623445	.	-	.	gene_id "jcn_only_AA.883"; transcript_id "jcn_only_AA.883"; gene_name "CUFF.1975"; flanks "6624634^,6623445^"; structure "1-,2-"; splice_chain "6623494-,6623445-"; psi "0.190601";
chr11	juncbase	jcn_only_AA	6624634	6622005	.	-	.	gene_id "jcn_only_AA.884"; transcript_id "jcn_only_AA.884"; gene_name "CUFF.1975"; flanks "6624634^,6622005^"; structure "1-,2-"; splice_chain "6623494-,6622005-"; psi "0.805825";
chr15	juncbase	intron_retention	41222314	41222823	.	-	.	gene_id "intron_retention.1055"; transcript_id "intron_retention.1055"; gene_name "CUFF.1975"; flanks "41222314-,41222823^"; structure "0,1^2-"; splice_chain ",41222314^41222823-"; psi "0.622800";
chr13	juncbase	intron_retention	103518261	103518612	.	-	.	gene_id "intron_retention.1056"; transcript_id "intron_retention.1056"; gene_name "CUFF.1975"; flanks "103518261-,103518612^"; structure "0,1^2-"; splice_chain ",103518261^103518612-"; psi "0.902200";
chr6	juncbase	jcn_only_AA	43483333	43481371	.	-	.	gene_id "jcn_only_AA.885"; transcript_id "jcn_only_AA.885"; gene_name "CUFF.1975"; flanks "43483333^,43481371^"; structure "1-,2-"; splice_chain "43483044-,43481371-"; psi "0.967600";
chr17	juncbase	intron_retention	61904972	61906218	.	-	.	gene_id "intron_retention.1057"; transcript_id "intron_retention.1057"; gene_name "CUFF.1975"; flanks "61904972-,61906218^"; structure "0,1^2-"; splice_chain ",61904972^61906218-"; psi "0.900700";
chr1	juncbase	intron_retention	245133745	245165423	.	-	.	gene_id "intron_retention.1058"; transcript_id "intron_retention.1058"; gene_name "CUFF.1975"; flanks "245133745-,245165423^"; structure "0,1^2-"; splice_chain ",245133745^245165423-"; psi "0.727300";
chr6	juncbase	jcn_only_AD	111303332	111306209	.	-	.	gene_id "jcn_only_AD.1087"; transcript_id "jcn_only_AD.1087"; gene_name "CUFF.1975"; flanks "111303332-,111306209-"; structure "1^,2^"; splice_chain "111303332^,111303706^"; psi "0.865300";
chr15	juncbase	cassette	55488551	55485031	.	-	.	gene_id "cassette.777"; transcript_id "cassette.777"; gene_name "CUFF.1975"; flanks "55488551^,55485031-"; structure "0,1-2^"; splice_chain ",55486557-55486494^"; psi "0.420000";
chr17	juncbase	jcn_only_AA	1616997	1615693	.	-	.	gene_id "jcn_only_AA.886"; transcript_id "jcn_only_AA.886"; gene_name "CUFF.1975"; flanks "1616997^,1615693^"; structure "1-,2-"; splice_chain "1616189-,1615693-"; psi "0.261258";
chr12	juncbase	cassette	69207408	69214105	.	-	.	gene_id "cassette.778"; transcript_id "cassette.778"; gene_name "CUFF.1975"; flanks "69207408^,69214105-"; structure "0,1-2^"; splice_chain ",69210592-69210725^"; psi "0.502600";
chr12	juncbase	cassette	69203072	69214105	.	-	.	gene_id "cassette.779"; transcript_id "cassette.779"; gene_name "CUFF.1975"; flanks "69203072^,69214105-"; structure "0,1-2^"; splice_chain ",69210592-69210725^"; psi "0.502600";
chr17	juncbase	intron_retention	6353392	6353559	.	-	.	gene_id "intron_retention.1059"; transcript_id "intron_retention.1059"; gene_name "CUFF.1975"; flanks "6353392-,6353559^"; structure "0,1^2-"; splice_chain ",6353392^6353559-"; psi "0.766100";
chr3	juncbase	intron_retention	149051300	149051186	.	-	.	gene_id "intron_retention.1060"; transcript_id "intron_retention.1060"; gene_name "CUFF.1975"; flanks "149051300-,149051186^"; structure "0,1^2-"; splice_chain ",149051300^149051186-"; psi "0.089200";
chr19	juncbase	cassette	6110404	6016282	.	-	.	gene_id "cassette.780"; transcript_id "cassette.780"; gene_name "CUFF.1975"; flanks "6110404^,6016282-"; structure "0,1-2^"; splice_chain ",6026248-6026174^"; psi "0.566900";
chr19	juncbase	cassette	6039991	6016282	.	-	.	gene_id "cassette.781"; transcript_id "cassette.781"; gene_name "CUFF.1975"; flanks "6039991^,6016282-"; structure "0,1-2^"; splice_chain ",6026248-6026174^"; psi "0.566900";
chr9	juncbase	intron_retention	125027824	125033143	.	-	.	gene_id "intron_retention.1061"; transcript_id "intron_retention.1061"; gene_name "CUFF.1975"; flanks "125027824-,125033143^"; structure "0,1^2-"; splice_chain ",125027824^125033143-"; psi "0.531200";
chr4	juncbase	intron_retention	83821487	83821376	.	-	.	gene_id "intron_retention.1062"; transcript_id "intron_retention.1062"; gene_name "CUFF.1975"; flanks "83821487-,83821376^"; structure "0,1^2-"; splice_chain ",83821487^83821376-"; psi "0.078000";
chrX	juncbase	jcn_only_AD	134193764	134254455	.	-	.	gene_id "jcn_only_AD.1088"; transcript_id "jcn_only_AD.1088"; gene_name "CUFF.1975"; flanks "134193764-,134254455-"; structure "1^,2^"; splice_chain "134193764^,134250852^"; psi "0.434800";
chr12	juncbase	jcn_only_AA	53854927	53856277	.	-	.	gene_id "jcn_only_AA.887"; transcript_id "jcn_only_AA.887"; gene_name "CUFF.1975"; flanks "53854927^,53856277^"; structure "1-,2-"; splice_chain "53856265-,53856277-"; psi "0.383500";
chr2	juncbase	intron_retention	242437031	242436793	.	-	.	gene_id "intron_retention.1063"; transcript_id "intron_retention.1063"; gene_name "CUFF.1975"; flanks "242437031-,242436793^"; structure "0,1^2-"; splice_chain ",242437031^242436793-"; psi "0.405100";
chr2	juncbase	cassette	242590750	242592927	.	-	.	gene_id "cassette.782"; transcript_id "cassette.782"; gene_name "CUFF.1975"; flanks "242590750^,242592927-"; structure "0,1-2^"; splice_chain ",242591299-242591389^"; psi "0.477000";
chr2	juncbase	cassette	242590750	242592722	.	-	.	gene_id "cassette.783"; transcript_id "cassette.783"; gene_name "CUFF.1975"; flanks "242590750^,242592722-"; structure "0,1-2^"; splice_chain ",242591299-242591389^"; psi "0.477000";
chr11	juncbase	cassette	102936998	102933143	.	-	.	gene_id "cassette.784"; transcript_id "cassette.784"; gene_name "CUFF.1975"; flanks "102936998^,102933143-"; structure "0,1-2^"; splice_chain ",102935106-102935004^"; psi "0.532400";
chr4	juncbase	jcn_only_AD	3949817	3945099	.	-	.	gene_id "jcn_only_AD.1089"; transcript_id "jcn_only_AD.1089"; gene_name "CUFF.1975"; flanks "3949817-,3945099-"; structure "1^,2^"; splice_chain "3949817^,3948496^"; psi "0.395826";
chr4	juncbase	jcn_only_AD	3954838	3945099	.	-	.	gene_id "jcn_only_AD.1090"; transcript_id "jcn_only_AD.1090"; gene_name "CUFF.1975"; flanks "3954838-,3945099-"; structure "1^,2^"; splice_chain "3954838^,3948496^"; psi "0.688095";
chr4	juncbase	jcn_only_AD	3948871	3945099	.	-	.	gene_id "jcn_only_AD.1091"; transcript_id "jcn_only_AD.1091"; gene_name "CUFF.1975"; flanks "3948871-,3945099-"; structure "1^,2^"; splice_chain "3948871^,3948496^"; psi "0.482111";
chr17	juncbase	jcn_only_AA	25965380	25967669	.	-	.	gene_id "jcn_only_AA.888"; transcript_id "jcn_only_AA.888"; gene_name "CUFF.1975"; flanks "25965380^,25967669^"; structure "1-,2-"; splice_chain "25967598-,25967669-"; psi "0.359900";
chr4	juncbase	intron_retention	99405536	99403326	.	-	.	gene_id "intron_retention.1064"; transcript_id "intron_retention.1064"; gene_name "CUFF.1975"; flanks "99405536-,99403326^"; structure "0,1^2-"; splice_chain ",99405536^99403326-"; psi "0.584900";
chr22	juncbase	jcn_only_AA	21832079	21830449	.	-	.	gene_id "jcn_only_AA.889"; transcript_id "jcn_only_AA.889"; gene_name "CUFF.1975"; flanks "21832079^,21830449^"; structure "1-,2-"; splice_chain "21831053-,21830449-"; psi "0.282100";
chr8	juncbase	jcn_only_AD	69243542	69218833	.	-	.	gene_id "jcn_only_AD.1092"; transcript_id "jcn_only_AD.1092"; gene_name "CUFF.1975"; flanks "69243542-,69218833-"; structure "1^,2^"; splice_chain "69243542^,69224379^"; psi "0.650000";
chr2	juncbase	jcn_only_AD	101609989	101612258	.	-	.	gene_id "jcn_only_AD.1093"; transcript_id "jcn_only_AD.1093"; gene_name "CUFF.1975"; flanks "101609989-,101612258-"; structure "1^,2^"; splice_chain "101609989^,101611042^"; psi "0.867300";
chr17	juncbase	intron_retention	29701147	29705906	.	-	.	gene_id "intron_retention.1065"; transcript_id "intron_retention.1065"; gene_name "CUFF.1975"; flanks "29701147-,29705906^"; structure "0,1^2-"; splice_chain ",29701147^29705906-"; psi "0.768800";
chr2	juncbase	jcn_only_AD	25194425	25190162	.	-	.	gene_id "jcn_only_AD.1094"; transcript_id "jcn_only_AD.1094"; gene_name "CUFF.1975"; flanks "25194425-,25190162-"; structure "1^,2^"; splice_chain "25194425^,25194285^"; psi "0.350300";
chrX	juncbase	intron_retention	13835377	13835314	.	-	.	gene_id "intron_retention.1066"; transcript_id "intron_retention.1066"; gene_name "CUFF.1975"; flanks "13835377-,13835314^"; structure "0,1^2-"; splice_chain ",13835377^13835314-"; psi "0.722200";
chr1	juncbase	intron_retention	2087531	2100957	.	-	.	gene_id "intron_retention.1067"; transcript_id "intron_retention.1067"; gene_name "CUFF.1975"; flanks "2087531-,2100957^"; structure "0,1^2-"; splice_chain ",2087531^2100957-"; psi "0.045800";
chr3	juncbase	intron_retention	38051622	38051544	.	-	.	gene_id "intron_retention.1068"; transcript_id "intron_retention.1068"; gene_name "CUFF.1975"; flanks "38051622-,38051544^"; structure "0,1^2-"; splice_chain ",38051622^38051544-"; psi "0.336000";
chr2	juncbase	jcn_only_AA	109085540	109086107	.	-	.	gene_id "jcn_only_AA.890"; transcript_id "jcn_only_AA.890"; gene_name "CUFF.1975"; flanks "109085540^,109086107^"; structure "1-,2-"; splice_chain "109085756-,109086107-"; psi "0.417300";
chr8	juncbase	cassette	22012073	22011552	.	-	.	gene_id "cassette.785"; transcript_id "cassette.785"; gene_name "CUFF.1975"; flanks "22012073^,22011552-"; structure "0,1-2^"; splice_chain ",22011726-22011655^"; psi "0.981800";
chr22	juncbase	jcn_only_AA	51010435	51009962	.	-	.	gene_id "jcn_only_AA.891"; transcript_id "jcn_only_AA.891"; gene_name "CUFF.1975"; flanks "51010435^,51009962^"; structure "1-,2-"; splice_chain "51009968-,51009962-"; psi "0.108700";
chr8	juncbase	intron_retention	144356972	144358067	.	-	.	gene_id "intron_retention.1069"; transcript_id "intron_retention.1069"; gene_name "CUFF.1975"; flanks "144356972-,144358067^"; structure "0,1^2-"; splice_chain ",144356972^144358067-"; psi "0.459700";
chrX	juncbase	jcn_only_AA	119378619	119312411	.	-	.	gene_id "jcn_only_AA.892"; transcript_id "jcn_only_AA.892"; gene_name "CUFF.1975"; flanks "119378619^,119312411^"; structure "1-,2-"; splice_chain "119377886-,119312411-"; psi "0.781818";
chrX	juncbase	jcn_only_AA	119378619	119355497	.	-	.	gene_id "jcn_only_AA.893"; transcript_id "jcn_only_AA.893"; gene_name "CUFF.1975"; flanks "119378619^,119355497^"; structure "1-,2-"; splice_chain "119377886-,119355497-"; psi "0.538462";
chrX	juncbase	jcn_only_AA	119378619	119271099	.	-	.	gene_id "jcn_only_AA.894"; transcript_id "jcn_only_AA.894"; gene_name "CUFF.1975"; flanks "119378619^,119271099^"; structure "1-,2-"; splice_chain "119377886-,119271099-"; psi "0.600000";
chrX	juncbase	jcn_only_AA	119378619	119374208	.	-	.	gene_id "jcn_only_AA.895"; transcript_id "jcn_only_AA.895"; gene_name "CUFF.1975"; flanks "119378619^,119374208^"; structure "1-,2-"; splice_chain "119377886-,119374208-"; psi "0.500000";
chr9	juncbase	jcn_only_AD	135703400	135702441	.	-	.	gene_id "jcn_only_AD.1095"; transcript_id "jcn_only_AD.1095"; gene_name "CUFF.1975"; flanks "135703400-,135702441-"; structure "1^,2^"; splice_chain "135703400^,135702694^"; psi "0.743600";
chr6	juncbase	jcn_only_AD	32125497	32130345	.	-	.	gene_id "jcn_only_AD.1096"; transcript_id "jcn_only_AD.1096"; gene_name "CUFF.1975"; flanks "32125497-,32130345-"; structure "1^,2^"; splice_chain "32125497^,32125701^"; psi "0.013600";
chr9	juncbase	jcn_only_AA	43907537	43908436	.	-	.	gene_id "jcn_only_AA.896"; transcript_id "jcn_only_AA.896"; gene_name "CUFF.1975"; flanks "43907537^,43908436^"; structure "1-,2-"; splice_chain "43908112-,43908436-"; psi "0.225800";
chrX	juncbase	jcn_only_AD	53570847	53569500	.	-	.	gene_id "jcn_only_AD.1097"; transcript_id "jcn_only_AD.1097"; gene_name "CUFF.1975"; flanks "53570847-,53569500-"; structure "1^,2^"; splice_chain "53570847^,53570802^"; psi "0.675300";
chr15	juncbase	intron_retention	77771663	77775312	.	-	.	gene_id "intron_retention.1070"; transcript_id "intron_retention.1070"; gene_name "CUFF.1975"; flanks "77771663-,77775312^"; structure "0,1^2-"; splice_chain ",77771663^77775312-"; psi "0.658200";
chr16	juncbase	intron_retention	4466786	4466601	.	-	.	gene_id "intron_retention.1071"; transcript_id "intron_retention.1071"; gene_name "CUFF.1975"; flanks "4466786-,4466601^"; structure "0,1^2-"; splice_chain ",4466786^4466601-"; psi "0.810300";
chr3	juncbase	jcn_only_AD	119187853	119188667	.	-	.	gene_id "jcn_only_AD.1098"; transcript_id "jcn_only_AD.1098"; gene_name "CUFF.1975"; flanks "119187853-,119188667-"; structure "1^,2^"; splice_chain "119187853^,119187953^"; psi "0.559770";
chr8	juncbase	cassette	80962680	80954903	.	-	.	gene_id "cassette.786"; transcript_id "cassette.786"; gene_name "CUFF.1975"; flanks "80962680^,80954903-"; structure "0,1-2^"; splice_chain ",80956443-80956402^"; psi "0.359500";
chr8	juncbase	cassette	80963762	80954903	.	-	.	gene_id "cassette.787"; transcript_id "cassette.787"; gene_name "CUFF.1975"; flanks "80963762^,80954903-"; structure "0,1-2^"; splice_chain ",80956443-80956402^"; psi "0.359500";
chr1	juncbase	cassette	169697199	169696666	.	-	.	gene_id "cassette.788"; transcript_id "cassette.788"; gene_name "CUFF.1975"; flanks "169697199^,169696666-"; structure "0,1-2^"; splice_chain ",169697068-169696880^"; psi "0.494800";
chr1	juncbase	cassette	169698327	169696666	.	-	.	gene_id "cassette.789"; transcript_id "cassette.789"; gene_name "CUFF.1975"; flanks "169698327^,169696666-"; structure "0,1-2^"; splice_chain ",169697068-169696880^"; psi "0.494800";
chr7	juncbase	intron_retention	73108380	73111796	.	-	.	gene_id "intron_retention.1072"; transcript_id "intron_retention.1072"; gene_name "CUFF.1975"; flanks "73108380-,73111796^"; structure "0,1^2-"; splice_chain ",73108380^73111796-"; psi "0.558100";
chr4	juncbase	cassette	77996625	77979788	.	-	.	gene_id "cassette.790"; transcript_id "cassette.790"; gene_name "CUFF.1975"; flanks "77996625^,77979788-"; structure "0,1-2^"; splice_chain ",77987558-77987402^"; psi "0.826300";
chr17	juncbase	jcn_only_AD	61904874	61905498	.	-	.	gene_id "jcn_only_AD.1099"; transcript_id "jcn_only_AD.1099"; gene_name "CUFF.1975"; flanks "61904874-,61905498-"; structure "1^,2^"; splice_chain "61904874^,61905283^"; psi "0.630700";
chr1	juncbase	intron_retention	230391090	230398319	.	-	.	gene_id "intron_retention.1073"; transcript_id "intron_retention.1073"; gene_name "CUFF.1975"; flanks "230391090-,230398319^"; structure "0,1^2-"; splice_chain ",230391090^230398319-"; psi "0.308900";
chr9	juncbase	intron_retention	43876145	43884945	.	-	.	gene_id "intron_retention.1074"; transcript_id "intron_retention.1074"; gene_name "CUFF.1975"; flanks "43876145-,43884945^"; structure "0,1^2-"; splice_chain ",43876145^43884945-"; psi "0.767900";
chr7	juncbase	jcn_only_AA	136554165	136699567	.	-	.	gene_id "jcn_only_AA.897"; transcript_id "jcn_only_AA.897"; gene_name "CUFF.1975"; flanks "136554165^,136699567^"; structure "1-,2-"; splice_chain "136554552-,136699567-"; psi "0.535197";
chr7	juncbase	jcn_only_AA	136554165	136635750	.	-	.	gene_id "jcn_only_AA.898"; transcript_id "jcn_only_AA.898"; gene_name "CUFF.1975"; flanks "136554165^,136635750^"; structure "1-,2-"; splice_chain "136554552-,136635750-"; psi "0.063774";
chr7	juncbase	jcn_only_AA	136554165	136676934	.	-	.	gene_id "jcn_only_AA.899"; transcript_id "jcn_only_AA.899"; gene_name "CUFF.1975"; flanks "136554165^,136676934^"; structure "1-,2-"; splice_chain "136554552-,136676934-"; psi "0.108142";
chr14	juncbase	intron_retention	24683698	24683601	.	-	.	gene_id "intron_retention.1075"; transcript_id "intron_retention.1075"; gene_name "CUFF.1975"; flanks "24683698-,24683601^"; structure "0,1^2-"; splice_chain ",24683698^24683601-"; psi "0.500000";
chr15	juncbase	jcn_only_AD	29288009	29346048	.	-	.	gene_id "jcn_only_AD.1100"; transcript_id "jcn_only_AD.1100"; gene_name "CUFF.1975"; flanks "29288009-,29346048-"; structure "1^,2^"; splice_chain "29288009^,29336631^"; psi "0.883500";
chr17	juncbase	jcn_only_AD	79895404	79894737	.	-	.	gene_id "jcn_only_AD.1101"; transcript_id "jcn_only_AD.1101"; gene_name "CUFF.1975"; flanks "79895404-,79894737-"; structure "1^,2^"; splice_chain "79895404^,79895138^"; psi "0.111825";
chr16	juncbase	jcn_only_AA	67968700	67968574	.	-	.	gene_id "jcn_only_AA.900"; transcript_id "jcn_only_AA.900"; gene_name "CUFF.1975"; flanks "67968700^,67968574^"; structure "1-,2-"; splice_chain "67968597-,67968574-"; psi "0.586300";
chr6	juncbase	jcn_only_AA	116989729	116988075	.	-	.	gene_id "jcn_only_AA.901"; transcript_id "jcn_only_AA.901"; gene_name "CUFF.1975"; flanks "116989729^,116988075^"; structure "1-,2-"; splice_chain "116988370-,116988075-"; psi "0.375000";
chr2	juncbase	jcn_only_AD	3461464	3464034	.	-	.	gene_id "jcn_only_AD.1102"; transcript_id "jcn_only_AD.1102"; gene_name "CUFF.1975"; flanks "3461464-,3464034-"; structure "1^,2^"; splice_chain "3461464^,3462232^"; psi "0.969500";
chr1	juncbase	cassette	145575404	145578062	.	-	.	gene_id "cassette.791"; transcript_id "cassette.791"; gene_name "CUFF.1975"; flanks "145575404^,145578062-"; structure "0,1-2^"; splice_chain ",145577652-145577753^"; psi "0.904600";
chr1	juncbase	cassette	85725041	85724405	.	-	.	gene_id "cassette.792"; transcript_id "cassette.792"; gene_name "CUFF.1975"; flanks "85725041^,85724405-"; structure "0,1-2^"; splice_chain ",85724744-85724618^"; psi "0.456600";
chr16	juncbase	jcn_only_AD	6028178	6400446	.	-	.	gene_id "jcn_only_AD.1103"; transcript_id "jcn_only_AD.1103"; gene_name "CUFF.1975"; flanks "6028178-,6400446-"; structure "1^,2^"; splice_chain "6028178^,6093173^"; psi "0.004530";
chr16	juncbase	jcn_only_AD	6028173	6400446	.	-	.	gene_id "jcn_only_AD.1104"; transcript_id "jcn_only_AD.1104"; gene_name "CUFF.1975"; flanks "6028173-,6400446-"; structure "1^,2^"; splice_chain "6028173^,6093173^"; psi "0.006882";
chr2	juncbase	intron_retention	109089355	109091991	.	-	.	gene_id "intron_retention.1076"; transcript_id "intron_retention.1076"; gene_name "CUFF.1975"; flanks "109089355-,109091991^"; structure "0,1^2-"; splice_chain ",109089355^109091991-"; psi "0.763600";
chr16	juncbase	intron_retention	602530	602605	.	-	.	gene_id "intron_retention.1077"; transcript_id "intron_retention.1077"; gene_name "CUFF.1975"; flanks "602530-,602605^"; structure "0,1^2-"; splice_chain ",602530^602605-"; psi "0.813100";
chr17	juncbase	cassette	29576137	29584705	.	-	.	gene_id "cassette.793"; transcript_id "cassette.793"; gene_name "CUFF.1975"; flanks "29576137^,29584705-"; structure "0,1-2^"; splice_chain ",29579956-29580018^"; psi "0.911000";
chr22	juncbase	intron_retention	51016513	51016363	.	-	.	gene_id "intron_retention.1078"; transcript_id "intron_retention.1078"; gene_name "CUFF.1975"; flanks "51016513-,51016363^"; structure "0,1^2-"; splice_chain ",51016513^51016363-"; psi "0.631600";
chr11	juncbase	cassette	5688919	5686912	.	-	.	gene_id "cassette.794"; transcript_id "cassette.794"; gene_name "CUFF.1975"; flanks "5688919^,5686912-"; structure "0,1-2^"; splice_chain ",5687311-5687211^"; psi "0.891900";
chr17	juncbase	jcn_only_AD	1939947	1940129	.	-	.	gene_id "jcn_only_AD.1105"; transcript_id "jcn_only_AD.1105"; gene_name "CUFF.1975"; flanks "1939947-,1940129-"; structure "1^,2^"; splice_chain "1939947^,1939980^"; psi "0.035400";
chr2	juncbase	intron_retention	242447920	242447550	.	-	.	gene_id "intron_retention.1079"; transcript_id "intron_retention.1079"; gene_name "CUFF.1975"; flanks "242447920-,242447550^"; structure "0,1^2-"; splice_chain ",242447920^242447550-"; psi "0.392800";
chr17	juncbase	cassette	1619424	1617308	.	-	.	gene_id "cassette.795"; transcript_id "cassette.795"; gene_name "CUFF.1975"; flanks "1619424^,1617308-"; structure "0,1-2^"; splice_chain ",1617747-1617665^"; psi "0.427100";
chr10	juncbase	cassette	27112067	27059274	.	-	.	gene_id "cassette.796"; transcript_id "cassette.796"; gene_name "CUFF.1975"; flanks "27112067^,27059274-"; structure "0,1-2^"; splice_chain ",27066170-27065994^"; psi "0.888000";
chr15	juncbase	jcn_only_AD	63047892	63053880	.	-	.	gene_id "jcn_only_AD.1106"; transcript_id "jcn_only_AD.1106"; gene_name "CUFF.1975"; flanks "63047892-,63053880-"; structure "1^,2^"; splice_chain "63047892^,63050858^"; psi "0.421100";
chr3	juncbase	jcn_only_AA	107596749	107586424	.	-	.	gene_id "jcn_only_AA.902"; transcript_id "jcn_only_AA.902"; gene_name "CUFF.1975"; flanks "107596749^,107586424^"; structure "1-,2-"; splice_chain "107591873-,107586424-"; psi "0.693353";
chr3	juncbase	cassette	119196295	119198755	.	-	.	gene_id "cassette.797"; transcript_id "cassette.797"; gene_name "CUFF.1975"; flanks "119196295^,119198755-"; structure "0,1-2^"; splice_chain ",119197181-119197321^"; psi "0.890000";
chr12	juncbase	jcn_only_AD	113623083	113618863	.	-	.	gene_id "jcn_only_AD.1107"; transcript_id "jcn_only_AD.1107"; gene_name "CUFF.1975"; flanks "113623083-,113618863-"; structure "1^,2^"; splice_chain "113623083^,113621528^"; psi "0.493300";
chr6	juncbase	jcn_only_AD	31935859	31936105	.	-	.	gene_id "jcn_only_AD.1108"; transcript_id "jcn_only_AD.1108"; gene_name "CUFF.1975"; flanks "31935859-,31936105-"; structure "1^,2^"; splice_chain "31935859^,31935896^"; psi "0.352900";
chr9	juncbase	cassette	125047566	125048318	.	-	.	gene_id "cassette.798"; transcript_id "cassette.798"; gene_name "CUFF.1975"; flanks "125047566^,125048318-"; structure "0,1-2^"; splice_chain ",125048059-125048225^"; psi "0.665000";
chr17	juncbase	jcn_only_AD	29592357	29652838	.	-	.	gene_id "jcn_only_AD.1109"; transcript_id "jcn_only_AD.1109"; gene_name "CUFF.1975"; flanks "29592357-,29652838-"; structure "1^,2^"; splice_chain "29592357^,29626624^"; psi "0.536585";
chr5	juncbase	intron_retention	140041798	140041887	.	-	.	gene_id "intron_retention.1080"; transcript_id "intron_retention.1080"; gene_name "CUFF.1975"; flanks "140041798-,140041887^"; structure "0,1^2-"; splice_chain ",140041798^140041887-"; psi "0.016400";
chr2	juncbase	jcn_only_AA	171376050	171399416	.	-	.	gene_id "jcn_only_AA.903"; transcript_id "jcn_only_AA.903"; gene_name "CUFF.1975"; flanks "171376050^,171399416^"; structure "1-,2-"; splice_chain "171381015-,171399416-"; psi "0.841300";
chr16	juncbase	intron_retention	2203223	2203320	.	-	.	gene_id "intron_retention.1081"; transcript_id "intron_retention.1081"; gene_name "CUFF.1975"; flanks "2203223-,2203320^"; structure "0,1^2-"; splice_chain ",2203223^2203320-"; psi "0.200800";
chr17	juncbase	intron_retention	61904874	61905211	.	-	.	gene_id "intron_retention.1082"; transcript_id "intron_retention.1082"; gene_name "CUFF.1975"; flanks "61904874-,61905211^"; structure "0,1^2-"; splice_chain ",61904874^61905211-"; psi "0.469400";
chr7	juncbase	intron_retention	54617863	54636824	.	-	.	gene_id "intron_retention.1083"; transcript_id "intron_retention.1083"; gene_name "CUFF.1975"; flanks "54617863-,54636824^"; structure "0,1^2-"; splice_chain ",54617863^54636824-"; psi "0.377900";
chr6	juncbase	cassette	126329618	126332399	.	-	.	gene_id "cassette.799"; transcript_id "cassette.799"; gene_name "CUFF.1975"; flanks "126329618^,126332399-"; structure "0,1-2^"; splice_chain ",126329803-126329891^"; psi "0.370400";
chr6	juncbase	jcn_only_AA	3155859	3155157	.	-	.	gene_id "jcn_only_AA.904"; transcript_id "jcn_only_AA.904"; gene_name "CUFF.1975"; flanks "3155859^,3155157^"; structure "1-,2-"; splice_chain "3155289-,3155157-"; psi "0.338700";
chr3	juncbase	cassette	127294783	127294108	.	-	.	gene_id "cassette.800"; transcript_id "cassette.800"; gene_name "CUFF.1975"; flanks "127294783^,127294108-"; structure "0,1-2^"; splice_chain ",127294348-127294246^"; psi "0.605500";
chr3	juncbase	cassette	127294592	127294108	.	-	.	gene_id "cassette.801"; transcript_id "cassette.801"; gene_name "CUFF.1975"; flanks "127294592^,127294108-"; structure "0,1-2^"; splice_chain ",127294348-127294246^"; psi "0.605500";
chr21	juncbase	cassette	30971150	30963545	.	-	.	gene_id "cassette.802"; transcript_id "cassette.802"; gene_name "CUFF.1975"; flanks "30971150^,30963545-"; structure "0,1-2^"; splice_chain ",30968890-30968846^"; psi "0.629800";
chr3	juncbase	cassette	125820272	125769893	.	-	.	gene_id "cassette.803"; transcript_id "cassette.803"; gene_name "CUFF.1975"; flanks "125820272^,125769893-"; structure "0,1-2^"; splice_chain ",125787089-125786790^"; psi "0.933700";
chr2	juncbase	jcn_only_AD	33487888	33488361	.	-	.	gene_id "jcn_only_AD.1110"; transcript_id "jcn_only_AD.1110"; gene_name "CUFF.1975"; flanks "33487888-,33488361-"; structure "1^,2^"; splice_chain "33487888^,33487891^"; psi "0.719800";
chr17	juncbase	cassette	60783830	60813447	.	-	.	gene_id "cassette.804"; transcript_id "cassette.804"; gene_name "CUFF.1975"; flanks "60783830^,60813447-"; structure "0,1-2^"; splice_chain ",60784793-60784968^"; psi "0.827700";
chr7	juncbase	jcn_only_AA	107591671	107580803	.	-	.	gene_id "jcn_only_AA.905"; transcript_id "jcn_only_AA.905"; gene_name "CUFF.1975"; flanks "107591671^,107580803^"; structure "1-,2-"; splice_chain "107583064-,107580803-"; psi "0.112300";
chr4	juncbase	cassette	6382724	6377658	.	-	.	gene_id "cassette.805"; transcript_id "cassette.805"; gene_name "CUFF.1975"; flanks "6382724^,6377658-"; structure "0,1-2^"; splice_chain ",6380299-6380134^"; psi "0.952400";
chr10	juncbase	cassette	123681864	123670666	.	-	.	gene_id "cassette.806"; transcript_id "cassette.806"; gene_name "CUFF.1975"; flanks "123681864^,123670666-"; structure "0,1-2^"; splice_chain ",123673408-123673305^"; psi "0.808800";
chr14	juncbase	jcn_only_AA	104213270	104212890	.	-	.	gene_id "jcn_only_AA.906"; transcript_id "jcn_only_AA.906"; gene_name "CUFF.1975"; flanks "104213270^,104212890^"; structure "1-,2-"; splice_chain "104213197-,104212890-"; psi "0.538422";
chr14	juncbase	jcn_only_AA	104213270	104213109	.	-	.	gene_id "jcn_only_AA.907"; transcript_id "jcn_only_AA.907"; gene_name "CUFF.1975"; flanks "104213270^,104213109^"; structure "1-,2-"; splice_chain "104213197-,104213109-"; psi "0.603848";
chr12	juncbase	cassette	120210574	120204986	.	-	.	gene_id "cassette.807"; transcript_id "cassette.807"; gene_name "CUFF.1975"; flanks "120210574^,120204986-"; structure "0,1-2^"; splice_chain ",120208714-120208589^"; psi "0.833300";
chr16	juncbase	intron_retention	14026261	14028049	.	-	.	gene_id "intron_retention.1084"; transcript_id "intron_retention.1084"; gene_name "CUFF.1975"; flanks "14026261-,14028049^"; structure "0,1^2-"; splice_chain ",14026261^14028049-"; psi "0.819400";
chr7	juncbase	jcn_only_AD	156516806	156476857	.	-	.	gene_id "jcn_only_AD.1111"; transcript_id "jcn_only_AD.1111"; gene_name "CUFF.1975"; flanks "156516806-,156476857-"; structure "1^,2^"; splice_chain "156516806^,156480724^"; psi "0.851900";
chr17	juncbase	jcn_only_AA	61904874	61905479	.	-	.	gene_id "jcn_only_AA.908"; transcript_id "jcn_only_AA.908"; gene_name "CUFF.1975"; flanks "61904874^,61905479^"; structure "1-,2-"; splice_chain "61905211-,61905479-"; psi "0.238679";
chr17	juncbase	jcn_only_AA	61904874	61905498	.	-	.	gene_id "jcn_only_AA.909"; transcript_id "jcn_only_AA.909"; gene_name "CUFF.1975"; flanks "61904874^,61905498^"; structure "1-,2-"; splice_chain "61905211-,61905498-"; psi "0.719975";
chr19	juncbase	jcn_only_AD	6148242	6047515	.	-	.	gene_id "jcn_only_AD.1112"; transcript_id "jcn_only_AD.1112"; gene_name "CUFF.1975"; flanks "6148242-,6047515-"; structure "1^,2^"; splice_chain "6148242^,6057173^"; psi "0.565413";
chr19	juncbase	jcn_only_AD	6110404	6047515	.	-	.	gene_id "jcn_only_AD.1113"; transcript_id "jcn_only_AD.1113"; gene_name "CUFF.1975"; flanks "6110404-,6047515-"; structure "1^,2^"; splice_chain "6110404^,6057173^"; psi "0.891047";
chr19	juncbase	jcn_only_AD	6072016	6047515	.	-	.	gene_id "jcn_only_AD.1114"; transcript_id "jcn_only_AD.1114"; gene_name "CUFF.1975"; flanks "6072016-,6047515-"; structure "1^,2^"; splice_chain "6072016^,6057173^"; psi "0.680693";
chr2	juncbase	cassette	177053147	177042222	.	-	.	gene_id "cassette.808"; transcript_id "cassette.808"; gene_name "CUFF.1975"; flanks "177053147^,177042222-"; structure "0,1-2^"; splice_chain ",177043826-177043757^"; psi "0.274700";
chr10	juncbase	jcn_only_AD	96961942	96966965	.	-	.	gene_id "jcn_only_AD.1115"; transcript_id "jcn_only_AD.1115"; gene_name "CUFF.1975"; flanks "96961942-,96966965-"; structure "1^,2^"; splice_chain "96961942^,96961952^"; psi "0.023800";
chr11	juncbase	jcn_only_AA	5706098	5701468	.	-	.	gene_id "jcn_only_AA.910"; transcript_id "jcn_only_AA.910"; gene_name "CUFF.1975"; flanks "5706098^,5701468^"; structure "1-,2-"; splice_chain "5705369-,5701468-"; psi "0.775500";
chr3	juncbase	jcn_only_AA	120389274	120371493	.	-	.	gene_id "jcn_only_AA.911"; transcript_id "jcn_only_AA.911"; gene_name "CUFF.1975"; flanks "120389274^,120371493^"; structure "1-,2-"; splice_chain "120371498-,120371493-"; psi "0.134500";
chr2	juncbase	intron_retention	38201357	38202355	.	-	.	gene_id "intron_retention.1085"; transcript_id "intron_retention.1085"; gene_name "CUFF.1975"; flanks "38201357-,38202355^"; structure "0,1^2-"; splice_chain ",38201357^38202355-"; psi "0.045800";
chr1	juncbase	jcn_only_AD	160146352	160147309	.	-	.	gene_id "jcn_only_AD.1116"; transcript_id "jcn_only_AD.1116"; gene_name "CUFF.1975"; flanks "160146352-,160147309-"; structure "1^,2^"; splice_chain "160146352^,160146392^"; psi "0.217400";
chr2	juncbase	cassette	264782	263372	.	-	.	gene_id "cassette.809"; transcript_id "cassette.809"; gene_name "CUFF.1975"; flanks "264782^,263372-"; structure "0,1-2^"; splice_chain ",263762-263564^"; psi "0.893500";
chr19	juncbase	jcn_only_AD	17445920	17448817	.	-	.	gene_id "jcn_only_AD.1117"; transcript_id "jcn_only_AD.1117"; gene_name "CUFF.1975"; flanks "17445920-,17448817-"; structure "1^,2^"; splice_chain "17445920^,17447843^"; psi "0.078039";
chr12	juncbase	jcn_only_AA	120158283	120156621	.	-	.	gene_id "jcn_only_AA.912"; transcript_id "jcn_only_AA.912"; gene_name "CUFF.1975"; flanks "120158283^,120156621^"; structure "1-,2-"; splice_chain "120156666-,120156621-"; psi "0.969200";
chr11	juncbase	cassette	6640427	6639007	.	-	.	gene_id "cassette.810"; transcript_id "cassette.810"; gene_name "CUFF.1975"; flanks "6640427^,6639007-"; structure "0,1-2^"; splice_chain ",6640146-6640007^"; psi "0.762800";
chr7	juncbase	intron_retention	107575860	107572822	.	-	.	gene_id "intron_retention.1086"; transcript_id "intron_retention.1086"; gene_name "CUFF.1975"; flanks "107575860-,107572822^"; structure "0,1^2-"; splice_chain ",107575860^107572822-"; psi "0.817600";
chr18	juncbase	intron_retention	56002769	56008270	.	-	.	gene_id "intron_retention.1087"; transcript_id "intron_retention.1087"; gene_name "CUFF.1975"; flanks "56002769-,56008270^"; structure "0,1^2-"; splice_chain ",56002769^56008270-"; psi "0.740700";
chr13	juncbase	jcn_only_AD	33629452	33634816	.	-	.	gene_id "jcn_only_AD.1118"; transcript_id "jcn_only_AD.1118"; gene_name "CUFF.1975"; flanks "33629452-,33634816-"; structure "1^,2^"; splice_chain "33629452^,33629502^"; psi "0.053300";
chr15	juncbase	cassette	66789980	66786890	.	-	.	gene_id "cassette.811"; transcript_id "cassette.811"; gene_name "CUFF.1975"; flanks "66789980^,66786890-"; structure "0,1-2^"; splice_chain ",66787757-66787668^"; psi "0.819400";
chr15	juncbase	cassette	66789828	66786890	.	-	.	gene_id "cassette.812"; transcript_id "cassette.812"; gene_name "CUFF.1975"; flanks "66789828^,66786890-"; structure "0,1-2^"; splice_chain ",66787757-66787668^"; psi "0.819400";
chr17	juncbase	intron_retention	15517147	15517056	.	-	.	gene_id "intron_retention.1088"; transcript_id "intron_retention.1088"; gene_name "CUFF.1975"; flanks "15517147-,15517056^"; structure "0,1^2-"; splice_chain ",15517147^15517056-"; psi "0.961500";
chr7	juncbase	jcn_only_AA	148987129	148989302	.	-	.	gene_id "jcn_only_AA.913"; transcript_id "jcn_only_AA.913"; gene_name "CUFF.1975"; flanks "148987129^,148989302^"; structure "1-,2-"; splice_chain "148988647-,148989302-"; psi "0.714300";
chr5	juncbase	intron_retention	64887699	64887329	.	-	.	gene_id "intron_retention.1089"; transcript_id "intron_retention.1089"; gene_name "CUFF.1975"; flanks "64887699-,64887329^"; structure "0,1^2-"; splice_chain ",64887699^64887329-"; psi "0.526300";
chr19	juncbase	intron_retention	14877047	14876616	.	-	.	gene_id "intron_retention.1090"; transcript_id "intron_retention.1090"; gene_name "CUFF.1975"; flanks "14877047-,14876616^"; structure "0,1^2-"; splice_chain ",14877047^14876616-"; psi "0.164900";
chr9	juncbase	cassette	125027217	125033143	.	-	.	gene_id "cassette.813"; transcript_id "cassette.813"; gene_name "CUFF.1975"; flanks "125027217^,125033143-"; structure "0,1-2^"; splice_chain ",125027741-125027824^"; psi "0.124100";
chr16	juncbase	cassette	3115495	3117378	.	-	.	gene_id "cassette.814"; transcript_id "cassette.814"; gene_name "CUFF.1975"; flanks "3115495^,3117378-"; structure "0,1-2^"; splice_chain ",3115785-3115827^"; psi "0.876100";
chr15	juncbase	jcn_only_AD	40558696	40564425	.	-	.	gene_id "jcn_only_AD.1119"; transcript_id "jcn_only_AD.1119"; gene_name "CUFF.1975"; flanks "40558696-,40564425-"; structure "1^,2^"; splice_chain "40558696^,40559198^"; psi "0.789900";
chr7	juncbase	intron_retention	75044076	75044163	.	-	.	gene_id "intron_retention.1091"; transcript_id "intron_retention.1091"; gene_name "CUFF.1975"; flanks "75044076-,75044163^"; structure "0,1^2-"; splice_chain ",75044076^75044163-"; psi "0.067400";
chr22	juncbase	jcn_only_AA	37695347	37696948	.	-	.	gene_id "jcn_only_AA.914"; transcript_id "jcn_only_AA.914"; gene_name "CUFF.1975"; flanks "37695347^,37696948^"; structure "1-,2-"; splice_chain "37696194-,37696948-"; psi "0.684476";
chr3	juncbase	jcn_only_AD	27332753	27329234	.	-	.	gene_id "jcn_only_AD.1120"; transcript_id "jcn_only_AD.1120"; gene_name "CUFF.1975"; flanks "27332753-,27329234-"; structure "1^,2^"; splice_chain "27332753^,27332108^"; psi "0.321200";
chr21	juncbase	jcn_only_AA	15660867	15663891	.	-	.	gene_id "jcn_only_AA.915"; transcript_id "jcn_only_AA.915"; gene_name "CUFF.1975"; flanks "15660867^,15663891^"; structure "1-,2-"; splice_chain "15663607-,15663891-"; psi "0.348400";
chr17	juncbase	cassette	29677336	29683478	.	-	.	gene_id "cassette.815"; transcript_id "cassette.815"; gene_name "CUFF.1975"; flanks "29677336^,29683478-"; structure "0,1-2^"; splice_chain ",29679275-29679432^"; psi "0.785400";
chr1	juncbase	intron_retention	113471714	113464755	.	-	.	gene_id "intron_retention.1092"; transcript_id "intron_retention.1092"; gene_name "CUFF.1975"; flanks "113471714-,113464755^"; structure "0,1^2-"; splice_chain ",113471714^113464755-"; psi "0.041200";
chr6	juncbase	cassette	292560	311880	.	-	.	gene_id "cassette.816"; transcript_id "cassette.816"; gene_name "CUFF.1975"; flanks "292560^,311880-"; structure "0,1-2^"; splice_chain ",304628-304661^"; psi "0.941900";
chr8	juncbase	cassette	120809902	120807871	.	-	.	gene_id "cassette.817"; transcript_id "cassette.817"; gene_name "CUFF.1975"; flanks "120809902^,120807871-"; structure "0,1-2^"; splice_chain ",120809343-120809230^"; psi "0.008400";
chr6	juncbase	jcn_only_AD	2988265	2989762	.	-	.	gene_id "jcn_only_AD.1121"; transcript_id "jcn_only_AD.1121"; gene_name "CUFF.1975"; flanks "2988265-,2989762-"; structure "1^,2^"; splice_chain "2988265^,2988943^"; psi "0.587700";
chr12	juncbase	jcn_only_AA	56579939	56578876	.	-	.	gene_id "jcn_only_AA.916"; transcript_id "jcn_only_AA.916"; gene_name "CUFF.1975"; flanks "56579939^,56578876^"; structure "1-,2-"; splice_chain "56578895-,56578876-"; psi "0.478900";
chr19	juncbase	jcn_only_AD	6148242	6047515	.	-	.	gene_id "jcn_only_AD.1122"; transcript_id "jcn_only_AD.1122"; gene_name "CUFF.1975"; flanks "6148242-,6047515-"; structure "1^,2^"; splice_chain "6148242^,6049147^"; psi "0.832920";
chr19	juncbase	jcn_only_AD	6110404	6047515	.	-	.	gene_id "jcn_only_AD.1123"; transcript_id "jcn_only_AD.1123"; gene_name "CUFF.1975"; flanks "6110404-,6047515-"; structure "1^,2^"; splice_chain "6110404^,6049147^"; psi "0.969075";
chr19	juncbase	jcn_only_AD	6057173	6047515	.	-	.	gene_id "jcn_only_AD.1124"; transcript_id "jcn_only_AD.1124"; gene_name "CUFF.1975"; flanks "6057173-,6047515-"; structure "1^,2^"; splice_chain "6057173^,6049147^"; psi "0.793033";
chr19	juncbase	jcn_only_AD	6072016	6047515	.	-	.	gene_id "jcn_only_AD.1125"; transcript_id "jcn_only_AD.1125"; gene_name "CUFF.1975"; flanks "6072016-,6047515-"; structure "1^,2^"; splice_chain "6072016^,6049147^"; psi "0.890929";
chr11	juncbase	cassette	2192915	2191101	.	-	.	gene_id "cassette.818"; transcript_id "cassette.818"; gene_name "CUFF.1975"; flanks "2192915^,2191101-"; structure "0,1-2^"; splice_chain ",2192000-2191920^"; psi "0.308300";
chr11	juncbase	cassette	2192927	2191101	.	-	.	gene_id "cassette.819"; transcript_id "cassette.819"; gene_name "CUFF.1975"; flanks "2192927^,2191101-"; structure "0,1-2^"; splice_chain ",2192000-2191920^"; psi "0.308300";
chr7	juncbase	jcn_only_AD	37262220	37256300	.	-	.	gene_id "jcn_only_AD.1126"; transcript_id "jcn_only_AD.1126"; gene_name "CUFF.1975"; flanks "37262220-,37256300-"; structure "1^,2^"; splice_chain "37262220^,37257317^"; psi "0.780600";
chr15	juncbase	cassette	40545490	40556982	.	-	.	gene_id "cassette.820"; transcript_id "cassette.820"; gene_name "CUFF.1975"; flanks "40545490^,40556982-"; structure "0,1-2^"; splice_chain ",40556000-40556120^"; psi "0.054700";
chr2	juncbase	intron_retention	677289	675630	.	-	.	gene_id "intron_retention.1093"; transcript_id "intron_retention.1093"; gene_name "CUFF.1975"; flanks "677289-,675630^"; structure "0,1^2-"; splice_chain ",677289^675630-"; psi "0.789500";
chr17	juncbase	cassette	15562116	15546130	.	-	.	gene_id "cassette.821"; transcript_id "cassette.821"; gene_name "CUFF.1975"; flanks "15562116^,15546130-"; structure "0,1-2^"; splice_chain ",15555260-15554405^"; psi "0.549100";
chr17	juncbase	cassette	15580490	15546130	.	-	.	gene_id "cassette.822"; transcript_id "cassette.822"; gene_name "CUFF.1975"; flanks "15580490^,15546130-"; structure "0,1-2^"; splice_chain ",15555260-15554405^"; psi "0.549100";
chr19	juncbase	intron_retention	51527301	51526484	.	-	.	gene_id "intron_retention.1094"; transcript_id "intron_retention.1094"; gene_name "CUFF.1975"; flanks "51527301-,51526484^"; structure "0,1^2-"; splice_chain ",51527301^51526484-"; psi "0.076300";
chr17	juncbase	intron_retention	76993074	76991303	.	-	.	gene_id "intron_retention.1095"; transcript_id "intron_retention.1095"; gene_name "CUFF.1975"; flanks "76993074-,76991303^"; structure "0,1^2-"; splice_chain ",76993074^76991303-"; psi "0.048200";
chr12	juncbase	jcn_only_AA	22676360	22671071	.	-	.	gene_id "jcn_only_AA.917"; transcript_id "jcn_only_AA.917"; gene_name "CUFF.1975"; flanks "22676360^,22671071^"; structure "1-,2-"; splice_chain "22672173-,22671071-"; psi "0.293003";
chr12	juncbase	jcn_only_AA	22676360	22666324	.	-	.	gene_id "jcn_only_AA.918"; transcript_id "jcn_only_AA.918"; gene_name "CUFF.1975"; flanks "22676360^,22666324^"; structure "1-,2-"; splice_chain "22672173-,22666324-"; psi "0.076593";
chr3	juncbase	jcn_only_AD	124953144	124951498	.	-	.	gene_id "jcn_only_AD.1127"; transcript_id "jcn_only_AD.1127"; gene_name "CUFF.1975"; flanks "124953144-,124951498-"; structure "1^,2^"; splice_chain "124953144^,124951953^"; psi "0.902200";
chr1	juncbase	jcn_only_AA	16935003	16921508	.	-	.	gene_id "jcn_only_AA.919"; transcript_id "jcn_only_AA.919"; gene_name "CUFF.1975"; flanks "16935003^,16921508^"; structure "1-,2-"; splice_chain "16928338-,16921508-"; psi "0.789441";
chr2	juncbase	intron_retention	233101	231191	.	-	.	gene_id "intron_retention.1096"; transcript_id "intron_retention.1096"; gene_name "CUFF.1975"; flanks "233101-,231191^"; structure "0,1^2-"; splice_chain ",233101^231191-"; psi "0.077900";
chr6	juncbase	cassette	126320759	126329538	.	-	.	gene_id "cassette.823"; transcript_id "cassette.823"; gene_name "CUFF.1975"; flanks "126320759^,126329538-"; structure "0,1-2^"; splice_chain ",126327988-126328100^"; psi "0.290100";
chr17	juncbase	jcn_only_AD	15586350	15584267	.	-	.	gene_id "jcn_only_AD.1128"; transcript_id "jcn_only_AD.1128"; gene_name "CUFF.1975"; flanks "15586350-,15584267-"; structure "1^,2^"; splice_chain "15586350^,15584365^"; psi "0.936829";
chr17	juncbase	jcn_only_AD	15586175	15584267	.	-	.	gene_id "jcn_only_AD.1129"; transcript_id "jcn_only_AD.1129"; gene_name "CUFF.1975"; flanks "15586175-,15584267-"; structure "1^,2^"; splice_chain "15586175^,15584365^"; psi "0.718576";
chr17	juncbase	jcn_only_AD	15586168	15584267	.	-	.	gene_id "jcn_only_AD.1130"; transcript_id "jcn_only_AD.1130"; gene_name "CUFF.1975"; flanks "15586168-,15584267-"; structure "1^,2^"; splice_chain "15586168^,15584365^"; psi "0.954838";
chr17	juncbase	jcn_only_AA	1617150	1616198	.	-	.	gene_id "jcn_only_AA.920"; transcript_id "jcn_only_AA.920"; gene_name "CUFF.1975"; flanks "1617150^,1616198^"; structure "1-,2-"; splice_chain "1616349-,1616198-"; psi "0.331466";
chr17	juncbase	jcn_only_AA	1617150	1616189	.	-	.	gene_id "jcn_only_AA.921"; transcript_id "jcn_only_AA.921"; gene_name "CUFF.1975"; flanks "1617150^,1616189^"; structure "1-,2-"; splice_chain "1616349-,1616189-"; psi "0.260585";
chr17	juncbase	jcn_only_AA	1617150	1615693	.	-	.	gene_id "jcn_only_AA.922"; transcript_id "jcn_only_AA.922"; gene_name "CUFF.1975"; flanks "1617150^,1615693^"; structure "1-,2-"; splice_chain "1616349-,1615693-"; psi "0.222865";
chr17	juncbase	jcn_only_AA	1617150	1615940	.	-	.	gene_id "jcn_only_AA.923"; transcript_id "jcn_only_AA.923"; gene_name "CUFF.1975"; flanks "1617150^,1615940^"; structure "1-,2-"; splice_chain "1616349-,1615940-"; psi "0.161429";
chr7	juncbase	jcn_only_AA	107211711	107215633	.	-	.	gene_id "jcn_only_AA.924"; transcript_id "jcn_only_AA.924"; gene_name "CUFF.1975"; flanks "107211711^,107215633^"; structure "1-,2-"; splice_chain "107214149-,107215633-"; psi "0.977300";
chr7	juncbase	intron_retention	107220746	107224327	.	-	.	gene_id "intron_retention.1097"; transcript_id "intron_retention.1097"; gene_name "CUFF.1975"; flanks "107220746-,107224327^"; structure "0,1^2-"; splice_chain ",107220746^107224327-"; psi "0.143900";
chr1	juncbase	intron_retention	153927541	153927465	.	-	.	gene_id "intron_retention.1098"; transcript_id "intron_retention.1098"; gene_name "CUFF.1975"; flanks "153927541-,153927465^"; structure "0,1^2-"; splice_chain ",153927541^153927465-"; psi "0.350300";
chr3	juncbase	jcn_only_AD	107596749	107591873	.	-	.	gene_id "jcn_only_AD.1131"; transcript_id "jcn_only_AD.1131"; gene_name "CUFF.1975"; flanks "107596749-,107591873-"; structure "1^,2^"; splice_chain "107596749^,107594977^"; psi "0.070460";
chr11	juncbase	jcn_only_AD	124768294	124766951	.	-	.	gene_id "jcn_only_AD.1132"; transcript_id "jcn_only_AD.1132"; gene_name "CUFF.1975"; flanks "124768294-,124766951-"; structure "1^,2^"; splice_chain "124768294^,124767622^"; psi "0.850000";
chr3	juncbase	intron_retention	46965097	46964853	.	-	.	gene_id "intron_retention.1099"; transcript_id "intron_retention.1099"; gene_name "CUFF.1975"; flanks "46965097-,46964853^"; structure "0,1^2-"; splice_chain ",46965097^46964853-"; psi "0.269600";
chrX	juncbase	cassette	107381221	107393382	.	-	.	gene_id "cassette.824"; transcript_id "cassette.824"; gene_name "CUFF.1975"; flanks "107381221^,107393382-"; structure "0,1-2^"; splice_chain ",107381343-107381421^"; psi "0.819500";
chr7	juncbase	cassette	65592727	65599267	.	-	.	gene_id "cassette.825"; transcript_id "cassette.825"; gene_name "CUFF.1975"; flanks "65592727^,65599267-"; structure "0,1-2^"; splice_chain ",65595731-65595829^"; psi "0.347600";
chr1	juncbase	jcn_only_AD	31769943	31782891	.	-	.	gene_id "jcn_only_AD.1133"; transcript_id "jcn_only_AD.1133"; gene_name "CUFF.1975"; flanks "31769943-,31782891-"; structure "1^,2^"; splice_chain "31769943^,31770060^"; psi "0.115356";
chr1	juncbase	jcn_only_AD	31769922	31782891	.	-	.	gene_id "jcn_only_AD.1134"; transcript_id "jcn_only_AD.1134"; gene_name "CUFF.1975"; flanks "31769922-,31782891-"; structure "1^,2^"; splice_chain "31769922^,31770060^"; psi "0.359274";
chr19	juncbase	jcn_only_AD	1438891	1440018	.	-	.	gene_id "jcn_only_AD.1135"; transcript_id "jcn_only_AD.1135"; gene_name "CUFF.1975"; flanks "1438891-,1440018-"; structure "1^,2^"; splice_chain "1438891^,1439825^"; psi "0.872600";
chr3	juncbase	jcn_only_AA	107586158	107576049	.	-	.	gene_id "jcn_only_AA.925"; transcript_id "jcn_only_AA.925"; gene_name "CUFF.1975"; flanks "107586158^,107576049^"; structure "1-,2-"; splice_chain "107578108-,107576049-"; psi "0.940034";
chr15	juncbase	intron_retention	33023005	33023129	.	-	.	gene_id "intron_retention.1100"; transcript_id "intron_retention.1100"; gene_name "CUFF.1975"; flanks "33023005-,33023129^"; structure "0,1^2-"; splice_chain ",33023005^33023129-"; psi "0.138600";
chr22	juncbase	intron_retention	51020678	51020524	.	-	.	gene_id "intron_retention.1101"; transcript_id "intron_retention.1101"; gene_name "CUFF.1975"; flanks "51020678-,51020524^"; structure "0,1^2-"; splice_chain ",51020678^51020524-"; psi "0.648100";
chr19	juncbase	jcn_only_AA	1438891	1439715	.	-	.	gene_id "jcn_only_AA.926"; transcript_id "jcn_only_AA.926"; gene_name "CUFF.1975"; flanks "1438891^,1439715^"; structure "1-,2-"; splice_chain "1439605-,1439715-"; psi "0.834550";
chr19	juncbase	jcn_only_AA	1438891	1440018	.	-	.	gene_id "jcn_only_AA.927"; transcript_id "jcn_only_AA.927"; gene_name "CUFF.1975"; flanks "1438891^,1440018^"; structure "1-,2-"; splice_chain "1439605-,1440018-"; psi "0.981582";
chr19	juncbase	jcn_only_AA	1438891	1439960	.	-	.	gene_id "jcn_only_AA.928"; transcript_id "jcn_only_AA.928"; gene_name "CUFF.1975"; flanks "1438891^,1439960^"; structure "1-,2-"; splice_chain "1439605-,1439960-"; psi "0.595238";
chr19	juncbase	jcn_only_AA	1438891	1440025	.	-	.	gene_id "jcn_only_AA.929"; transcript_id "jcn_only_AA.929"; gene_name "CUFF.1975"; flanks "1438891^,1440025^"; structure "1-,2-"; splice_chain "1439605-,1440025-"; psi "0.716075";
chr19	juncbase	jcn_only_AA	1438891	1439967	.	-	.	gene_id "jcn_only_AA.930"; transcript_id "jcn_only_AA.930"; gene_name "CUFF.1975"; flanks "1438891^,1439967^"; structure "1-,2-"; splice_chain "1439605-,1439967-"; psi "0.910703";
chr5	juncbase	jcn_only_AD	44809665	44811111	.	-	.	gene_id "jcn_only_AD.1136"; transcript_id "jcn_only_AD.1136"; gene_name "CUFF.1975"; flanks "44809665-,44811111-"; structure "1^,2^"; splice_chain "44809665^,44810094^"; psi "0.818200";
chr13	juncbase	jcn_only_AA	97642012	97640029	.	-	.	gene_id "jcn_only_AA.931"; transcript_id "jcn_only_AA.931"; gene_name "CUFF.1975"; flanks "97642012^,97640029^"; structure "1-,2-"; splice_chain "97640087-,97640029-"; psi "0.641300";
chr19	juncbase	intron_retention	10394170	10394234	.	-	.	gene_id "intron_retention.1102"; transcript_id "intron_retention.1102"; gene_name "CUFF.1975"; flanks "10394170-,10394234^"; structure "0,1^2-"; splice_chain ",10394170^10394234-"; psi "0.827300";
chr1	juncbase	intron_retention	161953386	161953125	.	-	.	gene_id "intron_retention.1103"; transcript_id "intron_retention.1103"; gene_name "CUFF.1975"; flanks "161953386-,161953125^"; structure "0,1^2-"; splice_chain ",161953386^161953125-"; psi "0.230900";
chr5	juncbase	jcn_only_AA	50685766	50687177	.	-	.	gene_id "jcn_only_AA.932"; transcript_id "jcn_only_AA.932"; gene_name "CUFF.1975"; flanks "50685766^,50687177^"; structure "1-,2-"; splice_chain "50687108-,50687177-"; psi "0.276600";
chr4	juncbase	intron_retention	2932954	2932877	.	-	.	gene_id "intron_retention.1104"; transcript_id "intron_retention.1104"; gene_name "CUFF.1975"; flanks "2932954-,2932877^"; structure "0,1^2-"; splice_chain ",2932954^2932877-"; psi "0.112600";
chr17	juncbase	intron_retention	56082284	56081362	.	-	.	gene_id "intron_retention.1105"; transcript_id "intron_retention.1105"; gene_name "CUFF.1975"; flanks "56082284-,56081362^"; structure "0,1^2-"; splice_chain ",56082284^56081362-"; psi "0.600000";
chr5	juncbase	intron_retention	64887670	64887329	.	-	.	gene_id "intron_retention.1106"; transcript_id "intron_retention.1106"; gene_name "CUFF.1975"; flanks "64887670-,64887329^"; structure "0,1^2-"; splice_chain ",64887670^64887329-"; psi "0.550000";
chr16	juncbase	intron_retention	21730512	21730708	.	-	.	gene_id "intron_retention.1107"; transcript_id "intron_retention.1107"; gene_name "CUFF.1975"; flanks "21730512-,21730708^"; structure "0,1^2-"; splice_chain ",21730512^21730708-"; psi "0.008800";
chr22	juncbase	cassette	29674205	29682912	.	-	.	gene_id "cassette.826"; transcript_id "cassette.826"; gene_name "CUFF.1975"; flanks "29674205^,29682912-"; structure "0,1-2^"; splice_chain ",29678379-29678546^"; psi "0.882700";
chr22	juncbase	intron_retention	29684775	29687551	.	-	.	gene_id "intron_retention.1108"; transcript_id "intron_retention.1108"; gene_name "CUFF.1975"; flanks "29684775-,29687551^"; structure "0,1^2-"; splice_chain ",29684775^29687551-"; psi "0.168500";
chr12	juncbase	jcn_only_AD	21229503	21279042	.	-	.	gene_id "jcn_only_AD.1137"; transcript_id "jcn_only_AD.1137"; gene_name "CUFF.1975"; flanks "21229503-,21279042-"; structure "1^,2^"; splice_chain "21229503^,21242863^"; psi "0.170260";
chr11	juncbase	jcn_only_AD	36397708	36398179	.	-	.	gene_id "jcn_only_AD.1138"; transcript_id "jcn_only_AD.1138"; gene_name "CUFF.1975"; flanks "36397708-,36398179-"; structure "1^,2^"; splice_chain "36397708^,36397787^"; psi "0.554100";
chr18	juncbase	jcn_only_AD	72920375	72914295	.	-	.	gene_id "jcn_only_AD.1139"; transcript_id "jcn_only_AD.1139"; gene_name "CUFF.1975"; flanks "72920375-,72914295-"; structure "1^,2^"; splice_chain "72920375^,72920316^"; psi "0.140738";
chr16	juncbase	jcn_only_AA	57517870	57513597	.	-	.	gene_id "jcn_only_AA.933"; transcript_id "jcn_only_AA.933"; gene_name "CUFF.1975"; flanks "57517870^,57513597^"; structure "1-,2-"; splice_chain "57513600-,57513597-"; psi "0.629600";
chr9	juncbase	jcn_only_AD	130932299	130931798	.	-	.	gene_id "jcn_only_AD.1140"; transcript_id "jcn_only_AD.1140"; gene_name "CUFF.1975"; flanks "130932299-,130931798-"; structure "1^,2^"; splice_chain "130932299^,130931902^"; psi "0.937700";
chr16	juncbase	intron_retention	4414598	4414414	.	-	.	gene_id "intron_retention.1109"; transcript_id "intron_retention.1109"; gene_name "CUFF.1975"; flanks "4414598-,4414414^"; structure "0,1^2-"; splice_chain ",4414598^4414414-"; psi "0.120700";
chr4	juncbase	jcn_only_AA	152148912	152147238	.	-	.	gene_id "jcn_only_AA.934"; transcript_id "jcn_only_AA.934"; gene_name "CUFF.1975"; flanks "152148912^,152147238^"; structure "1-,2-"; splice_chain "152147392-,152147238-"; psi "0.052600";
chr2	juncbase	intron_retention	27680993	27680843	.	-	.	gene_id "intron_retention.1110"; transcript_id "intron_retention.1110"; gene_name "CUFF.1975"; flanks "27680993-,27680843^"; structure "0,1^2-"; splice_chain ",27680993^27680843-"; psi "0.003200";
chr14	juncbase	jcn_only_AD	75151157	75143455	.	-	.	gene_id "jcn_only_AD.1141"; transcript_id "jcn_only_AD.1141"; gene_name "CUFF.1975"; flanks "75151157-,75143455-"; structure "1^,2^"; splice_chain "75151157^,75144882^"; psi "0.775596";
chr14	juncbase	jcn_only_AD	75149999	75143455	.	-	.	gene_id "jcn_only_AD.1142"; transcript_id "jcn_only_AD.1142"; gene_name "CUFF.1975"; flanks "75149999-,75143455-"; structure "1^,2^"; splice_chain "75149999^,75144882^"; psi "0.478151";
chr7	juncbase	intron_retention	156471771	156471044	.	-	.	gene_id "intron_retention.1111"; transcript_id "intron_retention.1111"; gene_name "CUFF.1975"; flanks "156471771-,156471044^"; structure "0,1^2-"; splice_chain ",156471771^156471044-"; psi "0.730300";
chr20	juncbase	jcn_only_AA	34252801	34246904	.	-	.	gene_id "jcn_only_AA.935"; transcript_id "jcn_only_AA.935"; gene_name "CUFF.1975"; flanks "34252801^,34246904^"; structure "1-,2-"; splice_chain "34246936-,34246904-"; psi "0.743100";
chr10	juncbase	jcn_only_AA	73975965	73973089	.	-	.	gene_id "jcn_only_AA.936"; transcript_id "jcn_only_AA.936"; gene_name "CUFF.1975"; flanks "73975965^,73973089^"; structure "1-,2-"; splice_chain "73975867-,73973089-"; psi "0.701970";
chr10	juncbase	jcn_only_AA	73975965	73973035	.	-	.	gene_id "jcn_only_AA.937"; transcript_id "jcn_only_AA.937"; gene_name "CUFF.1975"; flanks "73975965^,73973035^"; structure "1-,2-"; splice_chain "73975867-,73973035-"; psi "0.752692";
chr10	juncbase	jcn_only_AA	73975965	73975612	.	-	.	gene_id "jcn_only_AA.938"; transcript_id "jcn_only_AA.938"; gene_name "CUFF.1975"; flanks "73975965^,73975612^"; structure "1-,2-"; splice_chain "73975867-,73975612-"; psi "0.374818";
chr10	juncbase	jcn_only_AA	73975965	73973109	.	-	.	gene_id "jcn_only_AA.939"; transcript_id "jcn_only_AA.939"; gene_name "CUFF.1975"; flanks "73975965^,73973109^"; structure "1-,2-"; splice_chain "73975867-,73973109-"; psi "0.440870";
chr17	juncbase	jcn_only_AA	66519067	66519866	.	-	.	gene_id "jcn_only_AA.940"; transcript_id "jcn_only_AA.940"; gene_name "CUFF.1975"; flanks "66519067^,66519866^"; structure "1-,2-"; splice_chain "66519855-,66519866-"; psi "0.941100";
chr19	juncbase	intron_retention	50306635	50308712	.	-	.	gene_id "intron_retention.1112"; transcript_id "intron_retention.1112"; gene_name "CUFF.1975"; flanks "50306635-,50308712^"; structure "0,1^2-"; splice_chain ",50306635^50308712-"; psi "0.939400";
chr3	juncbase	jcn_only_AA	49362135	49349087	.	-	.	gene_id "jcn_only_AA.941"; transcript_id "jcn_only_AA.941"; gene_name "CUFF.1975"; flanks "49362135^,49349087^"; structure "1-,2-"; splice_chain "49350046-,49349087-"; psi "0.916026";
chr3	juncbase	jcn_only_AA	49362135	49348170	.	-	.	gene_id "jcn_only_AA.942"; transcript_id "jcn_only_AA.942"; gene_name "CUFF.1975"; flanks "49362135^,49348170^"; structure "1-,2-"; splice_chain "49350046-,49348170-"; psi "0.267089";
chr11	juncbase	jcn_only_AD	2906432	2905364	.	-	.	gene_id "jcn_only_AD.1143"; transcript_id "jcn_only_AD.1143"; gene_name "CUFF.1975"; flanks "2906432-,2905364-"; structure "1^,2^"; splice_chain "2906432^,2905900^"; psi "0.171500";
chr3	juncbase	cassette	49339817	49336068	.	-	.	gene_id "cassette.827"; transcript_id "cassette.827"; gene_name "CUFF.1975"; flanks "49339817^,49336068-"; structure "0,1-2^"; splice_chain ",49338124-49337900^"; psi "0.884000";
chr15	juncbase	jcn_only_AD	57535748	57543548	.	-	.	gene_id "jcn_only_AD.1144"; transcript_id "jcn_only_AD.1144"; gene_name "CUFF.1975"; flanks "57535748-,57543548-"; structure "1^,2^"; splice_chain "57535748^,57540279^"; psi "0.226200";
chr7	juncbase	jcn_only_AD	117512158	117501370	.	-	.	gene_id "jcn_only_AD.1145"; transcript_id "jcn_only_AD.1145"; gene_name "CUFF.1975"; flanks "117512158-,117501370-"; structure "1^,2^"; splice_chain "117512158^,117511644^"; psi "0.459313";
chr7	juncbase	jcn_only_AD	117514055	117501370	.	-	.	gene_id "jcn_only_AD.1146"; transcript_id "jcn_only_AD.1146"; gene_name "CUFF.1975"; flanks "117514055-,117501370-"; structure "1^,2^"; splice_chain "117514055^,117511644^"; psi "0.759355";
chr14	juncbase	jcn_only_AD	23389407	23392181	.	-	.	gene_id "jcn_only_AD.1147"; transcript_id "jcn_only_AD.1147"; gene_name "CUFF.1975"; flanks "23389407-,23392181-"; structure "1^,2^"; splice_chain "23389407^,23390329^"; psi "0.823100";
chr7	juncbase	intron_retention	6639523	6639758	.	-	.	gene_id "intron_retention.1113"; transcript_id "intron_retention.1113"; gene_name "CUFF.1975"; flanks "6639523-,6639758^"; structure "0,1^2-"; splice_chain ",6639523^6639758-"; psi "0.824600";
chr7	juncbase	jcn_only_AD	73107999	73111935	.	-	.	gene_id "jcn_only_AD.1148"; transcript_id "jcn_only_AD.1148"; gene_name "CUFF.1975"; flanks "73107999-,73111935-"; structure "1^,2^"; splice_chain "73107999^,73111846^"; psi "0.518038";
chr7	juncbase	jcn_only_AD	73106976	73111935	.	-	.	gene_id "jcn_only_AD.1149"; transcript_id "jcn_only_AD.1149"; gene_name "CUFF.1975"; flanks "73106976-,73111935-"; structure "1^,2^"; splice_chain "73106976^,73111846^"; psi "0.910862";
chr7	juncbase	jcn_only_AD	73108380	73111935	.	-	.	gene_id "jcn_only_AD.1150"; transcript_id "jcn_only_AD.1150"; gene_name "CUFF.1975"; flanks "73108380-,73111935-"; structure "1^,2^"; splice_chain "73108380^,73111846^"; psi "0.946294";
chr3	juncbase	jcn_only_AA	127309253	127299006	.	-	.	gene_id "jcn_only_AA.943"; transcript_id "jcn_only_AA.943"; gene_name "CUFF.1975"; flanks "127309253^,127299006^"; structure "1-,2-"; splice_chain "127307003-,127299006-"; psi "0.663600";
chr2	juncbase	jcn_only_AA	27676849	27676380	.	-	.	gene_id "jcn_only_AA.944"; transcript_id "jcn_only_AA.944"; gene_name "CUFF.1975"; flanks "27676849^,27676380^"; structure "1-,2-"; splice_chain "27676606-,27676380-"; psi "0.284800";
chr9	juncbase	intron_retention	133320382	133327611	.	-	.	gene_id "intron_retention.1114"; transcript_id "intron_retention.1114"; gene_name "CUFF.1975"; flanks "133320382-,133327611^"; structure "0,1^2-"; splice_chain ",133320382^133327611-"; psi "0.409600";
chr17	juncbase	jcn_only_AD	79895138	79894737	.	-	.	gene_id "jcn_only_AD.1151"; transcript_id "jcn_only_AD.1151"; gene_name "CUFF.1975"; flanks "79895138-,79894737-"; structure "1^,2^"; splice_chain "79895138^,79894846^"; psi "0.624351";
chr17	juncbase	jcn_only_AD	79895404	79894737	.	-	.	gene_id "jcn_only_AD.1152"; transcript_id "jcn_only_AD.1152"; gene_name "CUFF.1975"; flanks "79895404-,79894737-"; structure "1^,2^"; splice_chain "79895404^,79894846^"; psi "0.173048";
chr17	juncbase	jcn_only_AD	79895134	79894737	.	-	.	gene_id "jcn_only_AD.1153"; transcript_id "jcn_only_AD.1153"; gene_name "CUFF.1975"; flanks "79895134-,79894737-"; structure "1^,2^"; splice_chain "79895134^,79894846^"; psi "0.578347";
chr17	juncbase	jcn_only_AD	79895056	79894737	.	-	.	gene_id "jcn_only_AD.1154"; transcript_id "jcn_only_AD.1154"; gene_name "CUFF.1975"; flanks "79895056-,79894737-"; structure "1^,2^"; splice_chain "79895056^,79894846^"; psi "0.097667";
chr17	juncbase	jcn_only_AD	79895069	79894737	.	-	.	gene_id "jcn_only_AD.1155"; transcript_id "jcn_only_AD.1155"; gene_name "CUFF.1975"; flanks "79895069-,79894737-"; structure "1^,2^"; splice_chain "79895069^,79894846^"; psi "0.449884";
chr17	juncbase	jcn_only_AD	79895104	79894737	.	-	.	gene_id "jcn_only_AD.1156"; transcript_id "jcn_only_AD.1156"; gene_name "CUFF.1975"; flanks "79895104-,79894737-"; structure "1^,2^"; splice_chain "79895104^,79894846^"; psi "0.457776";
chr3	juncbase	intron_retention	28358350	28361000	.	-	.	gene_id "intron_retention.1115"; transcript_id "intron_retention.1115"; gene_name "CUFF.1975"; flanks "28358350-,28361000^"; structure "0,1^2-"; splice_chain ",28358350^28361000-"; psi "0.886600";
chr3	juncbase	intron_retention	33644444	33644081	.	-	.	gene_id "intron_retention.1116"; transcript_id "intron_retention.1116"; gene_name "CUFF.1975"; flanks "33644444-,33644081^"; structure "0,1^2-"; splice_chain ",33644444^33644081-"; psi "0.241900";
chr2	juncbase	intron_retention	242437031	242435949	.	-	.	gene_id "intron_retention.1117"; transcript_id "intron_retention.1117"; gene_name "CUFF.1975"; flanks "242437031-,242435949^"; structure "0,1^2-"; splice_chain ",242437031^242435949-"; psi "0.045800";
chr4	juncbase	jcn_only_AD	74486156	74477546	.	-	.	gene_id "jcn_only_AD.1157"; transcript_id "jcn_only_AD.1157"; gene_name "CUFF.1975"; flanks "74486156-,74477546-"; structure "1^,2^"; splice_chain "74486156^,74486005^"; psi "0.016900";
chr14	juncbase	cassette	58956958	58965501	.	-	.	gene_id "cassette.828"; transcript_id "cassette.828"; gene_name "CUFF.1975"; flanks "58956958^,58965501-"; structure "0,1-2^"; splice_chain ",58958862-58958993^"; psi "0.209600";
chr11	juncbase	cassette	36398254	36422547	.	-	.	gene_id "cassette.829"; transcript_id "cassette.829"; gene_name "CUFF.1975"; flanks "36398254^,36422547-"; structure "0,1-2^"; splice_chain ",36415396-36415561^"; psi "0.556500";
chr15	juncbase	jcn_only_AD	57490023	57523350	.	-	.	gene_id "jcn_only_AD.1158"; transcript_id "jcn_only_AD.1158"; gene_name "CUFF.1975"; flanks "57490023-,57523350-"; structure "1^,2^"; splice_chain "57490023^,57506594^"; psi "0.842153";
chr11	juncbase	intron_retention	104916018	104915385	.	-	.	gene_id "intron_retention.1118"; transcript_id "intron_retention.1118"; gene_name "CUFF.1975"; flanks "104916018-,104915385^"; structure "0,1^2-"; splice_chain ",104916018^104915385-"; psi "0.186400";
chr6	juncbase	cassette	114292021	114281182	.	-	.	gene_id "cassette.830"; transcript_id "cassette.830"; gene_name "CUFF.1975"; flanks "114292021^,114281182-"; structure "0,1-2^"; splice_chain ",114289860-114289798^"; psi "0.340400";
chr6	juncbase	cassette	114291644	114281182	.	-	.	gene_id "cassette.831"; transcript_id "cassette.831"; gene_name "CUFF.1975"; flanks "114291644^,114281182-"; structure "0,1-2^"; splice_chain ",114289860-114289798^"; psi "0.340400";
chr6	juncbase	cassette	114292021	114283558	.	-	.	gene_id "cassette.832"; transcript_id "cassette.832"; gene_name "CUFF.1975"; flanks "114292021^,114283558-"; structure "0,1-2^"; splice_chain ",114289860-114289798^"; psi "0.340400";
chr11	juncbase	jcn_only_AA	61584168	61605250	.	-	.	gene_id "jcn_only_AA.945"; transcript_id "jcn_only_AA.945"; gene_name "CUFF.1975"; flanks "61584168^,61605250^"; structure "1-,2-"; splice_chain "61588853-,61605250-"; psi "0.207300";
chr1	juncbase	jcn_only_AD	156470278	156453222	.	-	.	gene_id "jcn_only_AD.1159"; transcript_id "jcn_only_AD.1159"; gene_name "CUFF.1975"; flanks "156470278-,156453222-"; structure "1^,2^"; splice_chain "156470278^,156469224^"; psi "0.701300";
chr14	juncbase	cassette	24470726	24475095	.	-	.	gene_id "cassette.833"; transcript_id "cassette.833"; gene_name "CUFF.1975"; flanks "24470726^,24475095-"; structure "0,1-2^"; splice_chain ",24473546-24473601^"; psi "0.691200";
chr19	juncbase	jcn_only_AA	11545594	11541840	.	-	.	gene_id "jcn_only_AA.946"; transcript_id "jcn_only_AA.946"; gene_name "CUFF.1975"; flanks "11545594^,11541840^"; structure "1-,2-"; splice_chain "11545351-,11541840-"; psi "0.837500";
chr2	juncbase	cassette	46842076	46839483	.	-	.	gene_id "cassette.834"; transcript_id "cassette.834"; gene_name "CUFF.1975"; flanks "46842076^,46839483-"; structure "0,1-2^"; splice_chain ",46840924-46840833^"; psi "0.892700";
chr12	juncbase	jcn_only_AA	13366755	13367505	.	-	.	gene_id "jcn_only_AA.947"; transcript_id "jcn_only_AA.947"; gene_name "CUFF.1975"; flanks "13366755^,13367505^"; structure "1-,2-"; splice_chain "13367468-,13367505-"; psi "0.725500";
chr1	juncbase	jcn_only_AD	245246785	245246924	.	-	.	gene_id "jcn_only_AD.1160"; transcript_id "jcn_only_AD.1160"; gene_name "CUFF.1975"; flanks "245246785-,245246924-"; structure "1^,2^"; splice_chain "245246785^,245246786^"; psi "0.000800";
chr17	juncbase	jcn_only_AD	79481573	79479386	.	-	.	gene_id "jcn_only_AD.1161"; transcript_id "jcn_only_AD.1161"; gene_name "CUFF.1975"; flanks "79481573-,79479386-"; structure "1^,2^"; splice_chain "79481573^,79479760^"; psi "0.059066";
chr17	juncbase	jcn_only_AD	79490668	79479386	.	-	.	gene_id "jcn_only_AD.1162"; transcript_id "jcn_only_AD.1162"; gene_name "CUFF.1975"; flanks "79490668-,79479386-"; structure "1^,2^"; splice_chain "79490668^,79479760^"; psi "0.404025";
chr3	juncbase	cassette	51747326	51749078	.	-	.	gene_id "cassette.835"; transcript_id "cassette.835"; gene_name "CUFF.1975"; flanks "51747326^,51749078-"; structure "0,1-2^"; splice_chain ",51747980-51748137^"; psi "0.737400";
chr16	juncbase	jcn_only_AD	67222923	67221041	.	-	.	gene_id "jcn_only_AD.1163"; transcript_id "jcn_only_AD.1163"; gene_name "CUFF.1975"; flanks "67222923-,67221041-"; structure "1^,2^"; splice_chain "67222923^,67221128^"; psi "0.428600";
chr15	juncbase	intron_retention	83349224	83348981	.	-	.	gene_id "intron_retention.1119"; transcript_id "intron_retention.1119"; gene_name "CUFF.1975"; flanks "83349224-,83348981^"; structure "0,1^2-"; splice_chain ",83349224^83348981-"; psi "0.289500";
chr3	juncbase	cassette	27203952	27183073	.	-	.	gene_id "cassette.836"; transcript_id "cassette.836"; gene_name "CUFF.1975"; flanks "27203952^,27183073-"; structure "0,1-2^"; splice_chain ",27184965-27184936^"; psi "0.064000";
chr19	juncbase	jcn_only_AD	11474495	11474837	.	-	.	gene_id "jcn_only_AD.1164"; transcript_id "jcn_only_AD.1164"; gene_name "CUFF.1975"; flanks "11474495-,11474837-"; structure "1^,2^"; splice_chain "11474495^,11474511^"; psi "0.593800";
chr18	juncbase	intron_retention	11981692	11999061	.	-	.	gene_id "intron_retention.1120"; transcript_id "intron_retention.1120"; gene_name "CUFF.1975"; flanks "11981692-,11999061^"; structure "0,1^2-"; splice_chain ",11981692^11999061-"; psi "0.872000";
chr2	juncbase	intron_retention	220100307	220100430	.	-	.	gene_id "intron_retention.1121"; transcript_id "intron_retention.1121"; gene_name "CUFF.1975"; flanks "220100307-,220100430^"; structure "0,1^2-"; splice_chain ",220100307^220100430-"; psi "0.491200";
chr15	juncbase	intron_retention	78080487	78080723	.	-	.	gene_id "intron_retention.1122"; transcript_id "intron_retention.1122"; gene_name "CUFF.1975"; flanks "78080487-,78080723^"; structure "0,1^2-"; splice_chain ",78080487^78080723-"; psi "0.305900";
chr3	juncbase	jcn_only_AD	33458250	33454319	.	-	.	gene_id "jcn_only_AD.1165"; transcript_id "jcn_only_AD.1165"; gene_name "CUFF.1975"; flanks "33458250-,33454319-"; structure "1^,2^"; splice_chain "33458250^,33457498^"; psi "0.826100";
chr6	juncbase	cassette	151773151	151757689	.	-	.	gene_id "cassette.837"; transcript_id "cassette.837"; gene_name "CUFF.1975"; flanks "151773151^,151757689-"; structure "0,1-2^"; splice_chain ",151766960-151766443^"; psi "0.836100";
chr15	juncbase	intron_retention	44876363	44876133	.	-	.	gene_id "intron_retention.1123"; transcript_id "intron_retention.1123"; gene_name "CUFF.1975"; flanks "44876363-,44876133^"; structure "0,1^2-"; splice_chain ",44876363^44876133-"; psi "0.741700";
chr22	juncbase	jcn_only_AD	21830291	21829589	.	-	.	gene_id "jcn_only_AD.1166"; transcript_id "jcn_only_AD.1166"; gene_name "CUFF.1975"; flanks "21830291-,21829589-"; structure "1^,2^"; splice_chain "21830291^,21830281^"; psi "0.058800";
chr4	juncbase	jcn_only_AA	6058424	6055875	.	-	.	gene_id "jcn_only_AA.948"; transcript_id "jcn_only_AA.948"; gene_name "CUFF.1975"; flanks "6058424^,6055875^"; structure "1-,2-"; splice_chain "6056530-,6055875-"; psi "0.938500";
chr10	juncbase	intron_retention	74095592	74094375	.	-	.	gene_id "intron_retention.1124"; transcript_id "intron_retention.1124"; gene_name "CUFF.1975"; flanks "74095592-,74094375^"; structure "0,1^2-"; splice_chain ",74095592^74094375-"; psi "0.918700";
chr10	juncbase	cassette	27065994	27059274	.	-	.	gene_id "cassette.838"; transcript_id "cassette.838"; gene_name "CUFF.1975"; flanks "27065994^,27059274-"; structure "0,1-2^"; splice_chain ",27059469-27059452^"; psi "0.701100";
chr17	juncbase	jcn_only_AD	61905569	61907212	.	-	.	gene_id "jcn_only_AD.1167"; transcript_id "jcn_only_AD.1167"; gene_name "CUFF.1975"; flanks "61905569-,61907212-"; structure "1^,2^"; splice_chain "61905569^,61906923^"; psi "0.041300";
chr12	juncbase	intron_retention	56709605	56709026	.	-	.	gene_id "intron_retention.1125"; transcript_id "intron_retention.1125"; gene_name "CUFF.1975"; flanks "56709605-,56709026^"; structure "0,1^2-"; splice_chain ",56709605^56709026-"; psi "0.017200";
chr6	juncbase	jcn_only_AD	28116602	28117261	.	-	.	gene_id "jcn_only_AD.1168"; transcript_id "jcn_only_AD.1168"; gene_name "CUFF.1975"; flanks "28116602-,28117261-"; structure "1^,2^"; splice_chain "28116602^,28116616^"; psi "0.052800";
chr3	juncbase	jcn_only_AA	107594977	107586272	.	-	.	gene_id "jcn_only_AA.949"; transcript_id "jcn_only_AA.949"; gene_name "CUFF.1975"; flanks "107594977^,107586272^"; structure "1-,2-"; splice_chain "107594421-,107586272-"; psi "0.494447";
chr3	juncbase	jcn_only_AA	107594977	107591873	.	-	.	gene_id "jcn_only_AA.950"; transcript_id "jcn_only_AA.950"; gene_name "CUFF.1975"; flanks "107594977^,107591873^"; structure "1-,2-"; splice_chain "107594421-,107591873-"; psi "0.883121";
chr3	juncbase	cassette	119263397	119246688	.	-	.	gene_id "cassette.839"; transcript_id "cassette.839"; gene_name "CUFF.1975"; flanks "119263397^,119246688-"; structure "0,1-2^"; splice_chain ",119256265-119255984^"; psi "0.242800";
chr6	juncbase	jcn_only_AA	5216851	5113651	.	-	.	gene_id "jcn_only_AA.951"; transcript_id "jcn_only_AA.951"; gene_name "CUFF.1975"; flanks "5216851^,5113651^"; structure "1-,2-"; splice_chain "5144496-,5113651-"; psi "0.905128";
chr6	juncbase	jcn_only_AA	5216851	5138973	.	-	.	gene_id "jcn_only_AA.952"; transcript_id "jcn_only_AA.952"; gene_name "CUFF.1975"; flanks "5216851^,5138973^"; structure "1-,2-"; splice_chain "5144496-,5138973-"; psi "0.919386";
chr14	juncbase	jcn_only_AA	69585911	69584992	.	-	.	gene_id "jcn_only_AA.953"; transcript_id "jcn_only_AA.953"; gene_name "CUFF.1975"; flanks "69585911^,69584992^"; structure "1-,2-"; splice_chain "69584995-,69584992-"; psi "0.195300";
chr7	juncbase	jcn_only_AD	156540618	156526951	.	-	.	gene_id "jcn_only_AD.1169"; transcript_id "jcn_only_AD.1169"; gene_name "CUFF.1975"; flanks "156540618-,156526951-"; structure "1^,2^"; splice_chain "156540618^,156529187^"; psi "0.693196";
chr7	juncbase	jcn_only_AD	156549087	156526951	.	-	.	gene_id "jcn_only_AD.1170"; transcript_id "jcn_only_AD.1170"; gene_name "CUFF.1975"; flanks "156549087-,156526951-"; structure "1^,2^"; splice_chain "156549087^,156529187^"; psi "0.942970";
chr19	juncbase	intron_retention	17447966	17448683	.	-	.	gene_id "intron_retention.1126"; transcript_id "intron_retention.1126"; gene_name "CUFF.1975"; flanks "17447966-,17448683^"; structure "0,1^2-"; splice_chain ",17447966^17448683-"; psi "0.491900";
chr6	juncbase	jcn_only_AA	31936315	31936463	.	-	.	gene_id "jcn_only_AA.954"; transcript_id "jcn_only_AA.954"; gene_name "CUFF.1975"; flanks "31936315^,31936463^"; structure "1-,2-"; splice_chain "31936400-,31936463-"; psi "0.881200";
chr12	juncbase	jcn_only_AA	13366509	13369378	.	-	.	gene_id "jcn_only_AA.955"; transcript_id "jcn_only_AA.955"; gene_name "CUFF.1975"; flanks "13366509^,13369378^"; structure "1-,2-"; splice_chain "13366615-,13369378-"; psi "0.031600";
chr14	juncbase	jcn_only_AA	75149999	75143455	.	-	.	gene_id "jcn_only_AA.956"; transcript_id "jcn_only_AA.956"; gene_name "CUFF.1975"; flanks "75149999^,75143455^"; structure "1-,2-"; splice_chain "75145032-,75143455-"; psi "0.493000";
chr3	juncbase	cassette	49463685	49462871	.	-	.	gene_id "cassette.840"; transcript_id "cassette.840"; gene_name "CUFF.1975"; flanks "49463685^,49462871-"; structure "0,1-2^"; splice_chain ",49463429-49463316^"; psi "0.959700";
chr3	juncbase	jcn_only_AD	112046541	112048193	.	-	.	gene_id "jcn_only_AD.1171"; transcript_id "jcn_only_AD.1171"; gene_name "CUFF.1975"; flanks "112046541-,112048193-"; structure "1^,2^"; splice_chain "112046541^,112046553^"; psi "0.530000";
chr8	juncbase	cassette	56676495	56668970	.	-	.	gene_id "cassette.841"; transcript_id "cassette.841"; gene_name "CUFF.1975"; flanks "56676495^,56668970-"; structure "0,1-2^"; splice_chain ",56675587-56675194^"; psi "0.928900";
chr17	juncbase	intron_retention	61562330	61562597	.	-	.	gene_id "intron_retention.1127"; transcript_id "intron_retention.1127"; gene_name "CUFF.1975"; flanks "61562330-,61562597^"; structure "0,1^2-"; splice_chain ",61562330^61562597-"; psi "0.559400";
chr19	juncbase	cassette	14877790	14876616	.	-	.	gene_id "cassette.842"; transcript_id "cassette.842"; gene_name "CUFF.1975"; flanks "14877790^,14876616-"; structure "0,1-2^"; splice_chain ",14877193-14877047^"; psi "0.388900";
chr6	juncbase	jcn_only_AD	128316607	128313854	.	-	.	gene_id "jcn_only_AD.1172"; transcript_id "jcn_only_AD.1172"; gene_name "CUFF.1975"; flanks "128316607-,128313854-"; structure "1^,2^"; splice_chain "128316607^,128316592^"; psi "0.897027";
chr16	juncbase	cassette	2653728	2663961	.	-	.	gene_id "cassette.843"; transcript_id "cassette.843"; gene_name "CUFF.1975"; flanks "2653728^,2663961-"; structure "0,1-2^"; splice_chain ",2660463-2661053^"; psi "0.285700";
chr12	juncbase	jcn_only_AD	21242863	21279042	.	-	.	gene_id "jcn_only_AD.1173"; transcript_id "jcn_only_AD.1173"; gene_name "CUFF.1975"; flanks "21242863-,21279042-"; structure "1^,2^"; splice_chain "21242863^,21272561^"; psi "0.674329";
chr12	juncbase	jcn_only_AD	21229503	21279042	.	-	.	gene_id "jcn_only_AD.1174"; transcript_id "jcn_only_AD.1174"; gene_name "CUFF.1975"; flanks "21229503-,21279042-"; structure "1^,2^"; splice_chain "21229503^,21272561^"; psi "0.298185";
chr12	juncbase	jcn_only_AA	57857574	57858486	.	-	.	gene_id "jcn_only_AA.957"; transcript_id "jcn_only_AA.957"; gene_name "CUFF.1975"; flanks "57857574^,57858486^"; structure "1-,2-"; splice_chain "57857782-,57858486-"; psi "0.681800";
chr20	juncbase	jcn_only_AA	31172372	31115716	.	-	.	gene_id "jcn_only_AA.958"; transcript_id "jcn_only_AA.958"; gene_name "CUFF.1975"; flanks "31172372^,31115716^"; structure "1-,2-"; splice_chain "31136688-,31115716-"; psi "0.741000";
chr11	juncbase	intron_retention	6621716	6621495	.	-	.	gene_id "intron_retention.1128"; transcript_id "intron_retention.1128"; gene_name "CUFF.1975"; flanks "6621716-,6621495^"; structure "0,1^2-"; splice_chain ",6621716^6621495-"; psi "0.104200";
chr22	juncbase	jcn_only_AA	45173109	45182337	.	-	.	gene_id "jcn_only_AA.959"; transcript_id "jcn_only_AA.959"; gene_name "CUFF.1975"; flanks "45173109^,45182337^"; structure "1-,2-"; splice_chain "45181922-,45182337-"; psi "0.895300";
chr6	juncbase	cassette	128326229	128320049	.	-	.	gene_id "cassette.844"; transcript_id "cassette.844"; gene_name "CUFF.1975"; flanks "128326229^,128320049-"; structure "0,1-2^"; splice_chain ",128324377-128324342^"; psi "0.963600";
chr8	juncbase	intron_retention	81083660	80965665	.	-	.	gene_id "intron_retention.1129"; transcript_id "intron_retention.1129"; gene_name "CUFF.1975"; flanks "81083660-,80965665^"; structure "0,1^2-"; splice_chain ",81083660^80965665-"; psi "0.692300";
chr4	juncbase	jcn_only_AD	6058424	6055875	.	-	.	gene_id "jcn_only_AD.1175"; transcript_id "jcn_only_AD.1175"; gene_name "CUFF.1975"; flanks "6058424-,6055875-"; structure "1^,2^"; splice_chain "6058424^,6056475^"; psi "0.923400";
chr11	juncbase	jcn_only_AA	36317988	36422547	.	-	.	gene_id "jcn_only_AA.960"; transcript_id "jcn_only_AA.960"; gene_name "CUFF.1975"; flanks "36317988^,36422547^"; structure "1-,2-"; splice_chain "36318921-,36422547-"; psi "0.885100";
chr11	juncbase	jcn_only_AA	61608197	61615631	.	-	.	gene_id "jcn_only_AA.961"; transcript_id "jcn_only_AA.961"; gene_name "CUFF.1975"; flanks "61608197^,61615631^"; structure "1-,2-"; splice_chain "61615293-,61615631-"; psi "0.879200";
chr22	juncbase	jcn_only_AA	29538088	29563032	.	-	.	gene_id "jcn_only_AA.962"; transcript_id "jcn_only_AA.962"; gene_name "CUFF.1975"; flanks "29538088^,29563032^"; structure "1-,2-"; splice_chain "29550326-,29563032-"; psi "0.551700";
chr17	juncbase	intron_retention	66509111	66511128	.	-	.	gene_id "intron_retention.1130"; transcript_id "intron_retention.1130"; gene_name "CUFF.1975"; flanks "66509111-,66511128^"; structure "0,1^2-"; splice_chain ",66509111^66511128-"; psi "0.483600";
chr12	juncbase	jcn_only_AD	120149983	120148425	.	-	.	gene_id "jcn_only_AD.1176"; transcript_id "jcn_only_AD.1176"; gene_name "CUFF.1975"; flanks "120149983-,120148425-"; structure "1^,2^"; splice_chain "120149983^,120148854^"; psi "0.808800";
chr2	juncbase	intron_retention	242590526	242592927	.	-	.	gene_id "intron_retention.1131"; transcript_id "intron_retention.1131"; gene_name "CUFF.1975"; flanks "242590526-,242592927^"; structure "0,1^2-"; splice_chain ",242590526^242592927-"; psi "0.733300";
chr6	juncbase	cassette	161518208	161522924	.	-	.	gene_id "cassette.845"; transcript_id "cassette.845"; gene_name "CUFF.1975"; flanks "161518208^,161522924-"; structure "0,1-2^"; splice_chain ",161519310-161519459^"; psi "0.539500";
chr12	juncbase	intron_retention	58013661	58014125	.	-	.	gene_id "intron_retention.1132"; transcript_id "intron_retention.1132"; gene_name "CUFF.1975"; flanks "58013661-,58014125^"; structure "0,1^2-"; splice_chain ",58013661^58014125-"; psi "0.605300";
chr1	juncbase	intron_retention	158592773	158590256	.	-	.	gene_id "intron_retention.1133"; transcript_id "intron_retention.1133"; gene_name "CUFF.1975"; flanks "158592773-,158590256^"; structure "0,1^2-"; splice_chain ",158592773^158590256-"; psi "0.953100";
chr3	juncbase	jcn_only_AD	28357914	28361000	.	-	.	gene_id "jcn_only_AD.1177"; transcript_id "jcn_only_AD.1177"; gene_name "CUFF.1975"; flanks "28357914-,28361000-"; structure "1^,2^"; splice_chain "28357914^,28358350^"; psi "0.937389";
chr11	juncbase	jcn_only_AD	10827454	10823982	.	-	.	gene_id "jcn_only_AD.1178"; transcript_id "jcn_only_AD.1178"; gene_name "CUFF.1975"; flanks "10827454-,10823982-"; structure "1^,2^"; splice_chain "10827454^,10824577^"; psi "0.312900";
chr22	juncbase	jcn_only_AD	51016978	51016363	.	-	.	gene_id "jcn_only_AD.1179"; transcript_id "jcn_only_AD.1179"; gene_name "CUFF.1975"; flanks "51016978-,51016363-"; structure "1^,2^"; splice_chain "51016978^,51016815^"; psi "0.526544";
chr22	juncbase	cassette	18111369	18096086	.	-	.	gene_id "cassette.846"; transcript_id "cassette.846"; gene_name "CUFF.1975"; flanks "18111369^,18096086-"; structure "0,1-2^"; splice_chain ",18102292-18102227^"; psi "0.919400";
chr5	juncbase	jcn_only_AA	40936587	40937654	.	-	.	gene_id "jcn_only_AA.963"; transcript_id "jcn_only_AA.963"; gene_name "CUFF.1975"; flanks "40936587^,40937654^"; structure "1-,2-"; splice_chain "40937340-,40937654-"; psi "0.440700";
chr14	juncbase	intron_retention	92915503	92920244	.	-	.	gene_id "intron_retention.1134"; transcript_id "intron_retention.1134"; gene_name "CUFF.1975"; flanks "92915503-,92920244^"; structure "0,1^2-"; splice_chain ",92915503^92920244-"; psi "0.671600";
chr3	juncbase	cassette	47023422	47018333	.	-	.	gene_id "cassette.847"; transcript_id "cassette.847"; gene_name "CUFF.1975"; flanks "47023422^,47018333-"; structure "0,1-2^"; splice_chain ",47018530-47018428^"; psi "0.676300";
chr17	juncbase	intron_retention	37822032	37822105	.	-	.	gene_id "intron_retention.1135"; transcript_id "intron_retention.1135"; gene_name "CUFF.1975"; flanks "37822032-,37822105^"; structure "0,1^2-"; splice_chain ",37822032^37822105-"; psi "0.386000";
chr17	juncbase	intron_retention	61904874	61905034	.	-	.	gene_id "intron_retention.1136"; transcript_id "intron_retention.1136"; gene_name "CUFF.1975"; flanks "61904874-,61905034^"; structure "0,1^2-"; splice_chain ",61904874^61905034-"; psi "0.636900";
chr9	juncbase	cassette	107690216	107651476	.	-	.	gene_id "cassette.848"; transcript_id "cassette.848"; gene_name "CUFF.1975"; flanks "107690216^,107651476-"; structure "0,1-2^"; splice_chain ",107666052-107665895^"; psi "0.363600";
chr6	juncbase	jcn_only_AD	5260881	5109725	.	-	.	gene_id "jcn_only_AD.1180"; transcript_id "jcn_only_AD.1180"; gene_name "CUFF.1975"; flanks "5260881-,5109725-"; structure "1^,2^"; splice_chain "5260881^,5113305^"; psi "0.179841";
chr6	juncbase	jcn_only_AD	5144372	5109725	.	-	.	gene_id "jcn_only_AD.1181"; transcript_id "jcn_only_AD.1181"; gene_name "CUFF.1975"; flanks "5144372-,5109725-"; structure "1^,2^"; splice_chain "5144372^,5113305^"; psi "0.088617";
chr6	juncbase	jcn_only_AD	5132952	5109725	.	-	.	gene_id "jcn_only_AD.1182"; transcript_id "jcn_only_AD.1182"; gene_name "CUFF.1975"; flanks "5132952-,5109725-"; structure "1^,2^"; splice_chain "5132952^,5113305^"; psi "0.098805";
chr19	juncbase	jcn_only_AA	1438891	1440025	.	-	.	gene_id "jcn_only_AA.964"; transcript_id "jcn_only_AA.964"; gene_name "CUFF.1975"; flanks "1438891^,1440025^"; structure "1-,2-"; splice_chain "1440018-,1440025-"; psi "0.045185";
chr2	juncbase	intron_retention	219221910	219222257	.	-	.	gene_id "intron_retention.1137"; transcript_id "intron_retention.1137"; gene_name "CUFF.1975"; flanks "219221910-,219222257^"; structure "0,1^2-"; splice_chain ",219221910^219222257-"; psi "0.317500";
chr7	juncbase	jcn_only_AA	38768142	38766588	.	-	.	gene_id "jcn_only_AA.965"; transcript_id "jcn_only_AA.965"; gene_name "CUFF.1975"; flanks "38768142^,38766588^"; structure "1-,2-"; splice_chain "38768034-,38766588-"; psi "0.510500";
chr5	juncbase	cassette	127418427	127412785	.	-	.	gene_id "cassette.849"; transcript_id "cassette.849"; gene_name "CUFF.1975"; flanks "127418427^,127412785-"; structure "0,1-2^"; splice_chain ",127417886-127417665^"; psi "0.673500";
chr5	juncbase	cassette	127418427	127396936	.	-	.	gene_id "cassette.850"; transcript_id "cassette.850"; gene_name "CUFF.1975"; flanks "127418427^,127396936-"; structure "0,1-2^"; splice_chain ",127417886-127417665^"; psi "0.673500";
chr2	juncbase	intron_retention	61720050	61719883	.	-	.	gene_id "intron_retention.1138"; transcript_id "intron_retention.1138"; gene_name "CUFF.1975"; flanks "61720050-,61719883^"; structure "0,1^2-"; splice_chain ",61720050^61719883-"; psi "0.502000";
chr19	juncbase	jcn_only_AD	4323143	4323345	.	-	.	gene_id "jcn_only_AD.1183"; transcript_id "jcn_only_AD.1183"; gene_name "CUFF.1975"; flanks "4323143-,4323345-"; structure "1^,2^"; splice_chain "4323143^,4323210^"; psi "0.641570";
chr12	juncbase	intron_retention	4662313	4665597	.	-	.	gene_id "intron_retention.1139"; transcript_id "intron_retention.1139"; gene_name "CUFF.1975"; flanks "4662313-,4665597^"; structure "0,1^2-"; splice_chain ",4662313^4665597-"; psi "0.941700";
chr17	juncbase	jcn_only_AA	21438689	21437282	.	-	.	gene_id "jcn_only_AA.966"; transcript_id "jcn_only_AA.966"; gene_name "CUFF.1975"; flanks "21438689^,21437282^"; structure "1-,2-"; splice_chain "21437832-,21437282-"; psi "0.785700";
chr1	juncbase	jcn_only_AD	156450626	156449138	.	-	.	gene_id "jcn_only_AD.1184"; transcript_id "jcn_only_AD.1184"; gene_name "CUFF.1975"; flanks "156450626-,156449138-"; structure "1^,2^"; splice_chain "156450626^,156449378^"; psi "0.201066";
chr11	juncbase	jcn_only_AD	10823841	10819428	.	-	.	gene_id "jcn_only_AD.1185"; transcript_id "jcn_only_AD.1185"; gene_name "CUFF.1975"; flanks "10823841-,10819428-"; structure "1^,2^"; splice_chain "10823841^,10820539^"; psi "0.182500";
chr6	juncbase	intron_retention	133055392	133047977	.	-	.	gene_id "intron_retention.1140"; transcript_id "intron_retention.1140"; gene_name "CUFF.1975"; flanks "133055392-,133047977^"; structure "0,1^2-"; splice_chain ",133055392^133047977-"; psi "0.801700";
chr1	juncbase	cassette	169700976	169698814	.	-	.	gene_id "cassette.851"; transcript_id "cassette.851"; gene_name "CUFF.1975"; flanks "169700976^,169698814-"; structure "0,1-2^"; splice_chain ",169699758-169699573^"; psi "0.680700";
chr10	juncbase	jcn_only_AD	46168127	46159290	.	-	.	gene_id "jcn_only_AD.1186"; transcript_id "jcn_only_AD.1186"; gene_name "CUFF.1975"; flanks "46168127-,46159290-"; structure "1^,2^"; splice_chain "46168127^,46167720^"; psi "0.691733";
chr14	juncbase	intron_retention	24568929	24569204	.	-	.	gene_id "intron_retention.1141"; transcript_id "intron_retention.1141"; gene_name "CUFF.1975"; flanks "24568929-,24569204^"; structure "0,1^2-"; splice_chain ",24568929^24569204-"; psi "0.303800";
chr9	juncbase	intron_retention	34992983	34993197	.	-	.	gene_id "intron_retention.1142"; transcript_id "intron_retention.1142"; gene_name "CUFF.1975"; flanks "34992983-,34993197^"; structure "0,1^2-"; splice_chain ",34992983^34993197-"; psi "0.774200";
chr14	juncbase	intron_retention	104200704	104200259	.	-	.	gene_id "intron_retention.1143"; transcript_id "intron_retention.1143"; gene_name "CUFF.1975"; flanks "104200704-,104200259^"; structure "0,1^2-"; splice_chain ",104200704^104200259-"; psi "0.910400";
chr14	juncbase	jcn_only_AD	92792322	92900256	.	-	.	gene_id "jcn_only_AD.1187"; transcript_id "jcn_only_AD.1187"; gene_name "CUFF.1975"; flanks "92792322-,92900256-"; structure "1^,2^"; splice_chain "92792322^,92874778^"; psi "0.655500";
chr3	juncbase	intron_retention	125802936	125787089	.	-	.	gene_id "intron_retention.1144"; transcript_id "intron_retention.1144"; gene_name "CUFF.1975"; flanks "125802936-,125787089^"; structure "0,1^2-"; splice_chain ",125802936^125787089-"; psi "0.041300";
chr16	juncbase	jcn_only_AA	70268077	70267573	.	-	.	gene_id "jcn_only_AA.967"; transcript_id "jcn_only_AA.967"; gene_name "CUFF.1975"; flanks "70268077^,70267573^"; structure "1-,2-"; splice_chain "70267605-,70267573-"; psi "0.076900";
chr12	juncbase	jcn_only_AA	77256956	77254193	.	-	.	gene_id "jcn_only_AA.968"; transcript_id "jcn_only_AA.968"; gene_name "CUFF.1975"; flanks "77256956^,77254193^"; structure "1-,2-"; splice_chain "77256739-,77254193-"; psi "0.959300";
chr17	juncbase	jcn_only_AA	61904874	61905211	.	-	.	gene_id "jcn_only_AA.969"; transcript_id "jcn_only_AA.969"; gene_name "CUFF.1975"; flanks "61904874^,61905211^"; structure "1-,2-"; splice_chain "61905034-,61905211-"; psi "0.761321";
chr17	juncbase	jcn_only_AA	61904874	61905189	.	-	.	gene_id "jcn_only_AA.970"; transcript_id "jcn_only_AA.970"; gene_name "CUFF.1975"; flanks "61904874^,61905189^"; structure "1-,2-"; splice_chain "61905034-,61905189-"; psi "0.462423";
chr17	juncbase	jcn_only_AA	61904874	61905479	.	-	.	gene_id "jcn_only_AA.971"; transcript_id "jcn_only_AA.971"; gene_name "CUFF.1975"; flanks "61904874^,61905479^"; structure "1-,2-"; splice_chain "61905034-,61905479-"; psi "0.500000";
chr17	juncbase	jcn_only_AA	61904874	61905498	.	-	.	gene_id "jcn_only_AA.972"; transcript_id "jcn_only_AA.972"; gene_name "CUFF.1975"; flanks "61904874^,61905498^"; structure "1-,2-"; splice_chain "61905034-,61905498-"; psi "0.891318";
chr22	juncbase	jcn_only_AA	29521404	29533490	.	-	.	gene_id "jcn_only_AA.973"; transcript_id "jcn_only_AA.973"; gene_name "CUFF.1975"; flanks "29521404^,29533490^"; structure "1-,2-"; splice_chain "29533330-,29533490-"; psi "0.713100";
chr11	juncbase	jcn_only_AA	119056219	119056634	.	-	.	gene_id "jcn_only_AA.974"; transcript_id "jcn_only_AA.974"; gene_name "CUFF.1975"; flanks "119056219^,119056634^"; structure "1-,2-"; splice_chain "119056631-,119056634-"; psi "0.805416";
chr2	juncbase	jcn_only_AA	61764697	61761038	.	-	.	gene_id "jcn_only_AA.975"; transcript_id "jcn_only_AA.975"; gene_name "CUFF.1975"; flanks "61764697^,61761038^"; structure "1-,2-"; splice_chain "61761813-,61761038-"; psi "0.508300";
chr3	juncbase	jcn_only_AD	107585499	107576049	.	-	.	gene_id "jcn_only_AD.1188"; transcript_id "jcn_only_AD.1188"; gene_name "CUFF.1975"; flanks "107585499-,107576049-"; structure "1^,2^"; splice_chain "107585499^,107577978^"; psi "0.480535";
chr3	juncbase	jcn_only_AD	107586158	107576049	.	-	.	gene_id "jcn_only_AD.1189"; transcript_id "jcn_only_AD.1189"; gene_name "CUFF.1975"; flanks "107586158-,107576049-"; structure "1^,2^"; splice_chain "107586158^,107577978^"; psi "0.910576";
chr3	juncbase	jcn_only_AD	107591815	107576049	.	-	.	gene_id "jcn_only_AD.1190"; transcript_id "jcn_only_AD.1190"; gene_name "CUFF.1975"; flanks "107591815-,107576049-"; structure "1^,2^"; splice_chain "107591815^,107577978^"; psi "0.918682";
chr11	juncbase	jcn_only_AA	118404844	118404984	.	-	.	gene_id "jcn_only_AA.976"; transcript_id "jcn_only_AA.976"; gene_name "CUFF.1975"; flanks "118404844^,118404984^"; structure "1-,2-"; splice_chain "118404981-,118404984-"; psi "0.241000";
chr17	juncbase	jcn_only_AA	15580889	15580591	.	-	.	gene_id "jcn_only_AA.977"; transcript_id "jcn_only_AA.977"; gene_name "CUFF.1975"; flanks "15580889^,15580591^"; structure "1-,2-"; splice_chain "15580594-,15580591-"; psi "0.493700";
chr1	juncbase	jcn_only_AA	120539620	120529705	.	-	.	gene_id "jcn_only_AA.978"; transcript_id "jcn_only_AA.978"; gene_name "CUFF.1975"; flanks "120539620^,120529705^"; structure "1-,2-"; splice_chain "120539369-,120529705-"; psi "0.666700";
chr2	juncbase	cassette	86398331	86393767	.	-	.	gene_id "cassette.852"; transcript_id "cassette.852"; gene_name "CUFF.1975"; flanks "86398331^,86393767-"; structure "0,1-2^"; splice_chain ",86397967-86397872^"; psi "0.960500";
chr11	juncbase	intron_retention	119056337	119056558	.	-	.	gene_id "intron_retention.1145"; transcript_id "intron_retention.1145"; gene_name "CUFF.1975"; flanks "119056337-,119056558^"; structure "0,1^2-"; splice_chain ",119056337^119056558-"; psi "0.541700";
chr6	juncbase	cassette	128330275	128326389	.	-	.	gene_id "cassette.853"; transcript_id "cassette.853"; gene_name "CUFF.1975"; flanks "128330275^,128326389-"; structure "0,1-2^"; splice_chain ",128327200-128327171^"; psi "0.914500";
chr17	juncbase	jcn_only_AD	79900172	79894069	.	-	.	gene_id "jcn_only_AD.1191"; transcript_id "jcn_only_AD.1191"; gene_name "CUFF.1975"; flanks "79900172-,79894069-"; structure "1^,2^"; splice_chain "79900172^,79898626^"; psi "0.341981";
chr2	juncbase	jcn_only_AA	86398331	86397964	.	-	.	gene_id "jcn_only_AA.979"; transcript_id "jcn_only_AA.979"; gene_name "CUFF.1975"; flanks "86398331^,86397964^"; structure "1-,2-"; splice_chain "86397967-,86397964-"; psi "0.047900";
chr4	juncbase	jcn_only_AD	83821230	83816000	.	-	.	gene_id "jcn_only_AD.1192"; transcript_id "jcn_only_AD.1192"; gene_name "CUFF.1975"; flanks "83821230-,83816000-"; structure "1^,2^"; splice_chain "83821230^,83816845^"; psi "0.445800";
chr22	juncbase	intron_retention	20748624	20749623	.	-	.	gene_id "intron_retention.1146"; transcript_id "intron_retention.1146"; gene_name "CUFF.1975"; flanks "20748624-,20749623^"; structure "0,1^2-"; splice_chain ",20748624^20749623-"; psi "0.659100";
chr17	juncbase	intron_retention	1617150	1615940	.	-	.	gene_id "intron_retention.1147"; transcript_id "intron_retention.1147"; gene_name "CUFF.1975"; flanks "1617150-,1615940^"; structure "0,1^2-"; splice_chain ",1617150^1615940-"; psi "0.925800";
chr8	juncbase	cassette	56685828	56668970	.	-	.	gene_id "cassette.854"; transcript_id "cassette.854"; gene_name "CUFF.1975"; flanks "56685828^,56668970-"; structure "0,1-2^"; splice_chain ",56676539-56676495^"; psi "0.578900";
chr2	juncbase	jcn_only_AA	110922265	110920709	.	-	.	gene_id "jcn_only_AA.980"; transcript_id "jcn_only_AA.980"; gene_name "CUFF.1975"; flanks "110922265^,110920709^"; structure "1-,2-"; splice_chain "110920712-,110920709-"; psi "0.909500";
chr7	juncbase	jcn_only_AD	102517914	102473421	.	-	.	gene_id "jcn_only_AD.1193"; transcript_id "jcn_only_AD.1193"; gene_name "CUFF.1975"; flanks "102517914-,102473421-"; structure "1^,2^"; splice_chain "102517914^,102495224^"; psi "0.255300";
chr3	juncbase	jcn_only_AA	107596160	107586272	.	-	.	gene_id "jcn_only_AA.981"; transcript_id "jcn_only_AA.981"; gene_name "CUFF.1975"; flanks "107596160^,107586272^"; structure "1-,2-"; splice_chain "107595033-,107586272-"; psi "0.709677";
chr2	juncbase	jcn_only_AD	61764697	61761038	.	-	.	gene_id "jcn_only_AD.1194"; transcript_id "jcn_only_AD.1194"; gene_name "CUFF.1975"; flanks "61764697-,61761038-"; structure "1^,2^"; splice_chain "61764697^,61764154^"; psi "0.241555";
chr2	juncbase	jcn_only_AD	61765627	61761038	.	-	.	gene_id "jcn_only_AD.1195"; transcript_id "jcn_only_AD.1195"; gene_name "CUFF.1975"; flanks "61765627-,61761038-"; structure "1^,2^"; splice_chain "61765627^,61764154^"; psi "0.094735";
chr12	juncbase	intron_retention	58017696	58017786	.	-	.	gene_id "intron_retention.1148"; transcript_id "intron_retention.1148"; gene_name "CUFF.1975"; flanks "58017696-,58017786^"; structure "0,1^2-"; splice_chain ",58017696^58017786-"; psi "0.924600";
chr6	juncbase	jcn_only_AA	133055619	133055522	.	-	.	gene_id "jcn_only_AA.982"; transcript_id "jcn_only_AA.982"; gene_name "CUFF.1975"; flanks "133055619^,133055522^"; structure "1-,2-"; splice_chain "133055525-,133055522-"; psi "0.981600";
chr2	juncbase	jcn_only_AA	232026223	232029914	.	-	.	gene_id "jcn_only_AA.983"; transcript_id "jcn_only_AA.983"; gene_name "CUFF.1975"; flanks "232026223^,232029914^"; structure "1-,2-"; splice_chain "232028349-,232029914-"; psi "0.886600";
chr12	juncbase	intron_retention	7090972	7090344	.	-	.	gene_id "intron_retention.1149"; transcript_id "intron_retention.1149"; gene_name "CUFF.1975"; flanks "7090972-,7090344^"; structure "0,1^2-"; splice_chain ",7090972^7090344-"; psi "0.078600";
chr16	juncbase	jcn_only_AA	31368422	31368655	.	-	.	gene_id "jcn_only_AA.984"; transcript_id "jcn_only_AA.984"; gene_name "CUFF.1975"; flanks "31368422^,31368655^"; structure "1-,2-"; splice_chain "31368574-,31368655-"; psi "0.940200";
chr19	juncbase	jcn_only_AD	35642376	35642536	.	-	.	gene_id "jcn_only_AD.1196"; transcript_id "jcn_only_AD.1196"; gene_name "CUFF.1975"; flanks "35642376-,35642536-"; structure "1^,2^"; splice_chain "35642376^,35642385^"; psi "0.498500";
chr18	juncbase	intron_retention	12658204	12658573	.	-	.	gene_id "intron_retention.1150"; transcript_id "intron_retention.1150"; gene_name "CUFF.1975"; flanks "12658204-,12658573^"; structure "0,1^2-"; splice_chain ",12658204^12658573-"; psi "0.544300";
chr16	juncbase	cassette	67218805	67218507	.	-	.	gene_id "cassette.855"; transcript_id "cassette.855"; gene_name "CUFF.1975"; flanks "67218805^,67218507-"; structure "0,1-2^"; splice_chain ",67218713-67218589^"; psi "0.416700";
chr11	juncbase	intron_retention	119290761	119290230	.	-	.	gene_id "intron_retention.1151"; transcript_id "intron_retention.1151"; gene_name "CUFF.1975"; flanks "119290761-,119290230^"; structure "0,1^2-"; splice_chain ",119290761^119290230-"; psi "0.101900";
chr5	juncbase	cassette	64920021	64910046	.	-	.	gene_id "cassette.856"; transcript_id "cassette.856"; gene_name "CUFF.1975"; flanks "64920021^,64910046-"; structure "0,1-2^"; splice_chain ",64914082-64913920^"; psi "0.769200";
chr19	juncbase	cassette	54656736	54657234	.	-	.	gene_id "cassette.857"; transcript_id "cassette.857"; gene_name "CUFF.1975"; flanks "54656736^,54657234-"; structure "0,1-2^"; splice_chain ",54656918-54657130^"; psi "0.744000";
chr16	juncbase	intron_retention	70399034	70399988	.	-	.	gene_id "intron_retention.1152"; transcript_id "intron_retention.1152"; gene_name "CUFF.1975"; flanks "70399034-,70399988^"; structure "0,1^2-"; splice_chain ",70399034^70399988-"; psi "0.177100";
chr6	juncbase	jcn_only_AA	43484465	43483833	.	-	.	gene_id "jcn_only_AA.985"; transcript_id "jcn_only_AA.985"; gene_name "CUFF.1975"; flanks "43484465^,43483833^"; structure "1-,2-"; splice_chain "43483928-,43483833-"; psi "0.866496";
chr6	juncbase	jcn_only_AA	43484465	43483851	.	-	.	gene_id "jcn_only_AA.986"; transcript_id "jcn_only_AA.986"; gene_name "CUFF.1975"; flanks "43484465^,43483851^"; structure "1-,2-"; splice_chain "43483928-,43483851-"; psi "0.762557";
chr6	juncbase	jcn_only_AA	43484465	43483925	.	-	.	gene_id "jcn_only_AA.987"; transcript_id "jcn_only_AA.987"; gene_name "CUFF.1975"; flanks "43484465^,43483925^"; structure "1-,2-"; splice_chain "43483928-,43483925-"; psi "0.986539";
chr6	juncbase	jcn_only_AA	43484465	43483784	.	-	.	gene_id "jcn_only_AA.988"; transcript_id "jcn_only_AA.988"; gene_name "CUFF.1975"; flanks "43484465^,43483784^"; structure "1-,2-"; splice_chain "43483928-,43483784-"; psi "0.923698";
chr5	juncbase	jcn_only_AA	139915123	139916974	.	-	.	gene_id "jcn_only_AA.989"; transcript_id "jcn_only_AA.989"; gene_name "CUFF.1975"; flanks "139915123^,139916974^"; structure "1-,2-"; splice_chain "139916923-,139916974-"; psi "0.166700";
chr22	juncbase	intron_retention	51018787	51018700	.	-	.	gene_id "intron_retention.1153"; transcript_id "intron_retention.1153"; gene_name "CUFF.1975"; flanks "51018787-,51018700^"; structure "0,1^2-"; splice_chain ",51018787^51018700-"; psi "0.445900";
chr11	juncbase	intron_retention	10828802	10827557	.	-	.	gene_id "intron_retention.1154"; transcript_id "intron_retention.1154"; gene_name "CUFF.1975"; flanks "10828802-,10827557^"; structure "0,1^2-"; splice_chain ",10828802^10827557-"; psi "0.893300";
chr19	juncbase	intron_retention	17447843	17448817	.	-	.	gene_id "intron_retention.1155"; transcript_id "intron_retention.1155"; gene_name "CUFF.1975"; flanks "17447843-,17448817^"; structure "0,1^2-"; splice_chain ",17447843^17448817-"; psi "0.500000";
chr3	juncbase	jcn_only_AD	186648623	186681573	.	-	.	gene_id "jcn_only_AD.1197"; transcript_id "jcn_only_AD.1197"; gene_name "CUFF.1975"; flanks "186648623-,186681573-"; structure "1^,2^"; splice_chain "186648623^,186648927^"; psi "0.810423";
chr3	juncbase	intron_retention	46963726	46963629	.	-	.	gene_id "intron_retention.1156"; transcript_id "intron_retention.1156"; gene_name "CUFF.1975"; flanks "46963726-,46963629^"; structure "0,1^2-"; splice_chain ",46963726^46963629-"; psi "0.375900";
chr1	juncbase	jcn_only_AA	156450626	156449138	.	-	.	gene_id "jcn_only_AA.990"; transcript_id "jcn_only_AA.990"; gene_name "CUFF.1975"; flanks "156450626^,156449138^"; structure "1-,2-"; splice_chain "156449588-,156449138-"; psi "0.791700";
chr14	juncbase	jcn_only_AA	58899175	58909424	.	-	.	gene_id "jcn_only_AA.991"; transcript_id "jcn_only_AA.991"; gene_name "CUFF.1975"; flanks "58899175^,58909424^"; structure "1-,2-"; splice_chain "58906788-,58909424-"; psi "0.907432";
chr4	juncbase	cassette	77977115	77969815	.	-	.	gene_id "cassette.858"; transcript_id "cassette.858"; gene_name "CUFF.1975"; flanks "77977115^,77969815-"; structure "0,1-2^"; splice_chain ",77976533-77976303^"; psi "0.912200";
chr22	juncbase	intron_retention	45204318	45204552	.	-	.	gene_id "intron_retention.1157"; transcript_id "intron_retention.1157"; gene_name "CUFF.1975"; flanks "45204318-,45204552^"; structure "0,1^2-"; splice_chain ",45204318^45204552-"; psi "0.555600";
chrX	juncbase	intron_retention	9000171	8998401	.	-	.	gene_id "intron_retention.1158"; transcript_id "intron_retention.1158"; gene_name "CUFF.1975"; flanks "9000171-,8998401^"; structure "0,1^2-"; splice_chain ",9000171^8998401-"; psi "0.252700";
chr8	juncbase	intron_retention	56675194	56663716	.	-	.	gene_id "intron_retention.1159"; transcript_id "intron_retention.1159"; gene_name "CUFF.1975"; flanks "56675194-,56663716^"; structure "0,1^2-"; splice_chain ",56675194^56663716-"; psi "0.810400";
chr17	juncbase	cassette	80426772	80436676	.	-	.	gene_id "cassette.859"; transcript_id "cassette.859"; gene_name "CUFF.1975"; flanks "80426772^,80436676-"; structure "0,1-2^"; splice_chain ",80430440-80430574^"; psi "0.505900";
chr17	juncbase	cassette	80426772	80436447	.	-	.	gene_id "cassette.860"; transcript_id "cassette.860"; gene_name "CUFF.1975"; flanks "80426772^,80436447-"; structure "0,1-2^"; splice_chain ",80430440-80430574^"; psi "0.505900";
chr5	juncbase	jcn_only_AA	178035377	178032383	.	-	.	gene_id "jcn_only_AA.992"; transcript_id "jcn_only_AA.992"; gene_name "CUFF.1975"; flanks "178035377^,178032383^"; structure "1-,2-"; splice_chain "178032866-,178032383-"; psi "0.886100";
chr11	juncbase	intron_retention	115267609	115267987	.	-	.	gene_id "intron_retention.1160"; transcript_id "intron_retention.1160"; gene_name "CUFF.1975"; flanks "115267609-,115267987^"; structure "0,1^2-"; splice_chain ",115267609^115267987-"; psi "0.859400";
chr13	juncbase	jcn_only_AA	25525535	25507674	.	-	.	gene_id "jcn_only_AA.993"; transcript_id "jcn_only_AA.993"; gene_name "CUFF.1975"; flanks "25525535^,25507674^"; structure "1-,2-"; splice_chain "25517159-,25507674-"; psi "0.097200";
chr12	juncbase	intron_retention	56708635	56705198	.	-	.	gene_id "intron_retention.1161"; transcript_id "intron_retention.1161"; gene_name "CUFF.1975"; flanks "56708635-,56705198^"; structure "0,1^2-"; splice_chain ",56708635^56705198-"; psi "0.722100";
chr2	juncbase	intron_retention	242434258	242432955	.	-	.	gene_id "intron_retention.1162"; transcript_id "intron_retention.1162"; gene_name "CUFF.1975"; flanks "242434258-,242432955^"; structure "0,1^2-"; splice_chain ",242434258^242432955-"; psi "0.475700";
chr3	juncbase	jcn_only_AA	141697362	141693033	.	-	.	gene_id "jcn_only_AA.994"; transcript_id "jcn_only_AA.994"; gene_name "CUFF.1975"; flanks "141697362^,141693033^"; structure "1-,2-"; splice_chain "141693036-,141693033-"; psi "0.597100";
chr18	juncbase	intron_retention	44486190	44483596	.	-	.	gene_id "intron_retention.1163"; transcript_id "intron_retention.1163"; gene_name "CUFF.1975"; flanks "44486190-,44483596^"; structure "0,1^2-"; splice_chain ",44486190^44483596-"; psi "0.800000";
chr5	juncbase	intron_retention	56532999	56542127	.	-	.	gene_id "intron_retention.1164"; transcript_id "intron_retention.1164"; gene_name "CUFF.1975"; flanks "56532999-,56542127^"; structure "0,1^2-"; splice_chain ",56532999^56542127-"; psi "0.507900";
chr7	juncbase	intron_retention	127255455	127255149	.	-	.	gene_id "intron_retention.1165"; transcript_id "intron_retention.1165"; gene_name "CUFF.1975"; flanks "127255455-,127255149^"; structure "0,1^2-"; splice_chain ",127255455^127255149-"; psi "0.285700";
chr17	juncbase	jcn_only_AA	1616997	1616219	.	-	.	gene_id "jcn_only_AA.995"; transcript_id "jcn_only_AA.995"; gene_name "CUFF.1975"; flanks "1616997^,1616219^"; structure "1-,2-"; splice_chain "1616349-,1616219-"; psi "0.086280";
chr17	juncbase	jcn_only_AA	1616997	1615693	.	-	.	gene_id "jcn_only_AA.996"; transcript_id "jcn_only_AA.996"; gene_name "CUFF.1975"; flanks "1616997^,1615693^"; structure "1-,2-"; splice_chain "1616349-,1615693-"; psi "0.361345";
chr17	juncbase	jcn_only_AA	1616997	1616189	.	-	.	gene_id "jcn_only_AA.997"; transcript_id "jcn_only_AA.997"; gene_name "CUFF.1975"; flanks "1616997^,1616189^"; structure "1-,2-"; splice_chain "1616349-,1616189-"; psi "0.615362";
chr17	juncbase	jcn_only_AA	1616997	1616198	.	-	.	gene_id "jcn_only_AA.998"; transcript_id "jcn_only_AA.998"; gene_name "CUFF.1975"; flanks "1616997^,1616198^"; structure "1-,2-"; splice_chain "1616349-,1616198-"; psi "0.817566";
chr9	juncbase	jcn_only_AA	135739052	135730312	.	-	.	gene_id "jcn_only_AA.999"; transcript_id "jcn_only_AA.999"; gene_name "CUFF.1975"; flanks "135739052^,135730312^"; structure "1-,2-"; splice_chain "135736984-,135730312-"; psi "0.094400";
chr1	juncbase	intron_retention	114424395	114423762	.	-	.	gene_id "intron_retention.1166"; transcript_id "intron_retention.1166"; gene_name "CUFF.1975"; flanks "114424395-,114423762^"; structure "0,1^2-"; splice_chain ",114424395^114423762-"; psi "0.044800";
chr2	juncbase	intron_retention	231927389	231931620	.	-	.	gene_id "intron_retention.1167"; transcript_id "intron_retention.1167"; gene_name "CUFF.1975"; flanks "231927389-,231931620^"; structure "0,1^2-"; splice_chain ",231927389^231931620-"; psi "0.170100";
chr19	juncbase	intron_retention	52909896	52918192	.	-	.	gene_id "intron_retention.1168"; transcript_id "intron_retention.1168"; gene_name "CUFF.1975"; flanks "52909896-,52918192^"; structure "0,1^2-"; splice_chain ",52909896^52918192-"; psi "0.750000";
chr10	juncbase	jcn_only_AA	69918384	69925240	.	-	.	gene_id "jcn_only_AA.1000"; transcript_id "jcn_only_AA.1000"; gene_name "CUFF.1975"; flanks "69918384^,69925240^"; structure "1-,2-"; splice_chain "69921486-,69925240-"; psi "0.107400";
chr11	juncbase	jcn_only_AA	107944224	107948903	.	-	.	gene_id "jcn_only_AA.1001"; transcript_id "jcn_only_AA.1001"; gene_name "CUFF.1975"; flanks "107944224^,107948903^"; structure "1-,2-"; splice_chain "107944527-,107948903-"; psi "0.125000";
chr2	juncbase	cassette	73215387	73195662	.	-	.	gene_id "cassette.861"; transcript_id "cassette.861"; gene_name "CUFF.1975"; flanks "73215387^,73195662-"; structure "0,1-2^"; splice_chain ",73198814-73198699^"; psi "0.964900";
chr4	juncbase	cassette	77172973	77184857	.	-	.	gene_id "cassette.862"; transcript_id "cassette.862"; gene_name "CUFF.1975"; flanks "77172973^,77184857-"; structure "0,1-2^"; splice_chain ",77177331-77177676^"; psi "0.055200";
chr2	juncbase	intron_retention	264084	263372	.	-	.	gene_id "intron_retention.1169"; transcript_id "intron_retention.1169"; gene_name "CUFF.1975"; flanks "264084-,263372^"; structure "0,1^2-"; splice_chain ",264084^263372-"; psi "0.355600";
chr22	juncbase	jcn_only_AA	21056997	21057294	.	-	.	gene_id "jcn_only_AA.1002"; transcript_id "jcn_only_AA.1002"; gene_name "CUFF.1975"; flanks "21056997^,21057294^"; structure "1-,2-"; splice_chain "21057118-,21057294-"; psi "0.961000";
chr6	juncbase	jcn_only_AD	112604394	112627531	.	-	.	gene_id "jcn_only_AD.1198"; transcript_id "jcn_only_AD.1198"; gene_name "CUFF.1975"; flanks "112604394-,112627531-"; structure "1^,2^"; splice_chain "112604394^,112604729^"; psi "0.333333";
chr6	juncbase	jcn_only_AD	112604369	112627531	.	-	.	gene_id "jcn_only_AD.1199"; transcript_id "jcn_only_AD.1199"; gene_name "CUFF.1975"; flanks "112604369-,112627531-"; structure "1^,2^"; splice_chain "112604369^,112604729^"; psi "0.647059";
chr6	juncbase	jcn_only_AD	112558117	112627531	.	-	.	gene_id "jcn_only_AD.1200"; transcript_id "jcn_only_AD.1200"; gene_name "CUFF.1975"; flanks "112558117-,112627531-"; structure "1^,2^"; splice_chain "112558117^,112604729^"; psi "0.448307";
chr11	juncbase	jcn_only_AA	61615756	61624483	.	-	.	gene_id "jcn_only_AA.1003"; transcript_id "jcn_only_AA.1003"; gene_name "CUFF.1975"; flanks "61615756^,61624483^"; structure "1-,2-"; splice_chain "61616153-,61624483-"; psi "0.632400";
chr14	juncbase	jcn_only_AA	75179636	75159031	.	-	.	gene_id "jcn_only_AA.1004"; transcript_id "jcn_only_AA.1004"; gene_name "CUFF.1975"; flanks "75179636^,75159031^"; structure "1-,2-"; splice_chain "75165559-,75159031-"; psi "0.854587";
chr14	juncbase	jcn_only_AA	75179636	75152363	.	-	.	gene_id "jcn_only_AA.1005"; transcript_id "jcn_only_AA.1005"; gene_name "CUFF.1975"; flanks "75179636^,75152363^"; structure "1-,2-"; splice_chain "75165559-,75152363-"; psi "0.358241";
chr10	juncbase	jcn_only_AA	73975965	73973089	.	-	.	gene_id "jcn_only_AA.1006"; transcript_id "jcn_only_AA.1006"; gene_name "CUFF.1975"; flanks "73975965^,73973089^"; structure "1-,2-"; splice_chain "73975612-,73973089-"; psi "0.797105";
chr10	juncbase	jcn_only_AA	73975965	73973035	.	-	.	gene_id "jcn_only_AA.1007"; transcript_id "jcn_only_AA.1007"; gene_name "CUFF.1975"; flanks "73975965^,73973035^"; structure "1-,2-"; splice_chain "73975612-,73973035-"; psi "0.835432";
chr10	juncbase	jcn_only_AA	73975965	73973109	.	-	.	gene_id "jcn_only_AA.1008"; transcript_id "jcn_only_AA.1008"; gene_name "CUFF.1975"; flanks "73975965^,73973109^"; structure "1-,2-"; splice_chain "73975612-,73973109-"; psi "0.568067";
chr17	juncbase	jcn_only_AA	61904874	61905498	.	-	.	gene_id "jcn_only_AA.1009"; transcript_id "jcn_only_AA.1009"; gene_name "CUFF.1975"; flanks "61904874^,61905498^"; structure "1-,2-"; splice_chain "61905479-,61905498-"; psi "0.891318";
chr5	juncbase	intron_retention	2747655	2746900	.	-	.	gene_id "intron_retention.1170"; transcript_id "intron_retention.1170"; gene_name "CUFF.1975"; flanks "2747655-,2746900^"; structure "0,1^2-"; splice_chain ",2747655^2746900-"; psi "0.125000";
chr19	juncbase	intron_retention	16655075	16654416	.	-	.	gene_id "intron_retention.1171"; transcript_id "intron_retention.1171"; gene_name "CUFF.1975"; flanks "16655075-,16654416^"; structure "0,1^2-"; splice_chain ",16655075^16654416-"; psi "0.043700";
chr15	juncbase	cassette	29385423	29390693	.	-	.	gene_id "cassette.863"; transcript_id "cassette.863"; gene_name "CUFF.1975"; flanks "29385423^,29390693-"; structure "0,1-2^"; splice_chain ",29386481-29386516^"; psi "0.513300";
chr2	juncbase	jcn_only_AA	27712482	27708370	.	-	.	gene_id "jcn_only_AA.1010"; transcript_id "jcn_only_AA.1010"; gene_name "CUFF.1975"; flanks "27712482^,27708370^"; structure "1-,2-"; splice_chain "27709109-,27708370-"; psi "0.984700";
chr17	juncbase	cassette	25969374	25972887	.	-	.	gene_id "cassette.864"; transcript_id "cassette.864"; gene_name "CUFF.1975"; flanks "25969374^,25972887-"; structure "0,1-2^"; splice_chain ",25970551-25970646^"; psi "0.555600";
chr17	juncbase	cassette	25969374	25972340	.	-	.	gene_id "cassette.865"; transcript_id "cassette.865"; gene_name "CUFF.1975"; flanks "25969374^,25972340-"; structure "0,1-2^"; splice_chain ",25970551-25970646^"; psi "0.555600";
chr15	juncbase	jcn_only_AD	40732164	40750650	.	-	.	gene_id "jcn_only_AD.1201"; transcript_id "jcn_only_AD.1201"; gene_name "CUFF.1975"; flanks "40732164-,40750650-"; structure "1^,2^"; splice_chain "40732164^,40733467^"; psi "0.444400";
chr19	juncbase	jcn_only_AD	1440240	1440348	.	-	.	gene_id "jcn_only_AD.1202"; transcript_id "jcn_only_AD.1202"; gene_name "CUFF.1975"; flanks "1440240-,1440348-"; structure "1^,2^"; splice_chain "1440240^,1440252^"; psi "0.124800";
chr11	juncbase	jcn_only_AA	61583898	61605250	.	-	.	gene_id "jcn_only_AA.1011"; transcript_id "jcn_only_AA.1011"; gene_name "CUFF.1975"; flanks "61583898^,61605250^"; structure "1-,2-"; splice_chain "61593504-,61605250-"; psi "0.229600";
chr6	juncbase	jcn_only_AA	128841404	128718833	.	-	.	gene_id "jcn_only_AA.1012"; transcript_id "jcn_only_AA.1012"; gene_name "CUFF.1975"; flanks "128841404^,128718833^"; structure "1-,2-"; splice_chain "128730477-,128718833-"; psi "0.846247";
chr20	juncbase	jcn_only_AD	61992529	61991051	.	-	.	gene_id "jcn_only_AD.1203"; transcript_id "jcn_only_AD.1203"; gene_name "CUFF.1975"; flanks "61992529-,61991051-"; structure "1^,2^"; splice_chain "61992529^,61992442^"; psi "0.935500";
chr14	juncbase	jcn_only_AD	75138111	75136829	.	-	.	gene_id "jcn_only_AD.1204"; transcript_id "jcn_only_AD.1204"; gene_name "CUFF.1975"; flanks "75138111-,75136829-"; structure "1^,2^"; splice_chain "75138111^,75137465^"; psi "0.234000";
chr3	juncbase	jcn_only_AD	107573977	107572901	.	-	.	gene_id "jcn_only_AD.1205"; transcript_id "jcn_only_AD.1205"; gene_name "CUFF.1975"; flanks "107573977-,107572901-"; structure "1^,2^"; splice_chain "107573977^,107573501^"; psi "0.964000";
chr4	juncbase	intron_retention	99407889	99405749	.	-	.	gene_id "intron_retention.1172"; transcript_id "intron_retention.1172"; gene_name "CUFF.1975"; flanks "99407889-,99405749^"; structure "0,1^2-"; splice_chain ",99407889^99405749-"; psi "0.180500";
chr2	juncbase	jcn_only_AA	229966	219001	.	-	.	gene_id "jcn_only_AA.1013"; transcript_id "jcn_only_AA.1013"; gene_name "CUFF.1975"; flanks "229966^,219001^"; structure "1-,2-"; splice_chain "224920-,219001-"; psi "0.596200";
chr15	juncbase	jcn_only_AD	90391825	90380954	.	-	.	gene_id "jcn_only_AD.1206"; transcript_id "jcn_only_AD.1206"; gene_name "CUFF.1975"; flanks "90391825-,90380954-"; structure "1^,2^"; splice_chain "90391825^,90381261^"; psi "0.414166";
chr15	juncbase	jcn_only_AD	90395593	90380954	.	-	.	gene_id "jcn_only_AD.1207"; transcript_id "jcn_only_AD.1207"; gene_name "CUFF.1975"; flanks "90395593-,90380954-"; structure "1^,2^"; splice_chain "90395593^,90381261^"; psi "0.403423";
chr15	juncbase	jcn_only_AD	90414707	90380954	.	-	.	gene_id "jcn_only_AD.1208"; transcript_id "jcn_only_AD.1208"; gene_name "CUFF.1975"; flanks "90414707-,90380954-"; structure "1^,2^"; splice_chain "90414707^,90381261^"; psi "0.947662";
chr6	juncbase	intron_retention	39853527	39851800	.	-	.	gene_id "intron_retention.1173"; transcript_id "intron_retention.1173"; gene_name "CUFF.1975"; flanks "39853527-,39851800^"; structure "0,1^2-"; splice_chain ",39853527^39851800-"; psi "0.782600";
chr11	juncbase	jcn_only_AD	36475656	36483892	.	-	.	gene_id "jcn_only_AD.1209"; transcript_id "jcn_only_AD.1209"; gene_name "CUFF.1975"; flanks "36475656-,36483892-"; structure "1^,2^"; splice_chain "36475656^,36476368^"; psi "0.430771";
chr11	juncbase	jcn_only_AA	118405070	118416834	.	-	.	gene_id "jcn_only_AA.1014"; transcript_id "jcn_only_AA.1014"; gene_name "CUFF.1975"; flanks "118405070^,118416834^"; structure "1-,2-"; splice_chain "118405222-,118416834-"; psi "0.121321";
chr11	juncbase	jcn_only_AA	118405070	118406223	.	-	.	gene_id "jcn_only_AA.1015"; transcript_id "jcn_only_AA.1015"; gene_name "CUFF.1975"; flanks "118405070^,118406223^"; structure "1-,2-"; splice_chain "118405222-,118406223-"; psi "0.121321";
chr12	juncbase	cassette	7090756	7088741	.	-	.	gene_id "cassette.866"; transcript_id "cassette.866"; gene_name "CUFF.1975"; flanks "7090756^,7088741-"; structure "0,1-2^"; splice_chain ",7090344-7090166^"; psi "0.802000";
chr16	juncbase	intron_retention	67969485	67969381	.	-	.	gene_id "intron_retention.1174"; transcript_id "intron_retention.1174"; gene_name "CUFF.1975"; flanks "67969485-,67969381^"; structure "0,1^2-"; splice_chain ",67969485^67969381-"; psi "0.218400";
chr2	juncbase	jcn_only_AD	109065736	109066089	.	-	.	gene_id "jcn_only_AD.1210"; transcript_id "jcn_only_AD.1210"; gene_name "CUFF.1975"; flanks "109065736-,109066089-"; structure "1^,2^"; splice_chain "109065736^,109065745^"; psi "0.766100";
chr17	juncbase	intron_retention	650785	650522	.	-	.	gene_id "intron_retention.1175"; transcript_id "intron_retention.1175"; gene_name "CUFF.1975"; flanks "650785-,650522^"; structure "0,1^2-"; splice_chain ",650785^650522-"; psi "0.681200";
chr16	juncbase	jcn_only_AD	63651597	63565208	.	-	.	gene_id "jcn_only_AD.1211"; transcript_id "jcn_only_AD.1211"; gene_name "CUFF.1975"; flanks "63651597-,63565208-"; structure "1^,2^"; splice_chain "63651597^,63566721^"; psi "0.922800";
chr12	juncbase	cassette	371955	352979	.	-	.	gene_id "cassette.867"; transcript_id "cassette.867"; gene_name "CUFF.1975"; flanks "371955^,352979-"; structure "0,1-2^"; splice_chain ",369223-369017^"; psi "0.843200";
chr11	juncbase	intron_retention	119056661	119056801	.	-	.	gene_id "intron_retention.1176"; transcript_id "intron_retention.1176"; gene_name "CUFF.1975"; flanks "119056661-,119056801^"; structure "0,1^2-"; splice_chain ",119056661^119056801-"; psi "0.066100";
chr16	juncbase	jcn_only_AA	23505624	23504842	.	-	.	gene_id "jcn_only_AA.1016"; transcript_id "jcn_only_AA.1016"; gene_name "CUFF.1975"; flanks "23505624^,23504842^"; structure "1-,2-"; splice_chain "23504908-,23504842-"; psi "0.103834";
chr16	juncbase	jcn_only_AA	23505624	23504779	.	-	.	gene_id "jcn_only_AA.1017"; transcript_id "jcn_only_AA.1017"; gene_name "CUFF.1975"; flanks "23505624^,23504779^"; structure "1-,2-"; splice_chain "23504908-,23504779-"; psi "0.354364";
chr19	juncbase	intron_retention	12917614	12917822	.	-	.	gene_id "intron_retention.1177"; transcript_id "intron_retention.1177"; gene_name "CUFF.1975"; flanks "12917614-,12917822^"; structure "0,1^2-"; splice_chain ",12917614^12917822-"; psi "0.007700";
chr19	juncbase	jcn_only_AA	52264483	52271898	.	-	.	gene_id "jcn_only_AA.1018"; transcript_id "jcn_only_AA.1018"; gene_name "CUFF.1975"; flanks "52264483^,52271898^"; structure "1-,2-"; splice_chain "52266615-,52271898-"; psi "0.929210";
chr11	juncbase	intron_retention	407062	406538	.	-	.	gene_id "intron_retention.1178"; transcript_id "intron_retention.1178"; gene_name "CUFF.1975"; flanks "407062-,406538^"; structure "0,1^2-"; splice_chain ",407062^406538-"; psi "0.429600";
chr15	juncbase	jcn_only_AD	66787668	66786890	.	-	.	gene_id "jcn_only_AD.1212"; transcript_id "jcn_only_AD.1212"; gene_name "CUFF.1975"; flanks "66787668-,66786890-"; structure "1^,2^"; splice_chain "66787668^,66787241^"; psi "0.826800";
chr19	juncbase	jcn_only_AD	52901153	52901620	.	-	.	gene_id "jcn_only_AD.1213"; transcript_id "jcn_only_AD.1213"; gene_name "CUFF.1975"; flanks "52901153-,52901620-"; structure "1^,2^"; splice_chain "52901153^,52901273^"; psi "0.773746";
chr19	juncbase	jcn_only_AD	52901157	52901620	.	-	.	gene_id "jcn_only_AD.1214"; transcript_id "jcn_only_AD.1214"; gene_name "CUFF.1975"; flanks "52901157-,52901620-"; structure "1^,2^"; splice_chain "52901157^,52901273^"; psi "0.513060";
chr22	juncbase	cassette	21057980	21058256	.	-	.	gene_id "cassette.868"; transcript_id "cassette.868"; gene_name "CUFF.1975"; flanks "21057980^,21058256-"; structure "0,1-2^"; splice_chain ",21058107-21058171^"; psi "0.757900";
chr3	juncbase	intron_retention	124953144	124951498	.	-	.	gene_id "intron_retention.1179"; transcript_id "intron_retention.1179"; gene_name "CUFF.1975"; flanks "124953144-,124951498^"; structure "0,1^2-"; splice_chain ",124953144^124951498-"; psi "0.203000";
chrX	juncbase	jcn_only_AD	47035985	47040614	.	-	.	gene_id "jcn_only_AD.1215"; transcript_id "jcn_only_AD.1215"; gene_name "CUFF.1975"; flanks "47035985-,47040614-"; structure "1^,2^"; splice_chain "47035985^,47039905^"; psi "0.104200";
chrX	juncbase	intron_retention	46387770	46382560	.	-	.	gene_id "intron_retention.1180"; transcript_id "intron_retention.1180"; gene_name "CUFF.1975"; flanks "46387770-,46382560^"; structure "0,1^2-"; splice_chain ",46387770^46382560-"; psi "0.738600";
chr22	juncbase	intron_retention	21057181	21057294	.	-	.	gene_id "intron_retention.1181"; transcript_id "intron_retention.1181"; gene_name "CUFF.1975"; flanks "21057181-,21057294^"; structure "0,1^2-"; splice_chain ",21057181^21057294-"; psi "0.810100";
chr17	juncbase	jcn_only_AA	79220685	79220040	.	-	.	gene_id "jcn_only_AA.1019"; transcript_id "jcn_only_AA.1019"; gene_name "CUFF.1975"; flanks "79220685^,79220040^"; structure "1-,2-"; splice_chain "79220473-,79220040-"; psi "0.158900";
chr9	juncbase	cassette	125054119	125084819	.	-	.	gene_id "cassette.869"; transcript_id "cassette.869"; gene_name "CUFF.1975"; flanks "125054119^,125084819-"; structure "0,1-2^"; splice_chain ",125075506-125075665^"; psi "0.880000";
chr21	juncbase	jcn_only_AD	47565331	47558837	.	-	.	gene_id "jcn_only_AD.1216"; transcript_id "jcn_only_AD.1216"; gene_name "CUFF.1975"; flanks "47565331-,47558837-"; structure "1^,2^"; splice_chain "47565331^,47562023^"; psi "0.945800";
chr10	juncbase	jcn_only_AA	78771725	78737396	.	-	.	gene_id "jcn_only_AA.1020"; transcript_id "jcn_only_AA.1020"; gene_name "CUFF.1975"; flanks "78771725^,78737396^"; structure "1-,2-"; splice_chain "78755466-,78737396-"; psi "0.407400";
chr2	juncbase	jcn_only_AA	3447662	3461392	.	-	.	gene_id "jcn_only_AA.1021"; transcript_id "jcn_only_AA.1021"; gene_name "CUFF.1975"; flanks "3447662^,3461392^"; structure "1-,2-"; splice_chain "3460921-,3461392-"; psi "0.988100";
chr15	juncbase	jcn_only_AA	55790405	55790008	.	-	.	gene_id "jcn_only_AA.1022"; transcript_id "jcn_only_AA.1022"; gene_name "CUFF.1975"; flanks "55790405^,55790008^"; structure "1-,2-"; splice_chain "55790057-,55790008-"; psi "0.083000";
chr19	juncbase	intron_retention	17448456	17448817	.	-	.	gene_id "intron_retention.1182"; transcript_id "intron_retention.1182"; gene_name "CUFF.1975"; flanks "17448456-,17448817^"; structure "0,1^2-"; splice_chain ",17448456^17448817-"; psi "0.896000";
chr19	juncbase	cassette	50305398	50306206	.	-	.	gene_id "cassette.870"; transcript_id "cassette.870"; gene_name "CUFF.1975"; flanks "50305398^,50306206-"; structure "0,1-2^"; splice_chain ",50305791-50305856^"; psi "0.077200";
chr2	juncbase	jcn_only_AA	27724096	27726381	.	-	.	gene_id "jcn_only_AA.1023"; transcript_id "jcn_only_AA.1023"; gene_name "CUFF.1975"; flanks "27724096^,27726381^"; structure "1-,2-"; splice_chain "27724557-,27726381-"; psi "0.870200";
chr2	juncbase	cassette	204354307	204335036	.	-	.	gene_id "cassette.871"; transcript_id "cassette.871"; gene_name "CUFF.1975"; flanks "204354307^,204335036-"; structure "0,1-2^"; splice_chain ",204341879-204341799^"; psi "0.774300";
chr2	juncbase	cassette	204354307	204326648	.	-	.	gene_id "cassette.872"; transcript_id "cassette.872"; gene_name "CUFF.1975"; flanks "204354307^,204326648-"; structure "0,1-2^"; splice_chain ",204341879-204341799^"; psi "0.774300";
chr17	juncbase	jcn_only_AD	61568729	61571283	.	-	.	gene_id "jcn_only_AD.1217"; transcript_id "jcn_only_AD.1217"; gene_name "CUFF.1975"; flanks "61568729-,61571283-"; structure "1^,2^"; splice_chain "61568729^,61571020^"; psi "0.168538";
chr17	juncbase	jcn_only_AD	61567389	61571283	.	-	.	gene_id "jcn_only_AD.1218"; transcript_id "jcn_only_AD.1218"; gene_name "CUFF.1975"; flanks "61567389-,61571283-"; structure "1^,2^"; splice_chain "61567389^,61571020^"; psi "0.168927";
chr10	juncbase	cassette	6265983	6268155	.	-	.	gene_id "cassette.873"; transcript_id "cassette.873"; gene_name "CUFF.1975"; flanks "6265983^,6268155-"; structure "0,1-2^"; splice_chain ",6266112-6266176^"; psi "0.986700";
chr1	juncbase	cassette	32542447	32557276	.	-	.	gene_id "cassette.874"; transcript_id "cassette.874"; gene_name "CUFF.1975"; flanks "32542447^,32557276-"; structure "0,1-2^"; splice_chain ",32542765-32542919^"; psi "0.860500";
chr1	juncbase	cassette	32541423	32557276	.	-	.	gene_id "cassette.875"; transcript_id "cassette.875"; gene_name "CUFF.1975"; flanks "32541423^,32557276-"; structure "0,1-2^"; splice_chain ",32542765-32542919^"; psi "0.860500";
chr11	juncbase	intron_retention	119229941	119229844	.	-	.	gene_id "intron_retention.1183"; transcript_id "intron_retention.1183"; gene_name "CUFF.1975"; flanks "119229941-,119229844^"; structure "0,1^2-"; splice_chain ",119229941^119229844-"; psi "0.093100";
chr7	juncbase	jcn_only_AA	102240307	102236554	.	-	.	gene_id "jcn_only_AA.1024"; transcript_id "jcn_only_AA.1024"; gene_name "CUFF.1975"; flanks "102240307^,102236554^"; structure "1-,2-"; splice_chain "102236576-,102236554-"; psi "0.977300";
chr17	juncbase	cassette	655373	651272	.	-	.	gene_id "cassette.876"; transcript_id "cassette.876"; gene_name "CUFF.1975"; flanks "655373^,651272-"; structure "0,1-2^"; splice_chain ",653149-653054^"; psi "0.656700";
chr7	juncbase	jcn_only_AD	102257072	102251589	.	-	.	gene_id "jcn_only_AD.1219"; transcript_id "jcn_only_AD.1219"; gene_name "CUFF.1975"; flanks "102257072-,102251589-"; structure "1^,2^"; splice_chain "102257072^,102256970^"; psi "0.500000";
chr19	juncbase	intron_retention	17449835	17449932	.	-	.	gene_id "intron_retention.1184"; transcript_id "intron_retention.1184"; gene_name "CUFF.1975"; flanks "17449835-,17449932^"; structure "0,1^2-"; splice_chain ",17449835^17449932-"; psi "0.406400";
chr18	juncbase	intron_retention	12028150	12028841	.	-	.	gene_id "intron_retention.1185"; transcript_id "intron_retention.1185"; gene_name "CUFF.1975"; flanks "12028150-,12028841^"; structure "0,1^2-"; splice_chain ",12028150^12028841-"; psi "0.412100";
chr7	juncbase	cassette	127253076	127251730	.	-	.	gene_id "cassette.877"; transcript_id "cassette.877"; gene_name "CUFF.1975"; flanks "127253076^,127251730-"; structure "0,1-2^"; splice_chain ",127252054-127251999^"; psi "0.958200";
chr17	juncbase	jcn_only_AA	79995507	79995417	.	-	.	gene_id "jcn_only_AA.1025"; transcript_id "jcn_only_AA.1025"; gene_name "CUFF.1975"; flanks "79995507^,79995417^"; structure "1-,2-"; splice_chain "79995423-,79995417-"; psi "0.472956";
chr17	juncbase	jcn_only_AA	79995507	79994889	.	-	.	gene_id "jcn_only_AA.1026"; transcript_id "jcn_only_AA.1026"; gene_name "CUFF.1975"; flanks "79995507^,79994889^"; structure "1-,2-"; splice_chain "79995423-,79994889-"; psi "0.306693";
chr19	juncbase	intron_retention	49302932	49300590	.	-	.	gene_id "intron_retention.1186"; transcript_id "intron_retention.1186"; gene_name "CUFF.1975"; flanks "49302932-,49300590^"; structure "0,1^2-"; splice_chain ",49302932^49300590-"; psi "0.328600";
chr5	juncbase	intron_retention	139865317	139866543	.	-	.	gene_id "intron_retention.1187"; transcript_id "intron_retention.1187"; gene_name "CUFF.1975"; flanks "139865317-,139866543^"; structure "0,1^2-"; splice_chain ",139865317^139866543-"; psi "0.734900";
chr3	juncbase	cassette	186756661	186760442	.	-	.	gene_id "cassette.878"; transcript_id "cassette.878"; gene_name "CUFF.1975"; flanks "186756661^,186760442-"; structure "0,1-2^"; splice_chain ",186759705-186759754^"; psi "0.393500";
chr3	juncbase	jcn_only_AD	28283303	28304782	.	-	.	gene_id "jcn_only_AD.1220"; transcript_id "jcn_only_AD.1220"; gene_name "CUFF.1975"; flanks "28283303-,28304782-"; structure "1^,2^"; splice_chain "28283303^,28283392^"; psi "0.765592";
chr17	juncbase	intron_retention	6352727	6353682	.	-	.	gene_id "intron_retention.1188"; transcript_id "intron_retention.1188"; gene_name "CUFF.1975"; flanks "6352727-,6353682^"; structure "0,1^2-"; splice_chain ",6352727^6353682-"; psi "0.440500";
chr12	juncbase	jcn_only_AD	48272751	48258960	.	-	.	gene_id "jcn_only_AD.1221"; transcript_id "jcn_only_AD.1221"; gene_name "CUFF.1975"; flanks "48272751-,48258960-"; structure "1^,2^"; splice_chain "48272751^,48272599^"; psi "0.797600";
chr2	juncbase	jcn_only_AA	680151	696541	.	-	.	gene_id "jcn_only_AA.1027"; transcript_id "jcn_only_AA.1027"; gene_name "CUFF.1975"; flanks "680151^,696541^"; structure "1-,2-"; splice_chain "681256-,696541-"; psi "0.422400";
chr3	juncbase	cassette	141868025	141724386	.	-	.	gene_id "cassette.879"; transcript_id "cassette.879"; gene_name "CUFF.1975"; flanks "141868025^,141724386-"; structure "0,1-2^"; splice_chain ",141820683-141820577^"; psi "0.671200";
chr11	juncbase	cassette	104915119	104912446	.	-	.	gene_id "cassette.880"; transcript_id "cassette.880"; gene_name "CUFF.1975"; flanks "104915119^,104912446-"; structure "0,1-2^"; splice_chain ",104914272-104914210^"; psi "0.378200";
chr5	juncbase	jcn_only_AD	127359827	127338514	.	-	.	gene_id "jcn_only_AD.1222"; transcript_id "jcn_only_AD.1222"; gene_name "CUFF.1975"; flanks "127359827-,127338514-"; structure "1^,2^"; splice_chain "127359827^,127339336^"; psi "0.562500";
chr10	juncbase	jcn_only_AD	73963185	73956747	.	-	.	gene_id "jcn_only_AD.1223"; transcript_id "jcn_only_AD.1223"; gene_name "CUFF.1975"; flanks "73963185-,73956747-"; structure "1^,2^"; splice_chain "73963185^,73958207^"; psi "0.795604";
chr10	juncbase	jcn_only_AD	73972945	73956747	.	-	.	gene_id "jcn_only_AD.1224"; transcript_id "jcn_only_AD.1224"; gene_name "CUFF.1975"; flanks "73972945-,73956747-"; structure "1^,2^"; splice_chain "73972945^,73958207^"; psi "0.185232";
chr8	juncbase	jcn_only_AA	144356972	144358173	.	-	.	gene_id "jcn_only_AA.1028"; transcript_id "jcn_only_AA.1028"; gene_name "CUFF.1975"; flanks "144356972^,144358173^"; structure "1-,2-"; splice_chain "144357365-,144358173-"; psi "0.189891";
chr8	juncbase	jcn_only_AA	144356972	144358067	.	-	.	gene_id "jcn_only_AA.1029"; transcript_id "jcn_only_AA.1029"; gene_name "CUFF.1975"; flanks "144356972^,144358067^"; structure "1-,2-"; splice_chain "144357365-,144358067-"; psi "0.721792";
chr11	juncbase	cassette	3239789	3242800	.	-	.	gene_id "cassette.881"; transcript_id "cassette.881"; gene_name "CUFF.1975"; flanks "3239789^,3242800-"; structure "0,1-2^"; splice_chain ",3241457-3241589^"; psi "0.414900";
chr3	juncbase	jcn_only_AA	107591815	107586272	.	-	.	gene_id "jcn_only_AA.1030"; transcript_id "jcn_only_AA.1030"; gene_name "CUFF.1975"; flanks "107591815^,107586272^"; structure "1-,2-"; splice_chain "107586424-,107586272-"; psi "0.637900";
chr3	juncbase	jcn_only_AA	107591815	107576049	.	-	.	gene_id "jcn_only_AA.1031"; transcript_id "jcn_only_AA.1031"; gene_name "CUFF.1975"; flanks "107591815^,107576049^"; structure "1-,2-"; splice_chain "107586424-,107576049-"; psi "0.800029";
chr18	juncbase	jcn_only_AD	14728513	14797660	.	-	.	gene_id "jcn_only_AD.1225"; transcript_id "jcn_only_AD.1225"; gene_name "CUFF.1975"; flanks "14728513-,14797660-"; structure "1^,2^"; splice_chain "14728513^,14796414^"; psi "0.096800";
chr7	juncbase	jcn_only_AD	107211711	107215633	.	-	.	gene_id "jcn_only_AD.1226"; transcript_id "jcn_only_AD.1226"; gene_name "CUFF.1975"; flanks "107211711-,107215633-"; structure "1^,2^"; splice_chain "107211711^,107214266^"; psi "0.980052";
chr14	juncbase	intron_retention	75130602	75130525	.	-	.	gene_id "intron_retention.1189"; transcript_id "intron_retention.1189"; gene_name "CUFF.1975"; flanks "75130602-,75130525^"; structure "0,1^2-"; splice_chain ",75130602^75130525-"; psi "0.760800";
chr17	juncbase	jcn_only_AA	66526142	66547225	.	-	.	gene_id "jcn_only_AA.1032"; transcript_id "jcn_only_AA.1032"; gene_name "CUFF.1975"; flanks "66526142^,66547225^"; structure "1-,2-"; splice_chain "66526418-,66547225-"; psi "0.069600";
chr11	juncbase	jcn_only_AA	61514823	61514595	.	-	.	gene_id "jcn_only_AA.1033"; transcript_id "jcn_only_AA.1033"; gene_name "CUFF.1975"; flanks "61514823^,61514595^"; structure "1-,2-"; splice_chain "61514613-,61514595-"; psi "0.754400";
chr2	juncbase	jcn_only_AD	175740516	175711685	.	-	.	gene_id "jcn_only_AD.1227"; transcript_id "jcn_only_AD.1227"; gene_name "CUFF.1975"; flanks "175740516-,175711685-"; structure "1^,2^"; splice_chain "175740516^,175712041^"; psi "0.204149";
chr2	juncbase	jcn_only_AD	175712447	175711685	.	-	.	gene_id "jcn_only_AD.1228"; transcript_id "jcn_only_AD.1228"; gene_name "CUFF.1975"; flanks "175712447-,175711685-"; structure "1^,2^"; splice_chain "175712447^,175712041^"; psi "0.539798";
chr2	juncbase	jcn_only_AA	110883214	110881640	.	-	.	gene_id "jcn_only_AA.1034"; transcript_id "jcn_only_AA.1034"; gene_name "CUFF.1975"; flanks "110883214^,110881640^"; structure "1-,2-"; splice_chain "110882900-,110881640-"; psi "0.939200";
chr4	juncbase	intron_retention	3949469	3948644	.	-	.	gene_id "intron_retention.1190"; transcript_id "intron_retention.1190"; gene_name "CUFF.1975"; flanks "3949469-,3948644^"; structure "0,1^2-"; splice_chain ",3949469^3948644-"; psi "0.517200";
chr3	juncbase	cassette	107572720	107568818	.	-	.	gene_id "cassette.882"; transcript_id "cassette.882"; gene_name "CUFF.1975"; flanks "107572720^,107568818-"; structure "0,1-2^"; splice_chain ",107569198-107569144^"; psi "0.524400";
chr10	juncbase	jcn_only_AA	35379107	35360267	.	-	.	gene_id "jcn_only_AA.1035"; transcript_id "jcn_only_AA.1035"; gene_name "CUFF.1975"; flanks "35379107^,35360267^"; structure "1-,2-"; splice_chain "35378929-,35360267-"; psi "0.605300";
chr2	juncbase	jcn_only_AD	3469466	3481466	.	-	.	gene_id "jcn_only_AD.1229"; transcript_id "jcn_only_AD.1229"; gene_name "CUFF.1975"; flanks "3469466-,3481466-"; structure "1^,2^"; splice_chain "3469466^,3476373^"; psi "0.715100";
chr11	juncbase	jcn_only_AA	67790229	67793477	.	-	.	gene_id "jcn_only_AA.1036"; transcript_id "jcn_only_AA.1036"; gene_name "CUFF.1975"; flanks "67790229^,67793477^"; structure "1-,2-"; splice_chain "67791676-,67793477-"; psi "0.942100";
chr15	juncbase	jcn_only_AD	44912388	44907764	.	-	.	gene_id "jcn_only_AD.1230"; transcript_id "jcn_only_AD.1230"; gene_name "CUFF.1975"; flanks "44912388-,44907764-"; structure "1^,2^"; splice_chain "44912388^,44912323^"; psi "0.724100";
chr1	juncbase	intron_retention	32827559	32827477	.	-	.	gene_id "intron_retention.1191"; transcript_id "intron_retention.1191"; gene_name "CUFF.1975"; flanks "32827559-,32827477^"; structure "0,1^2-"; splice_chain ",32827559^32827477-"; psi "0.506800";
chr4	juncbase	jcn_only_AD	83821230	83819215	.	-	.	gene_id "jcn_only_AD.1231"; transcript_id "jcn_only_AD.1231"; gene_name "CUFF.1975"; flanks "83821230-,83819215-"; structure "1^,2^"; splice_chain "83821230^,83820866^"; psi "0.395700";
chr6	juncbase	jcn_only_AA	126329891	126332399	.	-	.	gene_id "jcn_only_AA.1037"; transcript_id "jcn_only_AA.1037"; gene_name "CUFF.1975"; flanks "126329891^,126332399^"; structure "1-,2-"; splice_chain "126330481-,126332399-"; psi "0.625000";
chr22	juncbase	jcn_only_AD	21871614	21846383	.	-	.	gene_id "jcn_only_AD.1232"; transcript_id "jcn_only_AD.1232"; gene_name "CUFF.1975"; flanks "21871614-,21846383-"; structure "1^,2^"; splice_chain "21871614^,21868423^"; psi "0.269200";
chr7	juncbase	intron_retention	73098134	73105246	.	-	.	gene_id "intron_retention.1192"; transcript_id "intron_retention.1192"; gene_name "CUFF.1975"; flanks "73098134-,73105246^"; structure "0,1^2-"; splice_chain ",73098134^73105246-"; psi "0.768100";
chr10	juncbase	jcn_only_AA	73975965	73973035	.	-	.	gene_id "jcn_only_AA.1038"; transcript_id "jcn_only_AA.1038"; gene_name "CUFF.1975"; flanks "73975965^,73973035^"; structure "1-,2-"; splice_chain "73973089-,73973035-"; psi "0.563733";
chr22	juncbase	jcn_only_AA	47308084	47370186	.	-	.	gene_id "jcn_only_AA.1039"; transcript_id "jcn_only_AA.1039"; gene_name "CUFF.1975"; flanks "47308084^,47370186^"; structure "1-,2-"; splice_chain "47309230-,47370186-"; psi "0.827900";
chr16	juncbase	jcn_only_AA	56226528	56309843	.	-	.	gene_id "jcn_only_AA.1040"; transcript_id "jcn_only_AA.1040"; gene_name "CUFF.1975"; flanks "56226528^,56309843^"; structure "1-,2-"; splice_chain "56268925-,56309843-"; psi "0.332077";
chr20	juncbase	intron_retention	2843356	2843453	.	-	.	gene_id "intron_retention.1193"; transcript_id "intron_retention.1193"; gene_name "CUFF.1975"; flanks "2843356-,2843453^"; structure "0,1^2-"; splice_chain ",2843356^2843453-"; psi "0.250000";
chr8	juncbase	jcn_only_AD	81083660	80976828	.	-	.	gene_id "jcn_only_AD.1233"; transcript_id "jcn_only_AD.1233"; gene_name "CUFF.1975"; flanks "81083660-,80976828-"; structure "1^,2^"; splice_chain "81083660^,81070672^"; psi "0.549485";
chr8	juncbase	jcn_only_AD	81083442	80976828	.	-	.	gene_id "jcn_only_AD.1234"; transcript_id "jcn_only_AD.1234"; gene_name "CUFF.1975"; flanks "81083442-,80976828-"; structure "1^,2^"; splice_chain "81083442^,81070672^"; psi "0.437191";
chr8	juncbase	jcn_only_AD	81083256	80976828	.	-	.	gene_id "jcn_only_AD.1235"; transcript_id "jcn_only_AD.1235"; gene_name "CUFF.1975"; flanks "81083256-,80976828-"; structure "1^,2^"; splice_chain "81083256^,81070672^"; psi "0.162003";
chr8	juncbase	jcn_only_AD	81130704	80976828	.	-	.	gene_id "jcn_only_AD.1236"; transcript_id "jcn_only_AD.1236"; gene_name "CUFF.1975"; flanks "81130704-,80976828-"; structure "1^,2^"; splice_chain "81130704^,81070672^"; psi "0.437191";
chr2	juncbase	intron_retention	86400773	86398468	.	-	.	gene_id "intron_retention.1194"; transcript_id "intron_retention.1194"; gene_name "CUFF.1975"; flanks "86400773-,86398468^"; structure "0,1^2-"; splice_chain ",86400773^86398468-"; psi "0.782600";
chr5	juncbase	jcn_only_AA	139815842	139818079	.	-	.	gene_id "jcn_only_AA.1041"; transcript_id "jcn_only_AA.1041"; gene_name "CUFF.1975"; flanks "139815842^,139818079^"; structure "1-,2-"; splice_chain "139818046-,139818079-"; psi "0.613153";
chr5	juncbase	jcn_only_AA	139815842	139818088	.	-	.	gene_id "jcn_only_AA.1042"; transcript_id "jcn_only_AA.1042"; gene_name "CUFF.1975"; flanks "139815842^,139818088^"; structure "1-,2-"; splice_chain "139818046-,139818088-"; psi "0.446988";
chr3	juncbase	jcn_only_AA	33600799	33592887	.	-	.	gene_id "jcn_only_AA.1043"; transcript_id "jcn_only_AA.1043"; gene_name "CUFF.1975"; flanks "33600799^,33592887^"; structure "1-,2-"; splice_chain "33600667-,33592887-"; psi "0.328200";
chr8	juncbase	intron_retention	99057055	99055003	.	-	.	gene_id "intron_retention.1195"; transcript_id "intron_retention.1195"; gene_name "CUFF.1975"; flanks "99057055-,99055003^"; structure "0,1^2-"; splice_chain ",99057055^99055003-"; psi "0.907800";
chr12	juncbase	cassette	52963643	52962173	.	-	.	gene_id "cassette.883"; transcript_id "cassette.883"; gene_name "CUFF.1975"; flanks "52963643^,52962173-"; structure "0,1-2^"; splice_chain ",52963315-52963274^"; psi "0.123300";
chr1	juncbase	jcn_only_AD	156449378	156449138	.	-	.	gene_id "jcn_only_AD.1237"; transcript_id "jcn_only_AD.1237"; gene_name "CUFF.1975"; flanks "156449378-,156449138-"; structure "1^,2^"; splice_chain "156449378^,156449377^"; psi "0.993375";
chr1	juncbase	jcn_only_AD	156450626	156449138	.	-	.	gene_id "jcn_only_AD.1238"; transcript_id "jcn_only_AD.1238"; gene_name "CUFF.1975"; flanks "156450626-,156449138-"; structure "1^,2^"; splice_chain "156450626^,156449377^"; psi "0.974184";
chr3	juncbase	jcn_only_AD	125042232	125032500	.	-	.	gene_id "jcn_only_AD.1239"; transcript_id "jcn_only_AD.1239"; gene_name "CUFF.1975"; flanks "125042232-,125032500-"; structure "1^,2^"; splice_chain "125042232^,125042153^"; psi "0.198778";
chr2	juncbase	jcn_only_AD	61765627	61764722	.	-	.	gene_id "jcn_only_AD.1240"; transcript_id "jcn_only_AD.1240"; gene_name "CUFF.1975"; flanks "61765627-,61764722-"; structure "1^,2^"; splice_chain "61765627^,61765273^"; psi "0.512200";
chr7	juncbase	cassette	128850954	128851477	.	-	.	gene_id "cassette.884"; transcript_id "cassette.884"; gene_name "CUFF.1975"; flanks "128850954^,128851477-"; structure "0,1-2^"; splice_chain ",128851224-128851351^"; psi "0.887300";
chr9	juncbase	jcn_only_AA	130985139	130988314	.	-	.	gene_id "jcn_only_AA.1044"; transcript_id "jcn_only_AA.1044"; gene_name "CUFF.1975"; flanks "130985139^,130988314^"; structure "1-,2-"; splice_chain "130986530-,130988314-"; psi "0.423900";
chr22	juncbase	intron_retention	45244940	45255611	.	-	.	gene_id "intron_retention.1196"; transcript_id "intron_retention.1196"; gene_name "CUFF.1975"; flanks "45244940-,45255611^"; structure "0,1^2-"; splice_chain ",45244940^45255611-"; psi "0.124200";
chr12	juncbase	cassette	13349806	13366615	.	-	.	gene_id "cassette.885"; transcript_id "cassette.885"; gene_name "CUFF.1975"; flanks "13349806^,13366615-"; structure "0,1-2^"; splice_chain ",13366413-13366509^"; psi "0.982400";
chr19	juncbase	intron_retention	41351199	41350677	.	-	.	gene_id "intron_retention.1197"; transcript_id "intron_retention.1197"; gene_name "CUFF.1975"; flanks "41351199-,41350677^"; structure "0,1^2-"; splice_chain ",41351199^41350677-"; psi "0.647100";
chr10	juncbase	jcn_only_AD	124157490	124172436	.	-	.	gene_id "jcn_only_AD.1241"; transcript_id "jcn_only_AD.1241"; gene_name "CUFF.1975"; flanks "124157490-,124172436-"; structure "1^,2^"; splice_chain "124157490^,124166189^"; psi "0.117600";
chr12	juncbase	cassette	56709605	56708750	.	-	.	gene_id "cassette.886"; transcript_id "cassette.886"; gene_name "CUFF.1975"; flanks "56709605^,56708750-"; structure "0,1-2^"; splice_chain ",56709026-56708914^"; psi "0.951200";
chr15	juncbase	intron_retention	64444049	64444442	.	-	.	gene_id "intron_retention.1198"; transcript_id "intron_retention.1198"; gene_name "CUFF.1975"; flanks "64444049-,64444442^"; structure "0,1^2-"; splice_chain ",64444049^64444442-"; psi "0.159400";
chr6	juncbase	jcn_only_AA	46638965	46644384	.	-	.	gene_id "jcn_only_AA.1045"; transcript_id "jcn_only_AA.1045"; gene_name "CUFF.1975"; flanks "46638965^,46644384^"; structure "1-,2-"; splice_chain "46644120-,46644384-"; psi "0.760200";
chr8	juncbase	intron_retention	99057575	99055003	.	-	.	gene_id "intron_retention.1199"; transcript_id "intron_retention.1199"; gene_name "CUFF.1975"; flanks "99057575-,99055003^"; structure "0,1^2-"; splice_chain ",99057575^99055003-"; psi "0.500000";
chr1	juncbase	jcn_only_AA	2106752	2116022	.	-	.	gene_id "jcn_only_AA.1046"; transcript_id "jcn_only_AA.1046"; gene_name "CUFF.1975"; flanks "2106752^,2116022^"; structure "1-,2-"; splice_chain "2113271-,2116022-"; psi "0.892000";
chr2	juncbase	intron_retention	220095072	220096650	.	-	.	gene_id "intron_retention.1200"; transcript_id "intron_retention.1200"; gene_name "CUFF.1975"; flanks "220095072-,220096650^"; structure "0,1^2-"; splice_chain ",220095072^220096650-"; psi "0.575400";
chr8	juncbase	jcn_only_AD	120774655	120772978	.	-	.	gene_id "jcn_only_AD.1242"; transcript_id "jcn_only_AD.1242"; gene_name "CUFF.1975"; flanks "120774655-,120772978-"; structure "1^,2^"; splice_chain "120774655^,120773848^"; psi "0.753600";
chr21	juncbase	jcn_only_AA	15680940	15685265	.	-	.	gene_id "jcn_only_AA.1047"; transcript_id "jcn_only_AA.1047"; gene_name "CUFF.1975"; flanks "15680940^,15685265^"; structure "1-,2-"; splice_chain "15681293-,15685265-"; psi "0.876500";
chr9	juncbase	cassette	135753559	135742340	.	-	.	gene_id "cassette.887"; transcript_id "cassette.887"; gene_name "CUFF.1975"; flanks "135753559^,135742340-"; structure "0,1-2^"; splice_chain ",135750586-135750502^"; psi "0.592600";
chr17	juncbase	intron_retention	1943668	1943799	.	-	.	gene_id "intron_retention.1201"; transcript_id "intron_retention.1201"; gene_name "CUFF.1975"; flanks "1943668-,1943799^"; structure "0,1^2-"; splice_chain ",1943668^1943799-"; psi "0.182800";
chr22	juncbase	jcn_only_AA	25855482	25915890	.	-	.	gene_id "jcn_only_AA.1048"; transcript_id "jcn_only_AA.1048"; gene_name "CUFF.1975"; flanks "25855482^,25915890^"; structure "1-,2-"; splice_chain "25905150-,25915890-"; psi "0.596149";
chr16	juncbase	intron_retention	105882	106539	.	-	.	gene_id "intron_retention.1202"; transcript_id "intron_retention.1202"; gene_name "CUFF.1975"; flanks "105882-,106539^"; structure "0,1^2-"; splice_chain ",105882^106539-"; psi "0.124000";
chr20	juncbase	cassette	29978226	29966194	.	-	.	gene_id "cassette.888"; transcript_id "cassette.888"; gene_name "CUFF.1975"; flanks "29978226^,29966194-"; structure "0,1-2^"; splice_chain ",29976162-29976126^"; psi "0.423100";
chr1	juncbase	intron_retention	110212197	110213912	.	-	.	gene_id "intron_retention.1203"; transcript_id "intron_retention.1203"; gene_name "CUFF.1975"; flanks "110212197-,110213912^"; structure "0,1^2-"; splice_chain ",110212197^110213912-"; psi "0.916700";
chr6	juncbase	cassette	90327750	90333129	.	-	.	gene_id "cassette.889"; transcript_id "cassette.889"; gene_name "CUFF.1975"; flanks "90327750^,90333129-"; structure "0,1-2^"; splice_chain ",90331641-90331745^"; psi "0.947400";
chr8	juncbase	jcn_only_AA	29583672	29535520	.	-	.	gene_id "jcn_only_AA.1049"; transcript_id "jcn_only_AA.1049"; gene_name "CUFF.1975"; flanks "29583672^,29535520^"; structure "1-,2-"; splice_chain "29582535-,29535520-"; psi "0.703100";
chr7	juncbase	jcn_only_AD	193804	195554	.	-	.	gene_id "jcn_only_AD.1243"; transcript_id "jcn_only_AD.1243"; gene_name "CUFF.1975"; flanks "193804-,195554-"; structure "1^,2^"; splice_chain "193804^,195327^"; psi "0.184200";
chr6	juncbase	intron_retention	145157677	145160309	.	-	.	gene_id "intron_retention.1204"; transcript_id "intron_retention.1204"; gene_name "CUFF.1975"; flanks "145157677-,145160309^"; structure "0,1^2-"; splice_chain ",145157677^145160309-"; psi "0.187500";
chr17	juncbase	intron_retention	76988492	76988222	.	-	.	gene_id "intron_retention.1205"; transcript_id "intron_retention.1205"; gene_name "CUFF.1975"; flanks "76988492-,76988222^"; structure "0,1^2-"; splice_chain ",76988492^76988222-"; psi "0.890800";
chr13	juncbase	jcn_only_AD	33590451	33627904	.	-	.	gene_id "jcn_only_AD.1244"; transcript_id "jcn_only_AD.1244"; gene_name "CUFF.1975"; flanks "33590451-,33627904-"; structure "1^,2^"; splice_chain "33590451^,33591397^"; psi "0.935900";
chr16	juncbase	cassette	19592975	19612986	.	-	.	gene_id "cassette.890"; transcript_id "cassette.890"; gene_name "CUFF.1975"; flanks "19592975^,19612986-"; structure "0,1-2^"; splice_chain ",19603112-19603196^"; psi "0.931700";
chr16	juncbase	jcn_only_AA	105549	105794	.	-	.	gene_id "jcn_only_AA.1050"; transcript_id "jcn_only_AA.1050"; gene_name "CUFF.1975"; flanks "105549^,105794^"; structure "1-,2-"; splice_chain "105777-,105794-"; psi "0.052400";
chr9	juncbase	cassette	116750860	116764276	.	-	.	gene_id "cassette.891"; transcript_id "cassette.891"; gene_name "CUFF.1975"; flanks "116750860^,116764276-"; structure "0,1-2^"; splice_chain ",116760539-116760634^"; psi "0.033300";
chr8	juncbase	jcn_only_AD	81083660	80976828	.	-	.	gene_id "jcn_only_AD.1245"; transcript_id "jcn_only_AD.1245"; gene_name "CUFF.1975"; flanks "81083660-,80976828-"; structure "1^,2^"; splice_chain "81083660^,81083256^"; psi "0.863184";
chr8	juncbase	jcn_only_AD	81083442	80976828	.	-	.	gene_id "jcn_only_AD.1246"; transcript_id "jcn_only_AD.1246"; gene_name "CUFF.1975"; flanks "81083442-,80976828-"; structure "1^,2^"; splice_chain "81083442^,81083256^"; psi "0.800725";
chr8	juncbase	jcn_only_AD	81130704	80976828	.	-	.	gene_id "jcn_only_AD.1247"; transcript_id "jcn_only_AD.1247"; gene_name "CUFF.1975"; flanks "81130704-,80976828-"; structure "1^,2^"; splice_chain "81130704^,81083256^"; psi "0.800725";
chr10	juncbase	intron_retention	30302412	30301979	.	-	.	gene_id "intron_retention.1206"; transcript_id "intron_retention.1206"; gene_name "CUFF.1975"; flanks "30302412-,30301979^"; structure "0,1^2-"; splice_chain ",30302412^30301979-"; psi "0.437500";
chr12	juncbase	cassette	4654478	4655475	.	-	.	gene_id "cassette.892"; transcript_id "cassette.892"; gene_name "CUFF.1975"; flanks "4654478^,4655475-"; structure "0,1-2^"; splice_chain ",4654948-4654998^"; psi "0.151300";
chr12	juncbase	cassette	4653070	4655475	.	-	.	gene_id "cassette.893"; transcript_id "cassette.893"; gene_name "CUFF.1975"; flanks "4653070^,4655475-"; structure "0,1-2^"; splice_chain ",4654948-4654998^"; psi "0.151300";
chr15	juncbase	jcn_only_AD	45467417	45460331	.	-	.	gene_id "jcn_only_AD.1248"; transcript_id "jcn_only_AD.1248"; gene_name "CUFF.1975"; flanks "45467417-,45460331-"; structure "1^,2^"; splice_chain "45467417^,45464081^"; psi "0.054300";
chr11	juncbase	jcn_only_AA	117070148	117073718	.	-	.	gene_id "jcn_only_AA.1051"; transcript_id "jcn_only_AA.1051"; gene_name "CUFF.1975"; flanks "117070148^,117073718^"; structure "1-,2-"; splice_chain "117070349-,117073718-"; psi "0.368400";
chr22	juncbase	intron_retention	51015286	51015022	.	-	.	gene_id "intron_retention.1207"; transcript_id "intron_retention.1207"; gene_name "CUFF.1975"; flanks "51015286-,51015022^"; structure "0,1^2-"; splice_chain ",51015286^51015022-"; psi "0.788100";
chr10	juncbase	jcn_only_AD	74095592	74094375	.	-	.	gene_id "jcn_only_AD.1249"; transcript_id "jcn_only_AD.1249"; gene_name "CUFF.1975"; flanks "74095592-,74094375-"; structure "1^,2^"; splice_chain "74095592^,74095538^"; psi "0.080600";
chr2	juncbase	jcn_only_AD	31414265	31412344	.	-	.	gene_id "jcn_only_AD.1250"; transcript_id "jcn_only_AD.1250"; gene_name "CUFF.1975"; flanks "31414265-,31412344-"; structure "1^,2^"; splice_chain "31414265^,31412533^"; psi "0.872700";
chr11	juncbase	jcn_only_AD	119252183	119230944	.	-	.	gene_id "jcn_only_AD.1251"; transcript_id "jcn_only_AD.1251"; gene_name "CUFF.1975"; flanks "119252183-,119230944-"; structure "1^,2^"; splice_chain "119252183^,119243417^"; psi "0.630491";
chr15	juncbase	cassette	44862723	44859790	.	-	.	gene_id "cassette.894"; transcript_id "cassette.894"; gene_name "CUFF.1975"; flanks "44862723^,44859790-"; structure "0,1-2^"; splice_chain ",44861703-44861596^"; psi "0.704100";
chr2	juncbase	intron_retention	220097405	220097801	.	-	.	gene_id "intron_retention.1208"; transcript_id "intron_retention.1208"; gene_name "CUFF.1975"; flanks "220097405-,220097801^"; structure "0,1^2-"; splice_chain ",220097405^220097801-"; psi "0.272100";
chr4	juncbase	cassette	37841881	37847254	.	-	.	gene_id "cassette.895"; transcript_id "cassette.895"; gene_name "CUFF.1975"; flanks "37841881^,37847254-"; structure "0,1-2^"; splice_chain ",37845985-37846174^"; psi "0.647400";
chr5	juncbase	cassette	178039417	178032383	.	-	.	gene_id "cassette.896"; transcript_id "cassette.896"; gene_name "CUFF.1975"; flanks "178039417^,178032383-"; structure "0,1-2^"; splice_chain ",178035459-178035377^"; psi "0.573900";
chr2	juncbase	jcn_only_AA	169828357	169826725	.	-	.	gene_id "jcn_only_AA.1052"; transcript_id "jcn_only_AA.1052"; gene_name "CUFF.1975"; flanks "169828357^,169826725^"; structure "1-,2-"; splice_chain "169826866-,169826725-"; psi "0.060600";
chr3	juncbase	jcn_only_AD	73610602	73453546	.	-	.	gene_id "jcn_only_AD.1252"; transcript_id "jcn_only_AD.1252"; gene_name "CUFF.1975"; flanks "73610602-,73453546-"; structure "1^,2^"; splice_chain "73610602^,73523606^"; psi "0.400943";
chr3	juncbase	jcn_only_AD	73651505	73453546	.	-	.	gene_id "jcn_only_AD.1253"; transcript_id "jcn_only_AD.1253"; gene_name "CUFF.1975"; flanks "73651505-,73453546-"; structure "1^,2^"; splice_chain "73651505^,73523606^"; psi "0.217659";
chr3	juncbase	jcn_only_AD	73605851	73453546	.	-	.	gene_id "jcn_only_AD.1254"; transcript_id "jcn_only_AD.1254"; gene_name "CUFF.1975"; flanks "73605851-,73453546-"; structure "1^,2^"; splice_chain "73605851^,73523606^"; psi "0.723713";
chr3	juncbase	jcn_only_AD	73618302	73453546	.	-	.	gene_id "jcn_only_AD.1255"; transcript_id "jcn_only_AD.1255"; gene_name "CUFF.1975"; flanks "73618302-,73453546-"; structure "1^,2^"; splice_chain "73618302^,73523606^"; psi "0.591202";
chr22	juncbase	intron_retention	51020987	51020786	.	-	.	gene_id "intron_retention.1209"; transcript_id "intron_retention.1209"; gene_name "CUFF.1975"; flanks "51020987-,51020786^"; structure "0,1^2-"; splice_chain ",51020987^51020786-"; psi "0.730700";
chr18	juncbase	cassette	163453	180236	.	-	.	gene_id "cassette.897"; transcript_id "cassette.897"; gene_name "CUFF.1975"; flanks "163453^,180236-"; structure "0,1-2^"; splice_chain ",178901-179037^"; psi "0.569700";
chr1	juncbase	intron_retention	32829676	32827652	.	-	.	gene_id "intron_retention.1210"; transcript_id "intron_retention.1210"; gene_name "CUFF.1975"; flanks "32829676-,32827652^"; structure "0,1^2-"; splice_chain ",32829676^32827652-"; psi "0.576100";
chr19	juncbase	jcn_only_AA	7075116	7075687	.	-	.	gene_id "jcn_only_AA.1053"; transcript_id "jcn_only_AA.1053"; gene_name "CUFF.1975"; flanks "7075116^,7075687^"; structure "1-,2-"; splice_chain "7075666-,7075687-"; psi "0.290300";
chr19	juncbase	cassette	49299685	49298721	.	-	.	gene_id "cassette.898"; transcript_id "cassette.898"; gene_name "CUFF.1975"; flanks "49299685^,49298721-"; structure "0,1-2^"; splice_chain ",49299586-49299404^"; psi "0.282500";
chr10	juncbase	cassette	46158990	46147481	.	-	.	gene_id "cassette.899"; transcript_id "cassette.899"; gene_name "CUFF.1975"; flanks "46158990^,46147481-"; structure "0,1-2^"; splice_chain ",46148507-46148432^"; psi "0.827600";
chr14	juncbase	jcn_only_AA	76243193	76245922	.	-	.	gene_id "jcn_only_AA.1054"; transcript_id "jcn_only_AA.1054"; gene_name "CUFF.1975"; flanks "76243193^,76245922^"; structure "1-,2-"; splice_chain "76245918-,76245922-"; psi "0.300000";
chr6	juncbase	jcn_only_AA	31939706	31938924	.	-	.	gene_id "jcn_only_AA.1055"; transcript_id "jcn_only_AA.1055"; gene_name "CUFF.1975"; flanks "31939706^,31938924^"; structure "1-,2-"; splice_chain "31939458-,31938924-"; psi "0.275943";
chr6	juncbase	jcn_only_AA	31939706	31939358	.	-	.	gene_id "jcn_only_AA.1056"; transcript_id "jcn_only_AA.1056"; gene_name "CUFF.1975"; flanks "31939706^,31939358^"; structure "1-,2-"; splice_chain "31939458-,31939358-"; psi "0.222128";
chr12	juncbase	jcn_only_AA	26205535	26208212	.	-	.	gene_id "jcn_only_AA.1057"; transcript_id "jcn_only_AA.1057"; gene_name "CUFF.1975"; flanks "26205535^,26208212^"; structure "1-,2-"; splice_chain "26208169-,26208212-"; psi "0.246200";
chr2	juncbase	jcn_only_AD	61763845	61761038	.	-	.	gene_id "jcn_only_AD.1256"; transcript_id "jcn_only_AD.1256"; gene_name "CUFF.1975"; flanks "61763845-,61761038-"; structure "1^,2^"; splice_chain "61763845^,61761693^"; psi "0.219835";
chr2	juncbase	jcn_only_AD	61763337	61761038	.	-	.	gene_id "jcn_only_AD.1257"; transcript_id "jcn_only_AD.1257"; gene_name "CUFF.1975"; flanks "61763337-,61761038-"; structure "1^,2^"; splice_chain "61763337^,61761693^"; psi "0.418002";
chr2	juncbase	jcn_only_AD	61764697	61761038	.	-	.	gene_id "jcn_only_AD.1258"; transcript_id "jcn_only_AD.1258"; gene_name "CUFF.1975"; flanks "61764697-,61761038-"; structure "1^,2^"; splice_chain "61764697^,61761693^"; psi "0.609433";
chr2	juncbase	jcn_only_AD	61764154	61761038	.	-	.	gene_id "jcn_only_AD.1259"; transcript_id "jcn_only_AD.1259"; gene_name "CUFF.1975"; flanks "61764154-,61761038-"; structure "1^,2^"; splice_chain "61764154^,61761693^"; psi "0.830490";
chr2	juncbase	jcn_only_AD	61765627	61761038	.	-	.	gene_id "jcn_only_AD.1260"; transcript_id "jcn_only_AD.1260"; gene_name "CUFF.1975"; flanks "61765627-,61761038-"; structure "1^,2^"; splice_chain "61765627^,61761693^"; psi "0.338936";
chr5	juncbase	intron_retention	134181902	134182353	.	-	.	gene_id "intron_retention.1211"; transcript_id "intron_retention.1211"; gene_name "CUFF.1975"; flanks "134181902-,134182353^"; structure "0,1^2-"; splice_chain ",134181902^134182353-"; psi "0.170400";
chr3	juncbase	intron_retention	28283303	28357824	.	-	.	gene_id "intron_retention.1212"; transcript_id "intron_retention.1212"; gene_name "CUFF.1975"; flanks "28283303-,28357824^"; structure "0,1^2-"; splice_chain ",28283303^28357824-"; psi "0.405400";
chr1	juncbase	jcn_only_AA	16382018	16382173	.	-	.	gene_id "jcn_only_AA.1058"; transcript_id "jcn_only_AA.1058"; gene_name "CUFF.1975"; flanks "16382018^,16382173^"; structure "1-,2-"; splice_chain "16382170-,16382173-"; psi "0.929000";
chr16	juncbase	intron_retention	23505624	23504779	.	-	.	gene_id "intron_retention.1213"; transcript_id "intron_retention.1213"; gene_name "CUFF.1975"; flanks "23505624-,23504779^"; structure "0,1^2-"; splice_chain ",23505624^23504779-"; psi "0.411700";
chr9	juncbase	jcn_only_AD	46687554	46686829	.	-	.	gene_id "jcn_only_AD.1261"; transcript_id "jcn_only_AD.1261"; gene_name "CUFF.1975"; flanks "46687554-,46686829-"; structure "1^,2^"; splice_chain "46687554^,46687373^"; psi "0.936700";
chr7	juncbase	jcn_only_AD	75070232	75068502	.	-	.	gene_id "jcn_only_AD.1262"; transcript_id "jcn_only_AD.1262"; gene_name "CUFF.1975"; flanks "75070232-,75068502-"; structure "1^,2^"; splice_chain "75070232^,75069884^"; psi "0.021100";
chr1	juncbase	jcn_only_AA	106012918	106148565	.	-	.	gene_id "jcn_only_AA.1059"; transcript_id "jcn_only_AA.1059"; gene_name "CUFF.1975"; flanks "106012918^,106148565^"; structure "1-,2-"; splice_chain "106148551-,106148565-"; psi "0.818200";
chr11	juncbase	intron_retention	61595696	61595967	.	-	.	gene_id "intron_retention.1214"; transcript_id "intron_retention.1214"; gene_name "CUFF.1975"; flanks "61595696-,61595967^"; structure "0,1^2-"; splice_chain ",61595696^61595967-"; psi "0.516100";
chr4	juncbase	intron_retention	107845702	107845361	.	-	.	gene_id "intron_retention.1215"; transcript_id "intron_retention.1215"; gene_name "CUFF.1975"; flanks "107845702-,107845361^"; structure "0,1^2-"; splice_chain ",107845702^107845361-"; psi "0.031000";
chr22	juncbase	jcn_only_AD	51018486	51018231	.	-	.	gene_id "jcn_only_AD.1263"; transcript_id "jcn_only_AD.1263"; gene_name "CUFF.1975"; flanks "51018486-,51018231-"; structure "1^,2^"; splice_chain "51018486^,51018403^"; psi "0.940900";
chr2	juncbase	jcn_only_AA	283111	280149	.	-	.	gene_id "jcn_only_AA.1060"; transcript_id "jcn_only_AA.1060"; gene_name "CUFF.1975"; flanks "283111^,280149^"; structure "1-,2-"; splice_chain "280152-,280149-"; psi "0.767000";
chr11	juncbase	cassette	118403176	118404572	.	-	.	gene_id "cassette.900"; transcript_id "cassette.900"; gene_name "CUFF.1975"; flanks "118403176^,118404572-"; structure "0,1-2^"; splice_chain ",118404135-118404266^"; psi "0.364200";
chr11	juncbase	cassette	118403922	118404572	.	-	.	gene_id "cassette.901"; transcript_id "cassette.901"; gene_name "CUFF.1975"; flanks "118403922^,118404572-"; structure "0,1-2^"; splice_chain ",118404135-118404266^"; psi "0.364200";
chr8	juncbase	intron_retention	99057171	99055003	.	-	.	gene_id "intron_retention.1216"; transcript_id "intron_retention.1216"; gene_name "CUFF.1975"; flanks "99057171-,99055003^"; structure "0,1^2-"; splice_chain ",99057171^99055003-"; psi "0.676700";
chr17	juncbase	jcn_only_AD	15584179	15580594	.	-	.	gene_id "jcn_only_AD.1264"; transcript_id "jcn_only_AD.1264"; gene_name "CUFF.1975"; flanks "15584179-,15580594-"; structure "1^,2^"; splice_chain "15584179^,15580889^"; psi "0.611700";
chr11	juncbase	intron_retention	829183	829360	.	-	.	gene_id "intron_retention.1217"; transcript_id "intron_retention.1217"; gene_name "CUFF.1975"; flanks "829183-,829360^"; structure "0,1^2-"; splice_chain ",829183^829360-"; psi "0.721900";
chr16	juncbase	intron_retention	3115495	3115782	.	-	.	gene_id "intron_retention.1218"; transcript_id "intron_retention.1218"; gene_name "CUFF.1975"; flanks "3115495-,3115782^"; structure "0,1^2-"; splice_chain ",3115495^3115782-"; psi "0.519400";
chr17	juncbase	cassette	61566152	61568315	.	-	.	gene_id "cassette.902"; transcript_id "cassette.902"; gene_name "CUFF.1975"; flanks "61566152^,61568315-"; structure "0,1-2^"; splice_chain ",61566302-61566493^"; psi "0.903400";
chr8	juncbase	jcn_only_AA	71564129	71564770	.	-	.	gene_id "jcn_only_AA.1061"; transcript_id "jcn_only_AA.1061"; gene_name "CUFF.1975"; flanks "71564129^,71564770^"; structure "1-,2-"; splice_chain "71564746-,71564770-"; psi "0.629300";
chr19	juncbase	intron_retention	5896464	5894865	.	-	.	gene_id "intron_retention.1219"; transcript_id "intron_retention.1219"; gene_name "CUFF.1975"; flanks "5896464-,5894865^"; structure "0,1^2-"; splice_chain ",5896464^5894865-"; psi "0.018600";
chr12	juncbase	intron_retention	53861627	53862564	.	-	.	gene_id "intron_retention.1220"; transcript_id "intron_retention.1220"; gene_name "CUFF.1975"; flanks "53861627-,53862564^"; structure "0,1^2-"; splice_chain ",53861627^53862564-"; psi "0.494100";
chr1	juncbase	intron_retention	155180418	155181918	.	-	.	gene_id "intron_retention.1221"; transcript_id "intron_retention.1221"; gene_name "CUFF.1975"; flanks "155180418-,155181918^"; structure "0,1^2-"; splice_chain ",155180418^155181918-"; psi "0.143600";
chr12	juncbase	jcn_only_AA	333158	332400	.	-	.	gene_id "jcn_only_AA.1062"; transcript_id "jcn_only_AA.1062"; gene_name "CUFF.1975"; flanks "333158^,332400^"; structure "1-,2-"; splice_chain "333011-,332400-"; psi "0.893900";
chr11	juncbase	jcn_only_AD	118533497	118532438	.	-	.	gene_id "jcn_only_AD.1265"; transcript_id "jcn_only_AD.1265"; gene_name "CUFF.1975"; flanks "118533497-,118532438-"; structure "1^,2^"; splice_chain "118533497^,118532599^"; psi "0.911000";
chr19	juncbase	intron_retention	52901157	52901707	.	-	.	gene_id "intron_retention.1222"; transcript_id "intron_retention.1222"; gene_name "CUFF.1975"; flanks "52901157-,52901707^"; structure "0,1^2-"; splice_chain ",52901157^52901707-"; psi "0.810300";
chr2	juncbase	intron_retention	175243651	175216453	.	-	.	gene_id "intron_retention.1223"; transcript_id "intron_retention.1223"; gene_name "CUFF.1975"; flanks "175243651-,175216453^"; structure "0,1^2-"; splice_chain ",175243651^175216453-"; psi "0.973000";
chr1	juncbase	jcn_only_AD	54356967	54359987	.	-	.	gene_id "jcn_only_AD.1266"; transcript_id "jcn_only_AD.1266"; gene_name "CUFF.1975"; flanks "54356967-,54359987-"; structure "1^,2^"; splice_chain "54356967^,54357949^"; psi "0.828000";
chr11	juncbase	jcn_only_AA	67786362	67786639	.	-	.	gene_id "jcn_only_AA.1063"; transcript_id "jcn_only_AA.1063"; gene_name "CUFF.1975"; flanks "67786362^,67786639^"; structure "1-,2-"; splice_chain "67786535-,67786639-"; psi "0.968400";
chr8	juncbase	jcn_only_AD	126963430	126958426	.	-	.	gene_id "jcn_only_AD.1267"; transcript_id "jcn_only_AD.1267"; gene_name "CUFF.1975"; flanks "126963430-,126958426-"; structure "1^,2^"; splice_chain "126963430^,126963158^"; psi "0.176700";
chrX	juncbase	jcn_only_AD	153607897	153608050	.	-	.	gene_id "jcn_only_AD.1268"; transcript_id "jcn_only_AD.1268"; gene_name "CUFF.1975"; flanks "153607897-,153608050-"; structure "1^,2^"; splice_chain "153607897^,153607926^"; psi "0.311300";
chr1	juncbase	intron_retention	158589012	158587846	.	-	.	gene_id "intron_retention.1224"; transcript_id "intron_retention.1224"; gene_name "CUFF.1975"; flanks "158589012-,158587846^"; structure "0,1^2-"; splice_chain ",158589012^158587846-"; psi "0.800000";
chr7	juncbase	jcn_only_AA	34724296	34818107	.	-	.	gene_id "jcn_only_AA.1064"; transcript_id "jcn_only_AA.1064"; gene_name "CUFF.1975"; flanks "34724296^,34818107^"; structure "1-,2-"; splice_chain "34818074-,34818107-"; psi "0.281716";
chr11	juncbase	cassette	118550248	118533905	.	-	.	gene_id "cassette.903"; transcript_id "cassette.903"; gene_name "CUFF.1975"; flanks "118550248^,118533905-"; structure "0,1-2^"; splice_chain ",118534148-118534048^"; psi "0.104300";
chr10	juncbase	jcn_only_AD	73970490	73963282	.	-	.	gene_id "jcn_only_AD.1269"; transcript_id "jcn_only_AD.1269"; gene_name "CUFF.1975"; flanks "73970490-,73963282-"; structure "1^,2^"; splice_chain "73970490^,73964180^"; psi "0.714300";
chr14	juncbase	intron_retention	59941446	59941244	.	-	.	gene_id "intron_retention.1225"; transcript_id "intron_retention.1225"; gene_name "CUFF.1975"; flanks "59941446-,59941244^"; structure "0,1^2-"; splice_chain ",59941446^59941244-"; psi "0.293200";
chr16	juncbase	intron_retention	67218805	67218713	.	-	.	gene_id "intron_retention.1226"; transcript_id "intron_retention.1226"; gene_name "CUFF.1975"; flanks "67218805-,67218713^"; structure "0,1^2-"; splice_chain ",67218805^67218713-"; psi "0.589100";
chr10	juncbase	cassette	5120169	5138602	.	-	.	gene_id "cassette.904"; transcript_id "cassette.904"; gene_name "CUFF.1975"; flanks "5120169^,5138602-"; structure "0,1-2^"; splice_chain ",5122938-5123093^"; psi "0.284900";
chr16	juncbase	jcn_only_AD	23530908	23507099	.	-	.	gene_id "jcn_only_AD.1270"; transcript_id "jcn_only_AD.1270"; gene_name "CUFF.1975"; flanks "23530908-,23507099-"; structure "1^,2^"; splice_chain "23530908^,23521642^"; psi "0.306100";
chr11	juncbase	intron_retention	67764243	67758833	.	-	.	gene_id "intron_retention.1227"; transcript_id "intron_retention.1227"; gene_name "CUFF.1975"; flanks "67764243-,67758833^"; structure "0,1^2-"; splice_chain ",67764243^67758833-"; psi "0.358000";
chr9	juncbase	cassette	116770834	116778975	.	-	.	gene_id "cassette.905"; transcript_id "cassette.905"; gene_name "CUFF.1975"; flanks "116770834^,116778975-"; structure "0,1-2^"; splice_chain ",116778393-116778452^"; psi "0.960400";
chr7	juncbase	intron_retention	107591671	107580803	.	-	.	gene_id "intron_retention.1228"; transcript_id "intron_retention.1228"; gene_name "CUFF.1975"; flanks "107591671-,107580803^"; structure "0,1^2-"; splice_chain ",107591671^107580803-"; psi "0.581100";
chr15	juncbase	intron_retention	44865745	44865018	.	-	.	gene_id "intron_retention.1229"; transcript_id "intron_retention.1229"; gene_name "CUFF.1975"; flanks "44865745-,44865018^"; structure "0,1^2-"; splice_chain ",44865745^44865018-"; psi "0.414100";
chr19	juncbase	intron_retention	12917893	12918020	.	-	.	gene_id "intron_retention.1230"; transcript_id "intron_retention.1230"; gene_name "CUFF.1975"; flanks "12917893-,12918020^"; structure "0,1^2-"; splice_chain ",12917893^12918020-"; psi "0.003100";
chr11	juncbase	jcn_only_AA	6624634	6622005	.	-	.	gene_id "jcn_only_AA.1065"; transcript_id "jcn_only_AA.1065"; gene_name "CUFF.1975"; flanks "6624634^,6622005^"; structure "1-,2-"; splice_chain "6623445-,6622005-"; psi "0.946304";
chr11	juncbase	intron_retention	10823208	10822634	.	-	.	gene_id "intron_retention.1231"; transcript_id "intron_retention.1231"; gene_name "CUFF.1975"; flanks "10823208-,10822634^"; structure "0,1^2-"; splice_chain ",10823208^10822634-"; psi "0.346200";
chr11	juncbase	intron_retention	119056950	119057188	.	-	.	gene_id "intron_retention.1232"; transcript_id "intron_retention.1232"; gene_name "CUFF.1975"; flanks "119056950-,119057188^"; structure "0,1^2-"; splice_chain ",119056950^119057188-"; psi "0.789500";
chr7	juncbase	jcn_only_AA	127251589	127251039	.	-	.	gene_id "jcn_only_AA.1066"; transcript_id "jcn_only_AA.1066"; gene_name "CUFF.1975"; flanks "127251589^,127251039^"; structure "1-,2-"; splice_chain "127251260-,127251039-"; psi "0.715500";
chr22	juncbase	jcn_only_AD	47309342	47393530	.	-	.	gene_id "jcn_only_AD.1271"; transcript_id "jcn_only_AD.1271"; gene_name "CUFF.1975"; flanks "47309342-,47393530-"; structure "1^,2^"; splice_chain "47309342^,47370295^"; psi "0.032300";
chr17	juncbase	jcn_only_AA	15587510	15586471	.	-	.	gene_id "jcn_only_AA.1067"; transcript_id "jcn_only_AA.1067"; gene_name "CUFF.1975"; flanks "15587510^,15586471^"; structure "1-,2-"; splice_chain "15586685-,15586471-"; psi "0.936600";
chrX	juncbase	intron_retention	85282495	85236813	.	-	.	gene_id "intron_retention.1233"; transcript_id "intron_retention.1233"; gene_name "CUFF.1975"; flanks "85282495-,85236813^"; structure "0,1^2-"; splice_chain ",85282495^85236813-"; psi "0.526300";
chr17	juncbase	intron_retention	29685640	29685987	.	-	.	gene_id "intron_retention.1234"; transcript_id "intron_retention.1234"; gene_name "CUFF.1975"; flanks "29685640-,29685987^"; structure "0,1^2-"; splice_chain ",29685640^29685987-"; psi "0.025200";
chr3	juncbase	intron_retention	122880302	122880727	.	-	.	gene_id "intron_retention.1235"; transcript_id "intron_retention.1235"; gene_name "CUFF.1975"; flanks "122880302-,122880727^"; structure "0,1^2-"; splice_chain ",122880302^122880727-"; psi "0.191800";
chr10	juncbase	cassette	6263490	6265921	.	-	.	gene_id "cassette.906"; transcript_id "cassette.906"; gene_name "CUFF.1975"; flanks "6263490^,6265921-"; structure "0,1-2^"; splice_chain ",6264818-6264947^"; psi "0.983900";
chr15	juncbase	jcn_only_AA	78807449	78819722	.	-	.	gene_id "jcn_only_AA.1068"; transcript_id "jcn_only_AA.1068"; gene_name "CUFF.1975"; flanks "78807449^,78819722^"; structure "1-,2-"; splice_chain "78810930-,78819722-"; psi "0.883200";
chr22	juncbase	intron_retention	51009804	51009721	.	-	.	gene_id "intron_retention.1236"; transcript_id "intron_retention.1236"; gene_name "CUFF.1975"; flanks "51009804-,51009721^"; structure "0,1^2-"; splice_chain ",51009804^51009721-"; psi "0.178600";
chr7	juncbase	jcn_only_AD	150784159	150813880	.	-	.	gene_id "jcn_only_AD.1272"; transcript_id "jcn_only_AD.1272"; gene_name "CUFF.1975"; flanks "150784159-,150813880-"; structure "1^,2^"; splice_chain "150784159^,150812728^"; psi "0.428383";
chr7	juncbase	jcn_only_AD	150784291	150813880	.	-	.	gene_id "jcn_only_AD.1273"; transcript_id "jcn_only_AD.1273"; gene_name "CUFF.1975"; flanks "150784291-,150813880-"; structure "1^,2^"; splice_chain "150784291^,150812728^"; psi "0.155049";
chr7	juncbase	jcn_only_AD	150783147	150813880	.	-	.	gene_id "jcn_only_AD.1274"; transcript_id "jcn_only_AD.1274"; gene_name "CUFF.1975"; flanks "150783147-,150813880-"; structure "1^,2^"; splice_chain "150783147^,150812728^"; psi "0.175985";
chr7	juncbase	jcn_only_AD	150787634	150813880	.	-	.	gene_id "jcn_only_AD.1275"; transcript_id "jcn_only_AD.1275"; gene_name "CUFF.1975"; flanks "150787634-,150813880-"; structure "1^,2^"; splice_chain "150787634^,150812728^"; psi "0.084040";
chr7	juncbase	jcn_only_AD	150809331	150813880	.	-	.	gene_id "jcn_only_AD.1276"; transcript_id "jcn_only_AD.1276"; gene_name "CUFF.1975"; flanks "150809331-,150813880-"; structure "1^,2^"; splice_chain "150809331^,150812728^"; psi "0.500481";
chr7	juncbase	jcn_only_AD	150783096	150813880	.	-	.	gene_id "jcn_only_AD.1277"; transcript_id "jcn_only_AD.1277"; gene_name "CUFF.1975"; flanks "150783096-,150813880-"; structure "1^,2^"; splice_chain "150783096^,150812728^"; psi "0.108897";
chr11	juncbase	cassette	10827454	10825965	.	-	.	gene_id "cassette.907"; transcript_id "cassette.907"; gene_name "CUFF.1975"; flanks "10827454^,10825965-"; structure "0,1-2^"; splice_chain ",10826562-10826460^"; psi "0.882200";
chr19	juncbase	cassette	58963071	58965063	.	-	.	gene_id "cassette.908"; transcript_id "cassette.908"; gene_name "CUFF.1975"; flanks "58963071^,58965063-"; structure "0,1-2^"; splice_chain ",58963495-58964149^"; psi "0.911500";
chr16	juncbase	jcn_only_AA	4475479	4466962	.	-	.	gene_id "jcn_only_AA.1069"; transcript_id "jcn_only_AA.1069"; gene_name "CUFF.1975"; flanks "4475479^,4466962^"; structure "1-,2-"; splice_chain "4470554-,4466962-"; psi "0.490900";
chr17	juncbase	jcn_only_AA	15584179	15580996	.	-	.	gene_id "jcn_only_AA.1070"; transcript_id "jcn_only_AA.1070"; gene_name "CUFF.1975"; flanks "15584179^,15580996^"; structure "1-,2-"; splice_chain "15581035-,15580996-"; psi "0.083123";
chr17	juncbase	jcn_only_AA	15584179	15580594	.	-	.	gene_id "jcn_only_AA.1071"; transcript_id "jcn_only_AA.1071"; gene_name "CUFF.1975"; flanks "15584179^,15580594^"; structure "1-,2-"; splice_chain "15581035-,15580594-"; psi "0.230805";
chr17	juncbase	jcn_only_AA	15584179	15562190	.	-	.	gene_id "jcn_only_AA.1072"; transcript_id "jcn_only_AA.1072"; gene_name "CUFF.1975"; flanks "15584179^,15562190^"; structure "1-,2-"; splice_chain "15581035-,15562190-"; psi "0.333333";
chr17	juncbase	jcn_only_AA	15584179	15557745	.	-	.	gene_id "jcn_only_AA.1073"; transcript_id "jcn_only_AA.1073"; gene_name "CUFF.1975"; flanks "15584179^,15557745^"; structure "1-,2-"; splice_chain "15581035-,15557745-"; psi "0.285963";
chr17	juncbase	jcn_only_AA	15584179	15546130	.	-	.	gene_id "jcn_only_AA.1074"; transcript_id "jcn_only_AA.1074"; gene_name "CUFF.1975"; flanks "15584179^,15546130^"; structure "1-,2-"; splice_chain "15581035-,15546130-"; psi "0.432825";
chr1	juncbase	jcn_only_AA	16935003	16928338	.	-	.	gene_id "jcn_only_AA.1075"; transcript_id "jcn_only_AA.1075"; gene_name "CUFF.1975"; flanks "16935003^,16928338^"; structure "1-,2-"; splice_chain "16934186-,16928338-"; psi "0.093030";
chr1	juncbase	jcn_only_AA	16935003	16921508	.	-	.	gene_id "jcn_only_AA.1076"; transcript_id "jcn_only_AA.1076"; gene_name "CUFF.1975"; flanks "16935003^,16921508^"; structure "1-,2-"; splice_chain "16934186-,16921508-"; psi "0.277753";
chr9	juncbase	jcn_only_AD	35078602	35077396	.	-	.	gene_id "jcn_only_AD.1278"; transcript_id "jcn_only_AD.1278"; gene_name "CUFF.1975"; flanks "35078602-,35077396-"; structure "1^,2^"; splice_chain "35078602^,35078138^"; psi "0.183600";
chr4	juncbase	cassette	152108575	152100549	.	-	.	gene_id "cassette.909"; transcript_id "cassette.909"; gene_name "CUFF.1975"; flanks "152108575^,152100549-"; structure "0,1-2^"; splice_chain ",152102881-152102841^"; psi "0.177200";
chr19	juncbase	jcn_only_AA	40913813	40909769	.	-	.	gene_id "jcn_only_AA.1077"; transcript_id "jcn_only_AA.1077"; gene_name "CUFF.1975"; flanks "40913813^,40909769^"; structure "1-,2-"; splice_chain "40913626-,40909769-"; psi "0.157900";
chr18	juncbase	jcn_only_AD	55713250	55833020	.	-	.	gene_id "jcn_only_AD.1279"; transcript_id "jcn_only_AD.1279"; gene_name "CUFF.1975"; flanks "55713250-,55833020-"; structure "1^,2^"; splice_chain "55713250^,55758859^"; psi "0.822283";
chr18	juncbase	jcn_only_AD	55711940	55833020	.	-	.	gene_id "jcn_only_AD.1280"; transcript_id "jcn_only_AD.1280"; gene_name "CUFF.1975"; flanks "55711940-,55833020-"; structure "1^,2^"; splice_chain "55711940^,55758859^"; psi "0.703804";
chr18	juncbase	jcn_only_AD	55713020	55833020	.	-	.	gene_id "jcn_only_AD.1281"; transcript_id "jcn_only_AD.1281"; gene_name "CUFF.1975"; flanks "55713020-,55833020-"; structure "1^,2^"; splice_chain "55713020^,55758859^"; psi "0.839784";
chr18	juncbase	jcn_only_AD	55712847	55833020	.	-	.	gene_id "jcn_only_AD.1282"; transcript_id "jcn_only_AD.1282"; gene_name "CUFF.1975"; flanks "55712847-,55833020-"; structure "1^,2^"; splice_chain "55712847^,55758859^"; psi "0.818232";
chr18	juncbase	jcn_only_AD	55714742	55833020	.	-	.	gene_id "jcn_only_AD.1283"; transcript_id "jcn_only_AD.1283"; gene_name "CUFF.1975"; flanks "55714742-,55833020-"; structure "1^,2^"; splice_chain "55714742^,55758859^"; psi "0.827713";
chr18	juncbase	jcn_only_AD	55722108	55833020	.	-	.	gene_id "jcn_only_AD.1284"; transcript_id "jcn_only_AD.1284"; gene_name "CUFF.1975"; flanks "55722108-,55833020-"; structure "1^,2^"; splice_chain "55722108^,55758859^"; psi "0.618881";
chr15	juncbase	jcn_only_AD	57565460	57574643	.	-	.	gene_id "jcn_only_AD.1285"; transcript_id "jcn_only_AD.1285"; gene_name "CUFF.1975"; flanks "57565460-,57574643-"; structure "1^,2^"; splice_chain "57565460^,57573990^"; psi "0.915400";
chr3	juncbase	jcn_only_AA	120357302	120352175	.	-	.	gene_id "jcn_only_AA.1078"; transcript_id "jcn_only_AA.1078"; gene_name "CUFF.1975"; flanks "120357302^,120352175^"; structure "1-,2-"; splice_chain "120352437-,120352175-"; psi "0.827300";
chr2	juncbase	jcn_only_AD	3464107	3469368	.	-	.	gene_id "jcn_only_AD.1286"; transcript_id "jcn_only_AD.1286"; gene_name "CUFF.1975"; flanks "3464107-,3469368-"; structure "1^,2^"; splice_chain "3464107^,3466842^"; psi "0.873900";
chr19	juncbase	cassette	55085379	55085768	.	-	.	gene_id "cassette.910"; transcript_id "cassette.910"; gene_name "CUFF.1975"; flanks "55085379^,55085768-"; structure "0,1-2^"; splice_chain ",55085543-55085578^"; psi "0.959900";
chr14	juncbase	cassette	77272759	77270255	.	-	.	gene_id "cassette.911"; transcript_id "cassette.911"; gene_name "CUFF.1975"; flanks "77272759^,77270255-"; structure "0,1-2^"; splice_chain ",77270758-77270718^"; psi "0.954000";
chr22	juncbase	intron_retention	29695270	29695589	.	-	.	gene_id "intron_retention.1237"; transcript_id "intron_retention.1237"; gene_name "CUFF.1975"; flanks "29695270-,29695589^"; structure "0,1^2-"; splice_chain ",29695270^29695589-"; psi "0.164600";
chr6	juncbase	intron_retention	31937197	31937292	.	-	.	gene_id "intron_retention.1238"; transcript_id "intron_retention.1238"; gene_name "CUFF.1975"; flanks "31937197-,31937292^"; structure "0,1^2-"; splice_chain ",31937197^31937292-"; psi "0.006500";
chr19	juncbase	cassette	41356152	41354668	.	-	.	gene_id "cassette.912"; transcript_id "cassette.912"; gene_name "CUFF.1975"; flanks "41356152^,41354668-"; structure "0,1-2^"; splice_chain ",41355885-41355723^"; psi "0.811900";
chr17	juncbase	jcn_only_AA	5421066	5405192	.	-	.	gene_id "jcn_only_AA.1079"; transcript_id "jcn_only_AA.1079"; gene_name "CUFF.1975"; flanks "5421066^,5405192^"; structure "1-,2-"; splice_chain "5409297-,5405192-"; psi "0.903846";
chr19	juncbase	jcn_only_AA	6199487	6148340	.	-	.	gene_id "jcn_only_AA.1080"; transcript_id "jcn_only_AA.1080"; gene_name "CUFF.1975"; flanks "6199487^,6148340^"; structure "1-,2-"; splice_chain "6176454-,6148340-"; psi "0.762694";
chr17	juncbase	cassette	15539350	15532512	.	-	.	gene_id "cassette.913"; transcript_id "cassette.913"; gene_name "CUFF.1975"; flanks "15539350^,15532512-"; structure "0,1-2^"; splice_chain ",15535028-15534933^"; psi "0.560700";
chr19	juncbase	jcn_only_AD	39924162	39924058	.	-	.	gene_id "jcn_only_AD.1287"; transcript_id "jcn_only_AD.1287"; gene_name "CUFF.1975"; flanks "39924162-,39924058-"; structure "1^,2^"; splice_chain "39924162^,39924134^"; psi "0.982877";
chr19	juncbase	jcn_only_AD	39924158	39924058	.	-	.	gene_id "jcn_only_AD.1288"; transcript_id "jcn_only_AD.1288"; gene_name "CUFF.1975"; flanks "39924158-,39924058-"; structure "1^,2^"; splice_chain "39924158^,39924134^"; psi "0.817661";
chr22	juncbase	cassette	51015286	51014764	.	-	.	gene_id "cassette.914"; transcript_id "cassette.914"; gene_name "CUFF.1975"; flanks "51015286^,51014764-"; structure "0,1-2^"; splice_chain ",51015066-51014965^"; psi "0.852600";
chr14	juncbase	jcn_only_AA	76349245	76368485	.	-	.	gene_id "jcn_only_AA.1081"; transcript_id "jcn_only_AA.1081"; gene_name "CUFF.1975"; flanks "76349245^,76368485^"; structure "1-,2-"; splice_chain "76353043-,76368485-"; psi "0.688400";
chr5	juncbase	jcn_only_AA	60194103	60186913	.	-	.	gene_id "jcn_only_AA.1082"; transcript_id "jcn_only_AA.1082"; gene_name "CUFF.1975"; flanks "60194103^,60186913^"; structure "1-,2-"; splice_chain "60189470-,60186913-"; psi "0.692300";
chr1	juncbase	jcn_only_AA	32827331	32827136	.	-	.	gene_id "jcn_only_AA.1083"; transcript_id "jcn_only_AA.1083"; gene_name "CUFF.1975"; flanks "32827331^,32827136^"; structure "1-,2-"; splice_chain "32827165-,32827136-"; psi "0.427000";
chr17	juncbase	cassette	29687721	29701031	.	-	.	gene_id "cassette.915"; transcript_id "cassette.915"; gene_name "CUFF.1975"; flanks "29687721^,29701031-"; structure "0,1-2^"; splice_chain ",29694243-29694296^"; psi "0.180300";
chr11	juncbase	intron_retention	10830429	10830290	.	-	.	gene_id "intron_retention.1239"; transcript_id "intron_retention.1239"; gene_name "CUFF.1975"; flanks "10830429-,10830290^"; structure "0,1^2-"; splice_chain ",10830429^10830290-"; psi "0.926400";
chr2	juncbase	jcn_only_AD	1168869	1215568	.	-	.	gene_id "jcn_only_AD.1289"; transcript_id "jcn_only_AD.1289"; gene_name "CUFF.1975"; flanks "1168869-,1215568-"; structure "1^,2^"; splice_chain "1168869^,1206365^"; psi "0.467400";
chr14	juncbase	jcn_only_AD	59950398	59946069	.	-	.	gene_id "jcn_only_AD.1290"; transcript_id "jcn_only_AD.1290"; gene_name "CUFF.1975"; flanks "59950398-,59946069-"; structure "1^,2^"; splice_chain "59950398^,59950208^"; psi "0.834942";
chr14	juncbase	jcn_only_AD	59950527	59946069	.	-	.	gene_id "jcn_only_AD.1291"; transcript_id "jcn_only_AD.1291"; gene_name "CUFF.1975"; flanks "59950527-,59946069-"; structure "1^,2^"; splice_chain "59950527^,59950208^"; psi "0.779213";
chr22	juncbase	jcn_only_AD	29469209	29490246	.	-	.	gene_id "jcn_only_AD.1292"; transcript_id "jcn_only_AD.1292"; gene_name "CUFF.1975"; flanks "29469209-,29490246-"; structure "1^,2^"; splice_chain "29469209^,29469215^"; psi "0.357100";
chr3	juncbase	jcn_only_AD	73453299	73450160	.	-	.	gene_id "jcn_only_AD.1293"; transcript_id "jcn_only_AD.1293"; gene_name "CUFF.1975"; flanks "73453299-,73450160-"; structure "1^,2^"; splice_chain "73453299^,73450920^"; psi "0.892100";
chr5	juncbase	jcn_only_AA	37310654	37309369	.	-	.	gene_id "jcn_only_AA.1084"; transcript_id "jcn_only_AA.1084"; gene_name "CUFF.1975"; flanks "37310654^,37309369^"; structure "1-,2-"; splice_chain "37309674-,37309369-"; psi "0.625000";
chr17	juncbase	intron_retention	1944915	1945062	.	-	.	gene_id "intron_retention.1240"; transcript_id "intron_retention.1240"; gene_name "CUFF.1975"; flanks "1944915-,1945062^"; structure "0,1^2-"; splice_chain ",1944915^1945062-"; psi "0.191500";
chr17	juncbase	jcn_only_AD	1617150	1615693	.	-	.	gene_id "jcn_only_AD.1294"; transcript_id "jcn_only_AD.1294"; gene_name "CUFF.1975"; flanks "1617150-,1615693-"; structure "1^,2^"; splice_chain "1617150^,1616997^"; psi "0.593200";
chr17	juncbase	intron_retention	61904883	61904980	.	-	.	gene_id "intron_retention.1241"; transcript_id "intron_retention.1241"; gene_name "CUFF.1975"; flanks "61904883-,61904980^"; structure "0,1^2-"; splice_chain ",61904883^61904980-"; psi "0.493600";
chr16	juncbase	jcn_only_AD	23507035	23505699	.	-	.	gene_id "jcn_only_AD.1295"; transcript_id "jcn_only_AD.1295"; gene_name "CUFF.1975"; flanks "23507035-,23505699-"; structure "1^,2^"; splice_chain "23507035^,23507010^"; psi "0.064164";
chr16	juncbase	jcn_only_AD	23507015	23505699	.	-	.	gene_id "jcn_only_AD.1296"; transcript_id "jcn_only_AD.1296"; gene_name "CUFF.1975"; flanks "23507015-,23505699-"; structure "1^,2^"; splice_chain "23507015^,23507010^"; psi "0.430175";
chr1	juncbase	intron_retention	153930875	153924080	.	-	.	gene_id "intron_retention.1242"; transcript_id "intron_retention.1242"; gene_name "CUFF.1975"; flanks "153930875-,153924080^"; structure "0,1^2-"; splice_chain ",153930875^153924080-"; psi "0.822900";
chr15	juncbase	jcn_only_AA	57574796	57591424	.	-	.	gene_id "jcn_only_AA.1085"; transcript_id "jcn_only_AA.1085"; gene_name "CUFF.1975"; flanks "57574796^,57591424^"; structure "1-,2-"; splice_chain "57583027-,57591424-"; psi "0.039642";
chr11	juncbase	jcn_only_AA	124767622	124766951	.	-	.	gene_id "jcn_only_AA.1086"; transcript_id "jcn_only_AA.1086"; gene_name "CUFF.1975"; flanks "124767622^,124766951^"; structure "1-,2-"; splice_chain "124767528-,124766951-"; psi "0.121369";
chr11	juncbase	jcn_only_AA	124767622	124767157	.	-	.	gene_id "jcn_only_AA.1087"; transcript_id "jcn_only_AA.1087"; gene_name "CUFF.1975"; flanks "124767622^,124767157^"; structure "1-,2-"; splice_chain "124767528-,124767157-"; psi "0.772254";
chr5	juncbase	jcn_only_AA	36725216	36668813	.	-	.	gene_id "jcn_only_AA.1088"; transcript_id "jcn_only_AA.1088"; gene_name "CUFF.1975"; flanks "36725216^,36668813^"; structure "1-,2-"; splice_chain "36705953-,36668813-"; psi "0.129200";
chr17	juncbase	intron_retention	80416706	80417876	.	-	.	gene_id "intron_retention.1243"; transcript_id "intron_retention.1243"; gene_name "CUFF.1975"; flanks "80416706-,80417876^"; structure "0,1^2-"; splice_chain ",80416706^80417876-"; psi "0.071400";
chr1	juncbase	cassette	167341273	167345266	.	-	.	gene_id "cassette.916"; transcript_id "cassette.916"; gene_name "CUFF.1975"; flanks "167341273^,167345266-"; structure "0,1-2^"; splice_chain ",167343345-167343533^"; psi "0.981900";
chr17	juncbase	cassette	61571831	61574159	.	-	.	gene_id "cassette.917"; transcript_id "cassette.917"; gene_name "CUFF.1975"; flanks "61571831^,61574159-"; structure "0,1-2^"; splice_chain ",61573755-61573877^"; psi "0.839000";
chr15	juncbase	intron_retention	89878600	89878880	.	-	.	gene_id "intron_retention.1244"; transcript_id "intron_retention.1244"; gene_name "CUFF.1975"; flanks "89878600-,89878880^"; structure "0,1^2-"; splice_chain ",89878600^89878880-"; psi "0.696600";
chr17	juncbase	cassette	17380579	17394593	.	-	.	gene_id "cassette.918"; transcript_id "cassette.918"; gene_name "CUFF.1975"; flanks "17380579^,17394593-"; structure "0,1-2^"; splice_chain ",17388614-17388747^"; psi "0.739100";
chr3	juncbase	intron_retention	38519783	38519866	.	-	.	gene_id "intron_retention.1245"; transcript_id "intron_retention.1245"; gene_name "CUFF.1975"; flanks "38519783-,38519866^"; structure "0,1^2-"; splice_chain ",38519783^38519866-"; psi "0.960000";
chr3	juncbase	jcn_only_AA	133894453	133794057	.	-	.	gene_id "jcn_only_AA.1089"; transcript_id "jcn_only_AA.1089"; gene_name "CUFF.1975"; flanks "133894453^,133794057^"; structure "1-,2-"; splice_chain "133878217-,133794057-"; psi "0.025700";
chr4	juncbase	jcn_only_AA	37831753	37841480	.	-	.	gene_id "jcn_only_AA.1090"; transcript_id "jcn_only_AA.1090"; gene_name "CUFF.1975"; flanks "37831753^,37841480^"; structure "1-,2-"; splice_chain "37836240-,37841480-"; psi "0.447300";
chr17	juncbase	jcn_only_AD	66511707	66518897	.	-	.	gene_id "jcn_only_AD.1297"; transcript_id "jcn_only_AD.1297"; gene_name "CUFF.1975"; flanks "66511707-,66518897-"; structure "1^,2^"; splice_chain "66511707^,66511717^"; psi "0.023800";
chr17	juncbase	jcn_only_AD	15580490	15555260	.	-	.	gene_id "jcn_only_AD.1298"; transcript_id "jcn_only_AD.1298"; gene_name "CUFF.1975"; flanks "15580490-,15555260-"; structure "1^,2^"; splice_chain "15580490^,15562116^"; psi "0.795700";
chr17	juncbase	intron_retention	61907309	61907631	.	-	.	gene_id "intron_retention.1246"; transcript_id "intron_retention.1246"; gene_name "CUFF.1975"; flanks "61907309-,61907631^"; structure "0,1^2-"; splice_chain ",61907309^61907631-"; psi "0.360000";
chr10	juncbase	jcn_only_AD	124134477	124151819	.	-	.	gene_id "jcn_only_AD.1299"; transcript_id "jcn_only_AD.1299"; gene_name "CUFF.1975"; flanks "124134477-,124151819-"; structure "1^,2^"; splice_chain "124134477^,124145703^"; psi "0.704911";
chr2	juncbase	cassette	1204916	1243510	.	-	.	gene_id "cassette.919"; transcript_id "cassette.919"; gene_name "CUFF.1975"; flanks "1204916^,1243510-"; structure "0,1-2^"; splice_chain ",1241660-1241789^"; psi "0.767900";
chr19	juncbase	cassette	14867050	14865939	.	-	.	gene_id "cassette.920"; transcript_id "cassette.920"; gene_name "CUFF.1975"; flanks "14867050^,14865939-"; structure "0,1-2^"; splice_chain ",14866656-14866466^"; psi "0.537600";
chr19	juncbase	cassette	14867050	14863338	.	-	.	gene_id "cassette.921"; transcript_id "cassette.921"; gene_name "CUFF.1975"; flanks "14867050^,14863338-"; structure "0,1-2^"; splice_chain ",14866656-14866466^"; psi "0.537600";
chr5	juncbase	jcn_only_AD	129019966	129030413	.	-	.	gene_id "jcn_only_AD.1300"; transcript_id "jcn_only_AD.1300"; gene_name "CUFF.1975"; flanks "129019966-,129030413-"; structure "1^,2^"; splice_chain "129019966^,129023907^"; psi "0.419400";
chr7	juncbase	jcn_only_AA	156629507	156556489	.	-	.	gene_id "jcn_only_AA.1091"; transcript_id "jcn_only_AA.1091"; gene_name "CUFF.1975"; flanks "156629507^,156556489^"; structure "1-,2-"; splice_chain "156626486-,156556489-"; psi "0.048304";
chr2	juncbase	intron_retention	99232809	99232895	.	-	.	gene_id "intron_retention.1247"; transcript_id "intron_retention.1247"; gene_name "CUFF.1975"; flanks "99232809-,99232895^"; structure "0,1^2-"; splice_chain ",99232809^99232895-"; psi "0.307300";
chr2	juncbase	jcn_only_AD	208031864	207989128	.	-	.	gene_id "jcn_only_AD.1301"; transcript_id "jcn_only_AD.1301"; gene_name "CUFF.1975"; flanks "208031864-,207989128-"; structure "1^,2^"; splice_chain "208031864^,208030191^"; psi "0.067137";
chr8	juncbase	jcn_only_AD	74891096	74893390	.	-	.	gene_id "jcn_only_AD.1302"; transcript_id "jcn_only_AD.1302"; gene_name "CUFF.1975"; flanks "74891096-,74893390-"; structure "1^,2^"; splice_chain "74891096^,74891406^"; psi "0.037847";
chr8	juncbase	jcn_only_AD	74891110	74893390	.	-	.	gene_id "jcn_only_AD.1303"; transcript_id "jcn_only_AD.1303"; gene_name "CUFF.1975"; flanks "74891110-,74893390-"; structure "1^,2^"; splice_chain "74891110^,74891406^"; psi "0.131103";
chr3	juncbase	intron_retention	51749199	51750034	.	-	.	gene_id "intron_retention.1248"; transcript_id "intron_retention.1248"; gene_name "CUFF.1975"; flanks "51749199-,51750034^"; structure "0,1^2-"; splice_chain ",51749199^51750034-"; psi "0.894000";
chr11	juncbase	intron_retention	119059260	119059349	.	-	.	gene_id "intron_retention.1249"; transcript_id "intron_retention.1249"; gene_name "CUFF.1975"; flanks "119059260-,119059349^"; structure "0,1^2-"; splice_chain ",119059260^119059349-"; psi "0.060200";
chr2	juncbase	cassette	33540336	33572434	.	-	.	gene_id "cassette.922"; transcript_id "cassette.922"; gene_name "CUFF.1975"; flanks "33540336^,33572434-"; structure "0,1-2^"; splice_chain ",33567905-33568030^"; psi "0.603300";
chr3	juncbase	jcn_only_AD	68055887	68466430	.	-	.	gene_id "jcn_only_AD.1304"; transcript_id "jcn_only_AD.1304"; gene_name "CUFF.1975"; flanks "68055887-,68466430-"; structure "1^,2^"; splice_chain "68055887^,68300061^"; psi "0.383800";
chr18	juncbase	cassette	56001124	56016769	.	-	.	gene_id "cassette.923"; transcript_id "cassette.923"; gene_name "CUFF.1975"; flanks "56001124^,56016769-"; structure "0,1-2^"; splice_chain ",56010138-56010335^"; psi "0.967600";
chr3	juncbase	jcn_only_AA	133407208	133418749	.	-	.	gene_id "jcn_only_AA.1092"; transcript_id "jcn_only_AA.1092"; gene_name "CUFF.1975"; flanks "133407208^,133418749^"; structure "1-,2-"; splice_chain "133410567-,133418749-"; psi "0.761915";
chr3	juncbase	jcn_only_AA	133407208	133419726	.	-	.	gene_id "jcn_only_AA.1093"; transcript_id "jcn_only_AA.1093"; gene_name "CUFF.1975"; flanks "133407208^,133419726^"; structure "1-,2-"; splice_chain "133410567-,133419726-"; psi "0.821866";
chr20	juncbase	intron_retention	30137924	30142549	.	-	.	gene_id "intron_retention.1250"; transcript_id "intron_retention.1250"; gene_name "CUFF.1975"; flanks "30137924-,30142549^"; structure "0,1^2-"; splice_chain ",30137924^30142549-"; psi "0.028000";
chr11	juncbase	jcn_only_AA	118402586	118403125	.	-	.	gene_id "jcn_only_AA.1094"; transcript_id "jcn_only_AA.1094"; gene_name "CUFF.1975"; flanks "118402586^,118403125^"; structure "1-,2-"; splice_chain "118403005-,118403125-"; psi "0.681013";
chr5	juncbase	intron_retention	134181902	134190588	.	-	.	gene_id "intron_retention.1251"; transcript_id "intron_retention.1251"; gene_name "CUFF.1975"; flanks "134181902-,134190588^"; structure "0,1^2-"; splice_chain ",134181902^134190588-"; psi "0.333300";
chr3	juncbase	jcn_only_AD	107594977	107586272	.	-	.	gene_id "jcn_only_AD.1305"; transcript_id "jcn_only_AD.1305"; gene_name "CUFF.1975"; flanks "107594977-,107586272-"; structure "1^,2^"; splice_chain "107594977^,107591815^"; psi "0.187721";
chr3	juncbase	jcn_only_AD	107596160	107586272	.	-	.	gene_id "jcn_only_AD.1306"; transcript_id "jcn_only_AD.1306"; gene_name "CUFF.1975"; flanks "107596160-,107586272-"; structure "1^,2^"; splice_chain "107596160^,107591815^"; psi "0.398130";
chr1	juncbase	intron_retention	156909340	156909077	.	-	.	gene_id "intron_retention.1252"; transcript_id "intron_retention.1252"; gene_name "CUFF.1975"; flanks "156909340-,156909077^"; structure "0,1^2-"; splice_chain ",156909340^156909077-"; psi "0.250000";
chr12	juncbase	jcn_only_AD	4653070	4654385	.	-	.	gene_id "jcn_only_AD.1307"; transcript_id "jcn_only_AD.1307"; gene_name "CUFF.1975"; flanks "4653070-,4654385-"; structure "1^,2^"; splice_chain "4653070^,4653077^"; psi "0.857800";
chr1	juncbase	jcn_only_AD	78445303	78546359	.	-	.	gene_id "jcn_only_AD.1308"; transcript_id "jcn_only_AD.1308"; gene_name "CUFF.1975"; flanks "78445303-,78546359-"; structure "1^,2^"; splice_chain "78445303^,78512018^"; psi "0.982200";
chr15	juncbase	intron_retention	97327060	97327383	.	-	.	gene_id "intron_retention.1253"; transcript_id "intron_retention.1253"; gene_name "CUFF.1975"; flanks "97327060-,97327383^"; structure "0,1^2-"; splice_chain ",97327060^97327383-"; psi "0.328800";
chr15	juncbase	jcn_only_AD	55484918	55483245	.	-	.	gene_id "jcn_only_AD.1309"; transcript_id "jcn_only_AD.1309"; gene_name "CUFF.1975"; flanks "55484918-,55483245-"; structure "1^,2^"; splice_chain "55484918^,55484601^"; psi "0.415400";
chr15	juncbase	cassette	44864881	44859790	.	-	.	gene_id "cassette.924"; transcript_id "cassette.924"; gene_name "CUFF.1975"; flanks "44864881^,44859790-"; structure "0,1-2^"; splice_chain ",44862856-44862723^"; psi "0.605100";
chr7	juncbase	cassette	6641771	6647168	.	-	.	gene_id "cassette.925"; transcript_id "cassette.925"; gene_name "CUFF.1975"; flanks "6641771^,6647168-"; structure "0,1-2^"; splice_chain ",6642295-6642383^"; psi "0.898800";
chr3	juncbase	jcn_only_AA	127313643	127299006	.	-	.	gene_id "jcn_only_AA.1095"; transcript_id "jcn_only_AA.1095"; gene_name "CUFF.1975"; flanks "127313643^,127299006^"; structure "1-,2-"; splice_chain "127310793-,127299006-"; psi "0.940000";
chr2	juncbase	jcn_only_AA	242440893	242440334	.	-	.	gene_id "jcn_only_AA.1096"; transcript_id "jcn_only_AA.1096"; gene_name "CUFF.1975"; flanks "242440893^,242440334^"; structure "1-,2-"; splice_chain "242440492-,242440334-"; psi "0.272096";
chr2	juncbase	jcn_only_AA	242440893	242440262	.	-	.	gene_id "jcn_only_AA.1097"; transcript_id "jcn_only_AA.1097"; gene_name "CUFF.1975"; flanks "242440893^,242440262^"; structure "1-,2-"; splice_chain "242440492-,242440262-"; psi "0.797161";
chr20	juncbase	cassette	29978226	29965242	.	-	.	gene_id "cassette.926"; transcript_id "cassette.926"; gene_name "CUFF.1975"; flanks "29978226^,29965242-"; structure "0,1-2^"; splice_chain ",29966194-29966155^"; psi "0.731300";
chr6	juncbase	cassette	90143094	90305635	.	-	.	gene_id "cassette.927"; transcript_id "cassette.927"; gene_name "CUFF.1975"; flanks "90143094^,90305635-"; structure "0,1-2^"; splice_chain ",90276553-90276815^"; psi "0.764400";
chr10	juncbase	jcn_only_AD	74113100	74103269	.	-	.	gene_id "jcn_only_AD.1310"; transcript_id "jcn_only_AD.1310"; gene_name "CUFF.1975"; flanks "74113100-,74103269-"; structure "1^,2^"; splice_chain "74113100^,74104708^"; psi "0.112800";
chr7	juncbase	jcn_only_AD	73098134	73105246	.	-	.	gene_id "jcn_only_AD.1311"; transcript_id "jcn_only_AD.1311"; gene_name "CUFF.1975"; flanks "73098134-,73105246-"; structure "1^,2^"; splice_chain "73098134^,73101425^"; psi "0.059103";
chr7	juncbase	jcn_only_AD	73101230	73105246	.	-	.	gene_id "jcn_only_AD.1312"; transcript_id "jcn_only_AD.1312"; gene_name "CUFF.1975"; flanks "73101230-,73105246-"; structure "1^,2^"; splice_chain "73101230^,73101425^"; psi "0.487951";
chr10	juncbase	jcn_only_AD	73972945	73956747	.	-	.	gene_id "jcn_only_AD.1313"; transcript_id "jcn_only_AD.1313"; gene_name "CUFF.1975"; flanks "73972945-,73956747-"; structure "1^,2^"; splice_chain "73972945^,73963185^"; psi "0.055183";
chr19	juncbase	intron_retention	12917893	12918021	.	-	.	gene_id "intron_retention.1254"; transcript_id "intron_retention.1254"; gene_name "CUFF.1975"; flanks "12917893-,12918021^"; structure "0,1^2-"; splice_chain ",12917893^12918021-"; psi "0.933300";
chr2	juncbase	cassette	263211	253115	.	-	.	gene_id "cassette.928"; transcript_id "cassette.928"; gene_name "CUFF.1975"; flanks "263211^,253115-"; structure "0,1-2^"; splice_chain ",260702-260085^"; psi "0.719400";
chr2	juncbase	cassette	262631	253115	.	-	.	gene_id "cassette.929"; transcript_id "cassette.929"; gene_name "CUFF.1975"; flanks "262631^,253115-"; structure "0,1-2^"; splice_chain ",260702-260085^"; psi "0.719400";
chr20	juncbase	cassette	30132838	30137867	.	-	.	gene_id "cassette.930"; transcript_id "cassette.930"; gene_name "CUFF.1975"; flanks "30132838^,30137867-"; structure "0,1-2^"; splice_chain ",30136832-30136917^"; psi "0.815000";
chr16	juncbase	jcn_only_AD	586142	587134	.	-	.	gene_id "jcn_only_AD.1314"; transcript_id "jcn_only_AD.1314"; gene_name "CUFF.1975"; flanks "586142-,587134-"; structure "1^,2^"; splice_chain "586142^,586895^"; psi "0.320000";
chr16	juncbase	cassette	4408368	4407260	.	-	.	gene_id "cassette.931"; transcript_id "cassette.931"; gene_name "CUFF.1975"; flanks "4408368^,4407260-"; structure "0,1-2^"; splice_chain ",4408104-4407969^"; psi "0.903100";
chr7	juncbase	intron_retention	75040009	75044163	.	-	.	gene_id "intron_retention.1255"; transcript_id "intron_retention.1255"; gene_name "CUFF.1975"; flanks "75040009-,75044163^"; structure "0,1^2-"; splice_chain ",75040009^75044163-"; psi "0.312500";
chr10	juncbase	cassette	35468204	35490379	.	-	.	gene_id "cassette.932"; transcript_id "cassette.932"; gene_name "CUFF.1975"; flanks "35468204^,35490379-"; structure "0,1-2^"; splice_chain ",35477128-35477316^"; psi "0.691500";
chr10	juncbase	cassette	35468204	35495823	.	-	.	gene_id "cassette.933"; transcript_id "cassette.933"; gene_name "CUFF.1975"; flanks "35468204^,35495823-"; structure "0,1-2^"; splice_chain ",35477128-35477316^"; psi "0.691500";
chr14	juncbase	intron_retention	50246524	50246931	.	-	.	gene_id "intron_retention.1256"; transcript_id "intron_retention.1256"; gene_name "CUFF.1975"; flanks "50246524-,50246931^"; structure "0,1^2-"; splice_chain ",50246524^50246931-"; psi "0.195000";
chr9	juncbase	intron_retention	34709497	34709424	.	-	.	gene_id "intron_retention.1257"; transcript_id "intron_retention.1257"; gene_name "CUFF.1975"; flanks "34709497-,34709424^"; structure "0,1^2-"; splice_chain ",34709497^34709424-"; psi "0.708300";
chr3	juncbase	cassette	125093946	125042288	.	-	.	gene_id "cassette.934"; transcript_id "cassette.934"; gene_name "CUFF.1975"; flanks "125093946^,125042288-"; structure "0,1-2^"; splice_chain ",125050082-125050002^"; psi "0.965300";
chr18	juncbase	jcn_only_AD	55713250	55833020	.	-	.	gene_id "jcn_only_AD.1315"; transcript_id "jcn_only_AD.1315"; gene_name "CUFF.1975"; flanks "55713250-,55833020-"; structure "1^,2^"; splice_chain "55713250^,55714742^"; psi "0.490597";
chr18	juncbase	jcn_only_AD	55711940	55833020	.	-	.	gene_id "jcn_only_AD.1316"; transcript_id "jcn_only_AD.1316"; gene_name "CUFF.1975"; flanks "55711940-,55833020-"; structure "1^,2^"; splice_chain "55711940^,55714742^"; psi "0.330920";
chr18	juncbase	jcn_only_AD	55713020	55833020	.	-	.	gene_id "jcn_only_AD.1317"; transcript_id "jcn_only_AD.1317"; gene_name "CUFF.1975"; flanks "55713020-,55833020-"; structure "1^,2^"; splice_chain "55713020^,55714742^"; psi "0.521766";
chr18	juncbase	jcn_only_AD	55712847	55833020	.	-	.	gene_id "jcn_only_AD.1318"; transcript_id "jcn_only_AD.1318"; gene_name "CUFF.1975"; flanks "55712847-,55833020-"; structure "1^,2^"; splice_chain "55712847^,55714742^"; psi "0.483733";
chr8	juncbase	cassette	23198505	23186078	.	-	.	gene_id "cassette.935"; transcript_id "cassette.935"; gene_name "CUFF.1975"; flanks "23198505^,23186078-"; structure "0,1-2^"; splice_chain ",23191136-23190914^"; psi "0.795500";
chr16	juncbase	jcn_only_AD	70267327	70266707	.	-	.	gene_id "jcn_only_AD.1319"; transcript_id "jcn_only_AD.1319"; gene_name "CUFF.1975"; flanks "70267327-,70266707-"; structure "1^,2^"; splice_chain "70267327^,70267316^"; psi "0.893900";
chr11	juncbase	intron_retention	124766828	124766566	.	-	.	gene_id "intron_retention.1258"; transcript_id "intron_retention.1258"; gene_name "CUFF.1975"; flanks "124766828-,124766566^"; structure "0,1^2-"; splice_chain ",124766828^124766566-"; psi "0.504000";
chr19	juncbase	cassette	55087576	55098668	.	-	.	gene_id "cassette.936"; transcript_id "cassette.936"; gene_name "CUFF.1975"; flanks "55087576^,55098668-"; structure "0,1-2^"; splice_chain ",55088932-55089190^"; psi "0.632800";
chr14	juncbase	cassette	76219298	76230958	.	-	.	gene_id "cassette.937"; transcript_id "cassette.937"; gene_name "CUFF.1975"; flanks "76219298^,76230958-"; structure "0,1-2^"; splice_chain ",76224174-76224212^"; psi "0.643700";
chr1	juncbase	cassette	166810325	166818175	.	-	.	gene_id "cassette.938"; transcript_id "cassette.938"; gene_name "CUFF.1975"; flanks "166810325^,166818175-"; structure "0,1-2^"; splice_chain ",166816731-166816829^"; psi "0.393400";
chr12	juncbase	jcn_only_AD	7087583	7086687	.	-	.	gene_id "jcn_only_AD.1320"; transcript_id "jcn_only_AD.1320"; gene_name "CUFF.1975"; flanks "7087583-,7086687-"; structure "1^,2^"; splice_chain "7087583^,7086760^"; psi "0.750000";
chr14	juncbase	jcn_only_AD	76187046	76198681	.	-	.	gene_id "jcn_only_AD.1321"; transcript_id "jcn_only_AD.1321"; gene_name "CUFF.1975"; flanks "76187046-,76198681-"; structure "1^,2^"; splice_chain "76187046^,76198576^"; psi "0.728400";
chr11	juncbase	cassette	36467990	36483892	.	-	.	gene_id "cassette.939"; transcript_id "cassette.939"; gene_name "CUFF.1975"; flanks "36467990^,36483892-"; structure "0,1-2^"; splice_chain ",36472759-36472885^"; psi "0.348700";
chr1	juncbase	intron_retention	160146352	160147309	.	-	.	gene_id "intron_retention.1259"; transcript_id "intron_retention.1259"; gene_name "CUFF.1975"; flanks "160146352-,160147309^"; structure "0,1^2-"; splice_chain ",160146352^160147309-"; psi "0.964900";
chr7	juncbase	jcn_only_AA	136554165	136699567	.	-	.	gene_id "jcn_only_AA.1098"; transcript_id "jcn_only_AA.1098"; gene_name "CUFF.1975"; flanks "136554165^,136699567^"; structure "1-,2-"; splice_chain "136676934-,136699567-"; psi "0.904727";
chr7	juncbase	jcn_only_AD	73101230	73106926	.	-	.	gene_id "jcn_only_AD.1322"; transcript_id "jcn_only_AD.1322"; gene_name "CUFF.1975"; flanks "73101230-,73106926-"; structure "1^,2^"; splice_chain "73101230^,73101425^"; psi "0.681382";
chr9	juncbase	intron_retention	130931331	130929443	.	-	.	gene_id "intron_retention.1260"; transcript_id "intron_retention.1260"; gene_name "CUFF.1975"; flanks "130931331-,130929443^"; structure "0,1^2-"; splice_chain ",130931331^130929443-"; psi "0.071300";
chr19	juncbase	intron_retention	17448385	17448817	.	-	.	gene_id "intron_retention.1261"; transcript_id "intron_retention.1261"; gene_name "CUFF.1975"; flanks "17448385-,17448817^"; structure "0,1^2-"; splice_chain ",17448385^17448817-"; psi "0.621600";
chr14	juncbase	jcn_only_AA	58899175	58906788	.	-	.	gene_id "jcn_only_AA.1099"; transcript_id "jcn_only_AA.1099"; gene_name "CUFF.1975"; flanks "58899175^,58906788^"; structure "1-,2-"; splice_chain "58899830-,58906788-"; psi "0.297614";
chr14	juncbase	jcn_only_AA	58899175	58909424	.	-	.	gene_id "jcn_only_AA.1100"; transcript_id "jcn_only_AA.1100"; gene_name "CUFF.1975"; flanks "58899175^,58909424^"; structure "1-,2-"; splice_chain "58899830-,58909424-"; psi "0.805964";
chr22	juncbase	intron_retention	29687588	29688126	.	-	.	gene_id "intron_retention.1262"; transcript_id "intron_retention.1262"; gene_name "CUFF.1975"; flanks "29687588-,29688126^"; structure "0,1^2-"; splice_chain ",29687588^29688126-"; psi "0.035900";
chr14	juncbase	jcn_only_AD	76259443	76286350	.	-	.	gene_id "jcn_only_AD.1323"; transcript_id "jcn_only_AD.1323"; gene_name "CUFF.1975"; flanks "76259443-,76286350-"; structure "1^,2^"; splice_chain "76259443^,76269596^"; psi "0.734800";
chr19	juncbase	jcn_only_AD	51537841	51537395	.	-	.	gene_id "jcn_only_AD.1324"; transcript_id "jcn_only_AD.1324"; gene_name "CUFF.1975"; flanks "51537841-,51537395-"; structure "1^,2^"; splice_chain "51537841^,51537681^"; psi "0.657000";
chr7	juncbase	intron_retention	148990583	148990842	.	-	.	gene_id "intron_retention.1263"; transcript_id "intron_retention.1263"; gene_name "CUFF.1975"; flanks "148990583-,148990842^"; structure "0,1^2-"; splice_chain ",148990583^148990842-"; psi "0.918500";
chr22	juncbase	cassette	45244940	45258155	.	-	.	gene_id "cassette.940"; transcript_id "cassette.940"; gene_name "CUFF.1975"; flanks "45244940^,45258155-"; structure "0,1-2^"; splice_chain ",45255611-45255714^"; psi "0.921900";
chr2	juncbase	intron_retention	242436715	242435949	.	-	.	gene_id "intron_retention.1264"; transcript_id "intron_retention.1264"; gene_name "CUFF.1975"; flanks "242436715-,242435949^"; structure "0,1^2-"; splice_chain ",242436715^242435949-"; psi "0.685700";
chr8	juncbase	jcn_only_AA	56663523	56637818	.	-	.	gene_id "jcn_only_AA.1101"; transcript_id "jcn_only_AA.1101"; gene_name "CUFF.1975"; flanks "56663523^,56637818^"; structure "1-,2-"; splice_chain "56652777-,56637818-"; psi "0.966527";
chr10	juncbase	cassette	123683781	123673408	.	-	.	gene_id "cassette.941"; transcript_id "cassette.941"; gene_name "CUFF.1975"; flanks "123683781^,123673408-"; structure "0,1-2^"; splice_chain ",123681926-123681864^"; psi "0.708300";
chr17	juncbase	jcn_only_AA	79478929	79478652	.	-	.	gene_id "jcn_only_AA.1102"; transcript_id "jcn_only_AA.1102"; gene_name "CUFF.1975"; flanks "79478929^,79478652^"; structure "1-,2-"; splice_chain "79478829-,79478652-"; psi "0.851300";
chr21	juncbase	intron_retention	15660867	15663607	.	-	.	gene_id "intron_retention.1265"; transcript_id "intron_retention.1265"; gene_name "CUFF.1975"; flanks "15660867-,15663607^"; structure "0,1^2-"; splice_chain ",15660867^15663607-"; psi "0.047200";
chr11	juncbase	intron_retention	118927731	118927116	.	-	.	gene_id "intron_retention.1266"; transcript_id "intron_retention.1266"; gene_name "CUFF.1975"; flanks "118927731-,118927116^"; structure "0,1^2-"; splice_chain ",118927731^118927116-"; psi "0.014900";
chr2	juncbase	jcn_only_AD	25179912	25174423	.	-	.	gene_id "jcn_only_AD.1325"; transcript_id "jcn_only_AD.1325"; gene_name "CUFF.1975"; flanks "25179912-,25174423-"; structure "1^,2^"; splice_chain "25179912^,25176419^"; psi "0.653500";
chr19	juncbase	intron_retention	17448473	17448817	.	-	.	gene_id "intron_retention.1267"; transcript_id "intron_retention.1267"; gene_name "CUFF.1975"; flanks "17448473-,17448817^"; structure "0,1^2-"; splice_chain ",17448473^17448817-"; psi "0.190800";
chr4	juncbase	jcn_only_AD	120384134	120414488	.	-	.	gene_id "jcn_only_AD.1326"; transcript_id "jcn_only_AD.1326"; gene_name "CUFF.1975"; flanks "120384134-,120414488-"; structure "1^,2^"; splice_chain "120384134^,120409872^"; psi "0.601200";
chr16	juncbase	jcn_only_AD	75589702	75579852	.	-	.	gene_id "jcn_only_AD.1327"; transcript_id "jcn_only_AD.1327"; gene_name "CUFF.1975"; flanks "75589702-,75579852-"; structure "1^,2^"; splice_chain "75589702^,75589117^"; psi "0.913600";
chr7	juncbase	jcn_only_AD	86571334	86569431	.	-	.	gene_id "jcn_only_AD.1328"; transcript_id "jcn_only_AD.1328"; gene_name "CUFF.1975"; flanks "86571334-,86569431-"; structure "1^,2^"; splice_chain "86571334^,86570668^"; psi "0.619000";
chr17	juncbase	intron_retention	80438420	80438958	.	-	.	gene_id "intron_retention.1268"; transcript_id "intron_retention.1268"; gene_name "CUFF.1975"; flanks "80438420-,80438958^"; structure "0,1^2-"; splice_chain ",80438420^80438958-"; psi "0.785700";
chr12	juncbase	intron_retention	69237612	69237714	.	-	.	gene_id "intron_retention.1269"; transcript_id "intron_retention.1269"; gene_name "CUFF.1975"; flanks "69237612-,69237714^"; structure "0,1^2-"; splice_chain ",69237612^69237714-"; psi "0.642200";
chr16	juncbase	jcn_only_AA	4455492	4445340	.	-	.	gene_id "jcn_only_AA.1103"; transcript_id "jcn_only_AA.1103"; gene_name "CUFF.1975"; flanks "4455492^,4445340^"; structure "1-,2-"; splice_chain "4447451-,4445340-"; psi "0.862900";
chr10	juncbase	jcn_only_AA	35351888	35349852	.	-	.	gene_id "jcn_only_AA.1104"; transcript_id "jcn_only_AA.1104"; gene_name "CUFF.1975"; flanks "35351888^,35349852^"; structure "1-,2-"; splice_chain "35349896-,35349852-"; psi "0.154300";
chr18	juncbase	cassette	12009986	12014264	.	-	.	gene_id "cassette.942"; transcript_id "cassette.942"; gene_name "CUFF.1975"; flanks "12009986^,12014264-"; structure "0,1-2^"; splice_chain ",12012169-12012214^"; psi "0.715900";
chr15	juncbase	jcn_only_AD	77713079	77750746	.	-	.	gene_id "jcn_only_AD.1329"; transcript_id "jcn_only_AD.1329"; gene_name "CUFF.1975"; flanks "77713079-,77750746-"; structure "1^,2^"; splice_chain "77713079^,77713346^"; psi "0.027750";
chr7	juncbase	cassette	75066793	75054991	.	-	.	gene_id "cassette.943"; transcript_id "cassette.943"; gene_name "CUFF.1975"; flanks "75066793^,75054991-"; structure "0,1-2^"; splice_chain ",75055735-75055644^"; psi "0.569900";
chr16	juncbase	intron_retention	3117416	3118181	.	-	.	gene_id "intron_retention.1270"; transcript_id "intron_retention.1270"; gene_name "CUFF.1975"; flanks "3117416-,3118181^"; structure "0,1^2-"; splice_chain ",3117416^3118181-"; psi "0.855500";
chr7	juncbase	jcn_only_AD	38816279	38813844	.	-	.	gene_id "jcn_only_AD.1330"; transcript_id "jcn_only_AD.1330"; gene_name "CUFF.1975"; flanks "38816279-,38813844-"; structure "1^,2^"; splice_chain "38816279^,38814789^"; psi "0.544400";
chr16	juncbase	jcn_only_AD	23507035	23505699	.	-	.	gene_id "jcn_only_AD.1331"; transcript_id "jcn_only_AD.1331"; gene_name "CUFF.1975"; flanks "23507035-,23505699-"; structure "1^,2^"; splice_chain "23507035^,23507015^"; psi "0.083260";
chr6	juncbase	jcn_only_AA	33239899	33240405	.	-	.	gene_id "jcn_only_AA.1105"; transcript_id "jcn_only_AA.1105"; gene_name "CUFF.1975"; flanks "33239899^,33240405^"; structure "1-,2-"; splice_chain "33240364-,33240405-"; psi "0.335200";
chr11	juncbase	intron_retention	10825684	10825597	.	-	.	gene_id "intron_retention.1271"; transcript_id "intron_retention.1271"; gene_name "CUFF.1975"; flanks "10825684-,10825597^"; structure "0,1^2-"; splice_chain ",10825684^10825597-"; psi "0.436900";
chr17	juncbase	jcn_only_AA	57784732	57756905	.	-	.	gene_id "jcn_only_AA.1106"; transcript_id "jcn_only_AA.1106"; gene_name "CUFF.1975"; flanks "57784732^,57756905^"; structure "1-,2-"; splice_chain "57777550-,57756905-"; psi "0.917453";
chr17	juncbase	jcn_only_AA	57784732	57775339	.	-	.	gene_id "jcn_only_AA.1107"; transcript_id "jcn_only_AA.1107"; gene_name "CUFF.1975"; flanks "57784732^,57775339^"; structure "1-,2-"; splice_chain "57777550-,57775339-"; psi "0.279356";
chr17	juncbase	jcn_only_AA	57784732	57777237	.	-	.	gene_id "jcn_only_AA.1108"; transcript_id "jcn_only_AA.1108"; gene_name "CUFF.1975"; flanks "57784732^,57777237^"; structure "1-,2-"; splice_chain "57777550-,57777237-"; psi "0.397943";
chr17	juncbase	jcn_only_AD	15584179	15562190	.	-	.	gene_id "jcn_only_AD.1332"; transcript_id "jcn_only_AD.1332"; gene_name "CUFF.1975"; flanks "15584179-,15562190-"; structure "1^,2^"; splice_chain "15584179^,15580490^"; psi "0.668800";
chr15	juncbase	intron_retention	64446201	64446586	.	-	.	gene_id "intron_retention.1272"; transcript_id "intron_retention.1272"; gene_name "CUFF.1975"; flanks "64446201-,64446586^"; structure "0,1^2-"; splice_chain ",64446201^64446586-"; psi "0.307700";
chr7	juncbase	cassette	74984790	74981240	.	-	.	gene_id "cassette.944"; transcript_id "cassette.944"; gene_name "CUFF.1975"; flanks "74984790^,74981240-"; structure "0,1-2^"; splice_chain ",74982902-74982816^"; psi "0.470600";
chr19	juncbase	intron_retention	41938220	41937793	.	-	.	gene_id "intron_retention.1273"; transcript_id "intron_retention.1273"; gene_name "CUFF.1975"; flanks "41938220-,41937793^"; structure "0,1^2-"; splice_chain ",41938220^41937793-"; psi "0.377600";
chr19	juncbase	intron_retention	1438891	1439715	.	-	.	gene_id "intron_retention.1274"; transcript_id "intron_retention.1274"; gene_name "CUFF.1975"; flanks "1438891-,1439715^"; structure "0,1^2-"; splice_chain ",1438891^1439715-"; psi "0.623500";
chr17	juncbase	intron_retention	79994260	79994184	.	-	.	gene_id "intron_retention.1275"; transcript_id "intron_retention.1275"; gene_name "CUFF.1975"; flanks "79994260-,79994184^"; structure "0,1^2-"; splice_chain ",79994260^79994184-"; psi "0.169800";
chr2	juncbase	cassette	4007154	4006531	.	-	.	gene_id "cassette.945"; transcript_id "cassette.945"; gene_name "CUFF.1975"; flanks "4007154^,4006531-"; structure "0,1-2^"; splice_chain ",4006985-4006842^"; psi "0.545900";
chr11	juncbase	jcn_only_AA	102953985	102937296	.	-	.	gene_id "jcn_only_AA.1109"; transcript_id "jcn_only_AA.1109"; gene_name "CUFF.1975"; flanks "102953985^,102937296^"; structure "1-,2-"; splice_chain "102953568-,102937296-"; psi "0.439900";
chr19	juncbase	jcn_only_AA	17448473	17448817	.	-	.	gene_id "jcn_only_AA.1110"; transcript_id "jcn_only_AA.1110"; gene_name "CUFF.1975"; flanks "17448473^,17448817^"; structure "1-,2-"; splice_chain "17448708-,17448817-"; psi "0.807773";
chr22	juncbase	intron_retention	29695321	29695589	.	-	.	gene_id "intron_retention.1276"; transcript_id "intron_retention.1276"; gene_name "CUFF.1975"; flanks "29695321-,29695589^"; structure "0,1^2-"; splice_chain ",29695321^29695589-"; psi "0.135900";
chr17	juncbase	intron_retention	79994965	79994757	.	-	.	gene_id "intron_retention.1277"; transcript_id "intron_retention.1277"; gene_name "CUFF.1975"; flanks "79994965-,79994757^"; structure "0,1^2-"; splice_chain ",79994965^79994757-"; psi "0.904300";
chr3	juncbase	jcn_only_AD	49339871	49338124	.	-	.	gene_id "jcn_only_AD.1333"; transcript_id "jcn_only_AD.1333"; gene_name "CUFF.1975"; flanks "49339871-,49338124-"; structure "1^,2^"; splice_chain "49339871^,49339817^"; psi "0.021700";
chr17	juncbase	intron_retention	66509119	66511535	.	-	.	gene_id "intron_retention.1278"; transcript_id "intron_retention.1278"; gene_name "CUFF.1975"; flanks "66509119-,66511535^"; structure "0,1^2-"; splice_chain ",66509119^66511535-"; psi "0.625000";
chr2	juncbase	jcn_only_AD	1320147	1371115	.	-	.	gene_id "jcn_only_AD.1334"; transcript_id "jcn_only_AD.1334"; gene_name "CUFF.1975"; flanks "1320147-,1371115-"; structure "1^,2^"; splice_chain "1320147^,1357636^"; psi "0.930300";
chr3	juncbase	intron_retention	186769134	186790637	.	-	.	gene_id "intron_retention.1279"; transcript_id "intron_retention.1279"; gene_name "CUFF.1975"; flanks "186769134-,186790637^"; structure "0,1^2-"; splice_chain ",186769134^186790637-"; psi "0.231300";
chr19	juncbase	jcn_only_AA	50308833	50308982	.	-	.	gene_id "jcn_only_AA.1111"; transcript_id "jcn_only_AA.1111"; gene_name "CUFF.1975"; flanks "50308833^,50308982^"; structure "1-,2-"; splice_chain "50308918-,50308982-"; psi "0.871600";
chr9	juncbase	jcn_only_AA	135750502	135742340	.	-	.	gene_id "jcn_only_AA.1112"; transcript_id "jcn_only_AA.1112"; gene_name "CUFF.1975"; flanks "135750502^,135742340^"; structure "1-,2-"; splice_chain "135749826-,135742340-"; psi "0.666700";
chr6	juncbase	cassette	43483627	43481371	.	-	.	gene_id "cassette.946"; transcript_id "cassette.946"; gene_name "CUFF.1975"; flanks "43483627^,43481371-"; structure "0,1-2^"; splice_chain ",43483439-43483333^"; psi "0.493500";
chr3	juncbase	cassette	125093946	125050082	.	-	.	gene_id "cassette.947"; transcript_id "cassette.947"; gene_name "CUFF.1975"; flanks "125093946^,125050082-"; structure "0,1-2^"; splice_chain ",125057755-125057666^"; psi "0.040500";
chr3	juncbase	jcn_only_AA	19992553	20017135	.	-	.	gene_id "jcn_only_AA.1113"; transcript_id "jcn_only_AA.1113"; gene_name "CUFF.1975"; flanks "19992553^,20017135^"; structure "1-,2-"; splice_chain "20017093-,20017135-"; psi "0.105791";
chr12	juncbase	jcn_only_AA	133182733	133181417	.	-	.	gene_id "jcn_only_AA.1114"; transcript_id "jcn_only_AA.1114"; gene_name "CUFF.1975"; flanks "133182733^,133181417^"; structure "1-,2-"; splice_chain "133181604-,133181417-"; psi "0.300400";
chr5	juncbase	jcn_only_AA	54570442	54569205	.	-	.	gene_id "jcn_only_AA.1115"; transcript_id "jcn_only_AA.1115"; gene_name "CUFF.1975"; flanks "54570442^,54569205^"; structure "1-,2-"; splice_chain "54569254-,54569205-"; psi "0.735800";
chr4	juncbase	jcn_only_AA	120449944	120471534	.	-	.	gene_id "jcn_only_AA.1116"; transcript_id "jcn_only_AA.1116"; gene_name "CUFF.1975"; flanks "120449944^,120471534^"; structure "1-,2-"; splice_chain "120464908-,120471534-"; psi "0.934500";
chr2	juncbase	intron_retention	242447733	242447550	.	-	.	gene_id "intron_retention.1280"; transcript_id "intron_retention.1280"; gene_name "CUFF.1975"; flanks "242447733-,242447550^"; structure "0,1^2-"; splice_chain ",242447733^242447550-"; psi "0.751300";
chr2	juncbase	jcn_only_AD	109085540	109086107	.	-	.	gene_id "jcn_only_AD.1335"; transcript_id "jcn_only_AD.1335"; gene_name "CUFF.1975"; flanks "109085540-,109086107-"; structure "1^,2^"; splice_chain "109085540^,109085788^"; psi "0.649000";
chr3	juncbase	intron_retention	28357914	28358244	.	-	.	gene_id "intron_retention.1281"; transcript_id "intron_retention.1281"; gene_name "CUFF.1975"; flanks "28357914-,28358244^"; structure "0,1^2-"; splice_chain ",28357914^28358244-"; psi "0.669000";
chr12	juncbase	intron_retention	58017881	58018649	.	-	.	gene_id "intron_retention.1282"; transcript_id "intron_retention.1282"; gene_name "CUFF.1975"; flanks "58017881-,58018649^"; structure "0,1^2-"; splice_chain ",58017881^58018649-"; psi "0.986000";
chr10	juncbase	jcn_only_AD	78674694	78669854	.	-	.	gene_id "jcn_only_AD.1336"; transcript_id "jcn_only_AD.1336"; gene_name "CUFF.1975"; flanks "78674694-,78669854-"; structure "1^,2^"; splice_chain "78674694^,78673815^"; psi "0.959600";
chrX	juncbase	cassette	47038894	47039279	.	-	.	gene_id "cassette.948"; transcript_id "cassette.948"; gene_name "CUFF.1975"; flanks "47038894^,47039279-"; structure "0,1-2^"; splice_chain ",47039083-47039180^"; psi "0.353800";
chr6	juncbase	jcn_only_AA	32122960	32123545	.	-	.	gene_id "jcn_only_AA.1117"; transcript_id "jcn_only_AA.1117"; gene_name "CUFF.1975"; flanks "32122960^,32123545^"; structure "1-,2-"; splice_chain "32123465-,32123545-"; psi "0.061300";
chr2	juncbase	intron_retention	220094680	220094950	.	-	.	gene_id "intron_retention.1283"; transcript_id "intron_retention.1283"; gene_name "CUFF.1975"; flanks "220094680-,220094950^"; structure "0,1^2-"; splice_chain ",220094680^220094950-"; psi "0.835900";
chr3	juncbase	jcn_only_AD	119187953	119188667	.	-	.	gene_id "jcn_only_AD.1337"; transcript_id "jcn_only_AD.1337"; gene_name "CUFF.1975"; flanks "119187953-,119188667-"; structure "1^,2^"; splice_chain "119187953^,119188105^"; psi "0.480045";
chr3	juncbase	jcn_only_AD	119187853	119188667	.	-	.	gene_id "jcn_only_AD.1338"; transcript_id "jcn_only_AD.1338"; gene_name "CUFF.1975"; flanks "119187853-,119188667-"; structure "1^,2^"; splice_chain "119187853^,119188105^"; psi "0.540006";
chr6	juncbase	cassette	32122554	32123545	.	-	.	gene_id "cassette.949"; transcript_id "cassette.949"; gene_name "CUFF.1975"; flanks "32122554^,32123545-"; structure "0,1-2^"; splice_chain ",32122807-32122960^"; psi "0.278200";
chr6	juncbase	cassette	32122554	32123465	.	-	.	gene_id "cassette.950"; transcript_id "cassette.950"; gene_name "CUFF.1975"; flanks "32122554^,32123465-"; structure "0,1-2^"; splice_chain ",32122807-32122960^"; psi "0.278200";
chr2	juncbase	intron_retention	208031864	207989128	.	-	.	gene_id "intron_retention.1284"; transcript_id "intron_retention.1284"; gene_name "CUFF.1975"; flanks "208031864-,207989128^"; structure "0,1^2-"; splice_chain ",208031864^207989128-"; psi "0.722200";
chr11	juncbase	jcn_only_AD	67772277	67771268	.	-	.	gene_id "jcn_only_AD.1339"; transcript_id "jcn_only_AD.1339"; gene_name "CUFF.1975"; flanks "67772277-,67771268-"; structure "1^,2^"; splice_chain "67772277^,67771418^"; psi "0.519800";
chr16	juncbase	cassette	77756514	77775479	.	-	.	gene_id "cassette.951"; transcript_id "cassette.951"; gene_name "CUFF.1975"; flanks "77756514^,77775479-"; structure "0,1-2^"; splice_chain ",77759328-77759481^"; psi "0.834000";
chr19	juncbase	jcn_only_AA	51529794	51528922	.	-	.	gene_id "jcn_only_AA.1118"; transcript_id "jcn_only_AA.1118"; gene_name "CUFF.1975"; flanks "51529794^,51528922^"; structure "1-,2-"; splice_chain "51528954-,51528922-"; psi "0.839500";
chr17	juncbase	intron_retention	79995507	79994889	.	-	.	gene_id "intron_retention.1285"; transcript_id "intron_retention.1285"; gene_name "CUFF.1975"; flanks "79995507-,79994889^"; structure "0,1^2-"; splice_chain ",79995507^79994889-"; psi "0.747700";
chr2	juncbase	intron_retention	110922265	110920712	.	-	.	gene_id "intron_retention.1286"; transcript_id "intron_retention.1286"; gene_name "CUFF.1975"; flanks "110922265-,110920712^"; structure "0,1^2-"; splice_chain ",110922265^110920712-"; psi "0.476200";
chr2	juncbase	jcn_only_AD	48898819	49003419	.	-	.	gene_id "jcn_only_AD.1340"; transcript_id "jcn_only_AD.1340"; gene_name "CUFF.1975"; flanks "48898819-,49003419-"; structure "1^,2^"; splice_chain "48898819^,48996213^"; psi "0.821811";
chr14	juncbase	jcn_only_AA	31358590	31358461	.	-	.	gene_id "jcn_only_AA.1119"; transcript_id "jcn_only_AA.1119"; gene_name "CUFF.1975"; flanks "31358590^,31358461^"; structure "1-,2-"; splice_chain "31358483-,31358461-"; psi "0.565300";
chr17	juncbase	intron_retention	61907549	61907631	.	-	.	gene_id "intron_retention.1287"; transcript_id "intron_retention.1287"; gene_name "CUFF.1975"; flanks "61907549-,61907631^"; structure "0,1^2-"; splice_chain ",61907549^61907631-"; psi "0.052800";
chr15	juncbase	jcn_only_AD	83366609	83358205	.	-	.	gene_id "jcn_only_AD.1341"; transcript_id "jcn_only_AD.1341"; gene_name "CUFF.1975"; flanks "83366609-,83358205-"; structure "1^,2^"; splice_chain "83366609^,83358515^"; psi "0.330784";
chr15	juncbase	jcn_only_AD	83378346	83358205	.	-	.	gene_id "jcn_only_AD.1342"; transcript_id "jcn_only_AD.1342"; gene_name "CUFF.1975"; flanks "83378346-,83358205-"; structure "1^,2^"; splice_chain "83378346^,83358515^"; psi "0.963839";
chr15	juncbase	jcn_only_AD	83377524	83358205	.	-	.	gene_id "jcn_only_AD.1343"; transcript_id "jcn_only_AD.1343"; gene_name "CUFF.1975"; flanks "83377524-,83358205-"; structure "1^,2^"; splice_chain "83377524^,83358515^"; psi "0.298597";
chr19	juncbase	intron_retention	39924162	39924058	.	-	.	gene_id "intron_retention.1288"; transcript_id "intron_retention.1288"; gene_name "CUFF.1975"; flanks "39924162-,39924058^"; structure "0,1^2-"; splice_chain ",39924162^39924058-"; psi "0.035300";
chr16	juncbase	cassette	105882	106539	.	-	.	gene_id "cassette.952"; transcript_id "cassette.952"; gene_name "CUFF.1975"; flanks "105882^,106539-"; structure "0,1-2^"; splice_chain ",106321-106420^"; psi "0.041200";
chr2	juncbase	jcn_only_AD	220094622	220094950	.	-	.	gene_id "jcn_only_AD.1344"; transcript_id "jcn_only_AD.1344"; gene_name "CUFF.1975"; flanks "220094622-,220094950-"; structure "1^,2^"; splice_chain "220094622^,220094680^"; psi "0.940552";
chr6	juncbase	jcn_only_AD	151757581	151754365	.	-	.	gene_id "jcn_only_AD.1345"; transcript_id "jcn_only_AD.1345"; gene_name "CUFF.1975"; flanks "151757581-,151754365-"; structure "1^,2^"; splice_chain "151757581^,151757555^"; psi "0.594400";
chr2	juncbase	jcn_only_AA	260085	253115	.	-	.	gene_id "jcn_only_AA.1120"; transcript_id "jcn_only_AA.1120"; gene_name "CUFF.1975"; flanks "260085^,253115^"; structure "1-,2-"; splice_chain "256690-,253115-"; psi "0.753600";
chr6	juncbase	intron_retention	2989967	2990103	.	-	.	gene_id "intron_retention.1289"; transcript_id "intron_retention.1289"; gene_name "CUFF.1975"; flanks "2989967-,2990103^"; structure "0,1^2-"; splice_chain ",2989967^2990103-"; psi "0.851400";
chr1	juncbase	cassette	147563998	147566015	.	-	.	gene_id "cassette.953"; transcript_id "cassette.953"; gene_name "CUFF.1975"; flanks "147563998^,147566015-"; structure "0,1-2^"; splice_chain ",147564304-147564349^"; psi "0.416700";
chr15	juncbase	cassette	57213296	57355948	.	-	.	gene_id "cassette.954"; transcript_id "cassette.954"; gene_name "CUFF.1975"; flanks "57213296^,57355948-"; structure "0,1-2^"; splice_chain ",57293547-57293582^"; psi "0.887500";
chr8	juncbase	jcn_only_AD	17434265	17434645	.	-	.	gene_id "jcn_only_AD.1346"; transcript_id "jcn_only_AD.1346"; gene_name "CUFF.1975"; flanks "17434265-,17434645-"; structure "1^,2^"; splice_chain "17434265^,17434269^"; psi "0.191200";
chr17	juncbase	jcn_only_AD	79481573	79479386	.	-	.	gene_id "jcn_only_AD.1347"; transcript_id "jcn_only_AD.1347"; gene_name "CUFF.1975"; flanks "79481573-,79479386-"; structure "1^,2^"; splice_chain "79481573^,79479490^"; psi "0.535831";
chr17	juncbase	jcn_only_AD	79490668	79479386	.	-	.	gene_id "jcn_only_AD.1348"; transcript_id "jcn_only_AD.1348"; gene_name "CUFF.1975"; flanks "79490668-,79479386-"; structure "1^,2^"; splice_chain "79490668^,79479490^"; psi "0.925743";
chr17	juncbase	jcn_only_AD	79479760	79479386	.	-	.	gene_id "jcn_only_AD.1349"; transcript_id "jcn_only_AD.1349"; gene_name "CUFF.1975"; flanks "79479760-,79479386-"; structure "1^,2^"; splice_chain "79479760^,79479490^"; psi "0.948426";
chr17	juncbase	jcn_only_AD	79479641	79479386	.	-	.	gene_id "jcn_only_AD.1350"; transcript_id "jcn_only_AD.1350"; gene_name "CUFF.1975"; flanks "79479641-,79479386-"; structure "1^,2^"; splice_chain "79479641^,79479490^"; psi "0.639241";
chr17	juncbase	jcn_only_AD	79479632	79479386	.	-	.	gene_id "jcn_only_AD.1351"; transcript_id "jcn_only_AD.1351"; gene_name "CUFF.1975"; flanks "79479632-,79479386-"; structure "1^,2^"; splice_chain "79479632^,79479490^"; psi "0.188034";
chr18	juncbase	cassette	44470543	44435578	.	-	.	gene_id "cassette.955"; transcript_id "cassette.955"; gene_name "CUFF.1975"; flanks "44470543^,44435578-"; structure "0,1-2^"; splice_chain ",44444211-44444127^"; psi "0.890900";
chr1	juncbase	jcn_only_AD	160137202	160141041	.	-	.	gene_id "jcn_only_AD.1352"; transcript_id "jcn_only_AD.1352"; gene_name "CUFF.1975"; flanks "160137202-,160141041-"; structure "1^,2^"; splice_chain "160137202^,160137219^"; psi "0.500000";
chr2	juncbase	jcn_only_AD	231023	230044	.	-	.	gene_id "jcn_only_AD.1353"; transcript_id "jcn_only_AD.1353"; gene_name "CUFF.1975"; flanks "231023-,230044-"; structure "1^,2^"; splice_chain "231023^,230547^"; psi "0.949400";
chr18	juncbase	jcn_only_AD	55713250	55833020	.	-	.	gene_id "jcn_only_AD.1354"; transcript_id "jcn_only_AD.1354"; gene_name "CUFF.1975"; flanks "55713250-,55833020-"; structure "1^,2^"; splice_chain "55713250^,55722108^"; psi "0.740215";
chr18	juncbase	jcn_only_AD	55711940	55833020	.	-	.	gene_id "jcn_only_AD.1355"; transcript_id "jcn_only_AD.1355"; gene_name "CUFF.1975"; flanks "55711940-,55833020-"; structure "1^,2^"; splice_chain "55711940^,55722108^"; psi "0.594037";
chr18	juncbase	jcn_only_AD	55713020	55833020	.	-	.	gene_id "jcn_only_AD.1356"; transcript_id "jcn_only_AD.1356"; gene_name "CUFF.1975"; flanks "55713020-,55833020-"; structure "1^,2^"; splice_chain "55713020^,55722108^"; psi "0.763474";
chr18	juncbase	jcn_only_AD	55712847	55833020	.	-	.	gene_id "jcn_only_AD.1357"; transcript_id "jcn_only_AD.1357"; gene_name "CUFF.1975"; flanks "55712847-,55833020-"; structure "1^,2^"; splice_chain "55712847^,55722108^"; psi "0.734898";
chr18	juncbase	jcn_only_AD	55714742	55833020	.	-	.	gene_id "jcn_only_AD.1358"; transcript_id "jcn_only_AD.1358"; gene_name "CUFF.1975"; flanks "55714742-,55833020-"; structure "1^,2^"; splice_chain "55714742^,55722108^"; psi "0.747383";
chr6	juncbase	intron_retention	133044873	133044193	.	-	.	gene_id "intron_retention.1290"; transcript_id "intron_retention.1290"; gene_name "CUFF.1975"; flanks "133044873-,133044193^"; structure "0,1^2-"; splice_chain ",133044873^133044193-"; psi "0.085300";
chr14	juncbase	jcn_only_AD	61497241	61503777	.	-	.	gene_id "jcn_only_AD.1359"; transcript_id "jcn_only_AD.1359"; gene_name "CUFF.1975"; flanks "61497241-,61503777-"; structure "1^,2^"; splice_chain "61497241^,61500831^"; psi "0.605800";
chr19	juncbase	jcn_only_AD	52901153	52901620	.	-	.	gene_id "jcn_only_AD.1360"; transcript_id "jcn_only_AD.1360"; gene_name "CUFF.1975"; flanks "52901153-,52901620-"; structure "1^,2^"; splice_chain "52901153^,52901157^"; psi "0.764468";
chr13	juncbase	intron_retention	78493532	78492759	.	-	.	gene_id "intron_retention.1291"; transcript_id "intron_retention.1291"; gene_name "CUFF.1975"; flanks "78493532-,78492759^"; structure "0,1^2-"; splice_chain ",78493532^78492759-"; psi "0.500000";
chr19	juncbase	cassette	14857708	14854596	.	-	.	gene_id "cassette.956"; transcript_id "cassette.956"; gene_name "CUFF.1975"; flanks "14857708^,14854596-"; structure "0,1-2^"; splice_chain ",14857135-14857044^"; psi "0.914900";
chr12	juncbase	jcn_only_AD	133181292	133181170	.	-	.	gene_id "jcn_only_AD.1361"; transcript_id "jcn_only_AD.1361"; gene_name "CUFF.1975"; flanks "133181292-,133181170-"; structure "1^,2^"; splice_chain "133181292^,133181287^"; psi "0.047900";
chr16	juncbase	cassette	77769883	77775479	.	-	.	gene_id "cassette.957"; transcript_id "cassette.957"; gene_name "CUFF.1975"; flanks "77769883^,77775479-"; structure "0,1-2^"; splice_chain ",77770547-77770640^"; psi "0.132400";
chr3	juncbase	jcn_only_AD	107596749	107586424	.	-	.	gene_id "jcn_only_AD.1362"; transcript_id "jcn_only_AD.1362"; gene_name "CUFF.1975"; flanks "107596749-,107586424-"; structure "1^,2^"; splice_chain "107596749^,107591815^"; psi "0.351636";
chr1	juncbase	intron_retention	166819660	166821822	.	-	.	gene_id "intron_retention.1292"; transcript_id "intron_retention.1292"; gene_name "CUFF.1975"; flanks "166819660-,166821822^"; structure "0,1^2-"; splice_chain ",166819660^166821822-"; psi "0.188400";
chr7	juncbase	jcn_only_AA	129015767	129019482	.	-	.	gene_id "jcn_only_AA.1121"; transcript_id "jcn_only_AA.1121"; gene_name "CUFF.1975"; flanks "129015767^,129019482^"; structure "1-,2-"; splice_chain "129019479-,129019482-"; psi "0.784900";
chr4	juncbase	intron_retention	99405550	99403326	.	-	.	gene_id "intron_retention.1293"; transcript_id "intron_retention.1293"; gene_name "CUFF.1975"; flanks "99405550-,99403326^"; structure "0,1^2-"; splice_chain ",99405550^99403326-"; psi "0.365900";
chr16	juncbase	jcn_only_AA	87811474	87807147	.	-	.	gene_id "jcn_only_AA.1122"; transcript_id "jcn_only_AA.1122"; gene_name "CUFF.1975"; flanks "87811474^,87807147^"; structure "1-,2-"; splice_chain "87807195-,87807147-"; psi "0.576900";
chr7	juncbase	cassette	75044512	75045259	.	-	.	gene_id "cassette.958"; transcript_id "cassette.958"; gene_name "CUFF.1975"; flanks "75044512^,75045259-"; structure "0,1-2^"; splice_chain ",75044870-75045056^"; psi "0.432600";
chr6	juncbase	jcn_only_AA	32130399	32133915	.	-	.	gene_id "jcn_only_AA.1123"; transcript_id "jcn_only_AA.1123"; gene_name "CUFF.1975"; flanks "32130399^,32133915^"; structure "1-,2-"; splice_chain "32130584-,32133915-"; psi "0.141134";
chr6	juncbase	jcn_only_AA	32130399	32132356	.	-	.	gene_id "jcn_only_AA.1124"; transcript_id "jcn_only_AA.1124"; gene_name "CUFF.1975"; flanks "32130399^,32132356^"; structure "1-,2-"; splice_chain "32130584-,32132356-"; psi "0.482257";
chr14	juncbase	jcn_only_AD	61512885	61517230	.	-	.	gene_id "jcn_only_AD.1363"; transcript_id "jcn_only_AD.1363"; gene_name "CUFF.1975"; flanks "61512885-,61517230-"; structure "1^,2^"; splice_chain "61512885^,61515015^"; psi "0.720500";
chr14	juncbase	cassette	92191424	92185822	.	-	.	gene_id "cassette.959"; transcript_id "cassette.959"; gene_name "CUFF.1975"; flanks "92191424^,92185822-"; structure "0,1-2^"; splice_chain ",92189533-92189393^"; psi "0.737600";
chrX	juncbase	cassette	78005720	78006707	.	-	.	gene_id "cassette.960"; transcript_id "cassette.960"; gene_name "CUFF.1975"; flanks "78005720^,78006707-"; structure "0,1-2^"; splice_chain ",78006227-78006289^"; psi "0.758600";
chr2	juncbase	jcn_only_AA	27670679	27670501	.	-	.	gene_id "jcn_only_AA.1125"; transcript_id "jcn_only_AA.1125"; gene_name "CUFF.1975"; flanks "27670679^,27670501^"; structure "1-,2-"; splice_chain "27670524-,27670501-"; psi "0.741900";
chr14	juncbase	cassette	71249940	71227899	.	-	.	gene_id "cassette.961"; transcript_id "cassette.961"; gene_name "CUFF.1975"; flanks "71249940^,71227899-"; structure "0,1-2^"; splice_chain ",71232204-71232159^"; psi "0.642900";
chr2	juncbase	cassette	242447421	242439696	.	-	.	gene_id "cassette.962"; transcript_id "cassette.962"; gene_name "CUFF.1975"; flanks "242447421^,242439696-"; structure "0,1-2^"; splice_chain ",242440211-242440155^"; psi "0.808500";
chr15	juncbase	jcn_only_AD	24780953	24811803	.	-	.	gene_id "jcn_only_AD.1364"; transcript_id "jcn_only_AD.1364"; gene_name "CUFF.1975"; flanks "24780953-,24811803-"; structure "1^,2^"; splice_chain "24780953^,24811359^"; psi "0.138893";
chr15	juncbase	jcn_only_AD	24803468	24811803	.	-	.	gene_id "jcn_only_AD.1365"; transcript_id "jcn_only_AD.1365"; gene_name "CUFF.1975"; flanks "24803468-,24811803-"; structure "1^,2^"; splice_chain "24803468^,24811359^"; psi "0.287323";
chr2	juncbase	intron_retention	61712903	61711240	.	-	.	gene_id "intron_retention.1294"; transcript_id "intron_retention.1294"; gene_name "CUFF.1975"; flanks "61712903-,61711240^"; structure "0,1^2-"; splice_chain ",61712903^61711240-"; psi "0.210500";
chr16	juncbase	intron_retention	4465767	4463405	.	-	.	gene_id "intron_retention.1295"; transcript_id "intron_retention.1295"; gene_name "CUFF.1975"; flanks "4465767-,4463405^"; structure "0,1^2-"; splice_chain ",4465767^4463405-"; psi "0.825700";
chr2	juncbase	jcn_only_AD	220094680	220094950	.	-	.	gene_id "jcn_only_AD.1366"; transcript_id "jcn_only_AD.1366"; gene_name "CUFF.1975"; flanks "220094680-,220094950-"; structure "1^,2^"; splice_chain "220094680^,220094702^"; psi "0.299942";
chr2	juncbase	jcn_only_AD	220094622	220094950	.	-	.	gene_id "jcn_only_AD.1367"; transcript_id "jcn_only_AD.1367"; gene_name "CUFF.1975"; flanks "220094622-,220094950-"; structure "1^,2^"; splice_chain "220094622^,220094702^"; psi "0.871445";
chr16	juncbase	intron_retention	89789242	89789545	.	-	.	gene_id "intron_retention.1296"; transcript_id "intron_retention.1296"; gene_name "CUFF.1975"; flanks "89789242-,89789545^"; structure "0,1^2-"; splice_chain ",89789242^89789545-"; psi "0.112800";
chr11	juncbase	jcn_only_AD	104972135	104915385	.	-	.	gene_id "jcn_only_AD.1368"; transcript_id "jcn_only_AD.1368"; gene_name "CUFF.1975"; flanks "104972135-,104915385-"; structure "1^,2^"; splice_chain "104972135^,104916018^"; psi "0.111149";
chr10	juncbase	jcn_only_AD	27054147	27048167	.	-	.	gene_id "jcn_only_AD.1369"; transcript_id "jcn_only_AD.1369"; gene_name "CUFF.1975"; flanks "27054147-,27048167-"; structure "1^,2^"; splice_chain "27054147^,27052809^"; psi "0.863000";
chr3	juncbase	jcn_only_AA	120400944	120394710	.	-	.	gene_id "jcn_only_AA.1126"; transcript_id "jcn_only_AA.1126"; gene_name "CUFF.1975"; flanks "120400944^,120394710^"; structure "1-,2-"; splice_chain "120396838-,120394710-"; psi "0.820615";
chr1	juncbase	cassette	2075780	2080311	.	-	.	gene_id "cassette.963"; transcript_id "cassette.963"; gene_name "CUFF.1975"; flanks "2075780^,2080311-"; structure "0,1-2^"; splice_chain ",2077466-2077547^"; psi "0.964700";
chr2	juncbase	cassette	219433701	219445284	.	-	.	gene_id "cassette.964"; transcript_id "cassette.964"; gene_name "CUFF.1975"; flanks "219433701^,219445284-"; structure "0,1-2^"; splice_chain ",219438718-219438956^"; psi "0.428000";
chrX	juncbase	jcn_only_AD	107369417	107372011	.	-	.	gene_id "jcn_only_AD.1370"; transcript_id "jcn_only_AD.1370"; gene_name "CUFF.1975"; flanks "107369417-,107372011-"; structure "1^,2^"; splice_chain "107369417^,107370324^"; psi "0.900700";
chr15	juncbase	cassette	94408877	94421263	.	-	.	gene_id "cassette.965"; transcript_id "cassette.965"; gene_name "CUFF.1975"; flanks "94408877^,94421263-"; structure "0,1-2^"; splice_chain ",94412920-94413062^"; psi "0.175400";
chr14	juncbase	jcn_only_AA	59377060	59475752	.	-	.	gene_id "jcn_only_AA.1127"; transcript_id "jcn_only_AA.1127"; gene_name "CUFF.1975"; flanks "59377060^,59475752^"; structure "1-,2-"; splice_chain "59415031-,59475752-"; psi "0.234200";
chr9	juncbase	intron_retention	35075276	35075079	.	-	.	gene_id "intron_retention.1297"; transcript_id "intron_retention.1297"; gene_name "CUFF.1975"; flanks "35075276-,35075079^"; structure "0,1^2-"; splice_chain ",35075276^35075079-"; psi "0.219300";
chr17	juncbase	jcn_only_AA	29706041	29708891	.	-	.	gene_id "jcn_only_AA.1128"; transcript_id "jcn_only_AA.1128"; gene_name "CUFF.1975"; flanks "29706041^,29708891^"; structure "1-,2-"; splice_chain "29706124-,29708891-"; psi "0.647100";
chr5	juncbase	cassette	141044489	141041356	.	-	.	gene_id "cassette.966"; transcript_id "cassette.966"; gene_name "CUFF.1975"; flanks "141044489^,141041356-"; structure "0,1-2^"; splice_chain ",141041822-141041610^"; psi "0.847100";
chr17	juncbase	intron_retention	15532188	15531375	.	-	.	gene_id "intron_retention.1298"; transcript_id "intron_retention.1298"; gene_name "CUFF.1975"; flanks "15532188-,15531375^"; structure "0,1^2-"; splice_chain ",15532188^15531375-"; psi "0.930000";
chr17	juncbase	jcn_only_AA	6353392	6353682	.	-	.	gene_id "jcn_only_AA.1129"; transcript_id "jcn_only_AA.1129"; gene_name "CUFF.1975"; flanks "6353392^,6353682^"; structure "1-,2-"; splice_chain "6353559-,6353682-"; psi "0.855700";
chr15	juncbase	cassette	66789980	66786890	.	-	.	gene_id "cassette.967"; transcript_id "cassette.967"; gene_name "CUFF.1975"; flanks "66789980^,66786890-"; structure "0,1-2^"; splice_chain ",66787757-66787241^"; psi "0.715800";
chr15	juncbase	cassette	66789828	66786890	.	-	.	gene_id "cassette.968"; transcript_id "cassette.968"; gene_name "CUFF.1975"; flanks "66789828^,66786890-"; structure "0,1-2^"; splice_chain ",66787757-66787241^"; psi "0.715800";
chr15	juncbase	jcn_only_AD	63128272	63131055	.	-	.	gene_id "jcn_only_AD.1371"; transcript_id "jcn_only_AD.1371"; gene_name "CUFF.1975"; flanks "63128272-,63131055-"; structure "1^,2^"; splice_chain "63128272^,63128317^"; psi "0.973200";
chr7	juncbase	jcn_only_AD	107211711	107215633	.	-	.	gene_id "jcn_only_AD.1372"; transcript_id "jcn_only_AD.1372"; gene_name "CUFF.1975"; flanks "107211711-,107215633-"; structure "1^,2^"; splice_chain "107211711^,107214328^"; psi "0.961766";
chr7	juncbase	jcn_only_AD	107214266	107215633	.	-	.	gene_id "jcn_only_AD.1373"; transcript_id "jcn_only_AD.1373"; gene_name "CUFF.1975"; flanks "107214266-,107215633-"; structure "1^,2^"; splice_chain "107214266^,107214328^"; psi "0.338624";
chr17	juncbase	jcn_only_AA	1616997	1615693	.	-	.	gene_id "jcn_only_AA.1130"; transcript_id "jcn_only_AA.1130"; gene_name "CUFF.1975"; flanks "1616997^,1615693^"; structure "1-,2-"; splice_chain "1616198-,1615693-"; psi "0.112099";
chr17	juncbase	jcn_only_AA	1616997	1616189	.	-	.	gene_id "jcn_only_AA.1131"; transcript_id "jcn_only_AA.1131"; gene_name "CUFF.1975"; flanks "1616997^,1616189^"; structure "1-,2-"; splice_chain "1616198-,1616189-"; psi "0.263078";
chr1	juncbase	jcn_only_AA	1656202	1667256	.	-	.	gene_id "jcn_only_AA.1132"; transcript_id "jcn_only_AA.1132"; gene_name "CUFF.1975"; flanks "1656202^,1667256^"; structure "1-,2-"; splice_chain "1661685-,1667256-"; psi "0.957700";
chr7	juncbase	intron_retention	92164284	92166165	.	-	.	gene_id "intron_retention.1299"; transcript_id "intron_retention.1299"; gene_name "CUFF.1975"; flanks "92164284-,92166165^"; structure "0,1^2-"; splice_chain ",92164284^92166165-"; psi "0.125000";
chr2	juncbase	jcn_only_AD	61763845	61761038	.	-	.	gene_id "jcn_only_AD.1374"; transcript_id "jcn_only_AD.1374"; gene_name "CUFF.1975"; flanks "61763845-,61761038-"; structure "1^,2^"; splice_chain "61763845^,61763337^"; psi "0.281780";
chr2	juncbase	jcn_only_AD	61764697	61761038	.	-	.	gene_id "jcn_only_AD.1375"; transcript_id "jcn_only_AD.1375"; gene_name "CUFF.1975"; flanks "61764697-,61761038-"; structure "1^,2^"; splice_chain "61764697^,61763337^"; psi "0.684798";
chr2	juncbase	jcn_only_AD	61764154	61761038	.	-	.	gene_id "jcn_only_AD.1376"; transcript_id "jcn_only_AD.1376"; gene_name "CUFF.1975"; flanks "61764154-,61761038-"; structure "1^,2^"; splice_chain "61764154^,61763337^"; psi "0.872148";
chr2	juncbase	jcn_only_AD	61765627	61761038	.	-	.	gene_id "jcn_only_AD.1377"; transcript_id "jcn_only_AD.1377"; gene_name "CUFF.1975"; flanks "61765627-,61761038-"; structure "1^,2^"; splice_chain "61765627^,61763337^"; psi "0.416523";
chr3	juncbase	intron_retention	8787559	8787656	.	-	.	gene_id "intron_retention.1300"; transcript_id "intron_retention.1300"; gene_name "CUFF.1975"; flanks "8787559-,8787656^"; structure "0,1^2-"; splice_chain ",8787559^8787656-"; psi "0.121500";
chr10	juncbase	intron_retention	35437419	35467817	.	-	.	gene_id "intron_retention.1301"; transcript_id "intron_retention.1301"; gene_name "CUFF.1975"; flanks "35437419-,35467817^"; structure "0,1^2-"; splice_chain ",35437419^35467817-"; psi "0.141100";
chr11	juncbase	intron_retention	62364109	62364004	.	-	.	gene_id "intron_retention.1302"; transcript_id "intron_retention.1302"; gene_name "CUFF.1975"; flanks "62364109-,62364004^"; structure "0,1^2-"; splice_chain ",62364109^62364004-"; psi "0.179800";
chr7	juncbase	jcn_only_AD	107207631	107211590	.	-	.	gene_id "jcn_only_AD.1378"; transcript_id "jcn_only_AD.1378"; gene_name "CUFF.1975"; flanks "107207631-,107211590-"; structure "1^,2^"; splice_chain "107207631^,107208310^"; psi "0.987500";
chr15	juncbase	jcn_only_AD	24825477	24869115	.	-	.	gene_id "jcn_only_AD.1379"; transcript_id "jcn_only_AD.1379"; gene_name "CUFF.1975"; flanks "24825477-,24869115-"; structure "1^,2^"; splice_chain "24825477^,24832882^"; psi "0.205100";
chrX	juncbase	jcn_only_AD	9132574	9130945	.	-	.	gene_id "jcn_only_AD.1380"; transcript_id "jcn_only_AD.1380"; gene_name "CUFF.1975"; flanks "9132574-,9130945-"; structure "1^,2^"; splice_chain "9132574^,9132334^"; psi "0.474329";
chr13	juncbase	jcn_only_AD	24463271	24460645	.	-	.	gene_id "jcn_only_AD.1381"; transcript_id "jcn_only_AD.1381"; gene_name "CUFF.1975"; flanks "24463271-,24460645-"; structure "1^,2^"; splice_chain "24463271^,24462817^"; psi "0.107100";
chr16	juncbase	cassette	70389438	70395321	.	-	.	gene_id "cassette.969"; transcript_id "cassette.969"; gene_name "CUFF.1975"; flanks "70389438^,70395321-"; structure "0,1-2^"; splice_chain ",70390015-70390150^"; psi "0.644400";
chr12	juncbase	jcn_only_AD	102811733	102796344	.	-	.	gene_id "jcn_only_AD.1382"; transcript_id "jcn_only_AD.1382"; gene_name "CUFF.1975"; flanks "102811733-,102796344-"; structure "1^,2^"; splice_chain "102811733^,102809482^"; psi "0.413326";
chr12	juncbase	jcn_only_AD	102813287	102796344	.	-	.	gene_id "jcn_only_AD.1383"; transcript_id "jcn_only_AD.1383"; gene_name "CUFF.1975"; flanks "102813287-,102796344-"; structure "1^,2^"; splice_chain "102813287^,102809482^"; psi "0.183690";
chr3	juncbase	cassette	107575927	107574076	.	-	.	gene_id "cassette.970"; transcript_id "cassette.970"; gene_name "CUFF.1975"; flanks "107575927^,107574076-"; structure "0,1-2^"; splice_chain ",107575171-107574855^"; psi "0.299200";
chr11	juncbase	cassette	2188665	2187779	.	-	.	gene_id "cassette.971"; transcript_id "cassette.971"; gene_name "CUFF.1975"; flanks "2188665^,2187779-"; structure "0,1-2^"; splice_chain ",2187998-2187863^"; psi "0.653100";
chr17	juncbase	cassette	79892802	79892365	.	-	.	gene_id "cassette.972"; transcript_id "cassette.972"; gene_name "CUFF.1975"; flanks "79892802^,79892365-"; structure "0,1-2^"; splice_chain ",79892621-79892529^"; psi "0.816800";
chr17	juncbase	cassette	79892802	79891252	.	-	.	gene_id "cassette.973"; transcript_id "cassette.973"; gene_name "CUFF.1975"; flanks "79892802^,79891252-"; structure "0,1-2^"; splice_chain ",79892621-79892529^"; psi "0.816800";
chr16	juncbase	cassette	70390150	70398920	.	-	.	gene_id "cassette.974"; transcript_id "cassette.974"; gene_name "CUFF.1975"; flanks "70390150^,70398920-"; structure "0,1-2^"; splice_chain ",70398446-70398548^"; psi "0.621100";
chr4	juncbase	cassette	108109584	107847106	.	-	.	gene_id "cassette.975"; transcript_id "cassette.975"; gene_name "CUFF.1975"; flanks "108109584^,107847106-"; structure "0,1-2^"; splice_chain ",108049166-108049099^"; psi "0.983100";
chr2	juncbase	intron_retention	166731189	166727530	.	-	.	gene_id "intron_retention.1303"; transcript_id "intron_retention.1303"; gene_name "CUFF.1975"; flanks "166731189-,166727530^"; structure "0,1^2-"; splice_chain ",166731189^166727530-"; psi "0.587200";
chr19	juncbase	cassette	8154983	8154554	.	-	.	gene_id "cassette.976"; transcript_id "cassette.976"; gene_name "CUFF.1975"; flanks "8154983^,8154554-"; structure "0,1-2^"; splice_chain ",8154843-8154778^"; psi "0.947100";
chr18	juncbase	jcn_only_AD	61377595	61390229	.	-	.	gene_id "jcn_only_AD.1384"; transcript_id "jcn_only_AD.1384"; gene_name "CUFF.1975"; flanks "61377595-,61390229-"; structure "1^,2^"; splice_chain "61377595^,61388220^"; psi "0.079800";
chr9	juncbase	intron_retention	139743232	139743563	.	-	.	gene_id "intron_retention.1304"; transcript_id "intron_retention.1304"; gene_name "CUFF.1975"; flanks "139743232-,139743563^"; structure "0,1^2-"; splice_chain ",139743232^139743563-"; psi "0.582100";
chr1	juncbase	intron_retention	158585006	158584096	.	-	.	gene_id "intron_retention.1305"; transcript_id "intron_retention.1305"; gene_name "CUFF.1975"; flanks "158585006-,158584096^"; structure "0,1^2-"; splice_chain ",158585006^158584096-"; psi "0.209300";
chr2	juncbase	jcn_only_AD	1133495	1161234	.	-	.	gene_id "jcn_only_AD.1385"; transcript_id "jcn_only_AD.1385"; gene_name "CUFF.1975"; flanks "1133495-,1161234-"; structure "1^,2^"; splice_chain "1133495^,1158975^"; psi "0.734290";
chrX	juncbase	cassette	15353623	15344168	.	-	.	gene_id "cassette.977"; transcript_id "cassette.977"; gene_name "CUFF.1975"; flanks "15353623^,15344168-"; structure "0,1-2^"; splice_chain ",15350114-15349712^"; psi "0.902900";
chr3	juncbase	intron_retention	38049726	38049654	.	-	.	gene_id "intron_retention.1306"; transcript_id "intron_retention.1306"; gene_name "CUFF.1975"; flanks "38049726-,38049654^"; structure "0,1^2-"; splice_chain ",38049726^38049654-"; psi "0.056000";
chr11	juncbase	intron_retention	10829292	10828928	.	-	.	gene_id "intron_retention.1307"; transcript_id "intron_retention.1307"; gene_name "CUFF.1975"; flanks "10829292-,10828928^"; structure "0,1^2-"; splice_chain ",10829292^10828928-"; psi "0.955800";
chr2	juncbase	intron_retention	235404656	235404480	.	-	.	gene_id "intron_retention.1308"; transcript_id "intron_retention.1308"; gene_name "CUFF.1975"; flanks "235404656-,235404480^"; structure "0,1^2-"; splice_chain ",235404656^235404480-"; psi "0.370800";
chr15	juncbase	cassette	83725141	83710677	.	-	.	gene_id "cassette.978"; transcript_id "cassette.978"; gene_name "CUFF.1975"; flanks "83725141^,83710677-"; structure "0,1-2^"; splice_chain ",83718930-83718825^"; psi "0.523100";
chr1	juncbase	jcn_only_AD	1982140	1986880	.	-	.	gene_id "jcn_only_AD.1386"; transcript_id "jcn_only_AD.1386"; gene_name "CUFF.1975"; flanks "1982140-,1986880-"; structure "1^,2^"; splice_chain "1982140^,1982451^"; psi "0.929200";
chr2	juncbase	intron_retention	177042743	177042222	.	-	.	gene_id "intron_retention.1309"; transcript_id "intron_retention.1309"; gene_name "CUFF.1975"; flanks "177042743-,177042222^"; structure "0,1^2-"; splice_chain ",177042743^177042222-"; psi "0.445300";
chr6	juncbase	jcn_only_AD	128330275	128327200	.	-	.	gene_id "jcn_only_AD.1387"; transcript_id "jcn_only_AD.1387"; gene_name "CUFF.1975"; flanks "128330275-,128327200-"; structure "1^,2^"; splice_chain "128330275^,128329191^"; psi "0.881800";
chr2	juncbase	jcn_only_AA	86839282	86831601	.	-	.	gene_id "jcn_only_AA.1133"; transcript_id "jcn_only_AA.1133"; gene_name "CUFF.1975"; flanks "86839282^,86831601^"; structure "1-,2-"; splice_chain "86832541-,86831601-"; psi "0.315000";
chr3	juncbase	intron_retention	73433800	73432956	.	-	.	gene_id "intron_retention.1310"; transcript_id "intron_retention.1310"; gene_name "CUFF.1975"; flanks "73433800-,73432956^"; structure "0,1^2-"; splice_chain ",73433800^73432956-"; psi "0.965300";
chr7	juncbase	jcn_only_AD	150783096	150813880	.	-	.	gene_id "jcn_only_AD.1388"; transcript_id "jcn_only_AD.1388"; gene_name "CUFF.1975"; flanks "150783096-,150813880-"; structure "1^,2^"; splice_chain "150783096^,150783147^"; psi "0.363949";
chr2	juncbase	jcn_only_AA	27731118	27741655	.	-	.	gene_id "jcn_only_AA.1134"; transcript_id "jcn_only_AA.1134"; gene_name "CUFF.1975"; flanks "27731118^,27741655^"; structure "1-,2-"; splice_chain "27732394-,27741655-"; psi "0.807100";
chr12	juncbase	intron_retention	11461583	11461375	.	-	.	gene_id "intron_retention.1311"; transcript_id "intron_retention.1311"; gene_name "CUFF.1975"; flanks "11461583-,11461375^"; structure "0,1^2-"; splice_chain ",11461583^11461375-"; psi "0.242500";
chr2	juncbase	intron_retention	61765273	61764722	.	-	.	gene_id "intron_retention.1312"; transcript_id "intron_retention.1312"; gene_name "CUFF.1975"; flanks "61765273-,61764722^"; structure "0,1^2-"; splice_chain ",61765273^61764722-"; psi "0.473700";
chr1	juncbase	cassette	202863312	202861787	.	-	.	gene_id "cassette.979"; transcript_id "cassette.979"; gene_name "CUFF.1975"; flanks "202863312^,202861787-"; structure "0,1-2^"; splice_chain ",202862553-202862367^"; psi "0.882400";
chr16	juncbase	intron_retention	3117614	3118181	.	-	.	gene_id "intron_retention.1313"; transcript_id "intron_retention.1313"; gene_name "CUFF.1975"; flanks "3117614-,3118181^"; structure "0,1^2-"; splice_chain ",3117614^3118181-"; psi "0.925100";
chr15	juncbase	cassette	50838670	50831048	.	-	.	gene_id "cassette.980"; transcript_id "cassette.980"; gene_name "CUFF.1975"; flanks "50838670^,50831048-"; structure "0,1-2^"; splice_chain ",50833461-50833246^"; psi "0.187400";
chr18	juncbase	intron_retention	56001124	56008270	.	-	.	gene_id "intron_retention.1314"; transcript_id "intron_retention.1314"; gene_name "CUFF.1975"; flanks "56001124-,56008270^"; structure "0,1^2-"; splice_chain ",56001124^56008270-"; psi "0.252900";
chr19	juncbase	jcn_only_AA	49337533	49335989	.	-	.	gene_id "jcn_only_AA.1135"; transcript_id "jcn_only_AA.1135"; gene_name "CUFF.1975"; flanks "49337533^,49335989^"; structure "1-,2-"; splice_chain "49336009-,49335989-"; psi "0.702400";
chr19	juncbase	jcn_only_AD	16187507	16192723	.	-	.	gene_id "jcn_only_AD.1389"; transcript_id "jcn_only_AD.1389"; gene_name "CUFF.1975"; flanks "16187507-,16192723-"; structure "1^,2^"; splice_chain "16187507^,16191885^"; psi "0.244928";
chr19	juncbase	jcn_only_AD	16191252	16192723	.	-	.	gene_id "jcn_only_AD.1390"; transcript_id "jcn_only_AD.1390"; gene_name "CUFF.1975"; flanks "16191252-,16192723-"; structure "1^,2^"; splice_chain "16191252^,16191885^"; psi "0.259943";
chr19	juncbase	jcn_only_AD	16186982	16192723	.	-	.	gene_id "jcn_only_AD.1391"; transcript_id "jcn_only_AD.1391"; gene_name "CUFF.1975"; flanks "16186982-,16192723-"; structure "1^,2^"; splice_chain "16186982^,16191885^"; psi "0.522992";
chr15	juncbase	intron_retention	83357488	83350332	.	-	.	gene_id "intron_retention.1315"; transcript_id "intron_retention.1315"; gene_name "CUFF.1975"; flanks "83357488-,83350332^"; structure "0,1^2-"; splice_chain ",83357488^83350332-"; psi "0.392700";
chr22	juncbase	jcn_only_AA	29668420	29669730	.	-	.	gene_id "jcn_only_AA.1136"; transcript_id "jcn_only_AA.1136"; gene_name "CUFF.1975"; flanks "29668420^,29669730^"; structure "1-,2-"; splice_chain "29669727-,29669730-"; psi "0.746257";
chr22	juncbase	jcn_only_AA	29668420	29674120	.	-	.	gene_id "jcn_only_AA.1137"; transcript_id "jcn_only_AA.1137"; gene_name "CUFF.1975"; flanks "29668420^,29674120^"; structure "1-,2-"; splice_chain "29669727-,29674120-"; psi "0.346098";
chr19	juncbase	jcn_only_AA	12917893	12918021	.	-	.	gene_id "jcn_only_AA.1138"; transcript_id "jcn_only_AA.1138"; gene_name "CUFF.1975"; flanks "12917893^,12918021^"; structure "1-,2-"; splice_chain "12918020-,12918021-"; psi "0.000200";
chr4	juncbase	jcn_only_AD	3957051	3954900	.	-	.	gene_id "jcn_only_AD.1392"; transcript_id "jcn_only_AD.1392"; gene_name "CUFF.1975"; flanks "3957051-,3954900-"; structure "1^,2^"; splice_chain "3957051^,3956687^"; psi "0.774900";
chr20	juncbase	cassette	30154098	30156923	.	-	.	gene_id "cassette.981"; transcript_id "cassette.981"; gene_name "CUFF.1975"; flanks "30154098^,30156923-"; structure "0,1-2^"; splice_chain ",30155881-30156083^"; psi "0.113000";
chr2	juncbase	jcn_only_AA	4021135	4009393	.	-	.	gene_id "jcn_only_AA.1139"; transcript_id "jcn_only_AA.1139"; gene_name "CUFF.1975"; flanks "4021135^,4009393^"; structure "1-,2-"; splice_chain "4009484-,4009393-"; psi "0.580401";
chr5	juncbase	jcn_only_AA	139918668	139921757	.	-	.	gene_id "jcn_only_AA.1140"; transcript_id "jcn_only_AA.1140"; gene_name "CUFF.1975"; flanks "139918668^,139921757^"; structure "1-,2-"; splice_chain "139918944-,139921757-"; psi "0.056900";
chr1	juncbase	cassette	245133745	245222688	.	-	.	gene_id "cassette.982"; transcript_id "cassette.982"; gene_name "CUFF.1975"; flanks "245133745^,245222688-"; structure "0,1-2^"; splice_chain ",245180544-245180628^"; psi "0.916500";
chr1	juncbase	cassette	245165534	245222688	.	-	.	gene_id "cassette.983"; transcript_id "cassette.983"; gene_name "CUFF.1975"; flanks "245165534^,245222688-"; structure "0,1-2^"; splice_chain ",245180544-245180628^"; psi "0.916500";
chr5	juncbase	intron_retention	178045557	178043949	.	-	.	gene_id "intron_retention.1316"; transcript_id "intron_retention.1316"; gene_name "CUFF.1975"; flanks "178045557-,178043949^"; structure "0,1^2-"; splice_chain ",178045557^178043949-"; psi "0.506200";
chr1	juncbase	jcn_only_AD	156450626	156449588	.	-	.	gene_id "jcn_only_AD.1393"; transcript_id "jcn_only_AD.1393"; gene_name "CUFF.1975"; flanks "156450626-,156449588-"; structure "1^,2^"; splice_chain "156450626^,156450435^"; psi "0.357100";
chr16	juncbase	intron_retention	66613601	66614042	.	-	.	gene_id "intron_retention.1317"; transcript_id "intron_retention.1317"; gene_name "CUFF.1975"; flanks "66613601-,66614042^"; structure "0,1^2-"; splice_chain ",66613601^66614042-"; psi "0.154700";
chr6	juncbase	cassette	116981899	116980087	.	-	.	gene_id "cassette.984"; transcript_id "cassette.984"; gene_name "CUFF.1975"; flanks "116981899^,116980087-"; structure "0,1-2^"; splice_chain ",116981532-116981396^"; psi "0.325600";
chr11	juncbase	jcn_only_AD	10829721	10828928	.	-	.	gene_id "jcn_only_AD.1394"; transcript_id "jcn_only_AD.1394"; gene_name "CUFF.1975"; flanks "10829721-,10828928-"; structure "1^,2^"; splice_chain "10829721^,10829096^"; psi "0.875116";
chr11	juncbase	jcn_only_AD	10829292	10828928	.	-	.	gene_id "jcn_only_AD.1395"; transcript_id "jcn_only_AD.1395"; gene_name "CUFF.1975"; flanks "10829292-,10828928-"; structure "1^,2^"; splice_chain "10829292^,10829096^"; psi "0.844051";
chr11	juncbase	jcn_only_AA	119252183	119230944	.	-	.	gene_id "jcn_only_AA.1141"; transcript_id "jcn_only_AA.1141"; gene_name "CUFF.1975"; flanks "119252183^,119230944^"; structure "1-,2-"; splice_chain "119244231-,119230944-"; psi "0.600000";
chr1	juncbase	intron_retention	155180418	155182176	.	-	.	gene_id "intron_retention.1318"; transcript_id "intron_retention.1318"; gene_name "CUFF.1975"; flanks "155180418-,155182176^"; structure "0,1^2-"; splice_chain ",155180418^155182176-"; psi "0.470600";
chr11	juncbase	jcn_only_AD	119056219	119056631	.	-	.	gene_id "jcn_only_AD.1396"; transcript_id "jcn_only_AD.1396"; gene_name "CUFF.1975"; flanks "119056219-,119056631-"; structure "1^,2^"; splice_chain "119056219^,119056337^"; psi "0.837200";
chr2	juncbase	cassette	11605898	11593924	.	-	.	gene_id "cassette.985"; transcript_id "cassette.985"; gene_name "CUFF.1975"; flanks "11605898^,11593924-"; structure "0,1-2^"; splice_chain ",11597359-11597305^"; psi "0.873500";
chr1	juncbase	jcn_only_AA	53883200	53878940	.	-	.	gene_id "jcn_only_AA.1142"; transcript_id "jcn_only_AA.1142"; gene_name "CUFF.1975"; flanks "53883200^,53878940^"; structure "1-,2-"; splice_chain "53881196-,53878940-"; psi "0.500000";
chr16	juncbase	intron_retention	57521158	57513600	.	-	.	gene_id "intron_retention.1319"; transcript_id "intron_retention.1319"; gene_name "CUFF.1975"; flanks "57521158-,57513600^"; structure "0,1^2-"; splice_chain ",57521158^57513600-"; psi "0.575900";
chr9	juncbase	jcn_only_AA	15267912	15211395	.	-	.	gene_id "jcn_only_AA.1143"; transcript_id "jcn_only_AA.1143"; gene_name "CUFF.1975"; flanks "15267912^,15211395^"; structure "1-,2-"; splice_chain "15226010-,15211395-"; psi "0.026474";
chr3	juncbase	cassette	49318177	49315884	.	-	.	gene_id "cassette.986"; transcript_id "cassette.986"; gene_name "CUFF.1975"; flanks "49318177^,49315884-"; structure "0,1-2^"; splice_chain ",49316335-49316247^"; psi "0.968100";
chr1	juncbase	jcn_only_AD	41487295	41486605	.	-	.	gene_id "jcn_only_AD.1397"; transcript_id "jcn_only_AD.1397"; gene_name "CUFF.1975"; flanks "41487295-,41486605-"; structure "1^,2^"; splice_chain "41487295^,41487202^"; psi "0.387300";
chr16	juncbase	intron_retention	4405287	4405164	.	-	.	gene_id "intron_retention.1320"; transcript_id "intron_retention.1320"; gene_name "CUFF.1975"; flanks "4405287-,4405164^"; structure "0,1^2-"; splice_chain ",4405287^4405164-"; psi "0.170500";
chr7	juncbase	jcn_only_AD	102462487	102453978	.	-	.	gene_id "jcn_only_AD.1398"; transcript_id "jcn_only_AD.1398"; gene_name "CUFF.1975"; flanks "102462487-,102453978-"; structure "1^,2^"; splice_chain "102462487^,102454781^"; psi "0.818800";
chr16	juncbase	intron_retention	3118011	3118181	.	-	.	gene_id "intron_retention.1321"; transcript_id "intron_retention.1321"; gene_name "CUFF.1975"; flanks "3118011-,3118181^"; structure "0,1^2-"; splice_chain ",3118011^3118181-"; psi "0.031400";
chr16	juncbase	intron_retention	31368422	31368655	.	-	.	gene_id "intron_retention.1322"; transcript_id "intron_retention.1322"; gene_name "CUFF.1975"; flanks "31368422-,31368655^"; structure "0,1^2-"; splice_chain ",31368422^31368655-"; psi "0.172900";
chr1	juncbase	intron_retention	54360028	54360112	.	-	.	gene_id "intron_retention.1323"; transcript_id "intron_retention.1323"; gene_name "CUFF.1975"; flanks "54360028-,54360112^"; structure "0,1^2-"; splice_chain ",54360028^54360112-"; psi "0.472500";
chr2	juncbase	cassette	169699627	169707594	.	-	.	gene_id "cassette.987"; transcript_id "cassette.987"; gene_name "CUFF.1975"; flanks "169699627^,169707594-"; structure "0,1-2^"; splice_chain ",169707346-169707516^"; psi "0.053400";
chr16	juncbase	jcn_only_AA	19580913	19584446	.	-	.	gene_id "jcn_only_AA.1144"; transcript_id "jcn_only_AA.1144"; gene_name "CUFF.1975"; flanks "19580913^,19584446^"; structure "1-,2-"; splice_chain "19584441-,19584446-"; psi "0.284200";
chr17	juncbase	jcn_only_AA	18604758	18625550	.	-	.	gene_id "jcn_only_AA.1145"; transcript_id "jcn_only_AA.1145"; gene_name "CUFF.1975"; flanks "18604758^,18625550^"; structure "1-,2-"; splice_chain "18607932-,18625550-"; psi "0.428600";
chr10	juncbase	jcn_only_AA	73862608	73857208	.	-	.	gene_id "jcn_only_AA.1146"; transcript_id "jcn_only_AA.1146"; gene_name "CUFF.1975"; flanks "73862608^,73857208^"; structure "1-,2-"; splice_chain "73862170-,73857208-"; psi "0.294100";
chr11	juncbase	intron_retention	10828857	10827571	.	-	.	gene_id "intron_retention.1324"; transcript_id "intron_retention.1324"; gene_name "CUFF.1975"; flanks "10828857-,10827571^"; structure "0,1^2-"; splice_chain ",10828857^10827571-"; psi "0.911000";
chr7	juncbase	jcn_only_AD	91732140	91739436	.	-	.	gene_id "jcn_only_AD.1399"; transcript_id "jcn_only_AD.1399"; gene_name "CUFF.1975"; flanks "91732140-,91739436-"; structure "1^,2^"; splice_chain "91732140^,91737947^"; psi "0.318200";
chr2	juncbase	cassette	160619504	160623795	.	-	.	gene_id "cassette.988"; transcript_id "cassette.988"; gene_name "CUFF.1975"; flanks "160619504^,160623795-"; structure "0,1-2^"; splice_chain ",160621137-160621185^"; psi "0.274300";
chr2	juncbase	jcn_only_AA	234160	231191	.	-	.	gene_id "jcn_only_AA.1147"; transcript_id "jcn_only_AA.1147"; gene_name "CUFF.1975"; flanks "234160^,231191^"; structure "1-,2-"; splice_chain "233229-,231191-"; psi "0.562800";
chr17	juncbase	intron_retention	29686033	29687505	.	-	.	gene_id "intron_retention.1325"; transcript_id "intron_retention.1325"; gene_name "CUFF.1975"; flanks "29686033-,29687505^"; structure "0,1^2-"; splice_chain ",29686033^29687505-"; psi "0.025600";
chr5	juncbase	intron_retention	137514891	137515349	.	-	.	gene_id "intron_retention.1326"; transcript_id "intron_retention.1326"; gene_name "CUFF.1975"; flanks "137514891-,137515349^"; structure "0,1^2-"; splice_chain ",137514891^137515349-"; psi "0.411000";
chr16	juncbase	jcn_only_AA	19576272	19580746	.	-	.	gene_id "jcn_only_AA.1148"; transcript_id "jcn_only_AA.1148"; gene_name "CUFF.1975"; flanks "19576272^,19580746^"; structure "1-,2-"; splice_chain "19580566-,19580746-"; psi "0.793700";
chr16	juncbase	cassette	3194325	3194744	.	-	.	gene_id "cassette.989"; transcript_id "cassette.989"; gene_name "CUFF.1975"; flanks "3194325^,3194744-"; structure "0,1-2^"; splice_chain ",3194454-3194648^"; psi "0.677200";
chr16	juncbase	cassette	56370772	56388778	.	-	.	gene_id "cassette.990"; transcript_id "cassette.990"; gene_name "CUFF.1975"; flanks "56370772^,56388778-"; structure "0,1-2^"; splice_chain ",56385296-56385449^"; psi "0.446800";
chr19	juncbase	intron_retention	41944140	41942377	.	-	.	gene_id "intron_retention.1327"; transcript_id "intron_retention.1327"; gene_name "CUFF.1975"; flanks "41944140-,41942377^"; structure "0,1^2-"; splice_chain ",41944140^41942377-"; psi "0.632700";
chr7	juncbase	intron_retention	150815431	150815561	.	-	.	gene_id "intron_retention.1328"; transcript_id "intron_retention.1328"; gene_name "CUFF.1975"; flanks "150815431-,150815561^"; structure "0,1^2-"; splice_chain ",150815431^150815561-"; psi "0.276200";
chr17	juncbase	jcn_only_AA	57784732	57756905	.	-	.	gene_id "jcn_only_AA.1149"; transcript_id "jcn_only_AA.1149"; gene_name "CUFF.1975"; flanks "57784732^,57756905^"; structure "1-,2-"; splice_chain "57775339-,57756905-"; psi "0.966297";
chr3	juncbase	intron_retention	46964819	46963802	.	-	.	gene_id "intron_retention.1329"; transcript_id "intron_retention.1329"; gene_name "CUFF.1975"; flanks "46964819-,46963802^"; structure "0,1^2-"; splice_chain ",46964819^46963802-"; psi "0.409400";
chr3	juncbase	jcn_only_AD	186660215	186681573	.	-	.	gene_id "jcn_only_AD.1400"; transcript_id "jcn_only_AD.1400"; gene_name "CUFF.1975"; flanks "186660215-,186681573-"; structure "1^,2^"; splice_chain "186660215^,186666726^"; psi "0.911268";
chr3	juncbase	jcn_only_AD	186649183	186681573	.	-	.	gene_id "jcn_only_AD.1401"; transcript_id "jcn_only_AD.1401"; gene_name "CUFF.1975"; flanks "186649183-,186681573-"; structure "1^,2^"; splice_chain "186649183^,186666726^"; psi "0.770909";
chr3	juncbase	jcn_only_AD	186648623	186681573	.	-	.	gene_id "jcn_only_AD.1402"; transcript_id "jcn_only_AD.1402"; gene_name "CUFF.1975"; flanks "186648623-,186681573-"; structure "1^,2^"; splice_chain "186648623^,186666726^"; psi "0.981292";
chr3	juncbase	jcn_only_AD	186648927	186681573	.	-	.	gene_id "jcn_only_AD.1403"; transcript_id "jcn_only_AD.1403"; gene_name "CUFF.1975"; flanks "186648927-,186681573-"; structure "1^,2^"; splice_chain "186648927^,186666726^"; psi "0.924641";
chr7	juncbase	intron_retention	75045308	75045381	.	-	.	gene_id "intron_retention.1330"; transcript_id "intron_retention.1330"; gene_name "CUFF.1975"; flanks "75045308-,75045381^"; structure "0,1^2-"; splice_chain ",75045308^75045381-"; psi "0.289500";
chr3	juncbase	cassette	165555102	165504099	.	-	.	gene_id "cassette.991"; transcript_id "cassette.991"; gene_name "CUFF.1975"; flanks "165555102^,165504099-"; structure "0,1-2^"; splice_chain ",165548829-165547305^"; psi "0.291300";
chr10	juncbase	jcn_only_AA	17659082	17646046	.	-	.	gene_id "jcn_only_AA.1150"; transcript_id "jcn_only_AA.1150"; gene_name "CUFF.1975"; flanks "17659082^,17646046^"; structure "1-,2-"; splice_chain "17657963-,17646046-"; psi "0.659600";
chr16	juncbase	cassette	15177370	15170507	.	-	.	gene_id "cassette.992"; transcript_id "cassette.992"; gene_name "CUFF.1975"; flanks "15177370^,15170507-"; structure "0,1-2^"; splice_chain ",15173953-15173855^"; psi "0.725800";
chr3	juncbase	jcn_only_AA	28333445	28357824	.	-	.	gene_id "jcn_only_AA.1151"; transcript_id "jcn_only_AA.1151"; gene_name "CUFF.1975"; flanks "28333445^,28357824^"; structure "1-,2-"; splice_chain "28334227-,28357824-"; psi "0.500000";
chr9	juncbase	intron_retention	131486273	131485018	.	-	.	gene_id "intron_retention.1331"; transcript_id "intron_retention.1331"; gene_name "CUFF.1975"; flanks "131486273-,131485018^"; structure "0,1^2-"; splice_chain ",131486273^131485018-"; psi "0.094900";
chr14	juncbase	jcn_only_AA	75179636	75152363	.	-	.	gene_id "jcn_only_AA.1152"; transcript_id "jcn_only_AA.1152"; gene_name "CUFF.1975"; flanks "75179636^,75152363^"; structure "1-,2-"; splice_chain "75159031-,75152363-"; psi "0.086745";
chr9	juncbase	cassette	43908523	43915826	.	-	.	gene_id "cassette.993"; transcript_id "cassette.993"; gene_name "CUFF.1975"; flanks "43908523^,43915826-"; structure "0,1-2^"; splice_chain ",43915360-43915590^"; psi "0.500000";
chr11	juncbase	intron_retention	118402586	118402812	.	-	.	gene_id "intron_retention.1332"; transcript_id "intron_retention.1332"; gene_name "CUFF.1975"; flanks "118402586-,118402812^"; structure "0,1^2-"; splice_chain ",118402586^118402812-"; psi "0.372100";
chr3	juncbase	jcn_only_AA	19992553	20017093	.	-	.	gene_id "jcn_only_AA.1153"; transcript_id "jcn_only_AA.1153"; gene_name "CUFF.1975"; flanks "19992553^,20017093^"; structure "1-,2-"; splice_chain "20012040-,20017093-"; psi "0.714390";
chr3	juncbase	jcn_only_AA	19992553	20017135	.	-	.	gene_id "jcn_only_AA.1154"; transcript_id "jcn_only_AA.1154"; gene_name "CUFF.1975"; flanks "19992553^,20017135^"; structure "1-,2-"; splice_chain "20012040-,20017135-"; psi "0.228346";
chr3	juncbase	jcn_only_AA	19992553	20017079	.	-	.	gene_id "jcn_only_AA.1155"; transcript_id "jcn_only_AA.1155"; gene_name "CUFF.1975"; flanks "19992553^,20017079^"; structure "1-,2-"; splice_chain "20012040-,20017079-"; psi "0.899577";
chr3	juncbase	cassette	107572720	107567965	.	-	.	gene_id "cassette.994"; transcript_id "cassette.994"; gene_name "CUFF.1975"; flanks "107572720^,107567965-"; structure "0,1-2^"; splice_chain ",107568818-107568670^"; psi "0.199400";
chr10	juncbase	jcn_only_AA	27054147	27048167	.	-	.	gene_id "jcn_only_AA.1156"; transcript_id "jcn_only_AA.1156"; gene_name "CUFF.1975"; flanks "27054147^,27048167^"; structure "1-,2-"; splice_chain "27052889-,27048167-"; psi "0.843800";
chr2	juncbase	jcn_only_AD	200472850	200493787	.	-	.	gene_id "jcn_only_AD.1404"; transcript_id "jcn_only_AD.1404"; gene_name "CUFF.1975"; flanks "200472850-,200493787-"; structure "1^,2^"; splice_chain "200472850^,200489319^"; psi "0.900900";
chr8	juncbase	jcn_only_AA	74888196	74890991	.	-	.	gene_id "jcn_only_AA.1157"; transcript_id "jcn_only_AA.1157"; gene_name "CUFF.1975"; flanks "74888196^,74890991^"; structure "1-,2-"; splice_chain "74888540-,74890991-"; psi "0.957800";
chr12	juncbase	jcn_only_AA	113599075	113596914	.	-	.	gene_id "jcn_only_AA.1158"; transcript_id "jcn_only_AA.1158"; gene_name "CUFF.1975"; flanks "113599075^,113596914^"; structure "1-,2-"; splice_chain "113596917-,113596914-"; psi "0.041500";
chr9	juncbase	cassette	46662448	46661548	.	-	.	gene_id "cassette.995"; transcript_id "cassette.995"; gene_name "CUFF.1975"; flanks "46662448^,46661548-"; structure "0,1-2^"; splice_chain ",46661860-46661771^"; psi "0.275000";
chr17	juncbase	intron_retention	25969374	25972887	.	-	.	gene_id "intron_retention.1333"; transcript_id "intron_retention.1333"; gene_name "CUFF.1975"; flanks "25969374-,25972887^"; structure "0,1^2-"; splice_chain ",25969374^25972887-"; psi "0.069000";
chr19	juncbase	cassette	41944123	41939578	.	-	.	gene_id "cassette.996"; transcript_id "cassette.996"; gene_name "CUFF.1975"; flanks "41944123^,41939578-"; structure "0,1-2^"; splice_chain ",41942377-41942297^"; psi "0.444800";
chr16	juncbase	jcn_only_AA	4411986	4411470	.	-	.	gene_id "jcn_only_AA.1159"; transcript_id "jcn_only_AA.1159"; gene_name "CUFF.1975"; flanks "4411986^,4411470^"; structure "1-,2-"; splice_chain "4411804-,4411470-"; psi "0.802000";
chr5	juncbase	jcn_only_AA	121358102	121411010	.	-	.	gene_id "jcn_only_AA.1160"; transcript_id "jcn_only_AA.1160"; gene_name "CUFF.1975"; flanks "121358102^,121411010^"; structure "1-,2-"; splice_chain "121362637-,121411010-"; psi "0.810800";
chr14	juncbase	jcn_only_AD	58899175	58909424	.	-	.	gene_id "jcn_only_AD.1405"; transcript_id "jcn_only_AD.1405"; gene_name "CUFF.1975"; flanks "58899175-,58909424-"; structure "1^,2^"; splice_chain "58899175^,58908061^"; psi "0.863068";
chr14	juncbase	jcn_only_AD	58906878	58909424	.	-	.	gene_id "jcn_only_AD.1406"; transcript_id "jcn_only_AD.1406"; gene_name "CUFF.1975"; flanks "58906878-,58909424-"; structure "1^,2^"; splice_chain "58906878^,58908061^"; psi "0.335925";
chr15	juncbase	intron_retention	64444941	64445444	.	-	.	gene_id "intron_retention.1334"; transcript_id "intron_retention.1334"; gene_name "CUFF.1975"; flanks "64444941-,64445444^"; structure "0,1^2-"; splice_chain ",64444941^64445444-"; psi "0.069300";
chr7	juncbase	jcn_only_AD	156685622	156629579	.	-	.	gene_id "jcn_only_AD.1407"; transcript_id "jcn_only_AD.1407"; gene_name "CUFF.1975"; flanks "156685622-,156629579-"; structure "1^,2^"; splice_chain "156685622^,156685164^"; psi "0.975200";
chr9	juncbase	intron_retention	34991413	34993197	.	-	.	gene_id "intron_retention.1335"; transcript_id "intron_retention.1335"; gene_name "CUFF.1975"; flanks "34991413-,34993197^"; structure "0,1^2-"; splice_chain ",34991413^34993197-"; psi "0.405100";
chr5	juncbase	jcn_only_AA	39521729	39524365	.	-	.	gene_id "jcn_only_AA.1161"; transcript_id "jcn_only_AA.1161"; gene_name "CUFF.1975"; flanks "39521729^,39524365^"; structure "1-,2-"; splice_chain "39524353-,39524365-"; psi "0.250000";
chr14	juncbase	jcn_only_AA	61518649	61518759	.	-	.	gene_id "jcn_only_AA.1162"; transcript_id "jcn_only_AA.1162"; gene_name "CUFF.1975"; flanks "61518649^,61518759^"; structure "1-,2-"; splice_chain "61518724-,61518759-"; psi "0.666700";
chr3	juncbase	jcn_only_AD	125635562	125637707	.	-	.	gene_id "jcn_only_AD.1408"; transcript_id "jcn_only_AD.1408"; gene_name "CUFF.1975"; flanks "125635562-,125637707-"; structure "1^,2^"; splice_chain "125635562^,125635660^"; psi "0.931800";
chr6	juncbase	intron_retention	112375364	112375538	.	-	.	gene_id "intron_retention.1336"; transcript_id "intron_retention.1336"; gene_name "CUFF.1975"; flanks "112375364-,112375538^"; structure "0,1^2-"; splice_chain ",112375364^112375538-"; psi "0.105300";
chr14	juncbase	cassette	24563463	24566101	.	-	.	gene_id "cassette.997"; transcript_id "cassette.997"; gene_name "CUFF.1975"; flanks "24563463^,24566101-"; structure "0,1-2^"; splice_chain ",24563975-24564054^"; psi "0.571700";
chr14	juncbase	cassette	24563643	24566101	.	-	.	gene_id "cassette.998"; transcript_id "cassette.998"; gene_name "CUFF.1975"; flanks "24563643^,24566101-"; structure "0,1-2^"; splice_chain ",24563975-24564054^"; psi "0.571700";
chr3	juncbase	jcn_only_AA	28357914	28361000	.	-	.	gene_id "jcn_only_AA.1163"; transcript_id "jcn_only_AA.1163"; gene_name "CUFF.1975"; flanks "28357914^,28361000^"; structure "1-,2-"; splice_chain "28360223-,28361000-"; psi "0.959644";
chr7	juncbase	intron_retention	44247797	44250622	.	-	.	gene_id "intron_retention.1337"; transcript_id "intron_retention.1337"; gene_name "CUFF.1975"; flanks "44247797-,44250622^"; structure "0,1^2-"; splice_chain ",44247797^44250622-"; psi "0.258800";
chr11	juncbase	jcn_only_AD	61560500	61593504	.	-	.	gene_id "jcn_only_AD.1409"; transcript_id "jcn_only_AD.1409"; gene_name "CUFF.1975"; flanks "61560500-,61593504-"; structure "1^,2^"; splice_chain "61560500^,61583898^"; psi "0.212100";
chr17	juncbase	intron_retention	79891183	79890839	.	-	.	gene_id "intron_retention.1338"; transcript_id "intron_retention.1338"; gene_name "CUFF.1975"; flanks "79891183-,79890839^"; structure "0,1^2-"; splice_chain ",79891183^79890839-"; psi "0.715800";
chr14	juncbase	intron_retention	24684943	24684868	.	-	.	gene_id "intron_retention.1339"; transcript_id "intron_retention.1339"; gene_name "CUFF.1975"; flanks "24684943-,24684868^"; structure "0,1^2-"; splice_chain ",24684943^24684868-"; psi "0.250000";
chr12	juncbase	jcn_only_AD	72083484	72090216	.	-	.	gene_id "jcn_only_AD.1410"; transcript_id "jcn_only_AD.1410"; gene_name "CUFF.1975"; flanks "72083484-,72090216-"; structure "1^,2^"; splice_chain "72083484^,72084210^"; psi "0.682200";
chr6	juncbase	cassette	46630235	46636446	.	-	.	gene_id "cassette.999"; transcript_id "cassette.999"; gene_name "CUFF.1975"; flanks "46630235^,46636446-"; structure "0,1-2^"; splice_chain ",46632511-46632623^"; psi "0.603100";
chr6	juncbase	intron_retention	43481097	43480938	.	-	.	gene_id "intron_retention.1340"; transcript_id "intron_retention.1340"; gene_name "CUFF.1975"; flanks "43481097-,43480938^"; structure "0,1^2-"; splice_chain ",43481097^43480938-"; psi "0.435000";
chr22	juncbase	intron_retention	51012054	51011351	.	-	.	gene_id "intron_retention.1341"; transcript_id "intron_retention.1341"; gene_name "CUFF.1975"; flanks "51012054-,51011351^"; structure "0,1^2-"; splice_chain ",51012054^51011351-"; psi "0.736700";
chr3	juncbase	jcn_only_AD	28283303	28304782	.	-	.	gene_id "jcn_only_AD.1411"; transcript_id "jcn_only_AD.1411"; gene_name "CUFF.1975"; flanks "28283303-,28304782-"; structure "1^,2^"; splice_chain "28283303^,28295256^"; psi "0.608732";
chr3	juncbase	jcn_only_AD	28283392	28304782	.	-	.	gene_id "jcn_only_AD.1412"; transcript_id "jcn_only_AD.1412"; gene_name "CUFF.1975"; flanks "28283392-,28304782-"; structure "1^,2^"; splice_chain "28283392^,28295256^"; psi "0.322654";
chr6	juncbase	intron_retention	31936238	31936678	.	-	.	gene_id "intron_retention.1342"; transcript_id "intron_retention.1342"; gene_name "CUFF.1975"; flanks "31936238-,31936678^"; structure "0,1^2-"; splice_chain ",31936238^31936678-"; psi "0.077800";
chr17	juncbase	jcn_only_AD	47307939	47304120	.	-	.	gene_id "jcn_only_AD.1413"; transcript_id "jcn_only_AD.1413"; gene_name "CUFF.1975"; flanks "47307939-,47304120-"; structure "1^,2^"; splice_chain "47307939^,47307830^"; psi "0.228200";
chr9	juncbase	intron_retention	123555638	123555535	.	-	.	gene_id "intron_retention.1343"; transcript_id "intron_retention.1343"; gene_name "CUFF.1975"; flanks "123555638-,123555535^"; structure "0,1^2-"; splice_chain ",123555638^123555535-"; psi "0.570600";
chr1	juncbase	intron_retention	245133745	245180544	.	-	.	gene_id "intron_retention.1344"; transcript_id "intron_retention.1344"; gene_name "CUFF.1975"; flanks "245133745-,245180544^"; structure "0,1^2-"; splice_chain ",245133745^245180544-"; psi "0.064300";
chr16	juncbase	intron_retention	19584563	19586420	.	-	.	gene_id "intron_retention.1345"; transcript_id "intron_retention.1345"; gene_name "CUFF.1975"; flanks "19584563-,19586420^"; structure "0,1^2-"; splice_chain ",19584563^19586420-"; psi "0.050400";
chr20	juncbase	jcn_only_AA	16730119	16744967	.	-	.	gene_id "jcn_only_AA.1164"; transcript_id "jcn_only_AA.1164"; gene_name "CUFF.1975"; flanks "16730119^,16744967^"; structure "1-,2-"; splice_chain "16730412-,16744967-"; psi "0.250000";
chr2	juncbase	intron_retention	220094622	220094950	.	-	.	gene_id "intron_retention.1346"; transcript_id "intron_retention.1346"; gene_name "CUFF.1975"; flanks "220094622-,220094950^"; structure "0,1^2-"; splice_chain ",220094622^220094950-"; psi "0.220100";
chr15	juncbase	intron_retention	83357910	83357583	.	-	.	gene_id "intron_retention.1347"; transcript_id "intron_retention.1347"; gene_name "CUFF.1975"; flanks "83357910-,83357583^"; structure "0,1^2-"; splice_chain ",83357910^83357583-"; psi "0.430000";
chr16	juncbase	intron_retention	14020613	14021885	.	-	.	gene_id "intron_retention.1348"; transcript_id "intron_retention.1348"; gene_name "CUFF.1975"; flanks "14020613-,14021885^"; structure "0,1^2-"; splice_chain ",14020613^14021885-"; psi "0.215200";
chr19	juncbase	jcn_only_AA	52901157	52901707	.	-	.	gene_id "jcn_only_AA.1165"; transcript_id "jcn_only_AA.1165"; gene_name "CUFF.1975"; flanks "52901157^,52901707^"; structure "1-,2-"; splice_chain "52901620-,52901707-"; psi "0.333300";
chr11	juncbase	cassette	3239789	3242800	.	-	.	gene_id "cassette.1000"; transcript_id "cassette.1000"; gene_name "CUFF.1975"; flanks "3239789^,3242800-"; structure "0,1-2^"; splice_chain ",3240930-3241018^"; psi "0.266700";
chr7	juncbase	jcn_only_AD	55759007	55755617	.	-	.	gene_id "jcn_only_AD.1414"; transcript_id "jcn_only_AD.1414"; gene_name "CUFF.1975"; flanks "55759007-,55755617-"; structure "1^,2^"; splice_chain "55759007^,55756606^"; psi "0.244400";
chr10	juncbase	cassette	35416121	35437296	.	-	.	gene_id "cassette.1001"; transcript_id "cassette.1001"; gene_name "CUFF.1975"; flanks "35416121^,35437296-"; structure "0,1-2^"; splice_chain ",35426710-35426807^"; psi "0.377500";
chr10	juncbase	cassette	35416495	35437296	.	-	.	gene_id "cassette.1002"; transcript_id "cassette.1002"; gene_name "CUFF.1975"; flanks "35416495^,35437296-"; structure "0,1-2^"; splice_chain ",35426710-35426807^"; psi "0.377500";
chr10	juncbase	cassette	35416121	35467817	.	-	.	gene_id "cassette.1003"; transcript_id "cassette.1003"; gene_name "CUFF.1975"; flanks "35416121^,35467817-"; structure "0,1-2^"; splice_chain ",35426710-35426807^"; psi "0.377500";
chr3	juncbase	jcn_only_AD	107596749	107595033	.	-	.	gene_id "jcn_only_AD.1415"; transcript_id "jcn_only_AD.1415"; gene_name "CUFF.1975"; flanks "107596749-,107595033-"; structure "1^,2^"; splice_chain "107596749^,107595302^"; psi "0.949864";
chr3	juncbase	jcn_only_AD	107596160	107595033	.	-	.	gene_id "jcn_only_AD.1416"; transcript_id "jcn_only_AD.1416"; gene_name "CUFF.1975"; flanks "107596160-,107595033-"; structure "1^,2^"; splice_chain "107596160^,107595302^"; psi "0.818182";
chr12	juncbase	jcn_only_AA	120172965	120172162	.	-	.	gene_id "jcn_only_AA.1166"; transcript_id "jcn_only_AA.1166"; gene_name "CUFF.1975"; flanks "120172965^,120172162^"; structure "1-,2-"; splice_chain "120172211-,120172162-"; psi "0.490200";
chr8	juncbase	jcn_only_AD	143915705	143921832	.	-	.	gene_id "jcn_only_AD.1417"; transcript_id "jcn_only_AD.1417"; gene_name "CUFF.1975"; flanks "143915705-,143921832-"; structure "1^,2^"; splice_chain "143915705^,143916284^"; psi "0.916700";
chr5	juncbase	cassette	54420631	54415746	.	-	.	gene_id "cassette.1004"; transcript_id "cassette.1004"; gene_name "CUFF.1975"; flanks "54420631^,54415746-"; structure "0,1-2^"; splice_chain ",54416378-54416253^"; psi "0.587400";
chr3	juncbase	jcn_only_AA	107586158	107576049	.	-	.	gene_id "jcn_only_AA.1167"; transcript_id "jcn_only_AA.1167"; gene_name "CUFF.1975"; flanks "107586158^,107576049^"; structure "1-,2-"; splice_chain "107585600-,107576049-"; psi "0.933658";
chr3	juncbase	jcn_only_AA	107586158	107578108	.	-	.	gene_id "jcn_only_AA.1168"; transcript_id "jcn_only_AA.1168"; gene_name "CUFF.1975"; flanks "107586158^,107578108^"; structure "1-,2-"; splice_chain "107585600-,107578108-"; psi "0.473064";
chr2	juncbase	jcn_only_AD	101541756	101549372	.	-	.	gene_id "jcn_only_AD.1418"; transcript_id "jcn_only_AD.1418"; gene_name "CUFF.1975"; flanks "101541756-,101549372-"; structure "1^,2^"; splice_chain "101541756^,101541762^"; psi "0.983900";
chr22	juncbase	jcn_only_AD	51012764	51012144	.	-	.	gene_id "jcn_only_AD.1419"; transcript_id "jcn_only_AD.1419"; gene_name "CUFF.1975"; flanks "51012764-,51012144-"; structure "1^,2^"; splice_chain "51012764^,51012237^"; psi "0.789200";
chr9	juncbase	jcn_only_AD	130966465	130953141	.	-	.	gene_id "jcn_only_AD.1420"; transcript_id "jcn_only_AD.1420"; gene_name "CUFF.1975"; flanks "130966465-,130953141-"; structure "1^,2^"; splice_chain "130966465^,130953559^"; psi "0.500000";
chr9	juncbase	jcn_only_AD	130954011	130953141	.	-	.	gene_id "jcn_only_AD.1421"; transcript_id "jcn_only_AD.1421"; gene_name "CUFF.1975"; flanks "130954011-,130953141-"; structure "1^,2^"; splice_chain "130954011^,130953559^"; psi "0.842593";
chr9	juncbase	jcn_only_AD	130953711	130953141	.	-	.	gene_id "jcn_only_AD.1422"; transcript_id "jcn_only_AD.1422"; gene_name "CUFF.1975"; flanks "130953711-,130953141-"; structure "1^,2^"; splice_chain "130953711^,130953559^"; psi "0.985073";
chr9	juncbase	jcn_only_AD	130954134	130953141	.	-	.	gene_id "jcn_only_AD.1423"; transcript_id "jcn_only_AD.1423"; gene_name "CUFF.1975"; flanks "130954134-,130953141-"; structure "1^,2^"; splice_chain "130954134^,130953559^"; psi "0.155280";
chr7	juncbase	jcn_only_AD	156526871	156516872	.	-	.	gene_id "jcn_only_AD.1424"; transcript_id "jcn_only_AD.1424"; gene_name "CUFF.1975"; flanks "156526871-,156516872-"; structure "1^,2^"; splice_chain "156526871^,156518129^"; psi "0.379800";
chr5	juncbase	cassette	60214092	60199543	.	-	.	gene_id "cassette.1005"; transcript_id "cassette.1005"; gene_name "CUFF.1975"; flanks "60214092^,60199543-"; structure "0,1-2^"; splice_chain ",60200700-60200619^"; psi "0.976000";
chr2	juncbase	jcn_only_AD	86389099	86386794	.	-	.	gene_id "jcn_only_AD.1425"; transcript_id "jcn_only_AD.1425"; gene_name "CUFF.1975"; flanks "86389099-,86386794-"; structure "1^,2^"; splice_chain "86389099^,86389075^"; psi "0.915400";
chr1	juncbase	jcn_only_AD	11082298	11083250	.	-	.	gene_id "jcn_only_AD.1426"; transcript_id "jcn_only_AD.1426"; gene_name "CUFF.1975"; flanks "11082298-,11083250-"; structure "1^,2^"; splice_chain "11082298^,11082307^"; psi "0.170300";
chr15	juncbase	jcn_only_AD	55789910	55783454	.	-	.	gene_id "jcn_only_AD.1427"; transcript_id "jcn_only_AD.1427"; gene_name "CUFF.1975"; flanks "55789910-,55783454-"; structure "1^,2^"; splice_chain "55789910^,55787326^"; psi "0.916400";
chr15	juncbase	cassette	57543621	57545460	.	-	.	gene_id "cassette.1006"; transcript_id "cassette.1006"; gene_name "CUFF.1975"; flanks "57543621^,57545460-"; structure "0,1-2^"; splice_chain ",57544619-57544690^"; psi "0.196200";
chr9	juncbase	cassette	86523367	86514719	.	-	.	gene_id "cassette.1007"; transcript_id "cassette.1007"; gene_name "CUFF.1975"; flanks "86523367^,86514719-"; structure "0,1-2^"; splice_chain ",86518933-86517975^"; psi "0.276900";
chr13	juncbase	jcn_only_AD	24380089	24334356	.	-	.	gene_id "jcn_only_AD.1428"; transcript_id "jcn_only_AD.1428"; gene_name "CUFF.1975"; flanks "24380089-,24334356-"; structure "1^,2^"; splice_chain "24380089^,24334672^"; psi "0.028000";
chr11	juncbase	jcn_only_AD	8615630	8486369	.	-	.	gene_id "jcn_only_AD.1429"; transcript_id "jcn_only_AD.1429"; gene_name "CUFF.1975"; flanks "8615630-,8486369-"; structure "1^,2^"; splice_chain "8615630^,8494710^"; psi "0.049400";
chr16	juncbase	jcn_only_AD	6028173	6400446	.	-	.	gene_id "jcn_only_AD.1430"; transcript_id "jcn_only_AD.1430"; gene_name "CUFF.1975"; flanks "6028173-,6400446-"; structure "1^,2^"; splice_chain "6028173^,6028178^"; psi "0.603604";
chr1	juncbase	intron_retention	54359959	54360084	.	-	.	gene_id "intron_retention.1349"; transcript_id "intron_retention.1349"; gene_name "CUFF.1975"; flanks "54359959-,54360084^"; structure "0,1^2-"; splice_chain ",54359959^54360084-"; psi "0.966400";
chr5	juncbase	cassette	36153144	36177067	.	-	.	gene_id "cassette.1008"; transcript_id "cassette.1008"; gene_name "CUFF.1975"; flanks "36153144^,36177067-"; structure "0,1-2^"; splice_chain ",36163747-36163858^"; psi "0.222400";
chr5	juncbase	cassette	36153144	36166621	.	-	.	gene_id "cassette.1009"; transcript_id "cassette.1009"; gene_name "CUFF.1975"; flanks "36153144^,36166621-"; structure "0,1-2^"; splice_chain ",36163747-36163858^"; psi "0.222400";
chr10	juncbase	intron_retention	73975965	73973035	.	-	.	gene_id "intron_retention.1350"; transcript_id "intron_retention.1350"; gene_name "CUFF.1975"; flanks "73975965-,73973035^"; structure "0,1^2-"; splice_chain ",73975965^73973035-"; psi "0.395100";
chr1	juncbase	intron_retention	110212193	110213909	.	-	.	gene_id "intron_retention.1351"; transcript_id "intron_retention.1351"; gene_name "CUFF.1975"; flanks "110212193-,110213909^"; structure "0,1^2-"; splice_chain ",110212193^110213909-"; psi "0.034000";
chr15	juncbase	jcn_only_AA	90437113	90432368	.	-	.	gene_id "jcn_only_AA.1169"; transcript_id "jcn_only_AA.1169"; gene_name "CUFF.1975"; flanks "90437113^,90432368^"; structure "1-,2-"; splice_chain "90432372-,90432368-"; psi "0.082000";
chr9	juncbase	intron_retention	34990809	34993197	.	-	.	gene_id "intron_retention.1352"; transcript_id "intron_retention.1352"; gene_name "CUFF.1975"; flanks "34990809-,34993197^"; structure "0,1^2-"; splice_chain ",34990809^34993197-"; psi "0.397100";
chr2	juncbase	jcn_only_AA	200472850	200493787	.	-	.	gene_id "jcn_only_AA.1170"; transcript_id "jcn_only_AA.1170"; gene_name "CUFF.1975"; flanks "200472850^,200493787^"; structure "1-,2-"; splice_chain "200489255-,200493787-"; psi "0.897000";
chr19	juncbase	cassette	16606562	16596068	.	-	.	gene_id "cassette.1010"; transcript_id "cassette.1010"; gene_name "CUFF.1975"; flanks "16606562^,16596068-"; structure "0,1-2^"; splice_chain ",16601381-16601178^"; psi "0.666700";
chr3	juncbase	cassette	120360436	120352437	.	-	.	gene_id "cassette.1011"; transcript_id "cassette.1011"; gene_name "CUFF.1975"; flanks "120360436^,120352437-"; structure "0,1-2^"; splice_chain ",120357428-120357302^"; psi "0.423500";
chr3	juncbase	cassette	120360436	120352175	.	-	.	gene_id "cassette.1012"; transcript_id "cassette.1012"; gene_name "CUFF.1975"; flanks "120360436^,120352175-"; structure "0,1-2^"; splice_chain ",120357428-120357302^"; psi "0.423500";
chr16	juncbase	intron_retention	67970118	67970006	.	-	.	gene_id "intron_retention.1353"; transcript_id "intron_retention.1353"; gene_name "CUFF.1975"; flanks "67970118-,67970006^"; structure "0,1^2-"; splice_chain ",67970118^67970006-"; psi "0.470600";
chr19	juncbase	intron_retention	45261670	45261981	.	-	.	gene_id "intron_retention.1354"; transcript_id "intron_retention.1354"; gene_name "CUFF.1975"; flanks "45261670-,45261981^"; structure "0,1^2-"; splice_chain ",45261670^45261981-"; psi "0.505400";
chr16	juncbase	jcn_only_AD	57517870	57513597	.	-	.	gene_id "jcn_only_AD.1431"; transcript_id "jcn_only_AD.1431"; gene_name "CUFF.1975"; flanks "57517870-,57513597-"; structure "1^,2^"; splice_chain "57517870^,57513773^"; psi "0.104317";
chr14	juncbase	jcn_only_AA	92922952	92949024	.	-	.	gene_id "jcn_only_AA.1171"; transcript_id "jcn_only_AA.1171"; gene_name "CUFF.1975"; flanks "92922952^,92949024^"; structure "1-,2-"; splice_chain "92923598-,92949024-"; psi "0.726100";
chr16	juncbase	jcn_only_AD	67222807	67221740	.	-	.	gene_id "jcn_only_AD.1432"; transcript_id "jcn_only_AD.1432"; gene_name "CUFF.1975"; flanks "67222807-,67221740-"; structure "1^,2^"; splice_chain "67222807^,67222624^"; psi "0.101700";
chr11	juncbase	jcn_only_AD	94706453	94705357	.	-	.	gene_id "jcn_only_AD.1433"; transcript_id "jcn_only_AD.1433"; gene_name "CUFF.1975"; flanks "94706453-,94705357-"; structure "1^,2^"; splice_chain "94706453^,94706437^"; psi "0.917037";
chr11	juncbase	jcn_only_AD	94706662	94705357	.	-	.	gene_id "jcn_only_AD.1434"; transcript_id "jcn_only_AD.1434"; gene_name "CUFF.1975"; flanks "94706662-,94705357-"; structure "1^,2^"; splice_chain "94706662^,94706437^"; psi "0.865456";
chrX	juncbase	jcn_only_AD	9050620	9001116	.	-	.	gene_id "jcn_only_AD.1435"; transcript_id "jcn_only_AD.1435"; gene_name "CUFF.1975"; flanks "9050620-,9001116-"; structure "1^,2^"; splice_chain "9050620^,9001893^"; psi "0.596200";
chr12	juncbase	cassette	53858636	53861005	.	-	.	gene_id "cassette.1013"; transcript_id "cassette.1013"; gene_name "CUFF.1975"; flanks "53858636^,53861005-"; structure "0,1-2^"; splice_chain ",53859716-53859757^"; psi "0.825700";
chr12	juncbase	cassette	53856351	53861005	.	-	.	gene_id "cassette.1014"; transcript_id "cassette.1014"; gene_name "CUFF.1975"; flanks "53856351^,53861005-"; structure "0,1-2^"; splice_chain ",53859716-53859757^"; psi "0.825700";
chr8	juncbase	intron_retention	144356972	144357365	.	-	.	gene_id "intron_retention.1355"; transcript_id "intron_retention.1355"; gene_name "CUFF.1975"; flanks "144356972-,144357365^"; structure "0,1^2-"; splice_chain ",144356972^144357365-"; psi "0.798500";
chr18	juncbase	jcn_only_AA	77441517	77455225	.	-	.	gene_id "jcn_only_AA.1172"; transcript_id "jcn_only_AA.1172"; gene_name "CUFF.1975"; flanks "77441517^,77455225^"; structure "1-,2-"; splice_chain "77443043-,77455225-"; psi "0.425900";
chr16	juncbase	jcn_only_AD	70256274	70255304	.	-	.	gene_id "jcn_only_AD.1436"; transcript_id "jcn_only_AD.1436"; gene_name "CUFF.1975"; flanks "70256274-,70255304-"; structure "1^,2^"; splice_chain "70256274^,70256270^"; psi "0.723400";
chr6	juncbase	jcn_only_AA	31509727	31508311	.	-	.	gene_id "jcn_only_AA.1173"; transcript_id "jcn_only_AA.1173"; gene_name "CUFF.1975"; flanks "31509727^,31508311^"; structure "1-,2-"; splice_chain "31508441-,31508311-"; psi "0.612200";
chr2	juncbase	intron_retention	241402929	241404033	.	-	.	gene_id "intron_retention.1356"; transcript_id "intron_retention.1356"; gene_name "CUFF.1975"; flanks "241402929-,241404033^"; structure "0,1^2-"; splice_chain ",241402929^241404033-"; psi "0.113200";
chr3	juncbase	cassette	125635562	125639668	.	-	.	gene_id "cassette.1015"; transcript_id "cassette.1015"; gene_name "CUFF.1975"; flanks "125635562^,125639668-"; structure "0,1-2^"; splice_chain ",125637707-125637769^"; psi "0.990200";
chr17	juncbase	jcn_only_AD	79995507	79994889	.	-	.	gene_id "jcn_only_AD.1437"; transcript_id "jcn_only_AD.1437"; gene_name "CUFF.1975"; flanks "79995507-,79994889-"; structure "1^,2^"; splice_chain "79995507^,79995490^"; psi "0.579790";